BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16508
(385 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|B Chain B, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|C Chain C, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|D Chain D, Crystal Structure Of Human Daam1 Fh2
Length = 419
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 119/200 (59%), Gaps = 3/200 (1%)
Query: 182 DGKRSLNVNIFLKQFRSSNEDIIHLIKNGDHDE-IGTEKLRGLLKILPQLDELEMLRNFD 240
DG+R+ N NI L + + SN++I I D E + + L LLK +P+ ++++L
Sbjct: 96 DGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLLEEHK 155
Query: 241 GDKSRLGNAEKFLLQLIQVPNYKLRIESMLLKEEFATNMSYLEPSINSMIVAGEDLMSNK 300
+ R+ A++FL ++ ++ +Y+ R++S+ K++FA ++ ++P + ++ E++ +
Sbjct: 156 HELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSG 215
Query: 301 ALQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDIRAN-KPGMNLIHYVALQAEKK 359
AL+++L +V+ GN++N G GNA G K+SSL K+ D +++ + L+HY+ E K
Sbjct: 216 ALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLNKIADTKSSIDKNITLLHYLITIVENK 274
Query: 360 RKELLNFTEDMGFLEEATKL 379
+LN E++ + +A K+
Sbjct: 275 YPSVLNLNEELRDIPQAAKV 294
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment
Length = 483
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 119/200 (59%), Gaps = 3/200 (1%)
Query: 182 DGKRSLNVNIFLKQFRSSNEDIIHLIKNGDHDE-IGTEKLRGLLKILPQLDELEMLRNFD 240
DG+R+ N NI L + + SN++I I D E + + L LLK +P+ ++++L
Sbjct: 94 DGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLLEEHK 153
Query: 241 GDKSRLGNAEKFLLQLIQVPNYKLRIESMLLKEEFATNMSYLEPSINSMIVAGEDLMSNK 300
+ R+ A++FL ++ ++ +Y+ R++S+ K++FA ++ ++P + ++ E++ +
Sbjct: 154 HELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSG 213
Query: 301 ALQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDIRAN-KPGMNLIHYVALQAEKK 359
AL+++L +V+ GN++N G GNA G K+SSL K+ D +++ + L+HY+ E K
Sbjct: 214 ALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLNKIADTKSSIDKNITLLHYLITIVENK 272
Query: 360 RKELLNFTEDMGFLEEATKL 379
+LN E++ + +A K+
Sbjct: 273 YPSVLNLNEELRDIPQAAKV 292
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|H Chain H, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|G Chain G, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|F Chain F, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 467
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 110/199 (55%)
Query: 182 DGKRSLNVNIFLKQFRSSNEDIIHLIKNGDHDEIGTEKLRGLLKILPQLDELEMLRNFDG 241
D K + N++IFL FR ++I ++I + + ++ L+K +P+ ++L+ML
Sbjct: 103 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 162
Query: 242 DKSRLGNAEKFLLQLIQVPNYKLRIESMLLKEEFATNMSYLEPSINSMIVAGEDLMSNKA 301
+ L +E+F + + VP + R+ ++L K +F+ + ++P I S+ A E+L ++
Sbjct: 163 EYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSEN 222
Query: 302 LQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDIRANKPGMNLIHYVALQAEKKRK 361
+L + + GN++N+G A G +S L KL D ++ M L+H++A E
Sbjct: 223 FSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHP 282
Query: 362 ELLNFTEDMGFLEEATKLT 380
E+L F +++ +E+A++++
Sbjct: 283 EVLKFPDELAHVEKASRVS 301
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|B Chain B, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|C Chain C, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|D Chain D, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
Length = 340
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 110/199 (55%)
Query: 182 DGKRSLNVNIFLKQFRSSNEDIIHLIKNGDHDEIGTEKLRGLLKILPQLDELEMLRNFDG 241
D K + N++IFL FR ++I ++I + + ++ L+K +P+ ++L+ML
Sbjct: 13 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 72
Query: 242 DKSRLGNAEKFLLQLIQVPNYKLRIESMLLKEEFATNMSYLEPSINSMIVAGEDLMSNKA 301
+ L +E+F + + VP + R+ ++L K +F+ + ++P I S+ A E+L ++
Sbjct: 73 EYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSEN 132
Query: 302 LQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDIRANKPGMNLIHYVALQAEKKRK 361
+L + + GN++N+G A G +S L KL D ++ M L+H++A E
Sbjct: 133 FSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHP 192
Query: 362 ELLNFTEDMGFLEEATKLT 380
E+L F +++ +E+A++++
Sbjct: 193 EVLKFPDELAHVEKASRVS 211
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|F Chain F, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|G Chain G, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|H Chain H, Autoinhibited Formin Mdia1 Structure
Length = 457
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 110/199 (55%)
Query: 182 DGKRSLNVNIFLKQFRSSNEDIIHLIKNGDHDEIGTEKLRGLLKILPQLDELEMLRNFDG 241
D K + N++IFL FR ++I ++I + + ++ L+K +P+ ++L+ML
Sbjct: 84 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 143
Query: 242 DKSRLGNAEKFLLQLIQVPNYKLRIESMLLKEEFATNMSYLEPSINSMIVAGEDLMSNKA 301
+ L +E+F + + VP + R+ ++L K +F+ + ++P I S+ A E+L ++
Sbjct: 144 EYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSEN 203
Query: 302 LQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDIRANKPGMNLIHYVALQAEKKRK 361
+L + + GN++N+G A G +S L KL D ++ M L+H++A E
Sbjct: 204 FSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHP 263
Query: 362 ELLNFTEDMGFLEEATKLT 380
E+L F +++ +E+A++++
Sbjct: 264 EVLKFPDELAHVEKASRVS 282
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|E Chain E, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|C Chain C, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|B Chain B, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
Length = 402
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 108/202 (53%), Gaps = 4/202 (1%)
Query: 182 DGKRSLNVNIFLKQFRSSNEDIIHLIKNGDHDEIGTEKLRGLLKILPQLDELEMLRNFDG 241
+ R+ N+ I L++ S E+I I D + + + L++ LP E+++LR ++
Sbjct: 88 EANRAKNLAITLRKAGRSAEEICRAIHTFDLQTLPVDFVECLMRFLPTEAEVKLLRQYER 147
Query: 242 DKS---RLGNAEKFLLQLIQVPNYKLRIESMLLKEEFATNMSYLEPSINSMIVAGEDLMS 298
++ L ++F+L +V R+ M F N+ L P +N++I A + S
Sbjct: 148 ERQPLEELAAEDRFMLLFSKVERLTQRMAGMAFLGNFQDNLQMLTPQLNAIIAASASVKS 207
Query: 299 NKALQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDIRANKPGMNLIHYVALQAEK 358
++ L+++L +++ GN++NS G G KL SL L D ++ M L+H++AL ++
Sbjct: 208 SQKLKQMLEIILALGNYMNSSKR-GAVYGFKLQSLDLLLDTKSTDRKMTLLHFIALTVKE 266
Query: 359 KRKELLNFTEDMGFLEEATKLT 380
K EL NF +++ F+E+A ++
Sbjct: 267 KYPELANFWQELHFVEKAAAVS 288
>pdb|2BNX|A Chain A, Crystal Structure Of The Dimeric Regulatory Domain Of
Mouse Diaphaneous-Related Formin (Drf), Mdia1
pdb|2BNX|B Chain B, Crystal Structure Of The Dimeric Regulatory Domain Of
Mouse Diaphaneous-Related Formin (Drf), Mdia1
Length = 386
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 55 DLSVQLDVFDEQKESDEAQILGAPDGV--DLNSHLDVFYAVLRQVAETPQEIPFLSILQH 112
D+ VQL VFDEQ + D + G D + +++ +VF +L V ++ E FLSILQH
Sbjct: 218 DMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQH 277
Query: 113 LLRI 116
LL +
Sbjct: 278 LLLV 281
>pdb|3OBV|A Chain A, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|B Chain B, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|C Chain C, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|D Chain D, Autoinhibited Formin Mdia1 Structure
Length = 327
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 55 DLSVQLDVFDEQKESDEAQILGAPDGV--DLNSHLDVFYAVLRQVAETPQEIPFLSILQH 112
D+ VQL VFDEQ + D + G D + +++ +VF +L V ++ E FLSILQH
Sbjct: 218 DMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQH 277
Query: 113 LLRI 116
LL +
Sbjct: 278 LLLV 281
>pdb|3O4X|A Chain A, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|B Chain B, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|C Chain C, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|D Chain D, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 330
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 55 DLSVQLDVFDEQKESDEAQILGAPDGV--DLNSHLDVFYAVLRQVAETPQEIPFLSILQH 112
D+ VQL VFDEQ + D + G D + +++ +VF +L V ++ E FLSILQH
Sbjct: 220 DMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQH 279
Query: 113 LLRI 116
LL +
Sbjct: 280 LLLV 283
>pdb|2BAP|B Chain B, Crystal Structure Of The N-Terminal Mdia1 Armadillo Repeat
Region And Dimerisation Domain In Complex With The Mdia1
Autoregulatory Domain (Dad)
pdb|2BAP|A Chain A, Crystal Structure Of The N-Terminal Mdia1 Armadillo Repeat
Region And Dimerisation Domain In Complex With The Mdia1
Autoregulatory Domain (Dad)
Length = 317
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 55 DLSVQLDVFDEQKESDEAQILGAPDGV--DLNSHLDVFYAVLRQVAETPQEIPFLSILQH 112
D+ VQL VFDEQ + D + G D + +++ +VF +L V ++ E FLSILQH
Sbjct: 214 DMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQH 273
Query: 113 LLRI 116
LL +
Sbjct: 274 LLLV 277
>pdb|1Z2C|B Chain B, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|D Chain D, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 383
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 55 DLSVQLDVFDEQKESDEAQILGAPDGV--DLNSHLDVFYAVLRQVAETPQEIPFLSILQH 112
D+ VQL VFDEQ + D + G D + +++ +VF +L V ++ E FLSILQH
Sbjct: 280 DMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQH 339
Query: 113 LLRI 116
LL +
Sbjct: 340 LLLV 343
>pdb|3EG5|B Chain B, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|D Chain D, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 383
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 55 DLSVQLDVFDEQKESDEAQILGAPDGV--DLNSHLDVFYAVLRQVAETPQEIPFLSILQH 112
D+ VQL VFDEQ + D + G D + +++ +VF +L V ++ E FLSILQH
Sbjct: 280 DMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQH 339
Query: 113 LLRI 116
LL +
Sbjct: 340 LLLV 343
>pdb|1UX5|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Flexibly Tethered Dimer Architecture
Length = 411
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 228 PQLDELEMLRNFD------GDKSRLGNAEKFLLQL-IQVPNYK-LRIESMLLKEEFATNM 279
P + E +RN + D + L A++ LQL + + +Y R+ ++ + +
Sbjct: 134 PYSTDWEGVRNLEDAKPPEKDPNDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREY 193
Query: 280 SYLEPSINSMIVAGEDLMSNKALQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDI 339
+ L + + A L + L+ V +++ GNF+N + A G KLS+LQ+LT I
Sbjct: 194 NELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDT--SKQAQGFKLSTLQRLTFI 251
Query: 340 RANKPGMNLIHYV 352
+ M ++YV
Sbjct: 252 KDTTNSMTFLNYV 264
>pdb|1UX4|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
pdb|1UX4|B Chain B, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
Length = 410
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 228 PQLDELEMLRNFD------GDKSRLGNAEKFLLQL-IQVPNYK-LRIESMLLKEEFATNM 279
P + E +RN + D + L A++ LQL + + +Y R+ ++ + +
Sbjct: 128 PYSTDWEGVRNLEDAKPPEKDPNDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREY 187
Query: 280 SYLEPSINSMIVAGEDLMSNKALQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDI 339
+ L + + A L + L+ V +++ GNF+N + A G KLS+LQ+LT I
Sbjct: 188 NELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDT--SKQAQGFKLSTLQRLTFI 245
Query: 340 RANKPGMNLIHYV 352
+ M ++YV
Sbjct: 246 KDTTNSMTFLNYV 258
>pdb|1Y64|B Chain B, Bni1p Formin Homology 2 Domain Complexed With Atp-actin
Length = 443
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 228 PQLDELEMLRNFD------GDKSRLGNAEKFLLQL-IQVPNYK-LRIESMLLKEEFATNM 279
P + E +RN + D + L A++ LQL + + +Y R+ ++ + +
Sbjct: 157 PYSTDWEGVRNLEDAKPPEKDPNDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREY 216
Query: 280 SYLEPSINSMIVAGEDLMSNKALQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDI 339
+ L + + A L + L+ V +++ GNF+N + A G KLS+LQ+LT I
Sbjct: 217 NELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDT--SKQAQGFKLSTLQRLTFI 274
Query: 340 RANKPGMNLIHYV 352
+ M ++YV
Sbjct: 275 KDTTNSMTFLNYV 287
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,227,506
Number of Sequences: 62578
Number of extensions: 403212
Number of successful extensions: 909
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 870
Number of HSP's gapped (non-prelim): 25
length of query: 385
length of database: 14,973,337
effective HSP length: 101
effective length of query: 284
effective length of database: 8,652,959
effective search space: 2457440356
effective search space used: 2457440356
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)