Query psy16509
Match_columns 123
No_of_seqs 118 out of 182
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 23:07:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16509.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16509hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f31_A Diaphanous protein homo 99.8 5.8E-22 2E-26 153.8 2.8 92 2-94 126-228 (233)
2 2bnx_A Diaphanous protein homo 99.8 1.2E-19 4.1E-24 150.8 3.9 91 2-93 130-231 (386)
3 3eg5_B Protein diaphanous homo 99.8 1.4E-19 4.6E-24 150.6 3.5 90 6-96 198-296 (383)
4 3dad_A FH1/FH2 domain-containi 92.7 0.072 2.5E-06 44.5 3.3 73 18-90 252-332 (339)
5 4dvg_B Diaphanous protein; cyt 91.1 0.21 7.2E-06 40.9 4.2 61 20-81 220-280 (353)
6 2z16_A Matrix protein 1, M1; A 27.6 77 0.0026 24.0 4.3 55 18-72 42-98 (165)
7 3bbo_G Ribosomal protein L4; l 26.9 14 0.00047 30.3 0.1 8 68-75 234-241 (293)
8 3izc_W 60S ribosomal protein R 20.0 31 0.0011 25.0 0.8 25 68-92 87-115 (121)
9 3gs3_A Symplekin, LD45768P; he 14.6 98 0.0033 24.1 2.5 45 1-48 193-238 (257)
10 3o2t_A Symplekin; heat repeat, 14.0 88 0.003 26.1 2.2 45 1-48 206-251 (386)
No 1
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=99.83 E-value=5.8e-22 Score=153.78 Aligned_cols=92 Identities=18% Similarity=0.293 Sum_probs=77.1
Q ss_pred ccc-cc-cc-----hhhhHhhhccccchHHHHHHhhhccChhHHHHHHHHhhhhhcCCCCccchhhhhhhhccCCcchhh
Q psy16509 2 VSQ-IG-QS-----RRPQKTLKNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGVTGPTCV 74 (123)
Q Consensus 2 v~~-~g-~~-----~~~fK~~~~Er~RF~~IV~~L~~~~nv~ykvacMqFINalI~s~edL~fRihLRnEF~~LGL~d~L 74 (123)
+|. .| |. +.+|+. ++++.||+++|++|+++.+++|++|||+|||+||++|+++++|+|||+||+++||.++|
T Consensus 126 ~~~~~G~~~~VL~Al~~~~~-~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il 204 (233)
T 2f31_A 126 LPQPEDMNERVLEAMTERAE-MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL 204 (233)
T ss_dssp CSSSSCHHHHHHHHHHHHHH-HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHH-hCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH
Confidence 455 58 76 688876 57999999999999988899999999999999999999999999999999999999988
Q ss_pred hcCccccc----cceeecccchhh
Q psy16509 75 RIKPWANH----MFFYLFSTEEEE 94 (123)
Q Consensus 75 ~~~~~~~~----~~f~lfs~eeE~ 94 (123)
++.+.... .|+..|....++
T Consensus 205 ~~l~~~~~~~L~~Qi~~fe~~~~e 228 (233)
T 2f31_A 205 QELREIENEDMKVQLCVFDEQGDE 228 (233)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHHh
Confidence 87664332 577677554433
No 2
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=99.77 E-value=1.2e-19 Score=150.82 Aligned_cols=91 Identities=18% Similarity=0.283 Sum_probs=77.0
Q ss_pred ccc-cc-cc-----hhhhHhhhccccchHHHHHHhhhccChhHHHHHHHHhhhhhcCCCCccchhhhhhhhccCCcchhh
Q psy16509 2 VSQ-IG-QS-----RRPQKTLKNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGVTGPTCV 74 (123)
Q Consensus 2 v~~-~g-~~-----~~~fK~~~~Er~RF~~IV~~L~~~~nv~ykvacMqFINalI~s~edL~fRihLRnEF~~LGL~d~L 74 (123)
+|. .| |. +.+|+. ++++.||++||++|+++.+++|++|||+|||+||++++++++|+|||+||+++||.++|
T Consensus 130 ~~~~~G~~~~VL~Al~~~~~-~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il 208 (386)
T 2bnx_A 130 LPQPEDMNERVLEAMTERAE-MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL 208 (386)
T ss_dssp CCSSTTHHHHHHHHHHHHHH-HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHH-hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH
Confidence 454 47 76 588876 57999999999999988999999999999999999999999999999999999999988
Q ss_pred hcCccccc----cceeecccchh
Q psy16509 75 RIKPWANH----MFFYLFSTEEE 93 (123)
Q Consensus 75 ~~~~~~~~----~~f~lfs~eeE 93 (123)
.+.+.... .++..|....+
T Consensus 209 ~~Lr~~~~~~L~~Qi~~fe~~~~ 231 (386)
T 2bnx_A 209 QELREIENEDMKVQLCVFDEQGD 231 (386)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHhccCChhHHHHHHHHHHHHH
Confidence 87665433 57777765433
No 3
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=99.76 E-value=1.4e-19 Score=150.58 Aligned_cols=90 Identities=18% Similarity=0.273 Sum_probs=77.8
Q ss_pred ccc-----hhhhHhhhccccchHHHHHHhhhccChhHHHHHHHHhhhhhcCCCCccchhhhhhhhccCCcchhhhcCccc
Q psy16509 6 GQS-----RRPQKTLKNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGVTGPTCVRIKPWA 80 (123)
Q Consensus 6 g~~-----~~~fK~~~~Er~RF~~IV~~L~~~~nv~ykvacMqFINalI~s~edL~fRihLRnEF~~LGL~d~L~~~~~~ 80 (123)
||. +.+||. ++++.||++||++|++..+++|++|||+|||+||++++++++|+|||+||+++||.++|.+.+..
T Consensus 198 G~~~VL~Al~~~~~-~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~ 276 (383)
T 3eg5_B 198 MNERVLEAMTERAE-MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREI 276 (383)
T ss_dssp HHHHHHHHHHHHHH-HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHH-hCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcC
Confidence 477 689998 89999999999999988899999999999999999999999999999999999999988876644
Q ss_pred cc----cceeecccchhhhh
Q psy16509 81 NH----MFFYLFSTEEEEEE 96 (123)
Q Consensus 81 ~~----~~f~lfs~eeE~~~ 96 (123)
.. .|+..|....++++
T Consensus 277 ~~~~L~~Qi~~fe~~~~eD~ 296 (383)
T 3eg5_B 277 ENEDMKVQLCVFDEQGDEDF 296 (383)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHhH
Confidence 33 67888876544433
No 4
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=92.70 E-value=0.072 Score=44.54 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=56.8
Q ss_pred cccchHHHHHHhh--hccChhHHHHHHHHhhhhhcCCCCccchhhhhhhhccCCcchhhhc----Ccc--ccccceeecc
Q psy16509 18 ERYRLKVVVDELQ--NAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGVTGPTCVRI----KPW--ANHMFFYLFS 89 (123)
Q Consensus 18 Er~RF~~IV~~L~--~~~nv~ykvacMqFINalI~s~edL~fRihLRnEF~~LGL~d~L~~----~~~--~~~~~f~lfs 89 (123)
...+|+.||.-|+ .+.+.++++.+|++||+++.+.++=+.|-.+...+-.+|+-..+.. ... ....||++|-
T Consensus 252 ~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Ql~iyE 331 (339)
T 3dad_A 252 GAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQLVLYE 331 (339)
T ss_dssp CCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3446999999996 3568999999999999999998888878899999999999776554 211 2336887774
Q ss_pred c
Q psy16509 90 T 90 (123)
Q Consensus 90 ~ 90 (123)
.
T Consensus 332 ~ 332 (339)
T 3dad_A 332 N 332 (339)
T ss_dssp H
T ss_pred H
Confidence 3
No 5
>4dvg_B Diaphanous protein; cytoskeleton, armadillo repeat, GTPase-binding domain, nucle binding, signaling protein, lipoprotein; HET: GSP; 2.60A {Entamoeba histolytica}
Probab=91.05 E-value=0.21 Score=40.88 Aligned_cols=61 Identities=18% Similarity=0.264 Sum_probs=48.7
Q ss_pred cchHHHHHHhhhccChhHHHHHHHHhhhhhcCCCCccchhhhhhhhccCCcchhhhcCcccc
Q psy16509 20 YRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGVTGPTCVRIKPWAN 81 (123)
Q Consensus 20 ~RF~~IV~~L~~~~nv~ykvacMqFINalI~s~edL~fRihLRnEF~~LGL~d~L~~~~~~~ 81 (123)
..|-+...-+.++.+-.++-|.+.+||-+|..| +|.-|+..||-|+..||..-|...+|..
T Consensus 220 kkflsffslfsksksekfkhaslvlinnlidqp-elehrmdvrnsfieiglvnelenmknte 280 (353)
T 4dvg_B 220 KKFLSFFSLFSKSKSEKFKHASLVLINNLIDQP-ELEHRMDVRNSFIEIGLVNELENMKNTE 280 (353)
T ss_dssp STTHHHHHHHHHCCCHHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHTTTHHHHHHHHHTSG
T ss_pred HHHHHHHHHHhhhhhhhcccceeehhhccccch-hhHhhhhhhhhheeeehhhHhhhccCcc
Confidence 346666666677788899999999999999776 5999999999999999976666555443
No 6
>2z16_A Matrix protein 1, M1; AIV-7M1, H5N1, structural genomics; 2.02A {Influenza a virus} PDB: 3md2_A 1ea3_A 1aa7_A
Probab=27.56 E-value=77 Score=23.96 Aligned_cols=55 Identities=22% Similarity=0.304 Sum_probs=37.9
Q ss_pred cccchHHHHHHhhhccC-hhHHHHHHHHhhhhhc-CCCCccchhhhhhhhccCCcch
Q psy16509 18 ERYRLKVVVDELQNAEA-VDYQTVILAFINCLII-STPQLNDRIRIRNEFIGVTGPT 72 (123)
Q Consensus 18 Er~RF~~IV~~L~~~~n-v~ykvacMqFINalI~-s~edL~fRihLRnEF~~LGL~d 72 (123)
--.-...+|+||++..- -+++-+++.|+-|+.- +.-.|..|-.++|-+.+.|-..
T Consensus 42 kntDLealmEWlk~r~~ls~l~k~ilg~~~~~~~p~~~~~qrrrf~~~~l~g~g~~n 98 (165)
T 2z16_A 42 KNTDLEALMEWLKTRPILSPLTKGILGFVFTLTVPSERGLQRRRFVQNALNGNGDPN 98 (165)
T ss_dssp SCCCHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSCC-----CCHHHHHHHC---CHH
T ss_pred cccCHHHHHHHHhcCcccchHHhhhhheEEEEeccchhhHHHHHHHhccccCCCCcc
Confidence 34557899999987653 7889999999988875 4478999999999999988643
No 7
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=26.93 E-value=14 Score=30.25 Aligned_cols=8 Identities=0% Similarity=-0.155 Sum_probs=3.5
Q ss_pred CCcchhhh
Q psy16509 68 VTGPTCVR 75 (123)
Q Consensus 68 LGL~d~L~ 75 (123)
|+++++|+
T Consensus 234 LNvydLl~ 241 (293)
T 3bbo_G 234 LNLFDVLN 241 (293)
T ss_dssp CCHHHHHH
T ss_pred eeHHHhhC
Confidence 33344444
No 8
>3izc_W 60S ribosomal protein RPL22 (L22E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_W 3u5e_U 3u5i_U 4b6a_U
Probab=20.02 E-value=31 Score=24.99 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=11.1
Q ss_pred CCcchhhhcCccccc----cceeecccch
Q psy16509 68 VTGPTCVRIKPWANH----MFFYLFSTEE 92 (123)
Q Consensus 68 LGL~d~L~~~~~~~~----~~f~lfs~ee 92 (123)
-.|.|.|+-.-++.. .+|.+..+++
T Consensus 87 ~~LRDwlRVVa~~K~~YeLryf~I~~de~ 115 (121)
T 3izc_W 87 NQLRDWIRFVSTKTNEYRLAFYQVTPEED 115 (121)
T ss_dssp SSSCCCCCCSSSCSSCEEEECCCC-----
T ss_pred ccccceEEEEecCCCeEEEEEEeeCCCcc
Confidence 456677775444433 4566654433
No 9
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=14.61 E-value=98 Score=24.12 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=0.0
Q ss_pred CccccccchhhhHhhhccccc-hHHHHHHhhhccChhHHHHHHHHhhhh
Q psy16509 1 MVSQIGQSRRPQKTLKNERYR-LKVVVDELQNAEAVDYQTVILAFINCL 48 (123)
Q Consensus 1 ~v~~~g~~~~~fK~~~~Er~R-F~~IV~~L~~~~nv~ykvacMqFINal 48 (123)
+||. ||...++.....|-.+ |..+++.+......... .++.+|++
T Consensus 193 ~Vp~-~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~--l~a~lnsL 238 (257)
T 3gs3_A 193 DVPD-HCTLFRREKLQEEGNNILDILLQFHGTTHISSVN--LIACTSSL 238 (257)
T ss_dssp GSCS-SCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHH--HHHHHHHH
T ss_pred HCCC-CCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHH--HHHHHHHH
No 10
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=14.03 E-value=88 Score=26.06 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=0.0
Q ss_pred CccccccchhhhHhhhccccc-hHHHHHHhhhccChhHHHHHHHHhhhh
Q psy16509 1 MVSQIGQSRRPQKTLKNERYR-LKVVVDELQNAEAVDYQTVILAFINCL 48 (123)
Q Consensus 1 ~v~~~g~~~~~fK~~~~Er~R-F~~IV~~L~~~~nv~ykvacMqFINal 48 (123)
+||. ||...++.....|-.+ |..+++.|......+ +.++..||||
T Consensus 206 ~VP~-nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss--~~l~a~lnsL 251 (386)
T 3o2t_A 206 RIPR-DHPYIQYNVLWEEGKAALEQLLKFMVHPAISS--INLTTALGSL 251 (386)
T ss_dssp GSCT-TCSSSCHHHHHHHHHHHHHHHHHHTTC--CCH--HHHHHHHHHH
T ss_pred hCCC-CCCcCCHHHHHHHHHHHHHHHHHHHccccccc--HHHHHHHHHH
Done!