RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16508
(385 letters)
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 221 bits (564), Expect = 1e-69
Identities = 54/202 (26%), Positives = 112/202 (55%)
Query: 178 ILLLDGKRSLNVNIFLKQFRSSNEDIIHLIKNGDHDEIGTEKLRGLLKILPQLDELEMLR 237
+ +LD K + N++IFL FR ++I ++I + + ++ L+K +P+ ++L+ML
Sbjct: 9 LKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLS 68
Query: 238 NFDGDKSRLGNAEKFLLQLIQVPNYKLRIESMLLKEEFATNMSYLEPSINSMIVAGEDLM 297
+ L +E+F + + VP + R+ ++L K +F+ + ++P I S+ A E+L
Sbjct: 69 ELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELR 128
Query: 298 SNKALQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDIRANKPGMNLIHYVALQAE 357
++ +L + + GN++N+G A G +S L KL D ++ M L+H++A E
Sbjct: 129 KSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCE 188
Query: 358 KKRKELLNFTEDMGFLEEATKL 379
E+L F +++ +E+A+++
Sbjct: 189 NDHPEVLKFPDELAHVEKASRV 210
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 219 bits (560), Expect = 1e-67
Identities = 54/202 (26%), Positives = 112/202 (55%)
Query: 178 ILLLDGKRSLNVNIFLKQFRSSNEDIIHLIKNGDHDEIGTEKLRGLLKILPQLDELEMLR 237
+ +LD K + N++IFL FR ++I ++I + + ++ L+K +P+ ++L+ML
Sbjct: 80 LKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLS 139
Query: 238 NFDGDKSRLGNAEKFLLQLIQVPNYKLRIESMLLKEEFATNMSYLEPSINSMIVAGEDLM 297
+ L +E+F + + VP + R+ ++L K +F+ + ++P I S+ A E+L
Sbjct: 140 ELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELR 199
Query: 298 SNKALQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDIRANKPGMNLIHYVALQAE 357
++ +L + + GN++N+G A G +S L KL D ++ M L+H++A E
Sbjct: 200 KSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCE 259
Query: 358 KKRKELLNFTEDMGFLEEATKL 379
E+L F +++ +E+A+++
Sbjct: 260 NDHPEVLKFPDELAHVEKASRV 281
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 203 bits (518), Expect = 4e-61
Identities = 58/204 (28%), Positives = 123/204 (60%), Gaps = 3/204 (1%)
Query: 178 ILLLDGKRSLNVNIFLKQFRSSNEDIIHLIKNGD-HDEIGTEKLRGLLKILPQLDELEML 236
+ ++DG+R+ N NI L + + SN++I I D +++ + L LLK +P+ ++++L
Sbjct: 90 LSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLL 149
Query: 237 RNFDGDKSRLGNAEKFLLQLIQVPNYKLRIESMLLKEEFATNMSYLEPSINSMIVAGEDL 296
+ R+ A++FL ++ ++ +Y+ R++S+ K++FA ++ ++P + ++ E++
Sbjct: 150 EEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEV 209
Query: 297 MSNKALQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQKLTDIRAN-KPGMNLIHYVALQ 355
+ AL+++L +V+ GN++N G GNA G K+SSL K+ D +++ + L+HY+
Sbjct: 210 FRSGALKQLLEVVLAFGNYMN-KGQRGNAYGFKISSLNKIADTKSSIDKNITLLHYLITI 268
Query: 356 AEKKRKELLNFTEDMGFLEEATKL 379
E K +LN E++ + +A K+
Sbjct: 269 VENKYPSVLNLNEELRDIPQAAKV 292
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A
{Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B*
1ux4_A
Length = 411
Score = 182 bits (464), Expect = 6e-54
Identities = 49/225 (21%), Positives = 87/225 (38%), Gaps = 25/225 (11%)
Query: 178 ILLLDGKRSLNVNIFLKQFRS-SNEDIIHLIKNGDHDEIGTEKLRGLL------------ 224
I L S I L + S S D++ I N D D + T + L
Sbjct: 69 ITFLSRDISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNL 128
Query: 225 --KILPQLDELEMLRNF------DGDKSRLGNAEKFLLQLIQ--VPNYKLRIESMLLKEE 274
P + E +RN + D + L A++ LQL+ + R+ ++ +
Sbjct: 129 ARNYAPYSTDWEGVRNLEDAKPPEKDPNDLQRADQIYLQLMVNLESYWGSRMRALTVVTS 188
Query: 275 FATNMSYLEPSINSMIVAGEDLMSNKALQEVLYMVICAGNFLNSGGYAGNAAGVKLSSLQ 334
+ + L + + A L + L+ V +++ GNF+N A G KLS+LQ
Sbjct: 189 YEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDTS--KQAQGFKLSTLQ 246
Query: 335 KLTDIRANKPGMNLIHYVALQAEKKRKELLNFTEDMGFLEEATKL 379
+LT I+ M ++YV +F ++ + + K+
Sbjct: 247 RLTFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLSELEPVLDVVKV 291
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO
proteins, formins, armadillo repeat, G-protein, GTPase,
alternative splicing; HET: GNP; 2.70A {Mus musculus}
PDB: 1z2c_B*
Length = 383
Score = 73.8 bits (180), Expect = 1e-14
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 51 LRQYDLSVQLDVFDEQKESDEAQILGAPDGV--DLNSHLDVFYAVLRQVAETPQEIPFLS 108
+ D+ VQL VFDEQ + D + G D + +++ +VF +L V ++ E FLS
Sbjct: 276 IENEDMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLS 335
Query: 109 ILQHLLRIDPKEAVSDIIWDTAETLVHRATLLESRQD 145
ILQHLL + + E V + L ++ D
Sbjct: 336 ILQHLLLVRNDYEARPQYYKLIEECVSQIVLHKNGTD 372
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; 2.4A {Mus musculus} SCOP:
a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Length = 386
Score = 63.0 bits (152), Expect = 4e-11
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 55 DLSVQLDVFDEQKESDEAQILGAPDGV--DLNSHLDVFYAVLRQVAETPQEIPFLSILQH 112
D+ VQL VFDEQ + D + G D + +++ +VF +L V ++ E FLSILQH
Sbjct: 218 DMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSILQH 277
Query: 113 LLRIDPKEAVSDIIWDTAETLVHRATLLESRQDATKLLRS 152
LL + + E V + L ++ D R
Sbjct: 278 LLLVRNDYEARPQYYKLIEECVSQIVLHKNGTDPDFKCRH 317
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 5e-07
Identities = 55/329 (16%), Positives = 95/329 (28%), Gaps = 94/329 (28%)
Query: 45 DVFYAVLRQY--DLSVQLDVFDEQKE--SDEA--QILGAPDGVDLNSHLDVFYAVLRQVA 98
D+ + + + DV D K S E I+ + D ++ L +F+ +L +
Sbjct: 20 DILSVFEDAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKD--AVSGTLRLFWTLLSKQE 76
Query: 99 ETPQEI---------PFLSILQHLLRIDPK------EAVSDIIWDTAETL----VHRATL 139
E Q+ FL + P D +++ + V R
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 140 LESRQDATKLLRSPSLQNKLCCHGHRGFYLRNGLSYLLI-LLLDGK--RSLNVNIF---L 193
+ A LR + G G G +++ + + L K ++ IF L
Sbjct: 137 YLKLRQALLELRP---AKNVLIDGVLGS----GKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 194 KQFRSSNEDIIHL-----------IKNGDHD-------EIGTEKLRGLL--KILPQ---- 229
K S + L DH +LR LL K
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 230 LDEL---EMLRNFDG---------DKS---RLGNAEKFLLQLIQVPN--YKLRIESMLLK 272
L + + F+ K L A + L ++S+LLK
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 273 EEFATNMSYLE-P----SIN----SMIVA 292
+ + P + N S+I
Sbjct: 310 ---YLDCRPQDLPREVLTTNPRRLSIIAE 335
Score = 44.8 bits (105), Expect = 4e-05
Identities = 36/227 (15%), Positives = 69/227 (30%), Gaps = 58/227 (25%)
Query: 40 LNSHLDVFYAVLRQYDLS---VQLDVFDEQKESDEAQILGAPDGVDLNSH-LDVFYAVLR 95
L + ++ VL + +L VF P + + L + + +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVF--------------PPSAHIPTILLSLIWFDV- 399
Query: 96 QVAETPQEIPFLSILQHLLRIDPKEAVS---DIIWDTAETL-----VHRATLLESRQDAT 147
+ + L+ PKE+ I + L +HR ++++
Sbjct: 400 -IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR-SIVDHYNIPK 457
Query: 148 KL----LRSPSLQNKLCCH-GHRGFYLRNGLSYLLI--LLLDGKRSLNVNIFLKQ----- 195
L P L H GH + + L + LD FL+Q
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD----FR---FLEQKIRHD 510
Query: 196 -----FRSSNEDIIHLIKN-----GDHDEIGTEKLRGLLKILPQLDE 232
S + + +K D+D + +L LP+++E
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Score = 36.4 bits (83), Expect = 0.017
Identities = 47/294 (15%), Positives = 95/294 (32%), Gaps = 75/294 (25%)
Query: 86 HLDVFYAVLRQVAETPQEIPFLSILQHLLRIDPKEAVSDI-IWDTAETLVHRATLLESRQ 144
H+D + E + + IL V + D + ++ L S++
Sbjct: 6 HMDF------ETGE--HQYQYKDILSVFE----DAFVDNFDCKDVQDMP--KSIL--SKE 49
Query: 145 DATKLLRSPSLQNKLCCHGHRGFYLRNGLSYLLILLLDGKRSLNVNIFLKQFRSSNEDII 204
+ ++ S + L L K+ V F+++ N +
Sbjct: 50 EIDHIIMSKDAVSGT---------------LRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 205 HLIKNGDHDEIGTEKLRGLLKILPQLDELEMLRNFDGDKSRLGNAEKFLLQLIQVPNYKL 264
I TE+ + P + R + + RL N + + V
Sbjct: 95 -------MSPIKTEQRQ------PSMMT----RMYIEQRDRLYNDNQVFAKY-NVS---- 132
Query: 265 RIESML-LKEEFATNMSYLEPS----INSMIVAGEDLMSNKALQEVLYMVICAGNF---- 315
R++ L L++ + L P+ I+ ++ +G+ ++ Y V C +F
Sbjct: 133 RLQPYLKLRQ----ALLELRPAKNVLIDGVLGSGKTWVALDVCLS--YKVQCKMDFKIFW 186
Query: 316 LNSGGYAGNAAGVKLSSLQKLTDIRANKPGMNLIHYVA---LQAEKKRKELLNF 366
LN N+ L LQKL + + + + + L+ + EL
Sbjct: 187 LNLKNC--NSPETVLEMLQKLL-YQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 6e-05
Identities = 59/371 (15%), Positives = 110/371 (29%), Gaps = 96/371 (25%)
Query: 45 DVFYAVLRQYDLSVQLDVFDEQKESDE--AQILGAPDGVDLNSHLDVFYAVLRQVAETPQ 102
+ F +L + D DE E + LG + V V +
Sbjct: 35 EQFNKILPEPTEGFAAD--DEPTTPAELVGKFLG-------------Y--VSSLVEPSKV 77
Query: 103 EIPFLSILQHLLRIDPKEAVSDIIWDTAETLVH-RATLLESRQDATKLLRSPSLQN--KL 159
F +L L E + + +H A L D T + ++N
Sbjct: 78 G-QFDQVLNLCLT----EFENCYLEGND---IHALAAKLLQENDTTLVKTKELIKNYITA 129
Query: 160 CCHGHRGFYLRNGLSYLLILLLDGKRSL--------NVNIFLKQFR----SSNEDIIHLI 207
R F + S L + +G L N + + ++ R + + + LI
Sbjct: 130 RIMAKRPF-DKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI 188
Query: 208 KNGDHDEIGTEKLRGLL-------KILPQ-LDELEMLRNFDG--DKSRLGNAE-KF-LLQ 255
+ E L L+ K+ Q L+ LE L N DK L + L+
Sbjct: 189 ------KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG 242
Query: 256 LIQVPNYKLRIESM-LLKEEFATNMSYLEPSINSMIVA--------GEDLMSN--KALQE 304
+IQ+ +Y + + + E + + ++ A E + KA+
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI-T 301
Query: 305 VLYMVICAG-----------NFLNSGGYAGNAA--------GVKLSSLQKLTDIRANK-- 343
VL+ + + L + +Q + + N
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN-KTNSHL 360
Query: 344 PGMNLIHYVAL 354
P + ++L
Sbjct: 361 PAGKQVE-ISL 370
Score = 40.8 bits (95), Expect = 8e-04
Identities = 82/496 (16%), Positives = 147/496 (29%), Gaps = 181/496 (36%)
Query: 9 SSND---LSVQLDVFDEQKESDEAQIL----------GAPDGVDLNSHL-------DV-F 47
ND L+ +L ++ +++ P NS L +
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 48 YAV-------------LRQ-YDLSVQL--DVFDEQKESDEAQILG--APDGVDLNSH--- 86
A+ LR Y L D+ A+ L +D
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF-----SAETLSELIRTTLDAEKVFTQ 211
Query: 87 -LDVFYAVLRQVAETPQE---------IPFLSILQ--------HLLRIDPKEAVSDIIWD 128
L++ L + TP + P + ++Q LL P E S +
Sbjct: 212 GLNI-LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG- 269
Query: 129 TAETLVHRATLLESRQDATKLLRSPSLQNKLCCHGHRGFYLRNGLSYLLILLLDGKRS-- 186
H L+ A + + S ++ F+ + + +L G R
Sbjct: 270 ---ATGHSQGLVT----AVAIAETDSWES---------FF-VSVRKAITVLFFIGVRCYE 312
Query: 187 --------------------------LNVN--------IFLKQFRSS---NEDI-IHLIK 208
L+++ ++ + S + + I L+
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV- 371
Query: 209 NGDHDEI--G-TEKLRGL------LKILPQLDELEMLRNFDGDKSRLGNAEKFLLQLIQV 259
NG + + G + L GL K LD+ + F K + N +FL +
Sbjct: 372 NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP--FSERKLKFSN--RFL--PVAS 425
Query: 260 P---NYKL-----RIESMLLKEEFATNMSYLE-PSINSMIVAGEDL--MSNKALQEVLYM 308
P + L I L+K + N ++ P ++ G DL +S + ++
Sbjct: 426 PFHSHL-LVPASDLINKDLVKNNVSFNAKDIQIPVYDT--FDGSDLRVLSGSISERIVDC 482
Query: 309 VIC------------AGNFLNSGGYAGNAAGVKLSSLQKLTDIRANKPGMNLIHYVALQA 356
+I A + L+ G G A+G L LT + G+ +I L
Sbjct: 483 IIRLPVKWETTTQFKATHILDFG--PGGASG-----LGVLTHRNKDGTGVRVIVAGTLDI 535
Query: 357 EKKRKELLNFTEDMGF 372
N +D GF
Sbjct: 536 --------NPDDDYGF 543
Score = 38.1 bits (88), Expect = 0.006
Identities = 55/300 (18%), Positives = 88/300 (29%), Gaps = 109/300 (36%)
Query: 126 IWDTAETLVH-RATLLESRQDATKLLRSPSLQNKLCCH--GHRGFYLRNGLSYLLI-LLL 181
+W+ A+ H + T S D +P L H G +G +R S ++ ++
Sbjct: 1645 VWNRADN--HFKDTYGFSILDIVI--NNP---VNLTIHFGGEKGKRIRENYSAMIFETIV 1697
Query: 182 DGKRSLNVNIFLKQFRSSNEDIIHLIKNGDHDEIGTEKLRGLLKILPQLDELEMLRNFDG 241
DGK K F+ NE F
Sbjct: 1698 DGKLK-----TEKIFKEINEHSTSYT-------------------------------FRS 1721
Query: 242 DKSRLG---NA-------EKFLLQLIQ----VPNYK-------------------LRIES 268
+K L EK + ++ +P + IES
Sbjct: 1722 EKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIES 1781
Query: 269 M--LLKE-----EFATNMSYLEPSINSMIVAGEDLMSNKALQEVL-YMVICAG------- 313
+ ++ + A L S MI ++ QE L Y+V G
Sbjct: 1782 LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV 1841
Query: 314 ---NFLNSGG--YAGNAAGVKLSSLQKLTDIRANKPGMNLIHYVALQA----EKKRKELL 364
N+ N Y AAG L +L +T++ N + I + LQ E+ L
Sbjct: 1842 EIVNY-NVENQQYV--AAG-DLRALDTVTNV-LNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 31.2 bits (70), Expect = 0.69
Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 52/148 (35%)
Query: 29 AQILGAPDGVDLNSHLDVFY-------AVLRQYDLSVQLDVFDEQKESDEAQILGAPDGV 81
A ++ V++ VFY AV R DE S+ I P V
Sbjct: 1774 ADVMSIESLVEV-----VFYRGMTMQVAVPR-----------DELGRSNYGMIAINPGRV 1817
Query: 82 DLNSHLDVFYAVLRQVAETPQEIPFLSI-------LQ-----HLLRIDPKEAVSDIIWDT 129
+ + V+ +V + + I Q L A+
Sbjct: 1818 AASFSQEALQYVVERVGKRTGW--LVEIVNYNVENQQYVAAGDL------RAL------- 1862
Query: 130 AETLVHRATLLESRQ-DATKLLRSPSLQ 156
+T+ + ++ ++ D +L +S SL+
Sbjct: 1863 -DTVTNVLNFIKLQKIDIIELQKSLSLE 1889
>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn-
helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP:
a.75.1.1
Length = 218
Score = 29.0 bits (65), Expect = 2.0
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 5/52 (9%)
Query: 155 LQNKLCCHGHRGFYLRNGLSYLLILLLDGKRSLNVNIFLKQFRSSNEDIIHL 206
L NK+ G + + L+ K+ + + F II
Sbjct: 70 LINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAF-----KIIEK 116
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase,
translation; 3.40A {Homo sapiens} SCOP: a.173.1.1
d.218.1.4
Length = 448
Score = 29.1 bits (65), Expect = 2.6
Identities = 21/152 (13%), Positives = 45/152 (29%), Gaps = 33/152 (21%)
Query: 176 LLILLLDGKRSLNVNIFLKQFRSSNEDIIHLIKNGDHDEIGTEKLRGLLKILPQLDELEM 235
L L +V + + + E+ + + + L+K D L+
Sbjct: 310 LASLFKVQD---DVTKLDLRLKIAKEEKNLGLFIVKN-------RKDLIKATDSSDPLKP 359
Query: 236 LRNFDGDKSRLGNAEKFLLQLIQVPNYKLRIESMLLKEEFATNMSYLEPSINSMIVAGED 295
++F D R +A + +L++ ++ M SI V+G D
Sbjct: 360 YQDFIIDS-REPDATTRVCELLKYQGEHCLLKEMQQW------------SIPPFPVSGHD 406
Query: 296 LMSN---------KALQEVLYMVICAGNFLNS 318
+ LQ++ +
Sbjct: 407 IRKVGISSGKEIGALLQQLREQWK-KSGYQME 437
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein
complex, armadillo repeats, structural protein; 2.10A
{Mus musculus}
Length = 233
Score = 28.2 bits (62), Expect = 4.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 3 KKKKSDSSNDLSVQLDVFDEQKESDEAQ 30
++ + + D+ VQL VFDEQ + D
Sbjct: 205 QELREIENEDMKVQLCVFDEQGDEDFFD 232
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase;
HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB:
1k47_A* 3gon_A*
Length = 337
Score = 28.4 bits (63), Expect = 4.5
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 9/59 (15%)
Query: 192 FLKQFRSSNEDIIHLIKNGDHDEIGT--EKLRGLLKIL------PQLDEL-EMLRNFDG 241
FL + + ++ ++ G ++I E LL+ L P L +L E ++
Sbjct: 230 FLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQA 288
>3grl_A General vesicular transport factor P115; vesicle transport,
membrane trafficking, membrane tethering, fusion, snare,
RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB:
3gq2_A 2w3c_A
Length = 651
Score = 28.2 bits (62), Expect = 5.4
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 128 DTAETLVHR---ATLLESRQDATKLLRSPSLQNKL 159
+T + L R +TLL+ R++A + L+S S + +L
Sbjct: 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRL 55
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 5.6
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 9/27 (33%)
Query: 83 LNSHLDVFYAVLRQVAETPQEIPFLSI 109
L + L + YA P L+I
Sbjct: 25 LQASLKL-YA--------DDSAPALAI 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.376
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,692,843
Number of extensions: 349069
Number of successful extensions: 671
Number of sequences better than 10.0: 1
Number of HSP's gapped: 656
Number of HSP's successfully gapped: 26
Length of query: 385
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 290
Effective length of database: 4,049,298
Effective search space: 1174296420
Effective search space used: 1174296420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.4 bits)