BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16509
(123 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CG3|A Chain A, Structure Of The Mutant (R143l) Of Adenylosuccinate
Synthetase From E. Coli Complexed With Hadacidin, Gdp,
6-Phosphoryl-Imp, And Mg2+
Length = 431
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 32 AEAVDYQTV------ILAFINCLIISTPQLNDRIRIRNEFIGVTG 70
AEAVDYQ V + + +++ L D+ R R +F+ G
Sbjct: 178 AEAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEG 222
>pdb|1CG1|A Chain A, Structure Of The Mutant (K16q) Of Adenylosuccinate
Synthetase From E. Coli Complexed With Hadacidin, Gdp,
6-Phosphoryl-Imp, And Mg2+
Length = 431
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 32 AEAVDYQTV------ILAFINCLIISTPQLNDRIRIRNEFIGVTG 70
AEAVDYQ V + + +++ L D+ R R +F+ G
Sbjct: 178 AEAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEG 222
>pdb|1CG4|A Chain A, Structure Of The Mutant (R303l) Of Adenylosuccinate
Synthetase From E. Coli Complexed With, Gdp,
6-Phosphoryl-Imp, And Mg2+
Length = 431
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 32 AEAVDYQTV------ILAFINCLIISTPQLNDRIRIRNEFIGVTG 70
AEAVDYQ V + + +++ L D+ R R +F+ G
Sbjct: 178 AEAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEG 222
>pdb|1HON|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degree Celsius
pdb|1HON|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degree Celsius
pdb|1HOP|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degrees Celsius
pdb|1HOP|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degrees Celsius
Length = 431
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 32 AEAVDYQTV------ILAFINCLIISTPQLNDRIRIRNEFIGVTG 70
AEAVDYQ V + + +++ L D+ R R +F+ G
Sbjct: 178 AEAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEG 222
>pdb|1CG0|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With Hadacidin, Gdp, 6-Phosphoryl-Imp, And
Mg2+
pdb|1CH8|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With A Stringent Effector, Ppg2':3'p
pdb|1QF4|A Chain A, Design, Synthesis, And X-Ray Crystal Structure Of An
Enzyme Bound Bisubstrate Hybrid Inhibitor Of
Adenylosuccinate Synthetase
pdb|1QF5|A Chain A, Design, Synthesis, And X-Ray Crystal Structure Of An
Enzyme Bound Bisubstrate Hybrid Inhibitor Of
Adenylosuccinate Synthetase
pdb|1CIB|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With Gdp, Imp, Hadacidin, And No3
pdb|2GCQ|A Chain A, Fully Ligated E.Coli Adenylosuccinate Synthetase With Gtp,
2'-Deoxy- Imp And Hadacidin
pdb|1SON|A Chain A, Adenylosuccinate Synthetase In Complex With The Natural
Feedback Inhibitor Amp
pdb|1SOO|A Chain A, Adenylosuccinate Synthetase Inhibited By Hydantocidin
5'-Monophosphate
pdb|1ADE|A Chain A, Structure Of Adenylosuccinate Synthetase Ph 7 At 25
Degrees Celsius
pdb|1ADE|B Chain B, Structure Of Adenylosuccinate Synthetase Ph 7 At 25
Degrees Celsius
pdb|1ADI|A Chain A, Structure Of Adenylosuccinate Synthetase At Ph 6.5 And 25
Degrees Celsius
pdb|1ADI|B Chain B, Structure Of Adenylosuccinate Synthetase At Ph 6.5 And 25
Degrees Celsius
pdb|1HOO|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From E. Coli At Ph 6.5 And
25 Degrees Celsius
pdb|1HOO|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From E. Coli At Ph 6.5 And
25 Degrees Celsius
pdb|1GIM|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase From
Escherichia Coli Complexed With Gdp, Imp, Hadacidin,
No3-, And Mg2+. Data Collected At 100k (Ph 6.5)
pdb|1GIN|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase From
Escherichia Coli Complexed With Gdp, Imp, Hadacidin,
No3-, And Mg2+. Data Collected At 298k (Ph 6.5).
pdb|1KSZ|A Chain A, Entrapment Of 6-Thiophosphoryl-Imp In The Active Site Of
Crystalline Adenylosuccinate Synthetase From Escherichia
Coli, Data Collected At 298k
pdb|1NHT|A Chain A, Entrapment Of 6-Thiophosphoryl-Imp In The Active Site Of
Crystalline Adenylosuccinate Synthetase From Escherichia
Coli Data Collected At 100k
pdb|1JUY|A Chain A, Refined Crystal Structure Of Adenylosuccinate Synthetase
From Escherichia Coli Complexed With Hydantocidin 5'-
Phosphate Gdp, Hpo4(2-), Mg2+, And Hadacidin
Length = 431
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 32 AEAVDYQTV------ILAFINCLIISTPQLNDRIRIRNEFIGVTG 70
AEAVDYQ V + + +++ L D+ R R +F+ G
Sbjct: 178 AEAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEG 222
>pdb|1KJX|A Chain A, Imp Complex Of E. Coli Adenylosuccinate Synthetase
pdb|1KKB|A Chain A, Complex Of Escherichia Coli Adenylosuccinate Synthetase
With Imp And Hadacidin
pdb|1KKF|A Chain A, Complex Of E. Coli Adenylosuccinate Synthetase With Imp,
Hadacidin, Pyrophosphate, And Mg
Length = 432
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 32 AEAVDYQTV------ILAFINCLIISTPQLNDRIRIRNEFIGVTG 70
AEAVDYQ V + + +++ L D+ R R +F+ G
Sbjct: 179 AEAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEG 223
>pdb|1AII|A Chain A, Annexin Iii
Length = 323
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 11 PQKTLKNERYR---LKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIG 67
PQ L + YR K +VD ++ + ++ ++LA +NC+ + L +R+ + IG
Sbjct: 207 PQLKLTFDEYRNISQKDIVDSIKGELSGHFEDLLLAIVNCVRNTPAFLAERLHRALKGIG 266
Query: 68 VTGPTCVRI 76
T RI
Sbjct: 267 TDEFTLNRI 275
>pdb|1AXN|A Chain A, The High Resolution Structure Of Annexin Iii Shows
Differences With Annexin V
Length = 323
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 11 PQKTLKNERYR---LKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIG 67
PQ L + YR K +VD ++ + ++ ++LA +NC+ + L +R+ + IG
Sbjct: 207 PQLKLTFDEYRNISQKDIVDSIKGELSGHFEDLLLAIVNCVRNTPAFLAERLHRALKGIG 266
Query: 68 VTGPTCVRI 76
T RI
Sbjct: 267 TDEFTLNRI 275
>pdb|2VQU|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VQU|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
Length = 846
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 6 GQSRRPQKTLKNE--RYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIR- 62
G + + + ++NE YR +V E E ++ + L F + LN + ++
Sbjct: 50 GMNEKKIQWVENEDWEYRTSFIVSE----EQLNRDGIQLIFEGLDTYADVYLNGSLLLKA 105
Query: 63 -NEFIGVTGPTCVRIKPWANHMFFYLFS 89
N F+G T P ++ NH++ Y S
Sbjct: 106 DNMFVGYTLPVKSVLRKGENHLYIYFHS 133
>pdb|2WBK|A Chain A, Structure Of The Michaelis Complex Of Beta-Mannosidase,
Man2a, Provides Insight Into The Conformational
Itinerary Of Mannoside Hydrolysis
pdb|2WBK|B Chain B, Structure Of The Michaelis Complex Of Beta-Mannosidase,
Man2a, Provides Insight Into The Conformational
Itinerary Of Mannoside Hydrolysis
Length = 847
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 6 GQSRRPQKTLKNE--RYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIR- 62
G + + + ++NE YR +V E E ++ + L F + LN + ++
Sbjct: 50 GMNEKKIQWVENEDWEYRTSFIVSE----EQLNRDGIQLIFEGLDTYADVYLNGSLLLKA 105
Query: 63 -NEFIGVTGPTCVRIKPWANHMFFYLFS 89
N F+G T P ++ NH++ Y S
Sbjct: 106 DNMFVGYTLPVKSVLRKGENHLYIYFHS 133
>pdb|2JE8|A Chain A, Structure Of A Beta-Mannosidase From Bacteroides
Thetaiotaomicron
pdb|2JE8|B Chain B, Structure Of A Beta-Mannosidase From Bacteroides
Thetaiotaomicron
Length = 848
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 6 GQSRRPQKTLKNE--RYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIR- 62
G + + + ++NE YR +V E E ++ + L F + LN + ++
Sbjct: 52 GMNEKKIQWVENEDWEYRTSFIVSE----EQLNRDGIQLIFEGLDTYADVYLNGSLLLKA 107
Query: 63 -NEFIGVTGPTCVRIKPWANHMFFYLFS 89
N F+G T P ++ NH++ Y S
Sbjct: 108 DNMFVGYTLPVKSVLRKGENHLYIYFHS 135
>pdb|2VJX|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VJX|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VL4|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VL4|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VMF|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VMF|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VO5|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VO5|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VOT|A Chain A, Structural And Biochemical Evidence For A Boat-like
Transition State In Beta-mannosidases
pdb|2VOT|B Chain B, Structural And Biochemical Evidence For A Boat-like
Transition State In Beta-mannosidases
pdb|2VQT|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VQT|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VR4|A Chain A, Transition-state Mimicry In Mannoside Hydrolysis:
Characterisation Of Twenty Six Inhibitors And Insight
Into Binding From Linear Free Energy Relationships And
3-d Structure
pdb|2VR4|B Chain B, Transition-state Mimicry In Mannoside Hydrolysis:
Characterisation Of Twenty Six Inhibitors And Insight
Into Binding From Linear Free Energy Relationships And
3-d Structure
Length = 846
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 6 GQSRRPQKTLKNE--RYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIR- 62
G + + + ++NE YR +V E E ++ + L F + LN + ++
Sbjct: 50 GMNEKKIQWVENEDWEYRTSFIVSE----EQLNRDGIQLIFEGLDTYADVYLNGSLLLKA 105
Query: 63 -NEFIGVTGPTCVRIKPWANHMFFYLFS 89
N F+G T P ++ NH++ Y S
Sbjct: 106 DNMFVGYTLPVKSVLRKGENHLYIYFHS 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,515,290
Number of Sequences: 62578
Number of extensions: 70923
Number of successful extensions: 196
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 196
Number of HSP's gapped (non-prelim): 13
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)