RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16503
(244 letters)
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD,
enzyme, nucleotide binding,
sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo
sapiens}
Length = 170
Score = 235 bits (603), Expect = 1e-79
Identities = 57/163 (34%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 5 DIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKI 63
+++ F+ S NGV+ FS+GS++ + ++ A QIPQ+V+W+++G
Sbjct: 10 EMEDFVQSSGENGVVVFSLGSMV--SNMTEERANVIASALAQIPQKVLWRFDGNKPDTLG 67
Query: 64 DKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEK 123
L W PQ D+L HP + FI+HGG G EA+Y G+P++GIP+F DQ NI ++
Sbjct: 68 LNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKA 127
Query: 124 AGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQD 166
G V + ++ ++ +L AL+ V+ +PSYK+ K++R+ D
Sbjct: 128 RGAAVRVDFNTMSSTDLLNALKRVINDPSYKENVMKLSRIQHD 170
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 170 bits (433), Expect = 6e-51
Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 12/186 (6%)
Query: 16 GVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIW-----KWEGENMSGKIDKILLKS 70
V+ S+GS + +RAF +P + K + D + +
Sbjct: 233 KVVLVSLGSAFTK---QPAFYRECVRAFGNLPGWHLVLQIGRKVTPAELGELPDNVEVHD 289
Query: 71 WAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTL 130
W PQ IL +F++H G G+ E L + P+I +P DQ N +++ G L
Sbjct: 290 WVPQLAILRQA--DLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKL 347
Query: 131 PYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRHGG--G 188
++ T + + ++ +P +R ++ + E RH
Sbjct: 348 ATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGTRRAADLIEAELPARHERQEP 407
Query: 189 AHLRPA 194
RP
Sbjct: 408 VGDRPN 413
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 166 bits (422), Expect = 2e-49
Identities = 41/176 (23%), Positives = 72/176 (40%), Gaps = 11/176 (6%)
Query: 16 GVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKI----LLKSW 71
V+ ++GS D + L A + + V+ + ++ + W
Sbjct: 256 PVLLIALGSAFTD---HLDFYRTCLSAVDGLDWHVVLSVGRFVDPADLGEVPPNVEVHQW 312
Query: 72 APQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLP 131
PQ DIL FI+H G T EAL + VP++ +P +Q N + + G G +P
Sbjct: 313 VPQLDIL--TKASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIP 370
Query: 132 YDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRHGG 187
DQ+T E + A+ V +P +R V + ++ A +E ++ G
Sbjct: 371 RDQVTAEKLREAVLAVASDPGVAERLAAVRQEIRE--AGGARAAADILEGILAEAG 424
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A
{Micromonospora echinospora}
Length = 402
Score = 146 bits (370), Expect = 5e-42
Identities = 33/177 (18%), Positives = 66/177 (37%), Gaps = 12/177 (6%)
Query: 16 GVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKI----LLKSW 71
V+ S+G+ + +A +AF P V+ G + + W
Sbjct: 232 PVLLVSLGNQFNE---HPEFFRACAQAFADTPWHVVMAIGGFLDPAVLGPLPPNVEAHQW 288
Query: 72 APQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFG-DQKANIRVVEKAGFGVTL 130
P +L H + ++HG EA +GVP++ +P F + + V + G G L
Sbjct: 289 IPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVL 346
Query: 131 PYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRHGG 187
DQ+ ++ A+ + + + ++R ++ R A +E +
Sbjct: 347 RPDQLEPASIREAVERLAADSAVRERVRRMQRDILS--SGGPARAADEVEAYLGRVA 401
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure
initiative, center for eukaryotic structural genomics;
HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB:
3iaa_A*
Length = 415
Score = 137 bits (347), Expect = 2e-38
Identities = 39/174 (22%), Positives = 68/174 (39%), Gaps = 11/174 (6%)
Query: 17 VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKI----LLKSWA 72
V+ S+G+ + RAF+ P V+ G+ + + W
Sbjct: 249 VVLVSLGTTFND---RPGFFRDCARAFDGQPWHVVMTLGGQVDPAALGDLPPNVEAHRWV 305
Query: 73 PQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPY 132
P +L V ++HGG EALY G P++ +P D + R V++ G G LP
Sbjct: 306 PHVKVL--EQATVCVTHGGMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPG 363
Query: 133 DQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRHG 186
++ +T+L A+ V +P+ R E + + A +E +
Sbjct: 364 EKADGDTLLAAVGAVAADPALLARVEAMRGHVRR--AGGAARAADAVEAYLARA 415
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A
{Saccharopolyspora erythraea}
Length = 441
Score = 123 bits (310), Expect = 4e-33
Identities = 30/172 (17%), Positives = 66/172 (38%), Gaps = 7/172 (4%)
Query: 16 GVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKI---DKILLKSWA 72
+ ++G + S + L A + +I ++ + + G D + +
Sbjct: 268 RRVCLTLGISSRENSIGQVSIEELLGAVGDVDAEIIATFDAQQLEGVANIPDNVRTVGFV 327
Query: 73 PQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPY 132
P +L P + HGG A GVP + +P D + ++ G G+ LP
Sbjct: 328 PMHALL--PTCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPV 385
Query: 133 DQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVIR 184
++T + + +++ VL +P+++ A ++ P + E +
Sbjct: 386 PELTPDQLRESVKRVLDDPAHRAGAARMRDDMLA--EPSPAEVVGICEELAA 435
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
PDB: 3oth_A*
Length = 412
Score = 122 bits (307), Expect = 7e-33
Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 11/176 (6%)
Query: 17 VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVI----WKWEGENMSGKIDKILLKSWA 72
++Y ++G+ G + +A + + V+ + + + L+SW
Sbjct: 244 LVYLTLGTSSGG---TVEVLRAAIDGLAGLDADVLVASGPSLDVSGLGEVPANVRLESWV 300
Query: 73 PQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPY 132
PQ +L P+V + + HGG T AL +GVP + P GD AN + V +AG G L
Sbjct: 301 PQAALL--PHVDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLP 358
Query: 133 DQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRHGGG 188
D I+ ++V A + +L SY+ A VA MP D + + G
Sbjct: 359 DNISPDSVSGAAKRLLAEESYRAGARAVAAEI--AAMPGPDEVVRLLPGFASRSAG 412
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis;
1.88A {Streptomyces fradiae}
Length = 384
Score = 114 bits (288), Expect = 3e-30
Identities = 32/178 (17%), Positives = 64/178 (35%), Gaps = 9/178 (5%)
Query: 17 VIYFSMGSIIQGKSFPSDKR--KAFLRAFEQIPQRVIWK--WEGENMSGKIDKILLKSWA 72
+ + GS + +S+ + + + + +I W
Sbjct: 212 RVLVTSGSRVAKESYDRNFDFLRGLAKDLVRWDVELIVAAPDTVAEALRAEVPQARVGWT 271
Query: 73 PQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPY 132
P + P + + H G + T L +GVP + IP +A R V G + L
Sbjct: 272 PLDVVA--PTCDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLP 329
Query: 133 DQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRHGGGAH 190
+ + E + + + + +Y +RA+ ++R MP T + +E + H H
Sbjct: 330 GEDSTEAIADSCQELQAKDTYARRAQDLSREI--SGMPLPATVVTALEQLAHH-HHHH 384
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati
enzyme discovery for natural product biosynthesis,
natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Length = 398
Score = 109 bits (275), Expect = 2e-28
Identities = 36/173 (20%), Positives = 69/173 (39%), Gaps = 12/173 (6%)
Query: 17 VIYFSMGSIIQ---GKSFPSDKR--KAFLRAFEQIPQRVIW---KWEGENMSGKIDKILL 68
+ + G+ + + P +A + ++ V+ + + + +L
Sbjct: 229 RLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKLGFEVVVAVSDKLAQTLQPLPEGVLA 288
Query: 69 KSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGV 128
P I+ P V + HGG T L GVP + +P+ + + R++ AG GV
Sbjct: 289 AGQFPLSAIM--PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGV 346
Query: 129 TLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEH 181
+P++Q E+VL A + + SY A ++A +P + IE
Sbjct: 347 EVPWEQAGVESVLAACARIRDDSSYVGNARRLAAEM--ATLPTPADIVRLIEQ 397
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC;
1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Length = 391
Score = 109 bits (274), Expect = 3e-28
Identities = 35/174 (20%), Positives = 63/174 (36%), Gaps = 9/174 (5%)
Query: 17 VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIW---KWEGENMSGKIDKILLKSWAP 73
+ MG ++ + P+ +A A E + ++ D + P
Sbjct: 220 RVCICMGRMVLNATGPAPLLRAVAAATELPGVEAVIAVPPEHRALLTDLPDNARIAESVP 279
Query: 74 QRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYD 133
L ++ I GG A G+P + +P + DQ R + AG G+ LP +
Sbjct: 280 LNLFL--RTCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDE 337
Query: 134 QIT--EETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRH 185
Q E ++ TVLG+ + A K++ MP + +E+
Sbjct: 338 QAQSDHEQFTDSIATVLGDTGFAAAAIKLSDEI--TAMPHPAALVRTLENTAAI 389
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 104 bits (261), Expect = 3e-26
Identities = 43/183 (23%), Positives = 63/183 (34%), Gaps = 12/183 (6%)
Query: 5 DIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIW--KWEGENMSGK 62
++ FLD +Y GS+ P+D + + A +RVI W +
Sbjct: 229 ELAAFLDAG-PPPVYLGFGSL----GAPADAVRVAIDAIRAHGRRVILSRGWADLVLPDD 283
Query: 63 IDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVE 122
+ + V I HGG T A +G P I +P DQ V
Sbjct: 284 GADCFAIGEVNHQVLF--GRVAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVA 341
Query: 123 KAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHV 182
+ G GV T +++ AL T L P RA VA + A ++ V
Sbjct: 342 ELGVGVAHDGPIPTFDSLSAALATAL-TPETHARATAVAGTIRTD--GAAVAARLLLDAV 398
Query: 183 IRH 185
R
Sbjct: 399 SRE 401
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
teicoplanin, ORF1, natural products, antibiotic; HET:
UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
1pn3_A* 1pnv_A*
Length = 404
Score = 103 bits (259), Expect = 4e-26
Identities = 43/183 (23%), Positives = 67/183 (36%), Gaps = 12/183 (6%)
Query: 5 DIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVI--WKWEGENMSGK 62
+++ FL + +Y GS P++ + + A +RV+ W G +
Sbjct: 212 ELEGFLRAG-SPPVYVGFGSG----PAPAEAARVAIEAVRAQGRRVVLSSGWAGLGRIDE 266
Query: 63 IDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVE 122
D L+ + + V + HGG TT +G P + +P DQ V
Sbjct: 267 GDDCLVVGEVNHQVLF--GRVAAVVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVA 324
Query: 123 KAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHV 182
G GV T E++ AL T L P + RA VA R A +E +
Sbjct: 325 DLGVGVAHDGPTPTVESLSAALATAL-TPGIRARAAAVAGTI--RTDGTTVAAKLLLEAI 381
Query: 183 IRH 185
R
Sbjct: 382 SRQ 384
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold,
glycopeptide, VACO antibiotic, transferase-antibiotic
complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A
{Amycolatopsis orientalis} SCOP: c.87.1.5
Length = 416
Score = 101 bits (254), Expect = 3e-25
Identities = 45/194 (23%), Positives = 66/194 (34%), Gaps = 19/194 (9%)
Query: 5 DIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVI--WKWEGENMSGK 62
+++ FL + ++ GS +D K + A +RVI W +
Sbjct: 228 ELEAFLAAG-SPPVHIGFGSSSGRG--IADAAKVAVEAIRAQGRRVILSRGWTELVLPDD 284
Query: 63 IDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVE 122
D + + V I HG A +GVP + IP DQ V
Sbjct: 285 RDDCFAIDEVNFQALF--RRVAAVIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVA 342
Query: 123 KAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQD-----------RPMPP 171
G GV T E++ AL TVL P + RAE VA + +
Sbjct: 343 ALGIGVAHDGPTPTFESLSAALTTVL-APETRARAEAVAGMVLTDGAAAAADLVLAAVGR 401
Query: 172 LDTAIYWIEHVIRH 185
A+ +EH H
Sbjct: 402 EKPAVPALEHHHHH 415
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD C0T; 1.60A {Micromonospora
echinospora} PDB: 3d0q_A* 3d0r_A*
Length = 398
Score = 98.7 bits (246), Expect = 3e-24
Identities = 28/157 (17%), Positives = 59/157 (37%), Gaps = 8/157 (5%)
Query: 17 VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWK--WEGENMSGKI-DKILLKSWAP 73
+ +MG+I + ++F + + A ++ + + G + + W P
Sbjct: 234 EVAITMGTI-ELQAFGIGAVEPIIAAAGEVDADFVLALGDLDISPLGTLPRNVRAVGWTP 292
Query: 74 QRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYD 133
+L + HGG A+ +G+P + P DQ + + G+ L
Sbjct: 293 LHTLL--RTCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVST 350
Query: 134 QITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMP 170
+++ LR ++G+ S + A +V P P
Sbjct: 351 --SDKVDADLLRRLIGDESLRTAAREVREEMVALPTP 385
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold,
GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A
{Medicago truncatula} PDB: 3hbj_A*
Length = 454
Score = 78.8 bits (195), Expect = 5e-17
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 12/156 (7%)
Query: 17 VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIW----KWEGENMSGKIDKI----LL 68
V+Y S GS++ + P + A + E+ IW + + G +++ +
Sbjct: 275 VVYISFGSVV---TPPPHELTALAESLEECGFPFIWSFRGDPKEKLPKGFLERTKTKGKI 331
Query: 69 KSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIR-VVEKAGFG 127
+WAPQ +IL H +V VF++H G+ E + GVP+I P FGDQ N G
Sbjct: 332 VAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIG 391
Query: 128 VTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARL 163
V + +T+E++ AL + + +K+ +L
Sbjct: 392 VGVDNGVLTKESIKKALELTMSSEKGGIMRQKIVKL 427
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis,
glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP:
c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Length = 456
Score = 78.4 bits (194), Expect = 6e-17
Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 12/156 (7%)
Query: 17 VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIW----KWEGENMSGKIDKI----LL 68
V+Y S G++ + P + A A E IW K G ++K ++
Sbjct: 273 VVYISFGTVT---TPPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGFLEKTRGYGMV 329
Query: 69 KSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIR-VVEKAGFG 127
WAPQ ++L H V F++H G+ E++ GVP+I P FGDQ+ N R V + G
Sbjct: 330 VPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIG 389
Query: 128 VTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARL 163
V + T+ ++ +L KK E + L
Sbjct: 390 VRIEGGVFTKSGLMSCFDQILSQEKGKKLRENLRAL 425
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 76.5 bits (189), Expect = 3e-16
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 17 VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIW------KW--EG--ENMSGKIDKI 66
V++ GS+ G SF + + + R +W K EG E M + K
Sbjct: 278 VVFLCFGSM--GVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMELE-GKG 334
Query: 67 LLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIR-VVEKAG 125
++ WAPQ ++L H + F+SH G+ E+++ GVPI+ P++ +Q+ N +V++ G
Sbjct: 335 MICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWG 394
Query: 126 FGVTLPYDQITEETV 140
G+ L D V
Sbjct: 395 VGLGLRVDYRKGSDV 409
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation,
isoflavonoid, uridine diphosphate glycosyltransferase;
2.10A {Medicago truncatula} SCOP: c.87.1.10
Length = 482
Score = 75.8 bits (187), Expect = 5e-16
Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 67 LLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIR-VVEKAG 125
L+ SW PQ +L+HP++ F++H G+ TTE++ +GVP++ P F DQ + R + +
Sbjct: 356 LIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWE 415
Query: 126 FGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARL 163
G+ + + + E + + V+ KK +K L
Sbjct: 416 IGMEIDTN-VKREELAKLINEVIAGDKGKKMKQKAMEL 452
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
N-glucosyltransferase, UDP-glucose- dependent, plant
glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Length = 480
Score = 73.0 bits (180), Expect = 4e-15
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 67 LLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIR-VVEKAG 125
++ WAPQ +L HP+ F++H G+ T E++ SG+P+I P++ +QK N + E
Sbjct: 342 VIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIR 401
Query: 126 FGVTLPYDQ---ITEETVLVALRTVLGNPSYKKRAEKVARL 163
+ + E V ++ ++ K K+ L
Sbjct: 402 AALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKEL 442
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.007
Identities = 35/246 (14%), Positives = 77/246 (31%), Gaps = 62/246 (25%)
Query: 32 PSDKRKAF--LRAFE---QIPQRVI---WKWEGENMSGKIDKILLKSWAPQRDILDHPNV 83
P++ RK F L F IP ++ W ++ +++ + P
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIW----FDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 84 KVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVA 143
+L + + + + +V+ T D + +
Sbjct: 424 STISIPSIYLELK-----------VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 144 LRTVLGNPSY----KKRAEKVA---RLFQDRPMPPLDTAIYWIEHVIRHGGGAHLRPAS- 195
+ +G + + E++ +F D ++E IRH A S
Sbjct: 473 FYSHIG---HHLKNIEHPERMTLFRMVFLD-----FR----FLEQKIRHDSTAWNASGSI 520
Query: 196 ------LELYWWQYI---------LLDVIIALILLIAAMVWSIQW--LVRYALITYYNTV 238
L+ Y YI L++ I+ + I + ++ L+R AL+ +
Sbjct: 521 LNTLQQLKFY-KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Query: 239 -DDKKR 243
++ +
Sbjct: 580 FEEAHK 585
Score = 36.0 bits (82), Expect = 0.009
Identities = 39/286 (13%), Positives = 78/286 (27%), Gaps = 93/286 (32%)
Query: 2 NETDIKKFLD-----ESVNGVIYFS-MGSIIQGKSFPSDKRKAF---LRAFEQIPQRVI- 51
E D + ++ + II K S + F L E++ Q+ +
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 52 --------WKWEGENMSGKIDKILLKSWAPQRDILDHPNVKVFISHG-----GFLGTTEA 98
+ + ++ + + QRD L + + +VF + +L +A
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL-YNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 99 LYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAE 158
L P + + G G G +T + V +
Sbjct: 144 LLELRPAKNVLIDGV----------LGSG----------KTWVALD--VC-------LSY 174
Query: 159 KVARLFQDRPMPPLDTAIYWIE------------------HVIRHGGGA---HLRPASLE 197
KV + I+W+ + I + H L
Sbjct: 175 KVQCKMDFK--------IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 198 LYWWQYILLDVIIALI----LLIAAMVWSIQWLVRY------ALIT 233
++ Q L ++ + LL+ V + L+T
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNAFNLSCKILLT 271
Score = 27.9 bits (61), Expect = 4.0
Identities = 37/291 (12%), Positives = 72/291 (24%), Gaps = 99/291 (34%)
Query: 7 KKFLDESVNGVIYFSMGS-------IIQGKSFPSDKRKAFLRAFEQ---IPQRVIWKWEG 56
K + + + ++ + + + + + I R+
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI------ 227
Query: 57 ENMSGKIDKILLKSWAPQRD--ILDH---PNV-KVFISHGGFLGTTEALYSGVPIIGIPM 110
++ ++ + LLKS + +L + F L TT + V +
Sbjct: 228 HSIQAEL-RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR--FKQVTDF---L 281
Query: 111 FGDQKANIRVVE-KAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEK---------- 159
+I + T + V L L E
Sbjct: 282 SAATTTHISLDHHSMTL---------TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 160 VARLFQDRPMPPLDTAIYW-------IEHVIRHGGGAHLRPAS----------------- 195
+A +D T W + +I L PA
Sbjct: 333 IAESIRDGL----ATWDNWKHVNCDKLTTIIE-SSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 196 ----LELYWWQYILLDVIIALILLIAAMVWSIQWLVRYALI-------TYY 235
L L W+ I DV++ + L +Y+L+ T
Sbjct: 388 PTILLSLIWFDVIKSDVMVVV-----------NKLHKYSLVEKQPKESTIS 427
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like
fold, endoplasmic reticulum, glycosyltransferase,
structural genomics; NMR {Saccharomyces cerevisiae} PDB:
2ks6_A
Length = 224
Score = 35.9 bits (82), Expect = 0.007
Identities = 24/155 (15%), Positives = 45/155 (29%), Gaps = 13/155 (8%)
Query: 25 IIQ-GKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNV 83
IIQ G+++ S+ Q + I + +L+ +
Sbjct: 66 IIQFGRNYSSEFEHLVQERGGQRESQKIPIDQFGCGDTARQYVLMNGKLKVIGFDFSTKM 125
Query: 84 K--------VFISHGGFLGTTEALYSGVPIIGIP----MFGDQKANIRVVEKAGFGVTLP 131
+ + ISH G ++L P+I M Q+ + G+ +
Sbjct: 126 QSIIRDYSDLVISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSCA 185
Query: 132 YDQITEETVLVALRTVLGNPSYKKRAEKVARLFQD 166
+ L A +T P RL +
Sbjct: 186 PTETGLIAGLRASQTEKLKPFPVSHNPSFERLLVE 220
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB:
3hbn_A*
Length = 282
Score = 35.5 bits (80), Expect = 0.009
Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 12/111 (10%)
Query: 32 PSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNVK------- 84
+D + L+ ++P+ I + + + K L K +I + +
Sbjct: 166 GTDIKNLSLQIASELPKTKIISIATSSSNPNLKK-LQKFAKLHNNIRLFIDHENIAKLMN 224
Query: 85 ---VFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPY 132
I EAL I +Q++ + K G+ V Y
Sbjct: 225 ESNKLIISAS-SLVNEALLLKANFKAICYVKNQESTATWLAKKGYEVEYKY 274
>2v8i_A Pectate lyase; periplasm, beta-elimination, pectin degradation;
1.50A {Yersinia enterocolitica} PDB: 2v8k_A* 2v8j_A
Length = 543
Score = 30.1 bits (67), Expect = 0.80
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 140 VLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEH 181
V+ L + G+P Y+KRAE + R P +YW H
Sbjct: 66 VMSGLSQLSGDPRYQKRAEDIVRYHFQNYQDP-SGLLYWGGH 106
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 28.6 bits (64), Expect = 2.6
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 5/76 (6%)
Query: 154 KKRAEKVARLFQDRPMPPLDTA-IYWIEHVIRHGGGA----HLRPASLELYWWQYILLDV 208
+K + R +Q + P +YW + H A L L W + V
Sbjct: 458 RKMVTQFQRYYQPHTLSPDQEDCMYWYNFLAYHMASANMHKELCALMFSLDWIKAKTELV 517
Query: 209 IIALILLIAAMVWSIQ 224
A ++ I
Sbjct: 518 GPAHLIHEFVAYRHIL 533
>3iym_A Capsid protein; dsRNA virus, icosahedral virus, partitivirus,
PSV-S; 4.70A {Penicillium stoloniferum virus S}
Length = 434
Score = 27.9 bits (61), Expect = 3.1
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 30 SFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNVKVFISH 89
S PS + LR FE RV++ + +G I +SW P + + N K ++
Sbjct: 172 SSPSIGTRFLLRDFEHAVSRVVFLADQLWTNGNSHHIFARSWLPMSN--NDGNFKTIVAS 229
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU
proteins, viral protein,transferase; 2.31A {Paramecium
bursaria chlorella virus NY} PDB: 3oy7_A*
Length = 413
Score = 27.8 bits (61), Expect = 3.2
Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 16/136 (11%)
Query: 43 FEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRD----ILDHPNVKVFISHG-GF-LGTT 96
I R + +N+ ++KI++ + + + +V V S G GF L +
Sbjct: 232 LHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLCSA 291
Query: 97 EALYSGVPII-----GIPMFGDQKANIRV-----VEKAGFGVTLPYDQITEETVLVALRT 146
E G P+I G + ++ + + I + LV T
Sbjct: 292 EGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAFT 351
Query: 147 VLGNPSYKKRAEKVAR 162
+ +K K +
Sbjct: 352 FFKDEKNRKEYGKRVQ 367
>1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation;
HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2
c.69.1.19 PDB: 2ppl_A
Length = 450
Score = 27.3 bits (60), Expect = 5.4
Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 20/107 (18%)
Query: 85 VFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVAL 144
FI HG F+ E + + + MF ++ N V+ G Y Q +V
Sbjct: 73 RFIIHG-FIDKGEE--NWLLDMCKNMFKVEEVNCICVD-WKKGSQTSYTQAANNVRVVGA 128
Query: 145 RTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRHGGGAHL 191
+ A+ ++ L + P +I H GAH+
Sbjct: 129 QV----------AQMLSMLSANYSYSPSQV------QLIGHSLGAHV 159
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 6.2
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 155 KRAEKVARLFQDRPMPPLDTAI 176
K+ + +L+ D P L AI
Sbjct: 23 KKLQASLKLYADDSAPAL--AI 42
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 27.1 bits (59), Expect = 6.2
Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 23/113 (20%)
Query: 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSW--A 72
+ ++Y + + K P + + +++P V+W + + ++
Sbjct: 522 DAIVYCNFNQLY--KIDP-STLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLP 578
Query: 73 PQRDIL-----------DHPNVKVFIS---HGGFLGTT--EALYSGVPIIGIP 109
R I V + G TT + L++G P++ +P
Sbjct: 579 QNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNG--HTTGMDVLWAGTPMVTMP 629
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta
domain2: beta sandwich, structural genomics, PSI,
protein structure initiative; 2.30A {Thermotoga
maritima}
Length = 258
Score = 26.8 bits (60), Expect = 6.4
Identities = 9/66 (13%), Positives = 23/66 (34%), Gaps = 7/66 (10%)
Query: 50 VIWKWEGENMSGKIDKILLKSWA----PQRDILDHPNVKVFISHGG---FLGTTEALYSG 102
++++ E E + + + K + + + + GG L + G
Sbjct: 5 ILYREEREKEGEFLKEKISKEHEVIEFGEANAPGRVTADLIVVVGGDGTVLKAAKKAADG 64
Query: 103 VPIIGI 108
P++G
Sbjct: 65 TPMVGF 70
>1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus}
SCOP: b.12.1.2 c.69.1.19
Length = 449
Score = 26.9 bits (59), Expect = 7.4
Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 20/107 (18%)
Query: 85 VFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVAL 144
FI HG F+ E S + + MF + N V+ G Y Q ++ +V
Sbjct: 72 RFIIHG-FIDKGEE--SWLSTMCQNMFKVESVNCICVD-WKSGSRTAYSQASQNVRIVGA 127
Query: 145 RTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRHGGGAHL 191
A V L P + H+I H G+H
Sbjct: 128 EV----------AYLVGVLQSSFDYSPSNV------HIIGHSLGSHA 158
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding
protein; 1.00A {Staphylococcus aureus subsp}
Length = 130
Score = 25.9 bits (57), Expect = 7.6
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 200 WWQYILLDVIIALILLIAAMVWSIQWLV 227
+ I L VI+ + +LI ++W + L+
Sbjct: 102 SKEPIQLLVIMGITVLITLLLWIMLVLI 129
>3dcl_A TM1086; SAD, structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG, U function; 2.25A {Thermotoga maritima} PDB:
3n99_A
Length = 284
Score = 26.8 bits (59), Expect = 7.8
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 64 DKILLKSWAPQRDILDHPNVKVF 86
DKIL+K+W +LDHP+VKV
Sbjct: 130 DKILIKAWGQGLKLLDHPDVKVM 152
>3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics,
amidohydrolase, PSI-2, protein structure initiative;
2.00A {Lactobacillus acidophilus}
Length = 312
Score = 26.7 bits (59), Expect = 8.1
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 79 DHPNVKVFISHGG 91
D+PN+K+ + H G
Sbjct: 196 DYPNLKILVHHAG 208
>2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2,
ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN;
2.50A {Lactobacillus plantarum} SCOP: c.1.9.15
Length = 307
Score = 26.2 bits (58), Expect = 9.4
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 79 DHPNVKVFISHGG 91
+PN+KV I H G
Sbjct: 195 KYPNIKVIIPHAG 207
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.436
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,053,452
Number of extensions: 254040
Number of successful extensions: 698
Number of sequences better than 10.0: 1
Number of HSP's gapped: 670
Number of HSP's successfully gapped: 54
Length of query: 244
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 153
Effective length of database: 4,160,982
Effective search space: 636630246
Effective search space used: 636630246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.5 bits)