RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16509
(123 letters)
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 51.9 bits (124), Expect = 7e-09
Identities = 25/26 (96%), Positives = 25/26 (96%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S EEEEEEEEEEEEEEEEEEEEEEEE
Sbjct: 863 SEEEEEEEEEEEEEEEEEEEEEEEEE 888
Score = 51.1 bits (122), Expect = 1e-08
Identities = 24/24 (100%), Positives = 24/24 (100%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEEEEEEEEEEEEEEEEEEEEE
Sbjct: 866 EEEEEEEEEEEEEEEEEEEEEEEE 889
Score = 50.4 bits (120), Expect = 2e-08
Identities = 24/27 (88%), Positives = 24/27 (88%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFS 117
EEEEEEEEEEEEEEEEEEEEE EE S
Sbjct: 869 EEEEEEEEEEEEEEEEEEEEENEEPLS 895
Score = 50.0 bits (119), Expect = 3e-08
Identities = 23/24 (95%), Positives = 23/24 (95%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEEEEEEEEEEEEEEEEEEEE
Sbjct: 867 EEEEEEEEEEEEEEEEEEEEEEEN 890
Score = 49.6 bits (118), Expect = 4e-08
Identities = 23/24 (95%), Positives = 23/24 (95%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEEEEEEEEEEEEEEEEEEE E
Sbjct: 868 EEEEEEEEEEEEEEEEEEEEEENE 891
Score = 47.7 bits (113), Expect = 2e-07
Identities = 22/24 (91%), Positives = 23/24 (95%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+ EEEEEEEEEEEEEEEEEEEEEE
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEE 885
Score = 34.6 bits (79), Expect = 0.007
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+ + EEEEEEEEEEEEEEE
Sbjct: 855 GGGSDGGDSEEEEEEEEEEEEEEE 878
Score = 31.5 bits (71), Expect = 0.095
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+ + + EEEEEEEEEEEEE
Sbjct: 853 DGGGGSDGGDSEEEEEEEEEEEEE 876
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 42.0 bits (98), Expect = 2e-05
Identities = 14/26 (53%), Positives = 25/26 (96%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVF 116
++E+E+E++++EE++EEEEEEEEE+
Sbjct: 156 DDEDEDEDDDDEEDDEEEEEEEEEIK 181
Score = 39.3 bits (91), Expect = 2e-04
Identities = 13/27 (48%), Positives = 25/27 (92%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEE 114
F ++++E+E+E++++EE++EEEEEEE
Sbjct: 151 FVIDDDDEDEDEDDDDEEDDEEEEEEE 177
Score = 32.7 bits (74), Expect = 0.039
Identities = 8/24 (33%), Positives = 21/24 (87%)
Query: 95 EEEEEEEEEEEEEEEEEEEEVFSQ 118
++++E+E+E++++EE++EEE +
Sbjct: 154 DDDDEDEDEDDDDEEDDEEEEEEE 177
Score = 30.4 bits (68), Expect = 0.22
Identities = 15/28 (53%), Positives = 24/28 (85%), Gaps = 4/28 (14%)
Query: 91 EEEEEEEEEEEEEEEE----EEEEEEEE 114
+++EE++EEEEEEEEE ++E+EE+E
Sbjct: 164 DDDEEDDEEEEEEEEEIKGFDDEDEEDE 191
>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein. This
protein is covalently attached to the terminii of
replicating DNA in vivo.
Length = 548
Score = 40.4 bits (95), Expect = 8e-05
Identities = 21/28 (75%), Positives = 22/28 (78%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
EEEEEEEEE EEEEEEEEEEE F +
Sbjct: 305 PEEEEEEEEEVPEEEEEEEEEEERTFEE 332
Score = 38.9 bits (91), Expect = 2e-04
Identities = 21/24 (87%), Positives = 21/24 (87%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E EEEEEEEEE EEEEEEEEEEE
Sbjct: 304 EPEEEEEEEEEVPEEEEEEEEEEE 327
Score = 38.1 bits (89), Expect = 4e-04
Identities = 21/26 (80%), Positives = 21/26 (80%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S E EEEEEEEEE EEEEEEEEEE
Sbjct: 301 SPPEPEEEEEEEEEVPEEEEEEEEEE 326
Score = 37.3 bits (87), Expect = 8e-04
Identities = 21/28 (75%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEE-EEEV 115
EEEEEE EEEEEEEEEEE EEEV
Sbjct: 307 EEEEEEEEVPEEEEEEEEEEERTFEEEV 334
Score = 36.5 bits (85), Expect = 0.002
Identities = 17/25 (68%), Positives = 17/25 (68%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
E EEEEEEEEE EEEEEEE
Sbjct: 299 PPSPPEPEEEEEEEEEVPEEEEEEE 323
Score = 33.5 bits (77), Expect = 0.019
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 93 EEEEEEEEEEEEEEEEEEEEEEVFSQ 118
E EEEEEEEEE EEEEE +
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEE 325
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This
family includes the radial spoke head proteins RSP4 and
RSP6 from Chlamydomonas reinhardtii, and several
eukaryotic homologues, including mammalian RSHL1, the
protein product of a familial ciliary dyskinesia
candidate gene.
Length = 481
Score = 40.0 bits (94), Expect = 1e-04
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
+EEEE+E+EEEEEEEEE EE E E
Sbjct: 348 DEEEEQEDEEEEEEEEEPEEPEPEE 372
Score = 39.7 bits (93), Expect = 1e-04
Identities = 19/25 (76%), Positives = 21/25 (84%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
EEEE+E+EEEEEEEEE EE E EE
Sbjct: 348 DEEEEQEDEEEEEEEEEPEEPEPEE 372
Score = 38.9 bits (91), Expect = 2e-04
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 85 FYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+ ++EEEE+E+EEEEEEEEE EE E
Sbjct: 341 WVNPEQKDEEEEQEDEEEEEEEEEPEEPEP 370
Score = 38.1 bits (89), Expect = 4e-04
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEE+E+EEEEEEEEE EE E EE
Sbjct: 350 EEEQEDEEEEEEEEEPEEPEPEEG 373
Score = 37.7 bits (88), Expect = 7e-04
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQCT 120
E+E+EEEEEEEEE EE E EE + + +
Sbjct: 352 EQEDEEEEEEEEEPEEPEPEEGPPLLTPIS 381
Score = 33.9 bits (78), Expect = 0.012
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
E+++EEEE+E+EEEEEEEEE +
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPE 369
Score = 32.0 bits (73), Expect = 0.060
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 85 FYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
Y EEEEEEEEE E +E EE + E
Sbjct: 284 LYQLEEEEEEEEEEEPAERDELEENPDFEG 313
Score = 30.0 bits (68), Expect = 0.23
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 85 FYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+Y+ E E EEEEEEEE E +EE+E E
Sbjct: 160 YYVAEVELREGEEEEEEEEVGEADEEDEGE 189
Score = 29.6 bits (67), Expect = 0.39
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEEEEE E +EE+E EEEEE
Sbjct: 167 LREGEEEEEEEEVGEADEEDEGEEEEE 193
Score = 28.9 bits (65), Expect = 0.69
Identities = 16/25 (64%), Positives = 17/25 (68%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEVF 116
EEEEEEEEEEE E +E EE F
Sbjct: 287 LEEEEEEEEEEEPAERDELEENPDF 311
Score = 28.9 bits (65), Expect = 0.71
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEEEEE E +EE+E EEEEEE
Sbjct: 171 EEEEEEEEVGEADEEDEGEEEEEE 194
Score = 28.5 bits (64), Expect = 0.79
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
EEEE E +EE+E EEEEEEE EEV
Sbjct: 175 EEEEVGEADEEDEGEEEEEEEPEEV 199
Score = 28.1 bits (63), Expect = 1.1
Identities = 17/26 (65%), Positives = 19/26 (73%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEV 115
EEEEEE E +EE+E EEEEEEE
Sbjct: 172 EEEEEEEVGEADEEDEGEEEEEEEPE 197
Score = 26.9 bits (60), Expect = 2.6
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
E E E EEEEEEEE E +EE+E
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEG 188
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 37.7 bits (88), Expect = 2e-04
Identities = 19/24 (79%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEEEEEEEEEEEEE EEE
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEEE 95
Score = 36.6 bits (85), Expect = 4e-04
Identities = 19/23 (82%), Positives = 19/23 (82%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEE 112
EEEEEEEEEEEEEEEE EEE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEE 95
Score = 36.6 bits (85), Expect = 5e-04
Identities = 18/24 (75%), Positives = 18/24 (75%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEEEEEEEEEEEEE EE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEE 94
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 37.6 bits (88), Expect = 2e-04
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE++EEEEEEEE+EE EEE
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESEEE 96
Score = 36.5 bits (85), Expect = 5e-04
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE++EEEEEEEE+EE EE
Sbjct: 72 AAAAAAEEKKEEEEEEEEKEESEE 95
Score = 36.5 bits (85), Expect = 6e-04
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE++EEEEEEEE+EE EEE
Sbjct: 76 AAEEKKEEEEEEEEKEESEEEAAA 99
Score = 34.5 bits (80), Expect = 0.002
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE++EEEEEEEE+EE E
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESE 94
Score = 30.7 bits (70), Expect = 0.081
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 94 EEEEEEEEEEEEEEEEEEEEEV 115
EE++EEEEEEEE+E
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEE 92
>gnl|CDD|219000 pfam06367, Drf_FH3, Diaphanous FH3 Domain. This region is found
in the Formin-like and and diaphanous proteins.
Length = 197
Score = 38.8 bits (91), Expect = 2e-04
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 13 KTLKNERYRLKVVVDELQNAEA--VDYQTVILAFINCLIISTPQLNDRIRIRNEFI 66
K + ER R + +V L ++E V+Y+ + FIN L+ S LN R+ +R+EF
Sbjct: 14 KEVCRERGRFRSLVGALDSSENDNVEYKVATMQFINALVNSPEDLNFRLHLRSEFT 69
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 39.1 bits (92), Expect = 2e-04
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+ EEEEEEEEEEEEEE EEE
Sbjct: 297 QAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 38.7 bits (91), Expect = 3e-04
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+ + EEEEEEEEEEEEEE EE
Sbjct: 294 AQAQAAAAEEEEEEEEEEEEEEPSEE 319
Score = 38.7 bits (91), Expect = 3e-04
Identities = 17/23 (73%), Positives = 18/23 (78%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEE 111
+ EEEEEEEEEEEEEE EEE
Sbjct: 298 AAAAEEEEEEEEEEEEEEPSEEE 320
Score = 35.6 bits (83), Expect = 0.003
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S + + EEEEEEEEEEEEEE E
Sbjct: 293 SAQAQAAAAEEEEEEEEEEEEEEPSE 318
Score = 32.1 bits (74), Expect = 0.043
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEV 115
+ + EEEEEEEEEEEEEE
Sbjct: 290 EVLSAQAQAAAAEEEEEEEEEEEEEEP 316
Score = 26.8 bits (60), Expect = 3.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
+E + + EEEEEEEEEEE
Sbjct: 288 LKEVLSAQAQAAAAEEEEEEEEEEE 312
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 38.1 bits (89), Expect = 2e-04
Identities = 13/26 (50%), Positives = 24/26 (92%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEV 115
++++EE+EEEE++EE+++E+E EEE
Sbjct: 114 SDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 37.3 bits (87), Expect = 4e-04
Identities = 14/25 (56%), Positives = 23/25 (92%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
++EE+EEEE++EE+++E+E EEEE
Sbjct: 116 DDEEDEEEEDDEEDDDEDESEEEES 140
Score = 36.9 bits (86), Expect = 5e-04
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEE 113
+EE+EEEE++EE+++E+E EEEE
Sbjct: 113 ESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 36.5 bits (85), Expect = 9e-04
Identities = 13/28 (46%), Positives = 23/28 (82%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
+++EE+EEEE++EE+++E+E EE S
Sbjct: 114 SDDDEEDEEEEDDEEDDDEDESEEEESP 141
Score = 35.8 bits (83), Expect = 0.002
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 82 HMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
E +++EE+EEEE++EE+++E+E E
Sbjct: 104 QHLVASEEDESDDDEEDEEEEDDEEDDDEDESE 136
Score = 34.6 bits (80), Expect = 0.004
Identities = 13/30 (43%), Positives = 26/30 (86%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEEVF 116
L ++EE+E +++EE+EEEE++EE+++E+
Sbjct: 106 LVASEEDESDDDEEDEEEEDDEEDDDEDES 135
Score = 33.5 bits (77), Expect = 0.010
Identities = 13/29 (44%), Positives = 24/29 (82%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQC 119
EE+E +++EE+EEEE++EE+++E S+
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEE 137
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 36.4 bits (85), Expect = 3e-04
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEVFS 117
EEE++EEEEEEEE+++ F
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDDDMGFG 86
Score = 34.9 bits (81), Expect = 0.002
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 91 EEEEEEEEEEEEEEEEEEEEE 111
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 34.1 bits (79), Expect = 0.003
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 89 STEEEEEEEEEEEEEEEEEEEE 110
+ EEE++EEEEEEEE++
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDD 81
>gnl|CDD|216269 pfam01056, Myc_N, Myc amino-terminal region. The myc family
belongs to the basic helix-loop-helix leucine zipper
class of transcription factors, see pfam00010. Myc forms
a heterodimer with Max, and this complex regulates cell
growth through direct activation of genes involved in
cell replication. Mutations in the C-terminal 20
residues of this domain cause unique changes in the
induction of apoptosis, transformation, and G2 arrest.
Length = 329
Score = 37.2 bits (86), Expect = 8e-04
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEV 115
S+ + E EE+EEEEEEEEEEEE +V
Sbjct: 220 SSSGSDSESEEDEEEEEEEEEEEEIDV 246
Score = 34.9 bits (80), Expect = 0.005
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEE 113
S+ + E EE+EEEEEEEEEEEE
Sbjct: 219 SSSSGSDSESEEDEEEEEEEEEEEE 243
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 36.7 bits (85), Expect = 0.001
Identities = 17/25 (68%), Positives = 17/25 (68%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEEEEEEEEEE E E EE
Sbjct: 401 WAEEEEEEEEEEEEEAAEAEAPMEE 425
Score = 36.7 bits (85), Expect = 0.001
Identities = 18/25 (72%), Positives = 18/25 (72%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
EEEEEEEEEEEEE E E EE V
Sbjct: 403 EEEEEEEEEEEEEAAEAEAPMEEPV 427
Score = 34.8 bits (80), Expect = 0.007
Identities = 16/26 (61%), Positives = 16/26 (61%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVF 116
EEEEEEEEEEE E E EE F
Sbjct: 405 EEEEEEEEEEEAAEAEAPMEEPVPGF 430
Score = 32.9 bits (75), Expect = 0.024
Identities = 16/25 (64%), Positives = 17/25 (68%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
E EEEEEEEEEEEEE E E +
Sbjct: 399 ERWAEEEEEEEEEEEEEAAEAEAPM 423
Score = 30.6 bits (69), Expect = 0.18
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEE 112
EEEEEEEEE E E EE
Sbjct: 406 EEEEEEEEEEAAEAEAPMEEPVP 428
Score = 29.0 bits (65), Expect = 0.68
Identities = 14/25 (56%), Positives = 14/25 (56%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
EEEEEEEE E E EE EV
Sbjct: 408 EEEEEEEEAAEAEAPMEEPVPGFEV 432
Score = 26.3 bits (58), Expect = 4.4
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEE 114
F E+ E EEEEEEEEEEEEE
Sbjct: 389 FLKEKGHPVVERWAEEEEEEEEEEEEE 415
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 36.3 bits (84), Expect = 0.001
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 86 YLFSTEEEEEEEEEEEEEEEEEEEEEEEEV 115
E+ +EE+E++EEEEEEEEEE+E+
Sbjct: 160 LKELEAEDVDEEDEKDEEEEEEEEEEDEDF 189
Score = 35.9 bits (83), Expect = 0.002
Identities = 17/26 (65%), Positives = 23/26 (88%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVF 116
E E+ +EE+E++EEEEEEEEEE+E F
Sbjct: 164 EAEDVDEEDEKDEEEEEEEEEEDEDF 189
Score = 34.7 bits (80), Expect = 0.005
Identities = 14/24 (58%), Positives = 23/24 (95%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE+E++EEEEEEEEEE+E+ ++++
Sbjct: 170 EEDEKDEEEEEEEEEEDEDFDDDD 193
Score = 34.7 bits (80), Expect = 0.006
Identities = 12/25 (48%), Positives = 23/25 (92%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
+E++EEEEEEEEEE+E+ ++++++
Sbjct: 172 DEKDEEEEEEEEEEDEDFDDDDDDD 196
Score = 34.7 bits (80), Expect = 0.006
Identities = 13/24 (54%), Positives = 23/24 (95%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E+E++EEEEEEEEEE+E+ +++++
Sbjct: 171 EDEKDEEEEEEEEEEDEDFDDDDD 194
Score = 34.3 bits (79), Expect = 0.006
Identities = 11/25 (44%), Positives = 23/25 (92%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
++EEEEEEEEEE+E+ ++++++++
Sbjct: 173 EKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 34.3 bits (79), Expect = 0.007
Identities = 14/24 (58%), Positives = 23/24 (95%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+EE+E++EEEEEEEEEE+E+ +++
Sbjct: 169 DEEDEKDEEEEEEEEEEDEDFDDD 192
Score = 33.6 bits (77), Expect = 0.012
Identities = 14/25 (56%), Positives = 22/25 (88%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
+ +EE+E++EEEEEEEEEE+E+ +
Sbjct: 166 EDVDEEDEKDEEEEEEEEEEDEDFD 190
Score = 33.6 bits (77), Expect = 0.013
Identities = 14/25 (56%), Positives = 22/25 (88%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
+EE+E++EEEEEEEEEE+E+ ++
Sbjct: 167 DVDEEDEKDEEEEEEEEEEDEDFDD 191
Score = 29.7 bits (67), Expect = 0.25
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
+ +E E E+ +EE+E++EEEEEEE
Sbjct: 158 KKLKELEAEDVDEEDEKDEEEEEEE 182
Score = 29.7 bits (67), Expect = 0.28
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S E++ +E E E+ +EE+E++EEEE
Sbjct: 154 SMLEKKLKELEAEDVDEEDEKDEEEE 179
Score = 29.3 bits (66), Expect = 0.39
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E++ +E E E+ +EE+E++EEEEE
Sbjct: 157 EKKLKELEAEDVDEEDEKDEEEEE 180
Score = 26.6 bits (59), Expect = 2.9
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
E++ +E E E+ +EE+E++EE
Sbjct: 152 KLSMLEKKLKELEAEDVDEEDEKDEE 177
>gnl|CDD|235302 PRK04456, PRK04456, acetyl-CoA decarbonylase/synthase complex
subunit beta; Reviewed.
Length = 463
Score = 36.2 bits (84), Expect = 0.002
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEVFS 117
EEEEEEEEEEEEEEE E +
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMP 428
Score = 35.0 bits (81), Expect = 0.005
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 93 EEEEEEEEEEEEEEEEEEEEEEVFSQ 118
EEEEEEEEEEEEEEE E +
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMP 428
Score = 34.7 bits (80), Expect = 0.006
Identities = 16/23 (69%), Positives = 16/23 (69%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEE 113
EEEEEEEEEEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 33.5 bits (77), Expect = 0.018
Identities = 16/25 (64%), Positives = 16/25 (64%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
EEEEEEEEEEEEEEE E
Sbjct: 405 EEEEEEEEEEEEEEEPVAEVMMMPA 429
Score = 27.3 bits (61), Expect = 1.9
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEEVFS 117
F E+E E EEEEEEEEEEEE
Sbjct: 390 FLKEKEHPVVERWAAEEEEEEEEEEEEEEE 419
Score = 26.2 bits (58), Expect = 6.2
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 90 TEEEEEEEEEEEEEEEEE 107
EEEEEEEEEEE E
Sbjct: 408 EEEEEEEEEEEEPVAEVM 425
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 36.4 bits (84), Expect = 0.002
Identities = 21/28 (75%), Positives = 24/28 (85%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
EEEEEEEE+E EEEE E+EEEEEEV +
Sbjct: 452 EEEEEEEEQESEEEEGEDEEEEEEVEAD 479
Score = 35.3 bits (81), Expect = 0.004
Identities = 20/25 (80%), Positives = 22/25 (88%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEEEEEEE+E EEEE E+EEEE
Sbjct: 449 EEEEEEEEEEEQESEEEEGEDEEEE 473
Score = 34.5 bits (79), Expect = 0.008
Identities = 20/25 (80%), Positives = 22/25 (88%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEEEEEEEEE+E EEEE E+EE
Sbjct: 447 EEEEEEEEEEEEEQESEEEEGEDEE 471
Score = 34.5 bits (79), Expect = 0.008
Identities = 20/26 (76%), Positives = 22/26 (84%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEEEEEEEE+E EEEE E+EEE
Sbjct: 447 EEEEEEEEEEEEEQESEEEEGEDEEE 472
Score = 34.5 bits (79), Expect = 0.008
Identities = 20/28 (71%), Positives = 22/28 (78%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
EEEEEEEEE+E EEEE E+EEEEE
Sbjct: 451 EEEEEEEEEQESEEEEGEDEEEEEEVEA 478
Score = 33.7 bits (77), Expect = 0.014
Identities = 20/27 (74%), Positives = 22/27 (81%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEV 115
+ EEEEEEEEEEEEEE+E EEEE E
Sbjct: 443 ESVEEEEEEEEEEEEEEQESEEEEGED 469
Score = 33.7 bits (77), Expect = 0.015
Identities = 20/26 (76%), Positives = 21/26 (80%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
E EEEEEEEEEEEEEE+E EEEE
Sbjct: 441 EEESVEEEEEEEEEEEEEEQESEEEE 466
Score = 33.3 bits (76), Expect = 0.023
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+++E EEEE EEEEEEEEEEEEEE+
Sbjct: 433 SMASQESEEEESVEEEEEEEEEEEEEEQ 460
Score = 32.2 bits (73), Expect = 0.053
Identities = 21/26 (80%), Positives = 22/26 (84%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S EEE EEEEEEEEEEEEEE+E EE
Sbjct: 439 SEEEESVEEEEEEEEEEEEEEQESEE 464
Score = 31.8 bits (72), Expect = 0.059
Identities = 21/26 (80%), Positives = 22/26 (84%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S E EEEE EEEEEEEEEEEEEE+E
Sbjct: 436 SQESEEEESVEEEEEEEEEEEEEEQE 461
Score = 31.4 bits (71), Expect = 0.11
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
EEEE E+EEEEEE E + EEE+
Sbjct: 462 SEEEEGEDEEEEEEVEADNGSEEEM 486
Score = 31.0 bits (70), Expect = 0.12
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEE 112
EEEE+E EEEE E+EEEEEE E
Sbjct: 454 EEEEEEQESEEEEGEDEEEEEEVE 477
Score = 31.0 bits (70), Expect = 0.14
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S EEE E+EEEEEE E + EEE E
Sbjct: 462 SEEEEGEDEEEEEEVEADNGSEEEME 487
Score = 31.0 bits (70), Expect = 0.14
Identities = 20/27 (74%), Positives = 22/27 (81%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
+E EEEE EEEEEEEEEEEEEE S+
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESE 463
Score = 29.9 bits (67), Expect = 0.30
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E EEEE E+EEEEEE E + EE
Sbjct: 461 ESEEEEGEDEEEEEEVEADNGSEE 484
Score = 29.9 bits (67), Expect = 0.37
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+E EEEE E+EEEEEE E + E
Sbjct: 460 QESEEEEGEDEEEEEEVEADNGSE 483
Score = 26.8 bits (59), Expect = 3.7
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVFSQCTHLS 123
S E +E EEEE EEEEEEEE + S
Sbjct: 428 SGESPSMASQESEEEESVEEEEEEEEEEEEEEQES 462
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 35.9 bits (83), Expect = 0.003
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFS 117
++EEEE+EEEEEEE+E+E +E
Sbjct: 388 RDDEEEEDEEEEEEEDEDEGPSKEHSD 414
Score = 35.1 bits (81), Expect = 0.004
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVFS 117
+TE ++EEEE+EEEEEEE+E+E + S
Sbjct: 385 NTERDDEEEEDEEEEEEEDEDEGPSKEHS 413
Score = 34.7 bits (80), Expect = 0.006
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E ++EEEE+EEEEEEE+E+E
Sbjct: 384 ANTERDDEEEEDEEEEEEEDEDEG 407
Score = 34.7 bits (80), Expect = 0.007
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E+ E ++EEEE+EEEEEEE+E+
Sbjct: 382 EDANTERDDEEEEDEEEEEEEDED 405
Score = 34.7 bits (80), Expect = 0.007
Identities = 18/34 (52%), Positives = 25/34 (73%), Gaps = 7/34 (20%)
Query: 91 EEEEEEEEEEEEEEE-------EEEEEEEEEVFS 117
EEE+EEEEEEE+E+E ++EE EE++V S
Sbjct: 392 EEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVES 425
Score = 34.3 bits (79), Expect = 0.008
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+ E ++EEEE+EEEEEEE+E+E
Sbjct: 383 DANTERDDEEEEDEEEEEEEDEDE 406
Score = 34.3 bits (79), Expect = 0.009
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEV 115
E+ E ++EEEE+EEEEEEE+E
Sbjct: 382 EDANTERDDEEEEDEEEEEEEDED 405
Score = 34.3 bits (79), Expect = 0.010
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEE 114
FS E E+ E ++EEEE+EEEEEEE
Sbjct: 376 FSALEIEDANTERDDEEEEDEEEEEEE 402
Score = 32.4 bits (74), Expect = 0.042
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E E+ E ++EEEE+EEEEEEE+
Sbjct: 380 EIEDANTERDDEEEEDEEEEEEED 403
Score = 30.1 bits (68), Expect = 0.30
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 85 FYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+ L + E E+ E ++EEEE+EEEEE
Sbjct: 371 YILDAFSALEIEDANTERDDEEEEDEEEEE 400
Score = 28.2 bits (63), Expect = 1.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 86 YLFSTEEEEEEEEEEEEEEEEEEEEEEEEVFSQC 119
Y+ E E+ E ++EEEE+EEEE
Sbjct: 371 YILDAFSALEIEDANTERDDEEEEDEEEEEEEDE 404
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 35.5 bits (82), Expect = 0.003
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEE 114
F +E+E+EEEE+ +E EEEE E+
Sbjct: 367 FEEVDEDEDEEEEQRSDEHEEEEGEDS 393
Score = 35.1 bits (81), Expect = 0.005
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 83 MFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
EE +E+E+EEEE+ +E EEEE E
Sbjct: 360 ARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGE 391
Score = 34.3 bits (79), Expect = 0.009
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
E+E+EEEE+ +E EEEE E+ EE SQ
Sbjct: 372 EDEDEEEEQRSDEHEEEEGEDSEEEGSQ 399
Score = 33.6 bits (77), Expect = 0.014
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+E+E+EEEE+ +E EEEE E+ E
Sbjct: 371 DEDEDEEEEQRSDEHEEEEGEDSE 394
Score = 28.9 bits (65), Expect = 0.64
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE+ +E EEEE E+ EEE +
Sbjct: 378 EEQRSDEHEEEEGEDSEEEGSQSR 401
Score = 28.2 bits (63), Expect = 1.00
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
S E EEEE E+ EEE + E+ E S
Sbjct: 382 SDEHEEEEGEDSEEEGSQSREDGSSESSSD 411
Score = 28.2 bits (63), Expect = 1.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E+ +E EEEE E+ EEE + E
Sbjct: 379 EQRSDEHEEEEGEDSEEEGSQSRE 402
Score = 27.4 bits (61), Expect = 2.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEV 115
+ +E EEEE E+ EEE + E+
Sbjct: 379 EQRSDEHEEEEGEDSEEEGSQSREDG 404
Score = 25.9 bits (57), Expect = 6.7
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEV 115
EE E+ EEE + E+ E +V
Sbjct: 386 EEEEGEDSEEEGSQSREDGSSESSSDV 412
>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2
[Translation, ribosomal structure and biogenesis].
Length = 109
Score = 34.3 bits (79), Expect = 0.003
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVF 116
E E +E EEEE+EEE EEE +
Sbjct: 77 AEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 33.9 bits (78), Expect = 0.004
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E E +E EEEE+EEE EEE
Sbjct: 76 GAEAAAEADEAEEEEKEEEAEEES 99
Score = 33.9 bits (78), Expect = 0.005
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFS 117
E +E EEEE+EEE EEE +++ +F
Sbjct: 80 AAEADEAEEEEKEEEAEEESDDDMLFG 106
Score = 33.5 bits (77), Expect = 0.007
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+ E E +E EEEE+EEE EEE
Sbjct: 73 AAAGAEAAAEADEAEEEEKEEEAEEE 98
Score = 29.3 bits (66), Expect = 0.21
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+ E E +E EEEE+EEE E
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAE 96
Score = 27.4 bits (61), Expect = 1.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+ E E +E EEEE+EEE
Sbjct: 69 AAAAAAAGAEAAAEADEAEEEEKEEE 94
Score = 27.0 bits (60), Expect = 1.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 90 TEEEEEEEEEEEEEEEEE 107
EEEE+EEE EEE +++
Sbjct: 85 EAEEEEKEEEAEEESDDD 102
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is functionally
equivalent to L7/L12 in bacteria and the P1 and P2
proteins in eukaryotes. L12p is homologous to P1 and P2
but is not homologous to bacterial L7/L12. It is located
in the L12 stalk, with proteins L10, L11, and 23S rRNA.
L12p is the only protein in the ribosome to occur as
multimers, always appearing as sets of dimers. Recent
data indicate that most archaeal species contain six
copies of L12p (three homodimers), while eukaryotes have
four copies (two heterodimers), and bacteria may have
four or six copies (two or three homodimers), depending
on the species. The organization of proteins within the
stalk has been characterized primarily in bacteria,
where L7/L12 forms either two or three homodimers and
each homodimer binds to the extended C-terminal helix of
L10. L7/L12 is attached to the ribosome through L10 and
is the only ribosomal protein that does not directly
interact with rRNA. Archaeal L12p is believed to
function in a similar fashion. However, hybrid ribosomes
containing the large subunit from E. coli with an
archaeal stalk are able to bind archaeal and eukaryotic
elongation factors but not bacterial elongation factors.
In several mesophilic and thermophilic archaeal species,
the binding of 23S rRNA to protein L11 and to the
L10/L12p pentameric complex was found to be
temperature-dependent and cooperative.
Length = 106
Score = 34.4 bits (79), Expect = 0.004
Identities = 16/24 (66%), Positives = 22/24 (91%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 74 AEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 34.0 bits (78), Expect = 0.005
Identities = 16/25 (64%), Positives = 23/25 (92%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEE 113
+ EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 33.6 bits (77), Expect = 0.006
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
EE+ EE+EEE+++EEE+EEEEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 32.1 bits (73), Expect = 0.026
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE+ EE+EEE+++EEE+EEEE
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEEE 95
Score = 30.2 bits (68), Expect = 0.100
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE+ EE+EEE+++EEE+EEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEE 94
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 34.4 bits (79), Expect = 0.004
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVFSQCTH 121
T +EEEEEEEE E++++ +E +V H
Sbjct: 90 GTGHTRQEEEEEEEENEKQQQSDEAQVQQHQQH 122
Score = 30.2 bits (68), Expect = 0.13
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
S +EEEEEEEE E++++ +E Q
Sbjct: 89 SGTGHTRQEEEEEEEENEKQQQSDEAQVQQ 118
Score = 27.1 bits (60), Expect = 1.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEE 112
T +EEEEEEEE E++++
Sbjct: 88 TSGTGHTRQEEEEEEEENEKQQQ 110
>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional.
Length = 310
Score = 35.0 bits (81), Expect = 0.004
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 67 GVTGPTCVRIK-PWANHMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEEVFS 117
G T P +IK AN + EEEEEEE++ F
Sbjct: 256 GFTFPLAEKIKEALANPSAAAAAAAAAAAAAAAAAAAPAEEEEEEEDDMGFG 307
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A. The CAF-1
or chromatin assembly factor-1 consists of three
subunits, and this is the first, or A. The A domain is
uniquely required for the progression of S phase in
mouse cells, independent of its ability to promote
histone deposition but dependent on its ability to
interact with HP1 - heterochromatin protein 1-rich
heterochromatin domains next to centromeres that are
crucial for chromosome segregation during mitosis. This
HP1-CAF-1 interaction module functions as a built-in
replication control for heterochromatin, which, like a
control barrier, has an impact on S-phase progression in
addition to DNA-based checkpoints.
Length = 76
Score = 32.6 bits (75), Expect = 0.008
Identities = 13/24 (54%), Positives = 21/24 (87%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEE E+ E E+EE+EEE+++++
Sbjct: 49 EEEEEGEDLESEDEEDEEEDDDDD 72
Score = 31.4 bits (72), Expect = 0.020
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEVF 116
EEEEE E+ E E+EE+EEE++++
Sbjct: 49 EEEEEGEDLESEDEEDEEEDDDDDM 73
Score = 31.0 bits (71), Expect = 0.034
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEEE E+ E E+EE+EEE+++++
Sbjct: 50 EEEEGEDLESEDEEDEEEDDDDDM 73
Score = 30.7 bits (70), Expect = 0.048
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 86 YLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
Y + ++ E EEEEE E+ E E+EE+EEE+
Sbjct: 40 YDYDSDAEWEEEEEGEDLESEDEEDEEED 68
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 34.4 bits (79), Expect = 0.010
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 86 YLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
YL+ +E E+E +EEEEEE+EE++EEEE
Sbjct: 24 YLWVEKEVEKEVPDEEEEEEKEEKKEEEE 52
Score = 32.8 bits (75), Expect = 0.029
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
EE++EEEE+ ++EEE +EEEE+E
Sbjct: 43 EKEEKKEEEEKTTDKEEEVDEEEEKE 68
Score = 32.4 bits (74), Expect = 0.036
Identities = 16/26 (61%), Positives = 23/26 (88%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEV 115
+EEEEEE+EE++EEEE+ ++EEEV
Sbjct: 36 PDEEEEEEKEEKKEEEEKTTDKEEEV 61
Score = 32.4 bits (74), Expect = 0.045
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E++EEEE+ ++EEE +EEEE+EE
Sbjct: 46 EKKEEEEKTTDKEEEVDEEEEKEE 69
Score = 31.7 bits (72), Expect = 0.071
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+EE++EEEE+ ++EEE +EEEE+
Sbjct: 42 EEKEEKKEEEEKTTDKEEEVDEEEEK 67
Score = 31.7 bits (72), Expect = 0.072
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEEE+EE++EEEE+ ++EEE
Sbjct: 36 PDEEEEEEKEEKKEEEEKTTDKEEEV 61
Score = 31.3 bits (71), Expect = 0.10
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
EEEEE+EE++EEEE+ ++EEE +
Sbjct: 39 EEEEEKEEKKEEEEKTTDKEEEVDE 63
Score = 30.9 bits (70), Expect = 0.13
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEE+EE++EEEE+ ++EEE +EE
Sbjct: 41 EEEKEEKKEEEEKTTDKEEEVDEE 64
Score = 27.4 bits (61), Expect = 2.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEV 115
E+EE E E E EE+ E+ + EEV
Sbjct: 503 EEDEEAEVETTEPAEEDAEDSKMEEV 528
Score = 27.4 bits (61), Expect = 2.4
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEV 115
S +E+EE EEE+EE E E E EE+
Sbjct: 494 SIDEDEEVEEEDEEAEVETTEPAEEDA 520
Score = 27.0 bits (60), Expect = 3.0
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFS 117
E+EE EEE+EE E E E EE+ S
Sbjct: 497 EDEEVEEEDEEAEVETTEPAEEDAEDS 523
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II). Bone
sialoprotein (BSP) is a major structural protein of the
bone matrix that is specifically expressed by
fully-differentiated osteoblasts. The expression of bone
sialoprotein (BSP) is normally restricted to mineralised
connective tissues of bones and teeth where it has been
associated with mineral crystal formation. However, it
has been found that ectopic expression of BSP occurs in
various lesions, including oral and extraoral
carcinomas, in which it has been associated with the
formation of microcrystalline deposits and the
metastasis of cancer cells to bone.
Length = 291
Score = 33.9 bits (77), Expect = 0.010
Identities = 18/26 (69%), Positives = 23/26 (88%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+T+E+E +E+EEEEEEEEEEE E EE
Sbjct: 129 ATKEDESDEDEEEEEEEEEEEAEVEE 154
Score = 33.1 bits (75), Expect = 0.019
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
+E +E+EEEEEEEEEEE E EE E
Sbjct: 133 DESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 32.4 bits (73), Expect = 0.041
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
E +E+EEEEEEEEEEE E EE E+
Sbjct: 134 ESDEDEEEEEEEEEEEAEVEENEQG 158
Score = 32.4 bits (73), Expect = 0.043
Identities = 17/24 (70%), Positives = 20/24 (83%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E+E +E+EEEEEEEEEEE E EE
Sbjct: 132 EDESDEDEEEEEEEEEEEAEVEEN 155
Score = 32.0 bits (72), Expect = 0.057
Identities = 16/22 (72%), Positives = 20/22 (90%)
Query: 94 EEEEEEEEEEEEEEEEEEEEEV 115
+E+E +E+EEEEEEEEEEE EV
Sbjct: 131 KEDESDEDEEEEEEEEEEEAEV 152
Score = 31.6 bits (71), Expect = 0.066
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEE 112
++E+EEEEEEEEEEE E EE E+
Sbjct: 134 ESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 31.2 bits (70), Expect = 0.099
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEV 115
+E+EEEEEEEEEEE E EE E+
Sbjct: 136 DEDEEEEEEEEEEEAEVEENEQGT 159
Score = 28.5 bits (63), Expect = 0.77
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+ ++ +E+E +E+EEEEEEEEEEE
Sbjct: 124 NAGKKATKEDESDEDEEEEEEEEEEE 149
Score = 25.8 bits (56), Expect = 6.6
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVFSQCTHLS 123
S EE EEE EEE E+ + E+EE ++ T LS
Sbjct: 60 SEEEGEEETSNEEENNEDSDGNEDEEAEAENTTLS 94
Score = 25.8 bits (56), Expect = 7.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S+EEE EEE EEE E+ + E+E
Sbjct: 59 SSEEEGEEETSNEEENNEDSDGNEDE 84
>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890). This
family is conserved in dsDNA adenoviruses of
vertebrates. The function is not known.
Length = 172
Score = 33.4 bits (76), Expect = 0.013
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 85 FYLFSTEEEEEEEEEEEEEEEEEEEEEEEEV 115
+ EEE E+ E+ +EE+EE EE EEE
Sbjct: 29 EEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59
Score = 31.4 bits (71), Expect = 0.074
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEVF 116
EE+EEE E+ E+ +EE+EE EEV
Sbjct: 32 EEDEEEMEDWEDSLDEEDEEAEEVE 56
Score = 31.0 bits (70), Expect = 0.086
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
EE E+ E+ +EE+EE EE EEE S
Sbjct: 36 EEMEDWEDSLDEEDEEAEEVEEETAASS 63
Score = 26.8 bits (59), Expect = 2.5
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
+EEE+ + + EE EE+EEE E+ E
Sbjct: 18 KDEEEDWDSQAEEVEEDEEEMEDWE 42
Score = 26.4 bits (58), Expect = 3.3
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEVFS 117
T++EEE+ + + EE EE+EEE E+ S
Sbjct: 17 TKDEEEDWDSQAEEVEEDEEEMEDWEDS 44
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 33.8 bits (78), Expect = 0.015
Identities = 16/26 (61%), Positives = 24/26 (92%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S EEE+EE+E+ ++E++EEEEEEE+E
Sbjct: 352 SDEEEDEEDEDSDDEDDEEEEEEEKE 377
Score = 33.0 bits (76), Expect = 0.024
Identities = 14/27 (51%), Positives = 24/27 (88%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEV 115
++EEE+EE+E+ ++E++EEEEEEE+
Sbjct: 351 LSDEEEDEEDEDSDDEDDEEEEEEEKE 377
Score = 32.7 bits (75), Expect = 0.039
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
+EEE+EE+E+ ++E++EEEEEE +
Sbjct: 351 LSDEEEDEEDEDSDDEDDEEEEEEEKEK 378
Score = 32.3 bits (74), Expect = 0.042
Identities = 12/25 (48%), Positives = 21/25 (84%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
+ +EEE+EE+E+ ++E++EEEEE
Sbjct: 350 DLSDEEEDEEDEDSDDEDDEEEEEE 374
Score = 32.3 bits (74), Expect = 0.049
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+ +EEE+EE+E+ ++E++EEEE
Sbjct: 347 EDVDLSDEEEDEEDEDSDDEDDEEEE 372
Score = 31.9 bits (73), Expect = 0.070
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEV 115
EE+ + +EEE+EE+E+ ++E++E
Sbjct: 344 EEEEDVDLSDEEEDEEDEDSDDEDDEE 370
Score = 31.5 bits (72), Expect = 0.098
Identities = 12/27 (44%), Positives = 22/27 (81%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEV 115
EEE+ ++E+EE+++++ EEEEE+V
Sbjct: 323 EEEEEDGVDDEDEEDDDDDLEEEEEDV 349
Score = 31.1 bits (71), Expect = 0.11
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 85 FYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
F L EE+EEEEE+ ++E+EE+++++ E
Sbjct: 314 FGLGQGEEDEEEEEDGVDDEDEEDDDDDLE 343
Score = 30.7 bits (70), Expect = 0.16
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEE 113
E+EE+E+ ++E++EEEEEEE+E+
Sbjct: 352 SDEEEDEEDEDSDDEDDEEEEEEEKEK 378
Score = 30.7 bits (70), Expect = 0.17
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEE+ + +EEE+EE+E+ ++E
Sbjct: 343 EEEEEDVDLSDEEEDEEDEDSDDE 366
Score = 30.4 bits (69), Expect = 0.21
Identities = 11/26 (42%), Positives = 21/26 (80%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
E+EEEEE+ ++E+EE+++++ EE
Sbjct: 319 GEEDEEEEEDGVDDEDEEDDDDDLEE 344
Score = 30.0 bits (68), Expect = 0.26
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 86 YLFSTEEEEEEEEEEEEEEEEEEEEEEEEV 115
+ EE+EEEEE+ ++E+EE+++++
Sbjct: 314 FGLGQGEEDEEEEEDGVDDEDEEDDDDDLE 343
Score = 30.0 bits (68), Expect = 0.30
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+++ EEEEE+ + +EEE+EE+E+
Sbjct: 336 EDDDDDLEEEEEDVDLSDEEEDEEDED 362
Score = 30.0 bits (68), Expect = 0.32
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
EE+++++ EEEEE+ + +EEE+E
Sbjct: 335 EEDDDDDLEEEEEDVDLSDEEEDEE 359
Score = 29.6 bits (67), Expect = 0.37
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEE 114
E+EE+++++ EEEEE+ + +EEE
Sbjct: 330 VDDEDEEDDDDDLEEEEEDVDLSDEEE 356
Score = 29.6 bits (67), Expect = 0.40
Identities = 11/24 (45%), Positives = 21/24 (87%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+EEEEE+ ++E+EE+++++ EEE
Sbjct: 322 DEEEEEDGVDDEDEEDDDDDLEEE 345
Score = 29.6 bits (67), Expect = 0.44
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
++ EEEEE+ + +EEE+EE+E+
Sbjct: 340 DDLEEEEEDVDLSDEEEDEEDEDS 363
Score = 29.2 bits (66), Expect = 0.50
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEE+ + +EEE+EE+E+ ++
Sbjct: 342 LEEEEEDVDLSDEEEDEEDEDSDD 365
Score = 29.2 bits (66), Expect = 0.52
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVFS 117
+++++ EEEEE+ + +EEE+EE+ S
Sbjct: 335 EEDDDDDLEEEEEDVDLSDEEEDEEDEDS 363
Score = 28.8 bits (65), Expect = 0.65
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+ EEEEE+ + +EEE+EE+E+ +
Sbjct: 341 DLEEEEEDVDLSDEEEDEEDEDSD 364
Score = 28.8 bits (65), Expect = 0.79
Identities = 9/24 (37%), Positives = 20/24 (83%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E+ ++E+EE+++++ EEEEE+ +
Sbjct: 327 EDGVDDEDEEDDDDDLEEEEEDVD 350
Score = 28.0 bits (63), Expect = 1.1
Identities = 10/24 (41%), Positives = 20/24 (83%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+EE+++++ EEEEE+ + +EEE+
Sbjct: 334 DEEDDDDDLEEEEEDVDLSDEEED 357
Score = 27.7 bits (62), Expect = 2.0
Identities = 8/24 (33%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+ ++E+EE+++++ EEEEE+ +
Sbjct: 328 DGVDDEDEEDDDDDLEEEEEDVDL 351
Score = 27.3 bits (61), Expect = 2.1
Identities = 8/24 (33%), Positives = 18/24 (75%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
++E+EE+++++ EEEEE+ +
Sbjct: 329 GVDDEDEEDDDDDLEEEEEDVDLS 352
Score = 26.5 bits (59), Expect = 4.5
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 12/40 (30%)
Query: 90 TEEEEEEEEEE-----EEE-------EEEEEEEEEEEVFS 117
TEEE +EE E E E EEE++EEEE+ S
Sbjct: 259 TEEELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKES 298
>gnl|CDD|117592 pfam09026, Cenp-B_dimeris, Centromere protein B dimerisation
domain. The centromere protein B (CENP-B) dimerisation
domain is composed of two alpha-helices, which are
folded into an antiparallel configuration. Dimerisation
of CENP-B is mediated by this domain, in which monomers
dimerise to form a symmetrical, antiparallel, four-helix
bundle structure with a large hydrophobic patch in which
23 residues of one monomer form van der Waals contacts
with the other monomer. This CENP-B dimer configuration
may be suitable for capturing two distant CENP-B boxes
during centromeric heterochromatin formation.
Length = 101
Score = 32.4 bits (73), Expect = 0.016
Identities = 10/26 (38%), Positives = 26/26 (100%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEV 115
++EEE++++E+EE+++E+++E+++EV
Sbjct: 16 SDEEEDDDDEDEEDDDEDDDEDDDEV 41
Score = 30.5 bits (68), Expect = 0.081
Identities = 10/25 (40%), Positives = 24/25 (96%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEE 113
S EEE++++E+EE+++E+++E+++E
Sbjct: 16 SDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 30.1 bits (67), Expect = 0.13
Identities = 9/26 (34%), Positives = 24/26 (92%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S +EEE++++E+EE+++E+++E+++
Sbjct: 14 SDSDEEEDDDDEDEEDDDEDDDEDDD 39
Score = 30.1 bits (67), Expect = 0.14
Identities = 9/26 (34%), Positives = 23/26 (88%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S + +EEE++++E+EE+++E+++E+
Sbjct: 12 SDSDSDEEEDDDDEDEEDDDEDDDED 37
Score = 28.2 bits (62), Expect = 0.53
Identities = 9/29 (31%), Positives = 23/29 (79%)
Query: 86 YLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+L E+ + + +EEE++++E+EE+++E+
Sbjct: 5 FLEGEEDSDSDSDEEEDDDDEDEEDDDED 33
Score = 28.2 bits (62), Expect = 0.59
Identities = 10/27 (37%), Positives = 24/27 (88%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFS 117
EE++++E+EE+++E+++E+++E V S
Sbjct: 19 EEDDDDEDEEDDDEDDDEDDDEVPVPS 45
Score = 27.8 bits (61), Expect = 0.83
Identities = 9/30 (30%), Positives = 22/30 (73%)
Query: 85 FYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+ EE+ + + +EEE++++E+EE+++E
Sbjct: 3 LHFLEGEEDSDSDSDEEEDDDDEDEEDDDE 32
Score = 26.7 bits (58), Expect = 2.3
Identities = 7/24 (29%), Positives = 21/24 (87%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+ + + +EEE++++E+EE+++E++
Sbjct: 11 DSDSDSDEEEDDDDEDEEDDDEDD 34
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 32.8 bits (75), Expect = 0.017
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 83 MFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+F L S+++EEEE EEE +E E+E+ E +
Sbjct: 87 IFRELSSSDDEEEETEEESTDETEQEDPPETK 118
Score = 30.1 bits (68), Expect = 0.15
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
EEEE EEE +E E+E+ E + E
Sbjct: 95 DDEEEETEEESTDETEQEDPPETKTE 120
Score = 29.7 bits (67), Expect = 0.22
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S +EEEE EEE +E E+E+ E +
Sbjct: 94 SDDEEEETEEESTDETEQEDPPETKT 119
Score = 29.3 bits (66), Expect = 0.31
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
+ ++EEEE EEE +E E+E+ E ++
Sbjct: 92 SSSDDEEEETEEESTDETEQEDPPETKTE 120
Score = 29.0 bits (65), Expect = 0.39
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
TEEE +E E+E+ E + E +E++
Sbjct: 100 ETEEESTDETEQEDPPETKTESKEKK 125
Score = 29.0 bits (65), Expect = 0.40
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+ EE +E E+E+ E + E +E+++
Sbjct: 101 TEEESTDETEQEDPPETKTESKEKKK 126
Score = 28.6 bits (64), Expect = 0.66
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
E EEE +E E+E+ E + E +E
Sbjct: 98 EEETEEESTDETEQEDPPETKTESKE 123
Score = 28.2 bits (63), Expect = 0.71
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
EEE EEE +E E+E+ E + E
Sbjct: 96 DEEEETEEESTDETEQEDPPETKTES 121
Score = 27.8 bits (62), Expect = 1.1
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEE 112
ST+E E+E+ E + E +E+++ E
Sbjct: 105 STDETEQEDPPETKTESKEKKKRE 128
Score = 27.4 bits (61), Expect = 1.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
EEE +E E+E+ E + E +E+
Sbjct: 99 EETEEESTDETEQEDPPETKTESKEK 124
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional.
Length = 258
Score = 33.2 bits (77), Expect = 0.020
Identities = 20/24 (83%), Positives = 20/24 (83%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEE EEEEEEEEEEE EE E E
Sbjct: 235 EEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 32.8 bits (76), Expect = 0.023
Identities = 20/24 (83%), Positives = 20/24 (83%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEEE EEEEEEEEEEE EE E
Sbjct: 234 EEEEEEAEEEEEEEEEEEAEEAEA 257
Score = 32.4 bits (75), Expect = 0.035
Identities = 20/24 (83%), Positives = 20/24 (83%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEEE EEEEEEEEEEE EE E
Sbjct: 233 AEEEEEEAEEEEEEEEEEEAEEAE 256
Score = 32.1 bits (74), Expect = 0.046
Identities = 20/24 (83%), Positives = 20/24 (83%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E EEEEEE EEEEEEEEEEE EE
Sbjct: 231 EAAEEEEEEAEEEEEEEEEEEAEE 254
Score = 32.1 bits (74), Expect = 0.050
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
E EEEEEE EEEEEEEEEEE E
Sbjct: 229 LAEAAEEEEEEAEEEEEEEEEEEAE 253
Score = 31.7 bits (73), Expect = 0.054
Identities = 19/24 (79%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEEE EEEEEEEEEEE EE
Sbjct: 232 AAEEEEEEAEEEEEEEEEEEAEEA 255
Score = 31.3 bits (72), Expect = 0.087
Identities = 18/25 (72%), Positives = 18/25 (72%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
E EEEEEE EEEEEEEEEEE
Sbjct: 229 LAEAAEEEEEEAEEEEEEEEEEEAE 253
Score = 30.9 bits (71), Expect = 0.13
Identities = 18/24 (75%), Positives = 18/24 (75%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E EEEEEE EEEEEEEEEEE
Sbjct: 228 RLAEAAEEEEEEAEEEEEEEEEEE 251
Score = 30.5 bits (70), Expect = 0.17
Identities = 17/24 (70%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E EEEEEE EEEEEEEEEE
Sbjct: 227 GRLAEAAEEEEEEAEEEEEEEEEE 250
Score = 29.7 bits (68), Expect = 0.30
Identities = 16/24 (66%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+ E EEEEEE EEEEEEEEE
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEE 249
Score = 28.6 bits (65), Expect = 0.77
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEV 115
+ E EEEEEE EEEEEEEE
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEE 249
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 32.7 bits (75), Expect = 0.030
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 82 HMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+ L EEEEEE++ E E+E+EE+E+EEE
Sbjct: 278 DLEELLEKAEEEEEEDDYSESEDEDEEDEDEEE 310
Score = 31.9 bits (73), Expect = 0.049
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
EEEEE++ E E+E+EE+E+EEEE
Sbjct: 288 EEEEEDDYSESEDEDEEDEDEEEEE 312
Score = 31.9 bits (73), Expect = 0.051
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
EEEE++ E E+E+EE+E+EEEEE
Sbjct: 287 EEEEEEDDYSESEDEDEEDEDEEEEE 312
Score = 31.9 bits (73), Expect = 0.060
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
EEE++ E E+E+EE+E+EEEEE+
Sbjct: 288 EEEEEDDYSESEDEDEEDEDEEEEED 313
Score = 31.2 bits (71), Expect = 0.096
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
E+ EEEEEE++ E E+E+EE+E+
Sbjct: 284 EKAEEEEEEDDYSESEDEDEEDEDE 308
Score = 31.2 bits (71), Expect = 0.099
Identities = 12/26 (46%), Positives = 21/26 (80%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
E++ E E+E+EE+E+EEEEE+++
Sbjct: 290 EEEDDYSESEDEDEEDEDEEEEEDDD 315
Score = 31.2 bits (71), Expect = 0.099
Identities = 12/26 (46%), Positives = 21/26 (80%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
E E+E+EE+E+EEEEE+++E ++
Sbjct: 294 DYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 30.8 bits (70), Expect = 0.15
Identities = 12/24 (50%), Positives = 21/24 (87%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
++ E E+E+EE+E+EEEEE+++E
Sbjct: 293 DDYSESEDEDEEDEDEEEEEDDDE 316
Score = 30.8 bits (70), Expect = 0.15
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
E E+E+EE+E+EEEEE+++E +
Sbjct: 293 DDYSESEDEDEEDEDEEEEEDDDEGD 318
Score = 30.8 bits (70), Expect = 0.15
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
+ EEEEEE++ E E+E+EE+E+E
Sbjct: 285 KAEEEEEEDDYSESEDEDEEDEDEE 309
Score = 30.4 bits (69), Expect = 0.20
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEVFS 117
E+ EEEEEE++ E E+E+EE+E
Sbjct: 284 EKAEEEEEEDDYSESEDEDEEDEDEE 309
Score = 27.7 bits (62), Expect = 1.4
Identities = 12/25 (48%), Positives = 21/25 (84%)
Query: 86 YLFSTEEEEEEEEEEEEEEEEEEEE 110
Y S +E+EE+E+EEEEE+++E ++
Sbjct: 295 YSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 26.2 bits (58), Expect = 6.0
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE+ EE E+ EEEEEE++ E E
Sbjct: 276 EEDLEELLEKAEEEEEEDDYSESE 299
Score = 25.8 bits (57), Expect = 8.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
+EE+ EE E+ EEEEEE++ E
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSES 298
Score = 25.4 bits (56), Expect = 8.8
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E+ EE E+ EEEEEE++ E E+
Sbjct: 277 EDLEELLEKAEEEEEEDDYSESED 300
>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein.
Length = 306
Score = 32.1 bits (73), Expect = 0.045
Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S + EEEE EE EE+EEEE EEE EE
Sbjct: 76 SEDGEEEEVEEGEEDEEEEGEEESEE 101
Score = 31.3 bits (71), Expect = 0.075
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEV 115
EEE EE EE+EEEE EEE EE E +
Sbjct: 79 GEEEEVEEGEEDEEEEGEEESEEFEPL 105
Score = 31.0 bits (70), Expect = 0.13
Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVF 116
E+ EEEE EE EE+EEEE EEE E F
Sbjct: 77 EDGEEEEVEEGEEDEEEEGEEESEEF 102
Score = 29.4 bits (66), Expect = 0.44
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
E+ EEEE EE EE+EEEE EEE
Sbjct: 76 SEDGEEEEVEEGEEDEEEEGEEESE 100
Score = 27.1 bits (60), Expect = 2.3
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E+ EEEE EE EE+EEEE EE
Sbjct: 74 RISEDGEEEEVEEGEEDEEEEGEE 97
Score = 26.0 bits (57), Expect = 5.6
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEV 115
E E+ EEEE EE EE+EEEE
Sbjct: 71 IEVRISEDGEEEEVEEGEEDEEEEGE 96
Score = 25.6 bits (56), Expect = 7.4
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
E E+ EEEE EE EE+EEEE
Sbjct: 69 GRIEVRISEDGEEEEVEEGEEDEEEE 94
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 32.1 bits (74), Expect = 0.056
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 84 FFYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
F EE+ E EE +++E+EE
Sbjct: 169 LIDGFVDPNAEEDPAHVGSELEELDDDEDEE 199
Score = 31.3 bits (72), Expect = 0.085
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE+ E EE +++E+EEEEE
Sbjct: 179 EEDPAHVGSELEELDDDEDEEEEE 202
Score = 29.4 bits (67), Expect = 0.46
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFS 117
E EE +++E+EEEEE+E +
Sbjct: 183 AHVGSELEELDDDEDEEEEEDENDDSL 209
Score = 28.2 bits (64), Expect = 1.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+ E EE +++E+EEEEE+E ++
Sbjct: 182 PAHVGSELEELDDDEDEEEEEDENDDS 208
Score = 27.8 bits (63), Expect = 1.7
Identities = 5/32 (15%), Positives = 14/32 (43%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
+ + ++ E E + + +E+ EE +
Sbjct: 59 VVEEAPDADDLLLAENEADAQTDEDAEEEAAA 90
Score = 27.1 bits (61), Expect = 2.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
E EE +++E+EEEEE+E ++
Sbjct: 186 GSELEELDDDEDEEEEEDENDDSLA 210
Score = 25.9 bits (58), Expect = 7.8
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+++E+EEEEE+E ++ +E E
Sbjct: 192 LDDDEDEEEEEDENDDSLAADESE 215
Score = 25.5 bits (57), Expect = 9.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E +++E+EEEEE+E ++ +E
Sbjct: 191 ELDDDEDEEEEEDENDDSLAADES 214
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 31.9 bits (73), Expect = 0.059
Identities = 6/30 (20%), Positives = 20/30 (66%)
Query: 85 FYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+ E++++ E ++ E+E++E++E++
Sbjct: 1358 KKKSDSSSEDDDDSEVDDSEDEDDEDDEDD 1387
Score = 29.6 bits (67), Expect = 0.40
Identities = 7/28 (25%), Positives = 22/28 (78%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
S+ E++++ E ++ E+E++E++E+++
Sbjct: 1361 SDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 28.1 bits (63), Expect = 1.2
Identities = 5/29 (17%), Positives = 17/29 (58%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVFS 117
+ + E++++ E ++ E+E++E+
Sbjct: 1358 KKKSDSSSEDDDDSEVDDSEDEDDEDDED 1386
Score = 26.9 bits (60), Expect = 3.3
Identities = 5/26 (19%), Positives = 17/26 (65%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
++ + E++++ E ++ E+E++E
Sbjct: 1357 RKKKSDSSSEDDDDSEVDDSEDEDDE 1382
>gnl|CDD|217257 pfam02867, Ribonuc_red_lgC, Ribonucleotide reductase, barrel
domain.
Length = 516
Score = 31.7 bits (73), Expect = 0.061
Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 22/83 (26%)
Query: 41 ILAFINCLIISTPQLNDRIRIRNEFIGVTGPTCVRIKPWANHMFF---------YLFSTE 91
I F++ ++ R RN +GV W +F LFS
Sbjct: 93 IEEFLDL---KKNNGDEERRARNLNLGV----------WVPDLFMKRVENDEDWTLFSPR 139
Query: 92 EEEEEEEEEEEEEEEEEEEEEEE 114
E E+ EE EEE E+ E
Sbjct: 140 EAPGLEDLYGEEFEEEYEKLEAN 162
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region. The domain
is found in the primary vegetative sigma factor. The
function of this domain is unclear and can be removed
without loss of function.
Length = 211
Score = 31.4 bits (72), Expect = 0.062
Identities = 10/24 (41%), Positives = 22/24 (91%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E +EE+ E++++++E+E+E++EEE
Sbjct: 47 ELDEEDLEDDDDDDEDEDEDDEEE 70
Score = 31.4 bits (72), Expect = 0.065
Identities = 8/25 (32%), Positives = 19/25 (76%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
E E +EE+ E++++++E+E+E+
Sbjct: 42 AAIESELDEEDLEDDDDDDEDEDED 66
Score = 31.4 bits (72), Expect = 0.066
Identities = 10/26 (38%), Positives = 22/26 (84%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S +EE+ E++++++E+E+E++EEE
Sbjct: 46 SELDEEDLEDDDDDDEDEDEDDEEEA 71
Score = 31.0 bits (71), Expect = 0.096
Identities = 9/25 (36%), Positives = 21/25 (84%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
E E +EE+ E++++++E+E+E++E
Sbjct: 44 IESELDEEDLEDDDDDDEDEDEDDE 68
Score = 31.0 bits (71), Expect = 0.096
Identities = 9/24 (37%), Positives = 22/24 (91%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+EE+ E++++++E+E+E++EEE +
Sbjct: 49 DEEDLEDDDDDDEDEDEDDEEEAD 72
Score = 30.6 bits (70), Expect = 0.12
Identities = 9/25 (36%), Positives = 21/25 (84%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
E +EE+ E++++++E+E+E++EE
Sbjct: 45 ESELDEEDLEDDDDDDEDEDEDDEE 69
Score = 30.6 bits (70), Expect = 0.12
Identities = 9/25 (36%), Positives = 21/25 (84%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEE 113
EE+ E++++++E+E+E++EEE +
Sbjct: 48 LDEEDLEDDDDDDEDEDEDDEEEAD 72
Score = 29.8 bits (68), Expect = 0.27
Identities = 8/26 (30%), Positives = 20/26 (76%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
E+ E++++++E+E+E++EEE +
Sbjct: 49 DEEDLEDDDDDDEDEDEDDEEEADLG 74
Score = 29.8 bits (68), Expect = 0.27
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
T E E +EE+ E++++++E+E+
Sbjct: 40 TAAAIESELDEEDLEDDDDDDEDED 64
Score = 29.8 bits (68), Expect = 0.28
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
E E +EE+ E++++++E+E+E
Sbjct: 41 AAAIESELDEEDLEDDDDDDEDEDE 65
Score = 28.7 bits (65), Expect = 0.62
Identities = 7/25 (28%), Positives = 19/25 (76%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
+ E++++++E+E+E++EEE +
Sbjct: 51 EDLEDDDDDDEDEDEDDEEEADLGP 75
Score = 28.3 bits (64), Expect = 0.77
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEV 115
+++++E+E+E++EEE + + EE
Sbjct: 54 EDDDDDDEDEDEDDEEEADLGPDPEEA 80
Score = 28.3 bits (64), Expect = 0.92
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
E E +EE+ E++++++E+
Sbjct: 38 AATAAAIESELDEEDLEDDDDDDED 62
Score = 27.5 bits (62), Expect = 1.7
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
E E +EE+ E++++++E
Sbjct: 37 AAATAAAIESELDEEDLEDDDDDDE 61
Score = 26.4 bits (59), Expect = 3.9
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+ E E +EE+ E+++++
Sbjct: 34 AAAAAATAAAIESELDEEDLEDDDDD 59
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 31.6 bits (72), Expect = 0.064
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
E EE+E EEEE+ EEE+ EEE+ +
Sbjct: 157 ERAEEKEREEEEKAAEEEKAREEEILTG 184
Score = 29.7 bits (67), Expect = 0.32
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+E EE+E EEEE+ EEE+ EE
Sbjct: 156 KERAEEKEREEEEKAAEEEKAREE 179
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 31.7 bits (72), Expect = 0.067
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
L +EE++EE+ EE + EE +EE EEE
Sbjct: 279 LKEKKEEKDEEKSEEVKTEEVDEEFEEE 306
Score = 31.7 bits (72), Expect = 0.077
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE++EE+ EE + EE +EE EEEE
Sbjct: 284 EEKDEEKSEEVKTEEVDEEFEEEE 307
Score = 31.4 bits (71), Expect = 0.10
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVF 116
E++EE+ EE + EE +EE EEEE+ F
Sbjct: 285 EKDEEKSEEVKTEEVDEEFEEEEKGF 310
Score = 31.0 bits (70), Expect = 0.16
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEEV 115
++EE++EE+ EE + EE +EE EE
Sbjct: 279 LKEKKEEKDEEKSEEVKTEEVDEEFEEE 306
Score = 30.2 bits (68), Expect = 0.25
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVF 116
++EE+ EE + EE +EE EEEE+ +
Sbjct: 286 KDEEKSEEVKTEEVDEEFEEEEKGFY 311
Score = 26.7 bits (59), Expect = 4.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 89 STEEEEEEEEEEEEEEEEEEEE 110
EE + EE +EE EEEE+
Sbjct: 289 EKSEEVKTEEVDEEFEEEEKGF 310
Score = 26.3 bits (58), Expect = 4.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEVF 116
EE + EE +EE EEEE+ E++
Sbjct: 291 SEEVKTEEVDEEFEEEEKGFYYELY 315
Score = 26.3 bits (58), Expect = 4.6
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 94 EEEEEEEEEEEEEEEEEEEEEVFSQ 118
E++EE++EE+ EE + EE +E F +
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEE 305
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plant species have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site located in the C-terminal
region of P2. TCS inactivates the ribosome by
depurinating a specific adenine in the sarcin-ricin loop
of 28S rRNA.
Length = 103
Score = 30.8 bits (70), Expect = 0.068
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEE 113
+ E ++EE++EEEEEE +++
Sbjct: 73 AAAAAAAEAKKEEKKEEEEEESDDD 97
Score = 30.0 bits (68), Expect = 0.14
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 95 EEEEEEEEEEEEEEEEEEEE 114
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 31.9 bits (73), Expect = 0.069
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 86 YLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
Y E+++++EE +EE+EE + E++E+
Sbjct: 120 YRDLEEDDDDDEESDEEDEESSKSEDDED 148
Score = 30.0 bits (68), Expect = 0.32
Identities = 8/29 (27%), Positives = 20/29 (68%)
Query: 85 FYLFSTEEEEEEEEEEEEEEEEEEEEEEE 113
+ +++++EE +EE+EE + E++E+
Sbjct: 120 YRDLEEDDDDDEESDEEDEESSKSEDDED 148
Score = 29.2 bits (66), Expect = 0.54
Identities = 9/31 (29%), Positives = 22/31 (70%)
Query: 84 FFYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+ L ++++EE +EE+EE + E++E+++
Sbjct: 120 YRDLEEDDDDDEESDEEDEESSKSEDDEDDD 150
Score = 28.0 bits (63), Expect = 1.2
Identities = 8/24 (33%), Positives = 20/24 (83%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+++EE +EE+EE + E++E++++
Sbjct: 128 DDDEESDEEDEESSKSEDDEDDDD 151
Score = 27.3 bits (61), Expect = 2.1
Identities = 6/26 (23%), Positives = 20/26 (76%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+EE+EE + E++E+++++++++
Sbjct: 131 EESDEEDEESSKSEDDEDDDDDDDDD 156
Score = 27.3 bits (61), Expect = 2.3
Identities = 8/26 (30%), Positives = 20/26 (76%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
EE +EE+EE + E++E+++++++
Sbjct: 129 DDEESDEEDEESSKSEDDEDDDDDDD 154
Score = 26.5 bits (59), Expect = 4.6
Identities = 6/25 (24%), Positives = 22/25 (88%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
+EE+EE + E++E+++++++++++
Sbjct: 134 DEEDEESSKSEDDEDDDDDDDDDDI 158
Score = 26.1 bits (58), Expect = 5.2
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 85 FYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+ + EE+++++EE +EE+EE +
Sbjct: 113 EPRYDDAYRDLEEDDDDDEESDEEDEESSK 142
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 31.4 bits (72), Expect = 0.076
Identities = 19/26 (73%), Positives = 23/26 (88%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEEEE+E++EEE+EEEEEE EE
Sbjct: 439 KKEEEEEEEKEKKEEEKEEEEEEAEE 464
Score = 31.0 bits (71), Expect = 0.11
Identities = 19/24 (79%), Positives = 23/24 (95%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEEE+E++EEE+EEEEEE EEE
Sbjct: 442 EEEEEEKEKKEEEKEEEEEEAEEE 465
Score = 31.0 bits (71), Expect = 0.12
Identities = 18/26 (69%), Positives = 23/26 (88%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
EEEE+E++EEE+EEEEEE EEE+E
Sbjct: 442 EEEEEEKEKKEEEKEEEEEEAEEEKE 467
Score = 31.0 bits (71), Expect = 0.12
Identities = 18/28 (64%), Positives = 26/28 (92%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEEV 115
F+ +++EEEEEEE+E++EEE+EEEEEE
Sbjct: 435 FAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Score = 30.7 bits (70), Expect = 0.14
Identities = 18/25 (72%), Positives = 23/25 (92%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
E+E++EEE+EEEEEE EEE+EEEE
Sbjct: 446 EEKEKKEEEKEEEEEEAEEEKEEEE 470
Score = 30.7 bits (70), Expect = 0.17
Identities = 18/25 (72%), Positives = 23/25 (92%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
EEE+E++EEE+EEEEEE EEE+EE
Sbjct: 444 EEEEKEKKEEEKEEEEEEAEEEKEE 468
Score = 30.3 bits (69), Expect = 0.20
Identities = 18/26 (69%), Positives = 23/26 (88%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+E++EEE+EEEEEE EEE+EEEEE
Sbjct: 446 EEKEKKEEEKEEEEEEAEEEKEEEEE 471
Score = 30.3 bits (69), Expect = 0.20
Identities = 18/26 (69%), Positives = 23/26 (88%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
EE+E++EEE+EEEEEE EEE+EEE
Sbjct: 444 EEEEKEKKEEEKEEEEEEAEEEKEEE 469
Score = 30.3 bits (69), Expect = 0.21
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
+++EEEEEEE+E++EEE+EEE
Sbjct: 433 KAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Score = 30.3 bits (69), Expect = 0.21
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVFSQCT 120
E++EEE+EEEEEE EEE+EEEEE+ Q T
Sbjct: 447 EKEKKEEEKEEEEEEAEEEKEEEEEKKKKQAT 478
Score = 29.1 bits (66), Expect = 0.55
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
EEE++E++++ +++EEEEEEE
Sbjct: 424 EEEKKEKKKKAFAGKKKEEEEEEEK 448
Score = 29.1 bits (66), Expect = 0.58
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEV 115
+++ +++EEEEEEE+E++EEE
Sbjct: 430 KKKKAFAGKKKEEEEEEEKEKKEEEK 455
Score = 29.1 bits (66), Expect = 0.61
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+ +++EEEEEEE+E++EEE+E
Sbjct: 431 KKKAFAGKKKEEEEEEEKEKKEEEKE 456
Score = 28.3 bits (64), Expect = 0.87
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
++++ +++EEEEEEE+E++EE +
Sbjct: 428 KEKKKKAFAGKKKEEEEEEEKEKKEEEKEE 457
Score = 28.3 bits (64), Expect = 1.1
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
EEE++E++++ +++EEEEEE
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEEEE 446
Score = 28.0 bits (63), Expect = 1.2
Identities = 10/25 (40%), Positives = 20/25 (80%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
E++E++++ +++EEEEEEE+E
Sbjct: 425 EEKKEKKKKAFAGKKKEEEEEEEKE 449
Score = 27.6 bits (62), Expect = 1.7
Identities = 8/24 (33%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E++ EEE++E++++ +++EEE
Sbjct: 420 EKKREEEKKEKKKKAFAGKKKEEE 443
Score = 27.6 bits (62), Expect = 1.7
Identities = 9/25 (36%), Positives = 20/25 (80%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
+E++++ +++EEEEEEE+E++
Sbjct: 427 KKEKKKKAFAGKKKEEEEEEEKEKK 451
Score = 27.6 bits (62), Expect = 1.7
Identities = 8/24 (33%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
++ EEE++E++++ +++EEEE
Sbjct: 421 KKREEEKKEKKKKAFAGKKKEEEE 444
Score = 27.6 bits (62), Expect = 1.8
Identities = 9/26 (34%), Positives = 20/26 (76%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEV 115
++E++++ +++EEEEEEE+E+
Sbjct: 426 EKKEKKKKAFAGKKKEEEEEEEKEKK 451
>gnl|CDD|129416 TIGR00316, cdhC, CO dehydrogenase/CO-methylating acetyl-CoA
synthase complex, beta subunit. Nomenclature follows
the description for Methanosarcina thermophila. The
CO-methylating acetyl-CoA synthase is considered the
defining enzyme of the Wood-Ljungdahl pathway, used for
acetate catabolism by sulfate reducing bacteria but for
acetate biosynthesis by acetogenic bacteria such as
oorella thermoacetica (f. Clostridium thermoaceticum)
[Energy metabolism, Chemoautotrophy].
Length = 458
Score = 31.4 bits (71), Expect = 0.087
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEV 115
E +EEE EEEEE + EE E E
Sbjct: 400 VREVDEEEIEEEEEAMQPEEMEMEGF 425
Score = 31.0 bits (70), Expect = 0.13
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEVF 116
E +EEE EEEEE + EE E E F
Sbjct: 401 REVDEEEIEEEEEAMQPEEMEMEGF 425
Score = 29.4 bits (66), Expect = 0.42
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
+EEE EEEEE + EE E E EV
Sbjct: 403 VDEEEIEEEEEAMQPEEMEMEGFEV 427
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 30.7 bits (70), Expect = 0.100
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
E+EEEEEEE E EE +EEE+ +E
Sbjct: 99 KEKEEEEEEEVEVEELDEEEQIDEL 123
Score = 30.3 bits (69), Expect = 0.15
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+E+EEEEEEE E EE +EEE+ +E
Sbjct: 96 LDKKEKEEEEEEEVEVEELDEEEQIDE 122
Score = 29.9 bits (68), Expect = 0.18
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEEEE E EE +EEE+ +E E
Sbjct: 102 EEEEEEEVEVEELDEEEQIDELLE 125
Score = 29.9 bits (68), Expect = 0.18
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 79 WANHMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
W + L ++E+EEEEEEE E EE +EEE+ +
Sbjct: 86 WRKKVRKLLGLDKKEKEEEEEEEVEVEELDEEEQID 121
Score = 29.6 bits (67), Expect = 0.27
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEE E EE +EEE+ +E E+E
Sbjct: 103 EEEEEEVEVEELDEEEQIDELLEKE 127
Score = 28.4 bits (64), Expect = 0.61
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEEE E EE +EEE+ +E E+E
Sbjct: 105 EEEEVEVEELDEEEQIDELLEKEL 128
Score = 28.4 bits (64), Expect = 0.63
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEV 115
EE E EE +EEE+ +E E+E ++
Sbjct: 106 EEEVEVEELDEEEQIDELLEKELAKL 131
Score = 28.4 bits (64), Expect = 0.73
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
EEE E EE +EEE+ +E E+E
Sbjct: 104 EEEEEVEVEELDEEEQIDELLEKELA 129
Score = 26.1 bits (58), Expect = 3.9
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEE 113
E EE +EEE+ +E E+E +
Sbjct: 106 EEEVEVEELDEEEQIDELLEKELAKL 131
Score = 25.7 bits (57), Expect = 5.3
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
E EE +EEE+ +E E+E + +
Sbjct: 108 EVEVEELDEEEQIDELLEKELAKLKR 133
Score = 25.3 bits (56), Expect = 7.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE +EEE+ +E E+E + + E+
Sbjct: 112 EELDEEEQIDELLEKELAKLKREK 135
Score = 25.3 bits (56), Expect = 8.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE +EEE+ +E E+E + + E
Sbjct: 111 VEELDEEEQIDELLEKELAKLKRE 134
>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha
subunit. The alpha-subunit of the TRAP complex (TRAP
alpha) is a single-spanning membrane protein of the
endoplasmic reticulum (ER) which is found in proximity
of nascent polypeptide chains translocating across the
membrane.
Length = 281
Score = 30.9 bits (70), Expect = 0.12
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
E+EE+E EE+E E EEEE+EE
Sbjct: 46 DEDEEDEAVVEEDENELTEEEEDEE 70
Score = 30.5 bits (69), Expect = 0.17
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEV 115
TE+EE E++ +E+EE+E EE+E
Sbjct: 35 TEDEEAEDDVVDEDEEDEAVVEEDEN 60
Score = 30.5 bits (69), Expect = 0.18
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+E+EE+E EE+E E EEEE+E
Sbjct: 44 VVDEDEEDEAVVEEDENELTEEEEDE 69
Score = 29.7 bits (67), Expect = 0.29
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
EE+E EE+E E EEEE+EE EV
Sbjct: 49 EEDEAVVEEDENELTEEEEDEEGEV 73
Score = 28.2 bits (63), Expect = 0.97
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
+E+EE+E EE+E E EEEE
Sbjct: 43 DVVDEDEEDEAVVEEDENELTEEEE 67
Score = 27.4 bits (61), Expect = 2.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
L EE E++ +E+EE+E EE+E E
Sbjct: 34 LTEDEEAEDDVVDEDEEDEAVVEEDENE 61
Score = 27.0 bits (60), Expect = 2.6
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEEV 115
F++ ++ E+EE E++ +E+EE+E V
Sbjct: 27 PFASAQDLTEDEEAEDDVVDEDEEDEAVV 55
Score = 26.7 bits (59), Expect = 3.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
E E++ +E+EE+E EE+E E
Sbjct: 39 EAEDDVVDEDEEDEAVVEEDENELT 63
Score = 25.9 bits (57), Expect = 7.1
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 85 FYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+ + + E+EE E++ +E+EE+E E
Sbjct: 27 PFASAQDLTEDEEAEDDVVDEDEEDEAVVE 56
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 31.0 bits (70), Expect = 0.12
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
STEE + + ++ E+E+E E E +E
Sbjct: 540 STEERIDLDADDWTEDEDENEMETDE 565
Score = 27.9 bits (62), Expect = 1.3
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEE 110
++ E+E+E E E +EE ++
Sbjct: 550 DDWTEDEDENEMETDEERKK 569
Score = 27.9 bits (62), Expect = 1.3
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 92 EEEEEEEEEEEEEEEEEEEE 111
++ E+E+E E E +EE ++
Sbjct: 550 DDWTEDEDENEMETDEERKK 569
Score = 27.5 bits (61), Expect = 2.1
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
L ++ EE + + ++ E+E+E E E + +
Sbjct: 537 LRNSTEERIDLDADDWTEDEDENEMETDEERK 568
Score = 27.5 bits (61), Expect = 2.2
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEE 109
L + + E+E+E E E +EE ++
Sbjct: 547 LDADDWTEDEDENEMETDEERKK 569
Score = 26.8 bits (59), Expect = 3.3
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 82 HMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEE 113
H++ +S EE + + ++ E+E+E E
Sbjct: 529 HLYRLCWSLRNSTEERIDLDADDWTEDEDENE 560
>gnl|CDD|235672 PRK06012, flhA, flagellar biosynthesis protein FlhA; Validated.
Length = 697
Score = 30.9 bits (71), Expect = 0.12
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 85 FYLFSTEEEEEEEEEEEEEEEEEEEEEEEEV 115
+ L E++ E EE EEEE E EEE
Sbjct: 324 YRLRKREKKAAELAAEEAEEEEAAEPEEESW 354
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 30.9 bits (70), Expect = 0.13
Identities = 17/25 (68%), Positives = 22/25 (88%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
EE+E +E+EEEEE EEEEEEE+E+
Sbjct: 261 EEKELKEDEEEEETEEEEEEEDEDE 285
Score = 29.8 bits (67), Expect = 0.31
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+ EE+E +E+EEEEE EEEEEEE
Sbjct: 258 DYVEEKELKEDEEEEETEEEEEEE 281
Score = 29.4 bits (66), Expect = 0.39
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
EE+E +E+EEEEE EEEEEEE+
Sbjct: 257 GDYVEEKELKEDEEEEETEEEEEEED 282
Score = 29.4 bits (66), Expect = 0.42
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEV 115
+ + EE+E +E+EEEEE EEEEE
Sbjct: 255 QDGDYVEEKELKEDEEEEETEEEEEE 280
Score = 27.9 bits (62), Expect = 1.2
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 89 STEEEEEEEEEEEEEEEEEEE 109
E+EEEEE EEEEEEE+E+E
Sbjct: 265 LKEDEEEEETEEEEEEEDEDE 285
Score = 27.9 bits (62), Expect = 1.3
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
++ + EE+E +E+EEEEE EEEE
Sbjct: 254 DQDGDYVEEKELKEDEEEEETEEEE 278
Score = 27.5 bits (61), Expect = 2.0
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
+++ + EE+E +E+EEEEE EEE
Sbjct: 254 DQDGDYVEEKELKEDEEEEETEEEE 278
Score = 26.3 bits (58), Expect = 4.5
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
EE+++++ + EE+E +E+EEEEE
Sbjct: 250 EEDDDQDGDYVEEKELKEDEEEEET 274
Score = 25.9 bits (57), Expect = 6.7
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEV 115
E+++++ + EE+E +E+EEEEE
Sbjct: 249 DEEDDDQDGDYVEEKELKEDEEEEETE 275
Score = 25.9 bits (57), Expect = 6.9
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
++++ + EE+E +E+EEEEE EE
Sbjct: 253 DDQDGDYVEEKELKEDEEEEETEE 276
Score = 25.6 bits (56), Expect = 7.7
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 88 FSTEEEEEEEEEEEEEEEE 106
EEEE EEEEEEE+E+E
Sbjct: 267 EDEEEEETEEEEEEEDEDE 285
>gnl|CDD|215153 PLN02271, PLN02271, serine hydroxymethyltransferase.
Length = 586
Score = 30.9 bits (70), Expect = 0.15
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEVFSQCTH 121
++EE+EE+ EE +E+EEE+ E+E FS H
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEHFSILGH 84
Score = 30.2 bits (68), Expect = 0.21
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEEV 115
L +EE+EE+ EE +E+EEE+ E+E
Sbjct: 51 LLEQKEEKEEDAGEEGDEDEEEQGEDEHF 79
>gnl|CDD|233902 TIGR02506, NrdE_NrdA, ribonucleoside-diphosphate reductase, alpha
subunit. This model represents the alpha (large) chain
of the class I ribonucleotide reductase (RNR). RNR's are
responsible for the conversion of the ribose sugar of
RNA into the deoxyribose sugar of DNA. This is the
rate-limiting step of DNA biosynthesis. Class I RNR's
generate the required radical (on tyrosine) via a
"non-heme" iron cofactor which resides in the beta
(small) subunit. The alpha subunit contains the
catalytic and allosteric regulatory sites. The mechanism
of this enzyme requires molecular oxygen. E. Coli
contains two versions of this enzyme which are regulated
independently (NrdAB and NrdEF, where NrdA and NrdE are
the large chains ). Most organisms contain only one, but
the application of the gene symbols NrdA and NrdE are
somewhat arbitrary. This model identifies RNR's in
diverse clades of bacteria, eukaryotes as well as
numerous DNA viruses and phage [Purines, pyrimidines,
nucleosides, and nucleotides, 2'-Deoxyribonucleotide
metabolism].
Length = 617
Score = 30.8 bits (70), Expect = 0.15
Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 19/72 (26%)
Query: 53 PQLNDRIRIRNEFIGVTGPTCVRIKPWANHMFF---------YLFSTEEEEEEEEEEEEE 103
++R R N F G+ W +F YLFS + EE
Sbjct: 179 NNGDERRRCDNLFYGL----------WIPDLFMKRVEEDKDWYLFSPYDVPGLYGLYGEE 228
Query: 104 EEEEEEEEEEEV 115
EEE E E++V
Sbjct: 229 FEEEYERLEKDV 240
>gnl|CDD|111875 pfam03032, Brevenin, Brevenin/esculentin/gaegurin/rugosin family.
This family contains a number of defence peptides
secreted from the skin of amphibians, including the
opiate-like dermorphins and deltorphins, and the
antimicrobial dermoseptins and temporins. The alignment
for this family includes the signal peptide.
Length = 46
Score = 28.5 bits (64), Expect = 0.16
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 27.7 bits (62), Expect = 0.32
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 93 EEEEEEEEEEEEEEEEEEEEEEV 115
EEE+ E+EEE E+EEE EE+ EV
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEV 44
>gnl|CDD|222948 PHA02941, PHA02941, hypothetical protein; Provisional.
Length = 356
Score = 30.7 bits (69), Expect = 0.16
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 84 FFYLFSTEEEEEEEEEEEEEEEEEEEEEE 112
F F+ +EE EE +E++EEEE EEEEE
Sbjct: 321 LFNPFAIDEEMLEETQEQQEEEENEEEEE 349
Score = 28.8 bits (64), Expect = 0.71
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
EE EE +E++EEEE EEEEE + V
Sbjct: 329 EEMLEETQEQQEEEENEEEEENDTV 353
Score = 27.6 bits (61), Expect = 1.6
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEE 113
+EE EE +E++EEEE EEEEE
Sbjct: 328 DEEMLEETQEQQEEEENEEEEE 349
Score = 27.6 bits (61), Expect = 1.6
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 93 EEEEEEEEEEEEEEEEEEEEEE 114
+EE EE +E++EEEE EEEEE
Sbjct: 328 DEEMLEETQEQQEEEENEEEEE 349
Score = 27.2 bits (60), Expect = 2.2
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
LF+ +EE EE +E++EEEE EEEE
Sbjct: 321 LFNPFAIDEEMLEETQEQQEEEENEEEE 348
>gnl|CDD|162338 TIGR01398, FlhA, flagellar biosynthesis protein FlhA. This model
describes flagellar biosynthesis protein FlhA, one of a
large number of genes associated with the biosynthesis
of functional bacterial flagella. Homologs of many such
proteins, including FlhA, function in type III protein
secretion systems. A separate model describes InvA
(Salmonella enterica), LcrD (Yersinia enterocolitica),
HrcV (Xanthomonas), etc., all of which score below the
noise cutoff for this model [Cellular processes,
Chemotaxis and motility].
Length = 678
Score = 30.7 bits (70), Expect = 0.17
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 86 YLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
YL ++EEE E + +EE EEEEE
Sbjct: 308 YLRRRSKQEEEAAAEAAKAQEEAAEEEEE 336
Score = 29.9 bits (68), Expect = 0.33
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 86 YLFSTEEEEEEEEEEEEEEEEEEEEEEEEV 115
+ ++EEE E + +EE EEEE
Sbjct: 307 WYLRRRSKQEEEAAAEAAKAQEEAAEEEEE 336
Score = 29.2 bits (66), Expect = 0.49
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
++EEE E + +EE EEEEE +
Sbjct: 314 KQEEEAAAEAAKAQEEAAEEEEESI 338
Score = 28.8 bits (65), Expect = 0.75
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
EE E + +EE EEEEE ++
Sbjct: 317 EEAAAEAAKAQEEAAEEEEESINDI 341
Score = 28.0 bits (63), Expect = 1.3
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEE E + +EE EEEEE
Sbjct: 316 EEEAAAEAAKAQEEAAEEEEESIN 339
Score = 28.0 bits (63), Expect = 1.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEE 113
S +EEE E + +EE EEEEE
Sbjct: 313 SKQEEEAAAEAAKAQEEAAEEEEES 337
>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated.
Members of this family contain a region found
exclusively in eukaryotic sodium channels or their
subunits, many of which are voltage-gated. Members very
often also contain between one and four copies of
pfam00520 and, less often, one copy of pfam00612.
Length = 230
Score = 30.0 bits (68), Expect = 0.20
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
ST + E EEEEEE EEEEE +E E
Sbjct: 155 STVDLEPPEEEEEEIAEEEEEVKEPE 180
Score = 26.2 bits (58), Expect = 4.6
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEE 112
E EEEEEE EEEEE +E E+
Sbjct: 160 EPPEEEEEEIAEEEEEVKEPED 181
Score = 25.8 bits (57), Expect = 6.2
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEV 115
S+ E + E EEEEEE EEEEEV
Sbjct: 150 SSSEGSTVDLEPPEEEEEEIAEEEEEV 176
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 30.4 bits (69), Expect = 0.20
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
EEE E++++ E+EEE+
Sbjct: 265 PEEEPPPPPPPPEDDDDPPEDEEEQ 289
Score = 29.6 bits (67), Expect = 0.38
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE E++++ E+EEE++
Sbjct: 267 EEPPPPPPPPEDDDDPPEDEEEQD 290
Score = 29.2 bits (66), Expect = 0.50
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+ EEE E++++ E+
Sbjct: 262 PQPPEEEPPPPPPPPEDDDDPPED 285
Score = 29.2 bits (66), Expect = 0.56
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+ EEE E++++ E+E
Sbjct: 261 PPQPPEEEPPPPPPPPEDDDDPPEDE 286
Score = 29.2 bits (66), Expect = 0.57
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEE E++++ E+EE
Sbjct: 264 PPEEEPPPPPPPPEDDDDPPEDEE 287
Score = 28.8 bits (65), Expect = 0.65
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+ EEE E++++
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPP 283
Score = 28.8 bits (65), Expect = 0.69
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E E++++ E+EEE+++
Sbjct: 268 EPPPPPPPPEDDDDPPEDEEEQDD 291
Score = 28.5 bits (64), Expect = 0.86
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
E++++ E+EEE+++ E+ EE+
Sbjct: 276 PEDDDDPPEDEEEQDDAEDRALEEI 300
Score = 28.1 bits (63), Expect = 1.3
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E++++ E+EEE+++ E+
Sbjct: 272 PPPPPEDDDDPPEDEEEQDDAEDR 295
Score = 27.7 bits (62), Expect = 1.9
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E++++ E+EEE+++ E
Sbjct: 270 PPPPPPPEDDDDPPEDEEEQDDAE 293
Score = 26.5 bits (59), Expect = 3.7
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E++++ E+EEE+++ E+
Sbjct: 273 PPPPEDDDDPPEDEEEQDDAEDRA 296
Score = 26.1 bits (58), Expect = 5.0
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
E++++ E+EEE+++ E+ EE V
Sbjct: 277 EDDDDPPEDEEEQDDAEDRALEEIV 301
>gnl|CDD|185582 PTZ00373, PTZ00373, 60S Acidic ribosomal protein P2; Provisional.
Length = 112
Score = 29.5 bits (66), Expect = 0.24
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 93 EEEEEEEEEEEEEEEEEEEEEEVFS 117
+ E ++EE++EEEEEEE++ FS
Sbjct: 85 GAKAEAKKEEKKEEEEEEEDDLGFS 109
Score = 28.7 bits (64), Expect = 0.46
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEE 112
T + E ++EE++EEEEEEE++
Sbjct: 83 TAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.3 bits (63), Expect = 0.57
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+ + E ++EE++EEEEEEE+
Sbjct: 79 AGAATAGAKAEAKKEEKKEEEEEEED 104
Score = 27.6 bits (61), Expect = 1.1
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEE 111
+ + E ++EE++EEEEEEE++
Sbjct: 83 TAGAKAEAKKEEKKEEEEEEEDD 105
>gnl|CDD|219956 pfam08658, Rad54_N, Rad54 N terminal. This is the N terminal of
the DNA repair protein Rad54.
Length = 191
Score = 30.0 bits (68), Expect = 0.24
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
+ + EEE+ E+++E EE E +
Sbjct: 144 KPKIEEEKAEKDQEPEESETKLSNG 168
Score = 29.2 bits (66), Expect = 0.45
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEV 115
T +++ + EEE+ E+++E EE E ++
Sbjct: 140 TVDDKPKIEEEKAEKDQEPEESETKL 165
Score = 28.8 bits (65), Expect = 0.58
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
+ EEE+ E+++E EE E +
Sbjct: 145 PKIEEEKAEKDQEPEESETKLSNGP 169
Score = 28.8 bits (65), Expect = 0.61
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
++ + EEE+ E+++E EE E +
Sbjct: 143 DKPKIEEEKAEKDQEPEESETKLS 166
Score = 28.5 bits (64), Expect = 0.69
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+ +++ + EEE+ E+++E EE E +
Sbjct: 140 TVDDKPKIEEEKAEKDQEPEESETKL 165
Score = 28.1 bits (63), Expect = 1.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
EEE+ E+++E EE E + +V
Sbjct: 147 IEEEKAEKDQEPEESETKLSNGPKV 171
>gnl|CDD|215283 PLN02518, PLN02518, pheophorbide a oxygenase.
Length = 539
Score = 30.2 bits (68), Expect = 0.25
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVFSQCTH 121
S +++E EE+ E+E +E + FS H
Sbjct: 58 SEAALQQDEGEEQRVEQELGQESSDSKFSWRDH 90
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 30.2 bits (68), Expect = 0.25
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
S +E + EE E++ ++EEEE+ + E +SQ
Sbjct: 177 SEDESKSEESAEDDSDDEEEEDSDSEDYSQ 206
Score = 25.6 bits (56), Expect = 9.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVFS 117
S++EEE EE E+ E E +E S
Sbjct: 214 SSDEEEGEEAPSINYNEDTSESESDESDS 242
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or more
acidic residues. The function of members of this family
is unknown.
Length = 104
Score = 29.2 bits (66), Expect = 0.26
Identities = 5/25 (20%), Positives = 19/25 (76%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
E+ +++E+EE+E++ ++++++
Sbjct: 51 EDAAKKDEDEEDEDDVVLDDDDDDD 75
Score = 28.4 bits (64), Expect = 0.46
Identities = 5/27 (18%), Positives = 18/27 (66%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFS 117
E+ +++E+EE+E++ +++++
Sbjct: 50 AEDAAKKDEDEEDEDDVVLDDDDDDDD 76
Score = 28.0 bits (63), Expect = 0.66
Identities = 5/25 (20%), Positives = 18/25 (72%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
+ E+ +++E+EE+E++ ++++
Sbjct: 49 DAEDAAKKDEDEEDEDDVVLDDDDD 73
Score = 27.7 bits (62), Expect = 0.77
Identities = 4/26 (15%), Positives = 21/26 (80%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEV 115
+++E+EE+E++ ++++++++++
Sbjct: 54 AKKDEDEEDEDDVVLDDDDDDDDDDD 79
Score = 27.3 bits (61), Expect = 1.2
Identities = 4/25 (16%), Positives = 22/25 (88%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
++E+EE+E++ ++++++++++++
Sbjct: 56 KDEDEEDEDDVVLDDDDDDDDDDDL 80
Score = 26.5 bits (59), Expect = 2.2
Identities = 5/25 (20%), Positives = 17/25 (68%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
+ E+ +++E+EE+E++ +++
Sbjct: 47 AADAEDAAKKDEDEEDEDDVVLDDD 71
Score = 26.5 bits (59), Expect = 2.6
Identities = 5/26 (19%), Positives = 17/26 (65%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+ + E+ +++E+EE+E++ ++
Sbjct: 45 APAADAEDAAKKDEDEEDEDDVVLDD 70
Score = 25.7 bits (57), Expect = 4.4
Identities = 4/24 (16%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E+EE+E++ +++++++++++
Sbjct: 58 EDEEDEDDVVLDDDDDDDDDDDLP 81
Score = 25.0 bits (55), Expect = 6.9
Identities = 3/24 (12%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+EE+E++ +++++++++++ +
Sbjct: 59 DEEDEDDVVLDDDDDDDDDDDLPD 82
Score = 25.0 bits (55), Expect = 8.0
Identities = 5/26 (19%), Positives = 15/26 (57%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+ E+ +++E+EE+E++ +
Sbjct: 44 RAPAADAEDAAKKDEDEEDEDDVVLD 69
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 30.0 bits (68), Expect = 0.27
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEE 113
LFS EE + +E+ + E + E +++
Sbjct: 579 LFSGGEETKPQEQPAPKAEAKPERQQD 605
>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex. This Mediator
complex subunit was formerly known as Srb4 in yeasts or
Trap80 in Drosophila and human. The Med17 subunit is
located within the head domain and is essential for cell
viability to the extent that a mutant strain of
cerevisiae lacking it shows all RNA polymerase
II-dependent transcription ceasing at non-permissive
temperatures.
Length = 454
Score = 30.0 bits (68), Expect = 0.28
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
FS E +EEE++EE++ ++ EE ++ E F +
Sbjct: 67 FSEESDEEEDDEEDDNDDSEENKDTVEEFPK 97
Score = 28.9 bits (65), Expect = 0.63
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
+EEE++EE++ ++ EE ++ EE
Sbjct: 69 EESDEEEDDEEDDNDDSEENKDTVEEFPKA 98
Score = 26.6 bits (59), Expect = 4.5
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEV 115
EE +EEE++EE++ ++ EE ++ V
Sbjct: 66 DFSEESDEEEDDEEDDNDDSEENKDTV 92
Score = 25.8 bits (57), Expect = 6.7
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+ EE +EEE++EE++ ++ EE +
Sbjct: 64 KIDFSEESDEEEDDEEDDNDDSEENK 89
>gnl|CDD|218555 pfam05320, Pox_RNA_Pol_19, Poxvirus DNA-directed RNA polymerase 19
kDa subunit. This family contains several DNA-directed
RNA polymerase 19 kDa polypeptides. The Poxvirus
DNA-directed RNA polymerase (EC: 2.7.7.6) catalyzes
DNA-template-directed extension of the 3'-end of an RNA
strand by one nucleotide at a time.
Length = 167
Score = 29.7 bits (67), Expect = 0.29
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVFS 117
S +++ EE EEEEE+EE+ E E +V S
Sbjct: 12 SDDDDSEEYEEEEEDEEDAESLESSDVSS 40
Score = 28.9 bits (65), Expect = 0.51
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+ +++++ EE EEEEE+EE+ E E
Sbjct: 10 YESDDDDSEEYEEEEEDEEDAESLESS 36
Score = 28.5 bits (64), Expect = 0.75
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEVFSQC 119
E ++++ EE EEEEE+EE+ E S
Sbjct: 11 ESDDDDSEEYEEEEEDEEDAESLESSDV 38
Score = 27.0 bits (60), Expect = 2.5
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
+ E ++++ EE EEEEE+EE+ E
Sbjct: 8 IDYESDDDDSEEYEEEEEDEEDAES 32
Score = 25.8 bits (57), Expect = 5.5
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S + + E ++++ EE EEEEE+EE+
Sbjct: 4 SDDIIDYESDDDDSEEYEEEEEDEED 29
Score = 25.8 bits (57), Expect = 5.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 86 YLFSTEEEEEEEEEEEEEEEEEEEEEEE 113
Y ++ EE EEEEE+EE+ E E +
Sbjct: 10 YESDDDDSEEYEEEEEDEEDAESLESSD 37
>gnl|CDD|165442 PHA03171, PHA03171, UL37 tegument protein; Provisional.
Length = 499
Score = 30.0 bits (67), Expect = 0.31
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 79 WANHMFFYLFSTEEEEEEEEEEEEEE---EEEEEEEEEEV 115
+ LF+ EE EEE+ + E E EEE+EEEE+
Sbjct: 70 RPRDLTAALFAEAGEEAEEEDNDRECPDTEAEEEDEEEEI 109
>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366). This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 227 and
387 amino acids in length.
Length = 213
Score = 29.6 bits (67), Expect = 0.32
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEE 112
S E E E E E EEE E+
Sbjct: 131 SVNMTECTGPEPEPEPEPEEEPEK 154
Score = 28.8 bits (65), Expect = 0.50
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E E E E E EEE E+
Sbjct: 131 SVNMTECTGPEPEPEPEPEEEPEK 154
Score = 28.5 bits (64), Expect = 0.80
Identities = 9/25 (36%), Positives = 9/25 (36%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
E E E E E EEE E
Sbjct: 129 VCSVNMTECTGPEPEPEPEPEEEPE 153
Score = 26.5 bits (59), Expect = 4.0
Identities = 8/26 (30%), Positives = 8/26 (30%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S E E E E E EE
Sbjct: 125 SCCPVCSVNMTECTGPEPEPEPEPEE 150
Score = 26.1 bits (58), Expect = 4.3
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
+++ +E + +E+EEE++E
Sbjct: 188 KGAPDDDLDEYDYGDEDEEEDDEPP 212
Score = 26.1 bits (58), Expect = 4.4
Identities = 6/24 (25%), Positives = 16/24 (66%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEE 112
+ +++ +E + +E+EEE++E
Sbjct: 190 APDDDLDEYDYGDEDEEEDDEPPW 213
Score = 26.1 bits (58), Expect = 4.5
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+++ +E + +E+EEE++E
Sbjct: 190 APDDDLDEYDYGDEDEEEDDEPPW 213
Score = 26.1 bits (58), Expect = 5.5
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEE 113
+++ +E + +E+EEE++E
Sbjct: 190 APDDDLDEYDYGDEDEEEDDEPPW 213
Score = 25.8 bits (57), Expect = 5.7
Identities = 8/24 (33%), Positives = 8/24 (33%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E E E E E EEE
Sbjct: 128 PVCSVNMTECTGPEPEPEPEPEEE 151
>gnl|CDD|221668 pfam12619, MCM2_N, Mini-chromosome maintenance protein 2. This
domain family is found in eukaryotes, and is typically
between 138 and 153 amino acids in length. The family is
found in association with pfam00493. Mini-chromosome
maintenance (MCM) proteins are essential for DNA
replication. These proteins use ATPase activity to
perform this function.
Length = 145
Score = 29.2 bits (66), Expect = 0.34
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVF 116
EEEE E++ ++ +EE EEEE+ E++F
Sbjct: 6 EEEELEDDIDDLDEEAEEEEDGEDLF 31
Score = 27.7 bits (62), Expect = 1.2
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVF 116
+EEEE E++ ++ +EE EEEE+ E
Sbjct: 5 DEEEELEDDIDDLDEEAEEEEDGEDL 30
Score = 27.3 bits (61), Expect = 1.5
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E +EEEE E++ ++ +EE EEEE+
Sbjct: 3 EPDEEEELEDDIDDLDEEAEEEED 26
Score = 27.3 bits (61), Expect = 1.7
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
+EEEE E++ ++ +EE EEEE+
Sbjct: 4 PDEEEELEDDIDDLDEEAEEEEDGE 28
Score = 26.9 bits (60), Expect = 2.1
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+E +EEEE E++ ++ +EE EEEE
Sbjct: 2 DEPDEEEELEDDIDDLDEEAEEEE 25
>gnl|CDD|184416 PRK13955, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 130
Score = 29.0 bits (65), Expect = 0.35
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 83 MFFYLFSTEEEEEEEEEEEEEEEEEEEEE 111
MF +F+ ++EEE+EEE E +EEE
Sbjct: 85 MFVKVFNKLTSKKEEEKEEEIPEPTKEEE 113
Score = 26.7 bits (59), Expect = 2.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 97 EEEEEEEEEEEEEEEEEEVFSQ 118
++EEE+EEE E +EEE+ +
Sbjct: 96 KKEEEKEEEIPEPTKEEELLGE 117
Score = 26.7 bits (59), Expect = 2.5
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
L S +EEE+EEE E +EEE E ++ Q
Sbjct: 93 LTSKKEEEKEEEIPEPTKEEELLGEIRDLLKQ 124
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is
a family of uncharacterized proteins.
Length = 449
Score = 29.6 bits (66), Expect = 0.36
Identities = 10/24 (41%), Positives = 21/24 (87%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+E EEE EEE+++EE+++++++E
Sbjct: 43 KEAEEEAMEEEDDDEEDDDDDDDE 66
Score = 29.2 bits (65), Expect = 0.52
Identities = 10/24 (41%), Positives = 22/24 (91%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEE EEE+++EE+++++++E+E+
Sbjct: 46 EEEAMEEEDDDEEDDDDDDDEDED 69
Score = 28.8 bits (64), Expect = 0.77
Identities = 10/24 (41%), Positives = 21/24 (87%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E EEE EEE+++EE+++++++E+
Sbjct: 44 EAEEEAMEEEDDDEEDDDDDDDED 67
Score = 28.4 bits (63), Expect = 0.93
Identities = 9/24 (37%), Positives = 22/24 (91%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE EEE+++EE+++++++E+E++
Sbjct: 47 EEAMEEEDDDEEDDDDDDDEDEDD 70
Score = 27.7 bits (61), Expect = 1.6
Identities = 6/25 (24%), Positives = 24/25 (96%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
EE+++EE+++++++E+E+++++++
Sbjct: 51 EEEDDDEEDDDDDDDEDEDDDDDDD 75
Score = 27.7 bits (61), Expect = 1.9
Identities = 8/24 (33%), Positives = 22/24 (91%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E EEE+++EE+++++++E+E+++
Sbjct: 48 EAMEEEDDDEEDDDDDDDEDEDDD 71
Score = 27.3 bits (60), Expect = 2.6
Identities = 7/24 (29%), Positives = 23/24 (95%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEE+++EE+++++++E+E+++++
Sbjct: 50 MEEEDDDEEDDDDDDDEDEDDDDD 73
Score = 26.5 bits (58), Expect = 4.9
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 95 EEEEEEEEEEEEEEEEEEEEV 115
+E EEE EEE+++EE++++
Sbjct: 43 KEAEEEAMEEEDDDEEDDDDD 63
>gnl|CDD|237192 PRK12758, PRK12758, DNA topoisomerase IV subunit A; Provisional.
Length = 869
Score = 29.6 bits (67), Expect = 0.38
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 64 EFIGVTGPTCVRIKPWANHMFFYLFSTEEEEE---EEEEEEEEEEEEEEEEEEEVFSQ 118
EFI V G IK N + Y T E E EE EEE EE EE + E+V S+
Sbjct: 803 EFIAVKG-----IKAKGNRLTTYKVKTINELEPLPYEEPEEETAEEPEEVDPEDVKSE 855
Score = 26.1 bits (58), Expect = 6.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
EE EE EE + E+ + E++ ++E Q
Sbjct: 837 EEETAEEPEEVDPEDVKSEDDIDDEDTGQ 865
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 29.5 bits (66), Expect = 0.38
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S E + E E++E+ EE EEE+ EE
Sbjct: 305 SPEIPAKPEIEQDEDSEESEEEKNEE 330
Score = 28.4 bits (63), Expect = 0.90
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+ E E++E+ EE EEE+ EEE
Sbjct: 308 IPAKPEIEQDEDSEESEEEKNEEE 331
Score = 28.0 bits (62), Expect = 1.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E++E+ EE EEE+ EEE ++
Sbjct: 315 EQDEDSEESEEEKNEEEGGLSKKG 338
Score = 28.0 bits (62), Expect = 1.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E E++E+ EE EEE+ EEE +
Sbjct: 313 EIEQDEDSEESEEEKNEEEGGLSK 336
Score = 27.6 bits (61), Expect = 1.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEE 113
E+ EE EEE+ EEE ++ ++
Sbjct: 318 EDSEESEEEKNEEEGGLSKKGKK 340
Score = 27.6 bits (61), Expect = 1.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEE 114
E+ EE EEE+ EEE ++ ++
Sbjct: 318 EDSEESEEEKNEEEGGLSKKGKK 340
Score = 27.6 bits (61), Expect = 1.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E++E+ EE EEE+ EEE ++
Sbjct: 314 IEQDEDSEESEEEKNEEEGGLSKK 337
Score = 27.2 bits (60), Expect = 2.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E E++E+ EE EEE+ EEE
Sbjct: 312 PEIEQDEDSEESEEEKNEEEGGLS 335
Score = 26.5 bits (58), Expect = 4.5
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEE 112
+ EE EEE+ EEE ++ ++
Sbjct: 317 DEDSEESEEEKNEEEGGLSKKGKK 340
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 29.6 bits (66), Expect = 0.38
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 77 KPWANHMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+ + + YL + EE++ +EE+EEEE EEE ++EE
Sbjct: 200 EQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEE 237
Score = 29.2 bits (65), Expect = 0.44
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
TEE++ +EE+EEEE EEE ++EE +
Sbjct: 215 TEEKQPQEEQEEEEVEEEAKQEEGQ 239
Score = 27.7 bits (61), Expect = 1.7
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+EE+EEEE EEE ++EE + ++
Sbjct: 220 PQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 26.9 bits (59), Expect = 2.9
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+ +EE+EEEE EEE ++EE + +
Sbjct: 219 QPQEEQEEEEVEEEAKQEEGQGTD 242
Score = 26.5 bits (58), Expect = 3.4
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
E +E + EE++ +EE+EEEE EE Q
Sbjct: 208 EYLQEHKTEEKQPQEEQEEEEVEEEAKQ 235
Score = 26.2 bits (57), Expect = 5.7
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQCT 120
E + EE++ +EE+EEEE EEE ++ Q T
Sbjct: 212 EHKTEEKQPQEEQEEEEVEEEAKQEEGQGT 241
>gnl|CDD|217952 pfam04189, Gcd10p, Gcd10p family. eIF-3 is a multi-subunit complex
that stimulates translation initiation in vitro at
several different steps. This family corresponds to the
gamma subunit if eIF3. The Yeast protein Gcd10p has also
been shown to be part of a complex with the
methyltransferase Gcd14p that is involved in modifying
tRNA.
Length = 299
Score = 29.6 bits (67), Expect = 0.38
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 81 NHMFFYLFSTEEEEEEEEEEEEEEEEEEEEEE 112
N + ++ EE EEEE E EEE +
Sbjct: 268 NWLQYFEPPAEEIEEEEPEVLPEEELNTMKPS 299
Score = 28.0 bits (63), Expect = 1.1
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 85 FYLFSTEEEEEEEEEEEEEEEEEEEEEEE 113
Y EE EEEE E EEE +
Sbjct: 271 QYFEPPAEEIEEEEPEVLPEEELNTMKPS 299
Score = 27.3 bits (61), Expect = 2.0
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
L E EE EEEE E EEE +
Sbjct: 270 LQYFEPPAEEIEEEEPEVLPEEELNTMK 297
Score = 27.3 bits (61), Expect = 2.0
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
F EE EEEE E EEE +
Sbjct: 272 YFEPPAEEIEEEEPEVLPEEELNTMKPS 299
Score = 26.1 bits (58), Expect = 4.8
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 86 YLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+ EE EEEE E EEE +
Sbjct: 270 LQYFEPPAEEIEEEEPEVLPEEELNTMKP 298
>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional.
Length = 449
Score = 29.4 bits (66), Expect = 0.40
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVF 116
EEE + E EE E E+ E EE+
Sbjct: 394 EEEALQREAEERLEAEQAERAEEDAR 419
Score = 29.4 bits (66), Expect = 0.41
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEEE + E EE E E+ E EE
Sbjct: 393 EEEEALQREAEERLEAEQAERAEE 416
Score = 29.0 bits (65), Expect = 0.64
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEE 114
EE + E EE E E+ E EE+
Sbjct: 392 REEEEALQREAEERLEAEQAERAEEDA 418
Score = 28.6 bits (64), Expect = 0.93
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
L S EEEE + E EE E E+ E E
Sbjct: 388 LISQREEEEALQREAEERLEAEQAERAE 415
Score = 28.2 bits (63), Expect = 0.96
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+ + E EE E E+ E EE+ E
Sbjct: 397 ALQREAEERLEAEQAERAEEDARLRE 422
Score = 27.1 bits (60), Expect = 2.4
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E EE E E+ E EE+ E
Sbjct: 400 REAEERLEAEQAERAEEDARLREL 423
Score = 27.1 bits (60), Expect = 2.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
L E+E E+E+E EE + EEEEE
Sbjct: 420 LRELYPLPEDEFEDEDELEEAQPEEEEE 447
Score = 27.1 bits (60), Expect = 2.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
E+E E+E+E EE + EEEEE
Sbjct: 424 YPLPEDEFEDEDELEEAQPEEEEEA 448
Score = 27.1 bits (60), Expect = 2.9
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E EE E E+ E EE+ E
Sbjct: 401 EAEERLEAEQAERAEEDARLRELY 424
Score = 26.7 bits (59), Expect = 3.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEE 113
L+ E+E E+E+E EE + EEEEE
Sbjct: 423 LYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 26.7 bits (59), Expect = 3.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
E+E E+E+E EE + EEEE
Sbjct: 423 LYPLPEDEFEDEDELEEAQPEEEEE 447
Score = 26.7 bits (59), Expect = 4.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
E+E E+E+E EE + EEEEE
Sbjct: 424 YPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 26.3 bits (58), Expect = 4.4
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E E+ E EE+ E E
Sbjct: 405 RLEAEQAERAEEDARLRELYPLPE 428
Score = 26.3 bits (58), Expect = 4.5
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
E E+ E EE+ E E+E
Sbjct: 407 EAEQAERAEEDARLRELYPLPEDEF 431
Score = 26.3 bits (58), Expect = 4.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEE 114
E E+E E+E+E EE + EEE
Sbjct: 419 RLRELYPLPEDEFEDEDELEEAQPEEE 445
Score = 26.3 bits (58), Expect = 4.7
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
E E+ E EE+ E E+ F
Sbjct: 406 LEAEQAERAEEDARLRELYPLPEDEFED 433
Score = 26.3 bits (58), Expect = 4.8
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
EE+ E E+E E+E+E E
Sbjct: 414 AEEDARLRELYPLPEDEFEDEDELEEAQP 442
Score = 26.3 bits (58), Expect = 4.9
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE E E+ E EE+ E
Sbjct: 402 AEERLEAEQAERAEEDARLRELYP 425
Score = 25.9 bits (57), Expect = 6.0
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE E E+ E EE+ E
Sbjct: 403 EERLEAEQAERAEEDARLRELYPL 426
Score = 25.9 bits (57), Expect = 6.1
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE+ E E+E E+E+E
Sbjct: 413 RAEEDARLRELYPLPEDEFEDEDE 436
Score = 25.9 bits (57), Expect = 6.3
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEE 114
E+ E EE+ E E+E E
Sbjct: 406 LEAEQAERAEEDARLRELYPLPEDEFE 432
Score = 25.9 bits (57), Expect = 6.7
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVF 116
E EE+ E E+E E+E+
Sbjct: 412 ERAEEDARLRELYPLPEDEFEDEDEL 437
Score = 25.5 bits (56), Expect = 8.9
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E E E+ E EE+ E
Sbjct: 404 ERLEAEQAERAEEDARLRELYPLP 427
Score = 25.5 bits (56), Expect = 9.4
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
E EE+ E E+E E+E
Sbjct: 411 AERAEEDARLRELYPLPEDEFEDED 435
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 28.9 bits (65), Expect = 0.40
Identities = 6/24 (25%), Positives = 6/24 (25%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E E E EEE
Sbjct: 131 AEAAAAEAAAPAAEAAAAAAAEEE 154
Score = 28.5 bits (64), Expect = 0.62
Identities = 6/24 (25%), Positives = 6/24 (25%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E E E EEE
Sbjct: 132 EAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 27.7 bits (62), Expect = 1.1
Identities = 5/24 (20%), Positives = 5/24 (20%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E E E EE
Sbjct: 130 AAEAAAAEAAAPAAEAAAAAAAEE 153
Score = 26.6 bits (59), Expect = 3.0
Identities = 4/24 (16%), Positives = 4/24 (16%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E E E E
Sbjct: 129 AAAEAAAAEAAAPAAEAAAAAAAE 152
Score = 25.0 bits (55), Expect = 9.4
Identities = 5/20 (25%), Positives = 5/20 (25%)
Query: 90 TEEEEEEEEEEEEEEEEEEE 109
E E EEE
Sbjct: 136 AEAAAPAAEAAAAAAAEEEA 155
>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional.
Length = 249
Score = 29.3 bits (66), Expect = 0.41
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 83 MFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEEV 115
+FF+ E EE+EE E E+ E
Sbjct: 201 LFFWRDPEEAEEKEEAAAETAGVEDAAAAAAEA 233
>gnl|CDD|219038 pfam06459, RR_TM4-6, Ryanodine Receptor TM 4-6. This region covers
TM regions 4-6 of the ryanodine receptor 1 family.
Length = 217
Score = 29.3 bits (66), Expect = 0.42
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 85 FYLFSTEEEEEEEEEEEEEEEEEEEEEEE 113
FY ST EEEEEE ++ EE+EEE
Sbjct: 144 FYKVSTSPAEEEEEEGSGSGDDGEEDEEE 172
Score = 27.0 bits (60), Expect = 2.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVF 116
S EEEEEE ++ EE+EEE F
Sbjct: 150 SPAEEEEEEGSGSGDDGEEDEEEGIVYF 177
>gnl|CDD|100108 cd04411, Ribosomal_P1_P2_L12p, Ribosomal protein P1, P2, and L12p.
Ribosomal proteins P1 and P2 are the eukaryotic proteins
that are functionally equivalent to bacterial L7/L12.
L12p is the archaeal homolog. Unlike other ribosomal
proteins, the archaeal L12p and eukaryotic P1 and P2 do
not share sequence similarity with their bacterial
counterparts. They are part of the ribosomal stalk
(called the L7/L12 stalk in bacteria), along with 28S
rRNA and the proteins L11 and P0 in eukaryotes (23S
rRNA, L11, and L10e in archaea). In bacterial ribosomes,
L7/L12 homodimers bind the extended C-terminal helix of
L10 to anchor the L7/L12 molecules to the ribosome.
Eukaryotic P1/P2 heterodimers and archaeal L12p
homodimers are believed to bind the L10 equivalent
proteins, eukaryotic P0 and archaeal L10e, in a similar
fashion. P1 and P2 (L12p, L7/L12) are the only proteins
in the ribosome to occur as multimers, always appearing
as sets of dimers. Recent data indicate that most
archaeal species contain six copies of L12p (three
homodimers), while eukaryotes have two copies each of P1
and P2 (two heterodimers). Bacteria may have four or six
copies (two or three homodimers), depending on the
species. As in bacteria, the stalk is crucial for
binding of initiation, elongation, and release factors
in eukaryotes and archaea.
Length = 105
Score = 28.8 bits (64), Expect = 0.42
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEE 112
+T E E+ EE +EEEEEEE+E+
Sbjct: 77 ATAEPAEKAEEAKEEEEEEEDEDF 100
Score = 27.6 bits (61), Expect = 0.92
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVF 116
+T E E+ EE +EEEEEEE+E F
Sbjct: 73 ATAAATAEPAEKAEEAKEEEEEEEDEDF 100
Score = 27.2 bits (60), Expect = 1.5
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 93 EEEEEEEEEEEEEEEEEEEEEEVF 116
E E+ EE +EEEEEEE+E+ F
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDFGF 102
>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740). This
family consists of several uncharacterized plant
proteins of unknown function.
Length = 565
Score = 29.2 bits (65), Expect = 0.45
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 93 EEEEEEEEEEEEEEEEEEEEEEVF 116
EEEEE E EE+EE E+E +V
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVV 163
Score = 28.5 bits (63), Expect = 0.85
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 9/37 (24%)
Query: 87 LFSTEEEEEEEEEEEEE---------EEEEEEEEEEE 114
L EEEE E EE+EE +E+ EEEEEEE
Sbjct: 138 LVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEE 174
Score = 27.3 bits (60), Expect = 2.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEV 115
EEEEE E EE+EE E+E + V
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVV 163
>gnl|CDD|221342 pfam11960, DUF3474, Domain of unknown function (DUF3474). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria and eukaryotes. This domain
is typically between 126 to 140 amino acids in length.
This domain is found associated with pfam00487.
Length = 135
Score = 28.9 bits (65), Expect = 0.46
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 89 STEEEEEEEEEEEEEEEE 106
S EEEEEE +EEEEEE
Sbjct: 72 SVEEEEEENGNDEEEEEE 89
Score = 27.7 bits (62), Expect = 1.1
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 88 FSTEEEEEEEEEEEEEEEEE 107
+ EEEEEE +EEEEEE
Sbjct: 70 VQSVEEEEEENGNDEEEEEE 89
Score = 27.3 bits (61), Expect = 1.6
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 100 EEEEEEEEEEEEEEEVF 116
EEEEEE +EEEEE F
Sbjct: 74 EEEEEENGNDEEEEEEF 90
Score = 26.9 bits (60), Expect = 1.8
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 93 EEEEEEEEEEEEEEEE 108
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.9 bits (60), Expect = 1.8
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 94 EEEEEEEEEEEEEEEE 109
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.9 bits (60), Expect = 1.8
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 95 EEEEEEEEEEEEEEEE 110
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.9 bits (60), Expect = 1.8
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 96 EEEEEEEEEEEEEEEE 111
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.9 bits (60), Expect = 1.8
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 97 EEEEEEEEEEEEEEEE 112
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.9 bits (60), Expect = 1.8
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 98 EEEEEEEEEEEEEEEE 113
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.9 bits (60), Expect = 1.8
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 99 EEEEEEEEEEEEEEEE 114
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
>gnl|CDD|222762 pfam14456, alpha-hel2, Alpha-helical domain 2. An alpha-helical
domain found in gene neighborhoods encoding genes
containing bacterial homologs of components of the
ubiquitin modification pathway such as the E1, E2, Ub
and JAB peptidase proteins.
Length = 322
Score = 29.3 bits (66), Expect = 0.48
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 84 FFYLFSTEEEEEEEEEEEEEEEEEEEEEEEEVFS 117
++Y ++EEE E E E E++EE EE FS
Sbjct: 134 YWYWDGEDDEEEALEVLEGEGEDDEEAAAEEYFS 167
Score = 25.5 bits (56), Expect = 8.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQCT 120
E++EEE E E E E++EE E +
Sbjct: 140 EDDEEEALEVLEGEGEDDEEAAAEEYFSRV 169
Score = 25.5 bits (56), Expect = 9.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 83 MFFYLFSTEEEEEEEEEEEEEEEEEEEEEEE 113
++ EEE E E E E++EE EE
Sbjct: 135 WYWDGEDDEEEALEVLEGEGEDDEEAAAEEY 165
>gnl|CDD|227391 COG5058, LAG1, Protein transporter of the TRAM (translocating
chain-associating membrane) superfamily, longevity
assurance factor [Intracellular trafficking and
secretion].
Length = 395
Score = 29.0 bits (65), Expect = 0.49
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 83 MFFYLFSTEEEEEEEEEEEEEEEEEEEEEEE 113
+ + + E ++E ++E EEE + E E+
Sbjct: 362 VAYRVIWEGELKDERSDDESEEESDLESSED 392
Score = 26.3 bits (58), Expect = 4.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
E E ++E ++E EEE + E E+
Sbjct: 368 WEGELKDERSDDESEEESDLESSED 392
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 29.2 bits (66), Expect = 0.50
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVFS 117
+EE EE+EEE EEEE E E+E S
Sbjct: 147 EDSDEELSEEDEEEAAEEEEAEAEKEKAS 175
Score = 28.9 bits (65), Expect = 0.67
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E+ E +++++EEEE E EE+E+
Sbjct: 89 EQGLESDDDDDEEEEWEVEEDEDS 112
Score = 28.9 bits (65), Expect = 0.69
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E E+ E +++++EEEE E EE+E
Sbjct: 87 EAEQGLESDDDDDEEEEWEVEEDE 110
Score = 28.5 bits (64), Expect = 0.81
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E+ E +++++EEEE E EE+E+
Sbjct: 88 AEQGLESDDDDDEEEEWEVEEDED 111
Score = 28.5 bits (64), Expect = 0.84
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
E +++++EEEE E EE+E+ ++E
Sbjct: 91 GLESDDDDDEEEEWEVEEDEDSDDE 115
Score = 28.5 bits (64), Expect = 0.90
Identities = 10/28 (35%), Positives = 21/28 (75%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEEV 115
++++++EEEE E EE+E+ ++E E +
Sbjct: 92 LESDDDDDEEEEWEVEEDEDSDDEGEWI 119
Score = 28.5 bits (64), Expect = 0.96
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
+ E +++++EEEE E EE+E+ +
Sbjct: 90 QGLESDDDDDEEEEWEVEEDEDSDD 114
Score = 27.7 bits (62), Expect = 1.6
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
E +++++EEEE E EE+E+ ++
Sbjct: 89 EQGLESDDDDDEEEEWEVEEDEDSDD 114
Score = 27.3 bits (61), Expect = 1.9
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+E E+ E +++++EEEE E EE+
Sbjct: 86 KEAEQGLESDDDDDEEEEWEVEED 109
Score = 27.3 bits (61), Expect = 2.0
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
E +++E E+ E +++++EEEE EV
Sbjct: 82 ERKKKEAEQGLESDDDDDEEEEWEV 106
Score = 27.3 bits (61), Expect = 2.1
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
+++EEEE E EE+E+ ++E E +V
Sbjct: 97 DDDEEEEWEVEEDEDSDDEGEWIDV 121
Score = 27.3 bits (61), Expect = 2.3
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
++E E+ E +++++EEEE E EE
Sbjct: 85 KKEAEQGLESDDDDDEEEEWEVEE 108
Score = 26.9 bits (60), Expect = 2.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+E+ +EE EE+EEE EEEE E
Sbjct: 146 KEDSDEELSEEDEEEAAEEEEAEA 169
Score = 26.9 bits (60), Expect = 3.0
Identities = 10/24 (41%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEE +++E E+ E +++++EEEE
Sbjct: 80 EEERKKKEAEQGLESDDDDDEEEE 103
Score = 26.9 bits (60), Expect = 3.1
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEV 115
S +E E + E+EEE++E ++ +E+
Sbjct: 123 SDKEIESSDSEDEEEKDEAAKKAKEDS 149
Score = 26.9 bits (60), Expect = 3.3
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEE 111
E EE+EEE EEEE E E+E
Sbjct: 149 SDEELSEEDEEEAAEEEEAEAEKE 172
Score = 26.5 bits (59), Expect = 3.6
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+E+ +EE EE+EEE EEEE E
Sbjct: 145 AKEDSDEELSEEDEEEAAEEEEAE 168
Score = 26.5 bits (59), Expect = 4.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
E + E ++E E + E+EEE++E
Sbjct: 115 EGEWIDVESDKEIESSDSEDEEEKDE 140
Score = 26.5 bits (59), Expect = 4.4
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
E ++E E + E+EEE++E ++
Sbjct: 120 DVESDKEIESSDSEDEEEKDEAAKK 144
Score = 26.5 bits (59), Expect = 4.5
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+ +E+ +EE EE+EEE EEEE
Sbjct: 144 KAKEDSDEELSEEDEEEAAEEEEA 167
Score = 26.2 bits (58), Expect = 4.5
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+++E E+ E +++++EEEE E E
Sbjct: 84 KKKEAEQGLESDDDDDEEEEWEVE 107
Score = 26.2 bits (58), Expect = 4.7
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E ++E E + E+EEE++E ++
Sbjct: 122 ESDKEIESSDSEDEEEKDEAAKKA 145
Score = 26.2 bits (58), Expect = 5.7
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVF 116
++E E + E+EEE++E ++ +E
Sbjct: 124 DKEIESSDSEDEEEKDEAAKKAKEDS 149
Score = 25.8 bits (57), Expect = 6.5
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
++E E + E+EEE++E ++ + S
Sbjct: 123 SDKEIESSDSEDEEEKDEAAKKAKEDSD 150
Score = 25.8 bits (57), Expect = 7.6
Identities = 9/24 (37%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+EEE +++E E+ E +++++EEE
Sbjct: 79 KEEERKKKEAEQGLESDDDDDEEE 102
Score = 25.8 bits (57), Expect = 7.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S +E E + E ++E E + E+EEE
Sbjct: 112 SDDEGEWIDVESDKEIESSDSEDEEE 137
Score = 25.4 bits (56), Expect = 8.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
EEEE E EE+E+ ++E E + E
Sbjct: 98 DDEEEEWEVEEDEDSDDEGEWIDVES 123
Score = 25.4 bits (56), Expect = 8.6
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE +++E E+ E +++++EEEE
Sbjct: 81 EERKKKEAEQGLESDDDDDEEEEW 104
Score = 25.4 bits (56), Expect = 8.6
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+ E ++E E + E+EEE++E
Sbjct: 119 IDVESDKEIESSDSEDEEEKDEAA 142
Score = 25.4 bits (56), Expect = 8.6
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEE++E ++ +E+ +EE EE+E
Sbjct: 135 EEEKDEAAKKAKEDSDEELSEEDE 158
Score = 25.4 bits (56), Expect = 9.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
E EE+E+ ++E E + E ++E E
Sbjct: 105 EVEEDEDSDDEGEWIDVESDKEIES 129
>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional.
Length = 191
Score = 28.8 bits (65), Expect = 0.51
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
E E EE E+E EEE EEE E E+ +
Sbjct: 13 EETEVEEAVEDEVEEETVEEESEAELLDE 41
Score = 28.4 bits (64), Expect = 0.78
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
EEE EE E EE E+E EEE EE
Sbjct: 7 QVEEEVEETEVEEAVEDEVEEETVEE 32
Score = 27.7 bits (62), Expect = 1.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEV 115
+ E+E EEE EEE E E +EE+ ++
Sbjct: 20 AVEDEVEEETVEEESEAELLDEEQAKI 46
Score = 27.3 bits (61), Expect = 2.0
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
EE EE E EE E+E EEE EEE
Sbjct: 10 EEVEETEVEEAVEDEVEEETVEEES 34
Score = 26.9 bits (60), Expect = 2.4
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
E EE E EE E+E EEE EEE
Sbjct: 10 EEVEETEVEEAVEDEVEEETVEEES 34
Score = 26.9 bits (60), Expect = 2.5
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
EE E EE E+E EEE EEE E
Sbjct: 12 VEETEVEEAVEDEVEEETVEEESEA 36
Score = 26.9 bits (60), Expect = 2.8
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+ EE E EE E+E EEE EEE E
Sbjct: 8 VEEEVEETEVEEAVEDEVEEETVEEESE 35
Score = 25.3 bits (56), Expect = 7.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEV 115
+ E+ EEE EE E EE E+E EE
Sbjct: 2 EEKNEQVEEEVEETEVEEAVEDEVEEE 28
>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation
[Intracellular trafficking and secretion].
Length = 776
Score = 29.2 bits (65), Expect = 0.51
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEE 113
F E E EE E EEE E+ E+E
Sbjct: 370 FEKMEIENRNPEESEHEEEVEDYEDE 395
Score = 29.2 bits (65), Expect = 0.55
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFS 117
E E EE E EEE E+ E+E +
Sbjct: 374 EIENRNPEESEHEEEVEDYEDENDHSK 400
Score = 28.8 bits (64), Expect = 0.71
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFS 117
E+ E E EE E EEE E+ E+
Sbjct: 371 EKMEIENRNPEESEHEEEVEDYEDEND 397
Score = 27.6 bits (61), Expect = 1.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEVFSQC 119
E EE E EEE E+ E+E + C
Sbjct: 376 ENRNPEESEHEEEVEDYEDENDHSKRIC 403
Score = 26.9 bits (59), Expect = 3.7
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEEVF 116
F E+ E E EE E EEE E +
Sbjct: 364 FDDILYFEKMEIENRNPEESEHEEEVEDY 392
Score = 26.5 bits (58), Expect = 4.5
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQCTHLS 123
E+ E E EE E EEE E+ + H
Sbjct: 368 LYFEKMEIENRNPEESEHEEEVEDYEDENDHSK 400
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 29.1 bits (66), Expect = 0.51
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 83 MFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEEVFS 117
M F+ EE EE E E+E+ EEE+EEEE+E F
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFE 35
Score = 28.0 bits (63), Expect = 1.3
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
EE E E+E+ EEE+EEEE+E E Q
Sbjct: 11 LEELEAEKEKIEEEDEEEEKEGWFERLKQ 39
>gnl|CDD|100111 cd05833, Ribosomal_P2, Ribosomal protein P2. This subfamily
represents the eukaryotic large ribosomal protein P2.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P2 is located in the L12 stalk, with proteins
P1, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers). Bacteria may have four or six copies
of L7/L12 (two or three homodimers) depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plants have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site in the C-terminal region
of P2. TCS inactivates the ribosome by depurinating a
specific adenine in the sarcin-ricin loop of 28S rRNA.
Length = 109
Score = 28.4 bits (64), Expect = 0.54
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 95 EEEEEEEEEEEEEEEEEEEEVFS 117
++EE++EE EEE +++ F
Sbjct: 84 AAAKKEEKKEESEEESDDDMGFG 106
Score = 27.6 bits (62), Expect = 0.96
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 90 TEEEEEEEEEEEEEEEEEEE 109
++EE++EE EEE ++
Sbjct: 82 AAAAAKKEEKKEESEEESDD 101
Score = 27.6 bits (62), Expect = 0.96
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 93 EEEEEEEEEEEEEEEEEE 110
++EE++EE EEE ++
Sbjct: 84 AAAKKEEKKEESEEESDD 101
Score = 27.6 bits (62), Expect = 0.96
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 94 EEEEEEEEEEEEEEEEEE 111
++EE++EE EEE ++
Sbjct: 84 AAAKKEEKKEESEEESDD 101
Score = 27.6 bits (62), Expect = 0.98
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 89 STEEEEEEEEEEEEEEEEE 107
+ ++EE++EE EEE ++
Sbjct: 83 AAAAKKEEKKEESEEESDD 101
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 29.1 bits (65), Expect = 0.56
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
EE E+E E +E EE E E EV
Sbjct: 350 EESEDEVEIDESVIEEVAEMELLEV 374
Score = 29.1 bits (65), Expect = 0.56
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
ST+EE E+E E +E EE E E
Sbjct: 347 STDEESEDEVEIDESVIEEVAEMELL 372
Score = 28.7 bits (64), Expect = 0.76
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEV 115
EE +EE E+E E +E EEV
Sbjct: 341 DVVTEESTDEESEDEVEIDESVIEEV 366
Score = 28.4 bits (63), Expect = 1.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
TEE +EE E+E E +E EE E
Sbjct: 344 TEESTDEESEDEVEIDESVIEEVAE 368
Score = 27.2 bits (60), Expect = 2.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
E+E E +E EE E E E +V
Sbjct: 352 SEDEVEIDESVIEEVAEMELLEVQV 376
Score = 26.4 bits (58), Expect = 4.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEE 112
EE +EE E+E E +E EE
Sbjct: 342 VVTEESTDEESEDEVEIDESVIEE 365
Score = 26.4 bits (58), Expect = 4.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
+E + EE +EE E+E E +E V
Sbjct: 338 QEGDVVTEESTDEESEDEVEIDESV 362
Score = 26.0 bits (57), Expect = 6.8
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEE 113
+E+E E +E EE E E E +
Sbjct: 351 ESEDEVEIDESVIEEVAEMELLEVQ 375
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 28.8 bits (65), Expect = 0.61
Identities = 8/29 (27%), Positives = 22/29 (75%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
++E++++++ ++E+EE++E +E E S
Sbjct: 155 DDDEDDDDDDVDDEDEEKKEAKELEKLSD 183
Score = 28.0 bits (63), Expect = 1.5
Identities = 7/25 (28%), Positives = 22/25 (88%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
E+++E++++++ ++E+EE++E +E
Sbjct: 153 DEDDDEDDDDDDVDDEDEEKKEAKE 177
Score = 27.3 bits (61), Expect = 2.3
Identities = 6/28 (21%), Positives = 23/28 (82%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
+E+++E++++++ ++E+EE++E + +
Sbjct: 153 DEDDDEDDDDDDVDDEDEEKKEAKELEK 180
Score = 27.3 bits (61), Expect = 2.3
Identities = 6/24 (25%), Positives = 22/24 (91%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
++E+++E++++++ ++E+EE++E
Sbjct: 152 DDEDDDEDDDDDDVDDEDEEKKEA 175
Score = 27.3 bits (61), Expect = 2.5
Identities = 6/27 (22%), Positives = 19/27 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFS 117
+++++ ++E+EE++E +E E+ +
Sbjct: 160 DDDDDVDDEDEEKKEAKELEKLSDDDD 186
Score = 26.9 bits (60), Expect = 3.1
Identities = 6/24 (25%), Positives = 23/24 (95%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+++E+++E++++++ ++E+EE++E
Sbjct: 151 DDDEDDDEDDDDDDVDDEDEEKKE 174
Score = 26.9 bits (60), Expect = 3.2
Identities = 7/27 (25%), Positives = 20/27 (74%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFS 117
+++ ++E+EE++E +E E+ +++ F
Sbjct: 162 DDDVDDEDEEKKEAKELEKLSDDDDFV 188
Score = 26.5 bits (59), Expect = 4.9
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
++E+EE++E +E E+ ++++
Sbjct: 164 DVDDEDEEKKEAKELEKLSDDDDFVW 189
Score = 26.1 bits (58), Expect = 6.2
Identities = 6/27 (22%), Positives = 19/27 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFS 117
++ ++E+EE++E +E E+ ++++
Sbjct: 163 DDVDDEDEEKKEAKELEKLSDDDDFVW 189
Score = 26.1 bits (58), Expect = 6.6
Identities = 5/24 (20%), Positives = 23/24 (95%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
++++++E+++E++++++ ++E+EE
Sbjct: 148 DDDDDDEDDDEDDDDDDVDDEDEE 171
Score = 25.7 bits (57), Expect = 7.7
Identities = 5/24 (20%), Positives = 23/24 (95%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+++++E+++E++++++ ++E+EE+
Sbjct: 149 DDDDDEDDDEDDDDDDVDDEDEEK 172
Score = 25.7 bits (57), Expect = 8.4
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
E+EE++E +E E+ ++++ +E S+
Sbjct: 168 EDEEKKEAKELEKLSDDDDFVWDEDDSE 195
Score = 25.7 bits (57), Expect = 8.4
Identities = 6/27 (22%), Positives = 17/27 (62%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFS 117
+E+EE++E +E E+ ++++ +
Sbjct: 167 DEDEEKKEAKELEKLSDDDDFVWDEDD 193
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 29.0 bits (65), Expect = 0.62
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVF 116
EEE +E ++ + ++ EE ++ EE+
Sbjct: 286 EEEPDEPDQTDPDDGEETDQIPEELM 311
Score = 27.8 bits (62), Expect = 1.3
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E E EEE +E ++ + ++ EE
Sbjct: 280 PEPPEPEEEPDEPDQTDPDDGEET 303
Score = 27.5 bits (61), Expect = 2.0
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E E EEE +E ++ + ++ EE +
Sbjct: 281 EPPEPEEEPDEPDQTDPDDGEETD 304
Score = 27.1 bits (60), Expect = 3.0
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVF 116
EE +E ++ + ++ EE ++ EE +F
Sbjct: 287 EEPDEPDQTDPDDGEETDQIPEELMF 312
Score = 26.7 bits (59), Expect = 4.1
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEV 115
E EEE +E ++ + ++ EE +++
Sbjct: 283 PEPEEEPDEPDQTDPDDGEETDQI 306
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 29.0 bits (65), Expect = 0.63
Identities = 10/28 (35%), Positives = 23/28 (82%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
F E+++ +E+E+++E+E+E+E+E+E
Sbjct: 883 QFQENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 25.6 bits (56), Expect = 9.1
Identities = 11/29 (37%), Positives = 24/29 (82%)
Query: 86 YLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
YL S +E E+++ +E+E+++E+E+E+E+
Sbjct: 879 YLISQFQENEDDDADEDEDQDEDEDEDED 907
>gnl|CDD|182840 PRK10921, PRK10921, twin-arginine protein translocation system
subunit TatC; Provisional.
Length = 258
Score = 29.0 bits (65), Expect = 0.63
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 83 MFFYLFSTEEEEEEEEEEEEEEEEEEEEE 111
+FF F + EEE + E E E+ EE
Sbjct: 230 VFFSRFYVGKGRRREEENDAEAESEKTEE 258
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 28.9 bits (64), Expect = 0.65
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
+EE + + +E EE+EE++E EE
Sbjct: 307 HKEEVQSDRPDEIGEEKEEDDENEE 331
Score = 28.5 bits (63), Expect = 0.77
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEE 113
EE + + +E EE+EE++E EE
Sbjct: 307 HKEEVQSDRPDEIGEEKEEDDENEE 331
Score = 27.7 bits (61), Expect = 1.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E + + +E EE+EE++E EE E
Sbjct: 310 EVQSDRPDEIGEEKEEDDENEENE 333
Score = 27.4 bits (60), Expect = 1.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E +EE + + +E EE+EE++E
Sbjct: 305 EAHKEEVQSDRPDEIGEEKEEDDE 328
Score = 27.0 bits (59), Expect = 2.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 93 EEEEEEEEEEEEEEEEEEEEEEVFSQCTHL 122
EE + + +E EE+EE++E E + T L
Sbjct: 309 EEVQSDRPDEIGEEKEEDDENEENERHTEL 338
Score = 26.6 bits (58), Expect = 4.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+ + +E EE+EE++E EE E
Sbjct: 309 EEVQSDRPDEIGEEKEEDDENEENER 334
Score = 25.8 bits (56), Expect = 7.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E E +EE + + +E EE+EE
Sbjct: 302 ENAEAHKEEVQSDRPDEIGEEKEE 325
Score = 25.8 bits (56), Expect = 8.2
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+EE E E +EE + + +E E
Sbjct: 296 QQQEEVENAEAHKEEVQSDRPDEIGE 321
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 28.7 bits (64), Expect = 0.73
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+ EEE+E EEEEEE EEEEE + E+
Sbjct: 4 VLELEEEDESGEEEEEESEEEEETDSED 31
Score = 28.0 bits (62), Expect = 1.2
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE+E EEEEEE EEEEE + E++
Sbjct: 9 EEDESGEEEEEESEEEEETDSEDD 32
Score = 27.6 bits (61), Expect = 1.9
Identities = 18/25 (72%), Positives = 19/25 (76%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
TE E EEE+E EEEEEE EEEEE
Sbjct: 2 TEVLELEEEDESGEEEEEESEEEEE 26
Score = 26.0 bits (57), Expect = 6.2
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEE 113
E EEEEEE EEEEE + E++ E
Sbjct: 12 ESGEEEEEESEEEEETDSEDDME 34
Score = 25.6 bits (56), Expect = 8.6
Identities = 16/24 (66%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E E E EEE+E EEEEEE EEE
Sbjct: 1 ETEVLELEEEDESGEEEEEESEEE 24
>gnl|CDD|234456 TIGR04074, bacter_Hen1, 3' terminal RNA ribose
2'-O-methyltransferase Hen1. Members of this protein
family are bacterial Hen1, a 3' terminal RNA ribose
2'-O-methyltransferase that acts in bacterial RNA
repair. All members of the seed alignment belong to a
cassette with the RNA repair enzyme polynucleotide
kinase-phosphatase (Pnkp). Chemically similar Hen1 in
eukaryotes acts instead on small regulatory RNAs
[Transcription, RNA processing, Protein synthesis, tRNA
and rRNA base modification].
Length = 462
Score = 28.8 bits (65), Expect = 0.74
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEV 115
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEKPP 264
Score = 28.4 bits (64), Expect = 0.93
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 94 EEEEEEEEEEEEEEEEEEEEEVF 116
E +E E EE E EE +EE E
Sbjct: 241 EADEAEPEEAETEEAQEEAAEKP 263
Score = 28.4 bits (64), Expect = 0.94
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEE 112
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 26.9 bits (60), Expect = 3.4
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 75 RIKPWANHMFFYLFSTEEEEEEEEEEEEEEEEEEEE 110
+ A L +E E EE E EE +EE E+
Sbjct: 227 HRRSLARDALARLAEADEAEPEEAETEEAQEEAAEK 262
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 28.7 bits (64), Expect = 0.77
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E+ E E E + E+ EE+E+E++ E
Sbjct: 669 EDSESESESDGEDGEEDEQEDDAE 692
Score = 28.7 bits (64), Expect = 0.91
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
+E+E E E+ E E E + E+ EE
Sbjct: 660 DDEDECEAIEDSESESESDGEDGEE 684
Score = 28.3 bits (63), Expect = 1.1
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
+ E E E + E+ EE+E+E++ E
Sbjct: 670 DSESESESDGEDGEEDEQEDDAEAN 694
Score = 27.9 bits (62), Expect = 1.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEE 112
E E E + E+ EE+E+E++ E
Sbjct: 669 EDSESESESDGEDGEEDEQEDDAE 692
Score = 27.5 bits (61), Expect = 2.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
E E E + E+ EE+E+E++ E E
Sbjct: 672 ESESESDGEDGEEDEQEDDAEANEGVVP 699
Score = 27.1 bits (60), Expect = 2.4
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEE 113
E+ E E E + E+ EE+E+E++
Sbjct: 665 CEAIEDSESESESDGEDGEEDEQEDD 690
Score = 27.1 bits (60), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 7/35 (20%)
Query: 87 LFSTEEEEEE-------EEEEEEEEEEEEEEEEEE 114
LF EEE+E+ +E+E E E+ E E E +
Sbjct: 644 LFEGEEEDEDDLEETDDDEDECEAIEDSESESESD 678
Score = 27.1 bits (60), Expect = 3.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+E E E+ E E E + E+ EE+E
Sbjct: 663 DECEAIEDSESESESDGEDGEEDE 686
Score = 26.8 bits (59), Expect = 3.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E+E E E+ E E E + E+ EE+
Sbjct: 662 EDECEAIEDSESESESDGEDGEED 685
Score = 26.8 bits (59), Expect = 3.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEV 115
S E E + E+ EE+E+E++ E E V
Sbjct: 671 SESESESDGEDGEEDEQEDDAEANEGV 697
Score = 26.8 bits (59), Expect = 3.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
T+++E+E E E+ E E E + E+
Sbjct: 658 TDDDEDECEAIEDSESESESDGEDG 682
Score = 26.8 bits (59), Expect = 3.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E E E+ E E E + E+ EE+E+
Sbjct: 664 ECEAIEDSESESESDGEDGEEDEQ 687
>gnl|CDD|221620 pfam12527, DUF3727, Protein of unknown function (DUF3727). This
domain family is found in bacteria and eukaryotes, and
is approximately 100 amino acids in length.
Length = 100
Score = 27.6 bits (62), Expect = 0.79
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
E EE+E E EEE++++E+EEEE
Sbjct: 19 PEPEEDEILELEEEDDDDEDEEEEY 43
Score = 26.0 bits (58), Expect = 3.5
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEV 115
EE+E E EEE++++E+EEEE E+
Sbjct: 22 EEDEILELEEEDDDDEDEEEEYEL 45
Score = 25.6 bits (57), Expect = 4.6
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE+E E EEE++++E+EEEE E
Sbjct: 22 EEDEILELEEEDDDDEDEEEEYEL 45
>gnl|CDD|237549 PRK13897, PRK13897, type IV secretion system component VirD4;
Provisional.
Length = 606
Score = 28.6 bits (64), Expect = 0.79
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
EE E E EE+EE+++E++
Sbjct: 581 ASEETETITVPENNEEDEEDDDEDD 605
Score = 28.6 bits (64), Expect = 0.83
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE E E EE+EE+++E+++
Sbjct: 583 EETETITVPENNEEDEEDDDEDDD 606
Score = 28.6 bits (64), Expect = 0.95
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEE 113
S E E E EE+EE+++E+++
Sbjct: 582 SEETETITVPENNEEDEEDDDEDDD 606
Score = 28.6 bits (64), Expect = 0.95
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+ EE E E EE+EE+++E+
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDED 604
Score = 26.7 bits (59), Expect = 4.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+ E EE E E EE+EE+++E
Sbjct: 577 NNNEASEETETITVPENNEEDEEDDDE 603
>gnl|CDD|205480 pfam13300, DUF4078, Domain of unknown function (DUF4078). This
family is found from fungi to humans, but its exact
function is not known.
Length = 88
Score = 27.6 bits (62), Expect = 0.81
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 85 FYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
FY FS +EEE +E+ EE E+ EE E E +
Sbjct: 35 FYAFSKDEEERKEQMEELEKAREETERERK 64
>gnl|CDD|183731 PRK12766, PRK12766, 50S ribosomal protein L32e; Provisional.
Length = 232
Score = 28.3 bits (63), Expect = 0.82
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
E EE E E E+E EEEEEE+ +V
Sbjct: 60 EVSEETEAEVEDEGGEEEEEEDADV 84
Score = 27.5 bits (61), Expect = 1.5
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEV 115
S E E E E+E EEEEEE+ + E E+
Sbjct: 62 SEETEAEVEDEGGEEEEEEDADVETEL 88
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 28.8 bits (65), Expect = 0.83
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 20/93 (21%)
Query: 46 NCLIISTPQLNDRI--RIRNEFIGVTGP----TCV----RIK-PWANHMFFYLFSTEEEE 94
N I S + N + + N + TC+ RI P+ TEE E
Sbjct: 177 NSSIRSNIRSNKYLVSELINSMARIFSILLFITCLYYLGRIPSPFFTKKLKETSETEERE 236
Query: 95 EEEEEEEE---------EEEEEEEEEEEEVFSQ 118
EE + E E +E+E EE+ +FS+
Sbjct: 237 EETDVEIETTSETKGTKQEQEGSTEEDPSLFSE 269
Score = 27.3 bits (61), Expect = 2.6
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 86 YLFSTEEEEEEEEEEEEEEEEEEEEEEEEVFS 117
LFS E+E+ ++ E+ ++ E +E+++EE+F
Sbjct: 265 SLFSEEKEDPDKTEDLDKLEILKEKKDEELFW 296
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 28.1 bits (63), Expect = 0.93
Identities = 10/25 (40%), Positives = 21/25 (84%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
++E+E+++ ++ +EEE+EE+EEE
Sbjct: 25 DDEDEDDDVKDSWDEEEDEEKEEEK 49
Score = 28.1 bits (63), Expect = 1.1
Identities = 10/24 (41%), Positives = 20/24 (83%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E+E+++ ++ +EEE+EE+EEE+
Sbjct: 27 EDEDDDVKDSWDEEEDEEKEEEKA 50
Score = 28.1 bits (63), Expect = 1.2
Identities = 10/24 (41%), Positives = 20/24 (83%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEV 115
E+E+++ ++ +EEE+EE+EEE+
Sbjct: 27 EDEDDDVKDSWDEEEDEEKEEEKA 50
Score = 25.4 bits (56), Expect = 8.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE+E+ + E+EE+ E EE+ E
Sbjct: 67 EEKEKAKREKEEKGLRELEEDTPE 90
Score = 25.4 bits (56), Expect = 8.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E+E+ + E+EE+ E EE+ E+
Sbjct: 68 EKEKAKREKEEKGLRELEEDTPED 91
Score = 25.4 bits (56), Expect = 9.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+E+ + E+EE+ E EE+ E+E
Sbjct: 69 KEKAKREKEEKGLRELEEDTPEDE 92
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 28.0 bits (63), Expect = 1.1
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEEEE E EEEEEEE+EEE++
Sbjct: 19 KIEEEEEEEAPEAEEEEEEEDEEEKK 44
Score = 28.0 bits (63), Expect = 1.2
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEEE E EEEEEEE+EEE++E
Sbjct: 21 EEEEEEEAPEAEEEEEEEDEEEKKE 45
Score = 27.2 bits (61), Expect = 2.2
Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEEEE E EEEEEEE+EEE+
Sbjct: 18 EKIEEEEEEEAPEAEEEEEEEDEEEK 43
Score = 25.7 bits (57), Expect = 6.8
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE+ EEEEEEE E EEEEEEE+E
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDE 40
Score = 25.7 bits (57), Expect = 6.9
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
E+ EEEEEEE E EEEEEEE+EE
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEE 41
Score = 25.3 bits (56), Expect = 9.5
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVF 116
EEEE E EEEEEEE+EEE++E+ F
Sbjct: 22 EEEEEEAPEAEEEEEEEDEEEKKEKPGF 49
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 28.3 bits (63), Expect = 1.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
E+ E EE E +E EE+E E
Sbjct: 241 PDNNEDSEAGREESEGSDESEEDEAE 266
Score = 27.1 bits (60), Expect = 2.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE E +E EE+E E + E EE
Sbjct: 251 REESEGSDESEEDEAEATDGEGEE 274
Score = 26.0 bits (57), Expect = 6.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+T+ E EE E + E E+ E +E +
Sbjct: 267 ATDGEGEEGEMDAAEASEDSESDESD 292
Score = 26.0 bits (57), Expect = 7.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E E +E EE+E E + E EE E
Sbjct: 253 ESEGSDESEEDEAEATDGEGEEGE 276
Score = 25.6 bits (56), Expect = 9.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+ E EE E + E E+ E +E +E
Sbjct: 268 TDGEGEEGEMDAAEASEDSESDESDE 293
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 28.1 bits (62), Expect = 1.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEE 112
EE E E+E+E+E E E E E E
Sbjct: 598 EEREREKEKEKEREREREREAE 619
Score = 28.1 bits (62), Expect = 1.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEE 113
EE E E+E+E+E E E E E E
Sbjct: 598 EEREREKEKEKEREREREREAE 619
Score = 28.1 bits (62), Expect = 1.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 93 EEEEEEEEEEEEEEEEEEEEEE 114
EE E E+E+E+E E E E E E
Sbjct: 598 EEREREKEKEKEREREREREAE 619
Score = 27.3 bits (60), Expect = 2.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQCTH 121
E E E+E+E+E E E E E E S +H
Sbjct: 599 EREREKEKEKEREREREREAERAAKASSSSH 629
Score = 27.0 bits (59), Expect = 2.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+ E E++ EE E E+E+E+E E E
Sbjct: 588 AKREAEQKAREEREREKEKEKERERE 613
Score = 27.0 bits (59), Expect = 2.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEE 113
E++ EE E E+E+E+E E E E
Sbjct: 593 EQKAREEREREKEKEKERERERE 615
Score = 27.0 bits (59), Expect = 2.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEE 114
E++ EE E E+E+E+E E E E
Sbjct: 593 EQKAREEREREKEKEKERERERE 615
Score = 27.0 bits (59), Expect = 3.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
++ EE E E+E+E+E E E E E
Sbjct: 594 QKAREEREREKEKEKERERERERE 617
>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM
protein. Members of this protein family are designated
TraM and are found in a proposed transfer region of a
class of conjugative transposon found in the Bacteroides
lineage [Cellular processes, DNA transformation].
Length = 410
Score = 28.2 bits (63), Expect = 1.2
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 85 FYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
FY + +EE+E E EE E E
Sbjct: 136 FYEYPKTDEEKELLREVEELESRLATEPSP 165
Score = 25.5 bits (56), Expect = 10.0
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
E+E E EE E E E+
Sbjct: 145 EKELLREVEELESRLATEPSPAPEL 169
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 27.7 bits (62), Expect = 1.2
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 93 EEEEEEEEEEEEEEEEEEEEEEVFS 117
EEEE++EE E EEEEEEEE + F
Sbjct: 35 EEEEDDEEFEIEEEEEEEEVDSDFD 59
Score = 26.6 bits (59), Expect = 3.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEE 114
F E++E E ++EEE E+E + EE
Sbjct: 58 FDDSEDDEPESDDEEEGEKELQREERL 84
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called The
RES complex, pre-mRNA retention and splicing complex.
Subunits of this complex are not essential for viability
of yeasts but they are required for efficient splicing
in vitro and in vivo. Furthermore, inactivation of this
complex causes pre-mRNA leakage from the nucleus. Bud13
contains a unique, phylogenetically conserved C-terminal
region of unknown function.
Length = 141
Score = 27.7 bits (62), Expect = 1.3
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
EE+ EE+E E+EE+E +EE+E+E
Sbjct: 13 DIEEKREEKEREKEEKERKEEKEKE 37
Score = 26.5 bits (59), Expect = 3.3
Identities = 12/26 (46%), Positives = 21/26 (80%)
Query: 93 EEEEEEEEEEEEEEEEEEEEEEVFSQ 118
EE+ EE+E E+EE+E +EE+E+ + +
Sbjct: 15 EEKREEKEREKEEKERKEEKEKEWGK 40
>gnl|CDD|222440 pfam13897, GOLD_2, Golgi-dynamics membrane-trafficking. Sec14-like
Golgi-trafficking domain The GOLD domain is always found
combined with lipid- or membrane-association domains.
Length = 136
Score = 27.3 bits (61), Expect = 1.3
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 89 STEEEEEEEEEEEEEEEEEEE 109
S++EEEEEE EEEE E + E
Sbjct: 54 SSDEEEEEEAEEEEAETGDVE 74
Score = 26.2 bits (58), Expect = 4.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEE 112
E +EEEEEE EEEE E + E
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVE 74
Score = 26.2 bits (58), Expect = 4.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEE 113
E +EEEEEE EEEE E + E
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVE 74
Score = 26.2 bits (58), Expect = 4.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 93 EEEEEEEEEEEEEEEEEEEEEE 114
E +EEEEEE EEEE E + E
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVE 74
Score = 25.4 bits (56), Expect = 6.7
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 95 EEEEEEEEEEEEEEEEEEEEV 115
E +EEEEEE EEEE E +V
Sbjct: 53 ESSDEEEEEEAEEEEAETGDV 73
Score = 25.0 bits (55), Expect = 8.5
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEE 111
S +EEEEEE EEEE E + E
Sbjct: 52 SESSDEEEEEEAEEEEAETGDVE 74
>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional.
Length = 746
Score = 28.0 bits (62), Expect = 1.3
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 77 KPWANHMFFYLFSTEEEEEEEEEEEEEEE 105
+P+ + + Y + E +EE+ E+++ E
Sbjct: 592 RPYQSFLPPYGLADVELDEEDTEDDDAVE 620
Score = 26.0 bits (57), Expect = 7.2
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 94 EEEEEEEEEEEEEEEEEEEEEVFSQ 118
E +EE+ E+++ E + +Q
Sbjct: 606 VELDEEDTEDDDAVELPSTPSMGTQ 630
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 27.9 bits (62), Expect = 1.3
Identities = 10/26 (38%), Positives = 21/26 (80%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S + E+ E+E++ +E+E++++ EEEE
Sbjct: 218 SADSEDNEDEDDPKEDEDDDQGEEEE 243
Score = 27.9 bits (62), Expect = 1.5
Identities = 9/26 (34%), Positives = 20/26 (76%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+ E+ E+E++ +E+E++++ EEEE
Sbjct: 219 ADSEDNEDEDDPKEDEDDDQGEEEES 244
Score = 26.3 bits (58), Expect = 4.0
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
E+E++++ EEEE + E+ +
Sbjct: 231 KEDEDDDQGEEEESGSSDSLSEDSD 255
Score = 25.9 bits (57), Expect = 6.2
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+E E + E+ E+E++ +E+E+++
Sbjct: 212 LGDEPESADSEDNEDEDDPKEDEDDD 237
Score = 25.9 bits (57), Expect = 6.2
Identities = 7/25 (28%), Positives = 18/25 (72%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
+ E+ E+E++ +E+E++++ EE
Sbjct: 217 ESADSEDNEDEDDPKEDEDDDQGEE 241
Score = 25.5 bits (56), Expect = 7.9
Identities = 7/24 (29%), Positives = 18/24 (75%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E E + E+ E+E++ +E+E++++
Sbjct: 215 EPESADSEDNEDEDDPKEDEDDDQ 238
Score = 25.5 bits (56), Expect = 8.5
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEEE + E+ + EE E
Sbjct: 240 EEEESGSSDSLSEDSDASSEEMES 263
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 27.8 bits (62), Expect = 1.3
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEE 113
++E+ EEE++ E ++++ EE E
Sbjct: 72 DKEKLTEEEKKPESDDDKTEENE 94
Score = 27.8 bits (62), Expect = 1.3
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEE 114
++E+ EEE++ E ++++ EE E
Sbjct: 72 DKEKLTEEEKKPESDDDKTEENE 94
Score = 27.0 bits (60), Expect = 2.4
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S ++++E+ EEE++ E ++++ EE
Sbjct: 68 SKKKDKEKLTEEEKKPESDDDKTEEN 93
Score = 26.6 bits (59), Expect = 3.0
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
TEEE++ E ++++ EE E + + E
Sbjct: 76 LTEEEKKPESDDDKTEENENDPDNNE 101
Score = 26.3 bits (58), Expect = 3.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
E++ E ++++ EE E + + EE SQ
Sbjct: 80 EKKPESDDDKTEENENDPDNNEESGDSQ 107
Score = 25.5 bits (56), Expect = 9.1
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEVFS 117
EEE++ E ++++ EE E + +
Sbjct: 76 LTEEEKKPESDDDKTEENENDPDNNE 101
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 27.8 bits (62), Expect = 1.3
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S EE EEE+EE +E E+E EE+ E
Sbjct: 91 SEEENEEEDEESSDENEKETEEKTES 116
Score = 27.4 bits (61), Expect = 1.6
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE EEE EEE+EE +E E+E EE
Sbjct: 89 EESEEENEEEDEESSDENEKETEE 112
Score = 27.4 bits (61), Expect = 1.8
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEV 115
EEE EEE+EE +E E+E EE+
Sbjct: 89 EESEEENEEEDEESSDENEKETEEKTE 115
Score = 26.2 bits (58), Expect = 3.9
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
E EEE+EE +E E+E EE+ E V
Sbjct: 94 ENEEEDEESSDENEKETEEKTESNV 118
Score = 26.2 bits (58), Expect = 3.9
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEV 115
S ++E++ + E+E+EE EEE EEE+E
Sbjct: 75 SEDKEDKGDAEKEDEESEEENEEEDEE 101
Score = 25.9 bits (57), Expect = 5.6
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
E+E+EE EEE EEE+EE +E E
Sbjct: 82 GDAEKEDEESEEENEEEDEESSDENE 107
Score = 25.9 bits (57), Expect = 6.0
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEV 115
+ +E+EE EEE EEE+EE +E E+E
Sbjct: 84 AEKEDEESEEENEEEDEESSDENEKET 110
Score = 25.5 bits (56), Expect = 8.6
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEV 115
E+EE EEE EEE+EE +E E+E
Sbjct: 86 KEDEESEEENEEEDEESSDENEKETE 111
Score = 25.5 bits (56), Expect = 8.7
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
E++ + E+E+EE EEE EEE+EE
Sbjct: 77 DKEDKGDAEKEDEESEEENEEEDEES 102
Score = 25.5 bits (56), Expect = 9.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
E+EE +E E+E EE+ E E+E+
Sbjct: 98 EDEESSDENEKETEEKTESNVEKEI 122
Score = 25.5 bits (56), Expect = 9.3
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
+ E++E++ + E+E+EE EEE EEE
Sbjct: 73 ANSEDKEDKGDAEKEDEESEEENEEEDEES 102
>gnl|CDD|220063 pfam08895, DUF1840, Domain of unknown function (DUF1840). This
family of proteins are functionally uncharacterized.
Length = 105
Score = 27.2 bits (61), Expect = 1.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
EE E+E+++E+EE+EE V
Sbjct: 56 EEARRAPPAEDEDDDEDEEDEEPAV 80
Score = 26.0 bits (58), Expect = 3.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFS 117
EE E+E+++E+EE+EE S
Sbjct: 55 AEEARRAPPAEDEDDDEDEEDEEPAVS 81
>gnl|CDD|218328 pfam04921, XAP5, XAP5, circadian clock regulator. This protein is
found in a wide range of eukaryotes. It is a nuclear
protein and is suggested to be DNA binding. In plants,
this family is essential for correct circadian clock
functioning by acting as a light-quality regulator
coordinating the activities of blue and red light
signalling pathways during plant growth - inhibiting
growth in red light but promoting growth in blue light.
Length = 233
Score = 27.7 bits (62), Expect = 1.3
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
S +++EEE+E+E E+E++ +E E
Sbjct: 10 KLSFGDDDEEEDEDEGEDEKKVPKESSE 37
Score = 27.3 bits (61), Expect = 1.9
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEE 114
F ++EEE+E+E E+E++ +E E +
Sbjct: 13 FGDDDEEEDEDEGEDEKKVPKESSEPD 39
Score = 26.5 bits (59), Expect = 3.4
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEV 115
+++EEE+E+E E+E++ +E
Sbjct: 14 GDDDEEEDEDEGEDEKKVPKESSE 37
Score = 25.8 bits (57), Expect = 6.0
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+EEE+E+E E+E++ +E E +E
Sbjct: 17 DEEEDEDEGEDEKKVPKESSEPDE 40
>gnl|CDD|224712 COG1799, COG1799, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 167
Score = 27.7 bits (62), Expect = 1.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 84 FFYLFSTEEEEEEEEEEEEEEEEEEEEEEEEV 115
FF F ++EE+ EE+ +E + E EE
Sbjct: 10 FFGYFPLDDEEDYYEEDPRQEPRDPAVEPEEY 41
>gnl|CDD|221775 pfam12794, MscS_TM, Mechanosensitive ion channel inner membrane
domain 1. The small mechanosensitive channel, MscS, is
a part of the turgor-driven solute efflux system that
protects bacteria from lysis in the event of osmotic
shock. The MscS protein alone is sufficient to form a
functional mechanosensitive channel gated directly by
tension in the lipid bilayer. The MscS proteins are
heptamers of three transmembrane subunits with seven
converging M3 domains, and this domain is one of the
inner membrane domains.
Length = 339
Score = 28.0 bits (63), Expect = 1.4
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E + EEEEE E E EE
Sbjct: 268 AEILAQRAEEEEESSEGAAETIEE 291
Score = 27.2 bits (61), Expect = 2.0
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
E + EEEEE E E EE
Sbjct: 269 EILAQRAEEEEESSEGAAETIEEPE 293
Score = 27.2 bits (61), Expect = 2.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
EEEEE E E EE E + E + +Q
Sbjct: 275 AEEEEESSEGAAETIEEPELDLETISAQ 302
Score = 27.2 bits (61), Expect = 2.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
+ EEEEE E E EE E+
Sbjct: 270 ILAQRAEEEEESSEGAAETIEEPEL 294
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 27.8 bits (62), Expect = 1.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
++E + E E EE EEE V SQ
Sbjct: 247 DDELDVLREIEAEEAGIGPIEEEVVDSQ 274
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 27.9 bits (63), Expect = 1.5
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S EE+ E EE E EEEEE++EE
Sbjct: 62 SLEEQRERLEELAPELLEEEEEKKEE 87
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 27.8 bits (62), Expect = 1.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
T E ++ +EE+EE E+E EEE
Sbjct: 105 TRNYEADKLDEEQEERVEKEREEEL 129
Score = 27.4 bits (61), Expect = 1.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+ E ++ +EE+EE E+E EEE
Sbjct: 105 TRNYEADKLDEEQEERVEKEREEELA 130
Score = 27.4 bits (61), Expect = 1.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEE 110
+ ++ +EE+EE E+E EEE
Sbjct: 107 NYEADKLDEEQEERVEKEREEELA 130
Score = 26.6 bits (59), Expect = 3.4
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 80 ANHMFFYLFSTEEEEEEEEEEEEEEEEEE-----EEEEEE 114
N M LF E++EEEEEEEE+E + E EE+
Sbjct: 169 VNSMLEALFRREKKEEEEEEEEDEALIKSLSFGPETEEDR 208
Score = 26.2 bits (58), Expect = 5.4
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEVFS 117
++ +EE+EE E+E EEE + +
Sbjct: 111 DKLDEEQEERVEKEREEELAGDAMKK 136
Score = 25.5 bits (56), Expect = 8.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 95 EEEEEEEEEEEEEEEEEEEEVF 116
E++EEEEEEEE+E + +
Sbjct: 178 RREKKEEEEEEEEDEALIKSLS 199
>gnl|CDD|218258 pfam04774, HABP4_PAI-RBP1, Hyaluronan / mRNA binding family. This
family includes the HABP4 family of hyaluronan-binding
proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1.
HABP4 has been observed to bind hyaluronan (a
glucosaminoglycan), but it is not known whether this is
its primary role in vivo. It has also been observed to
bind RNA, but with a lower affinity than that for
hyaluronan. PAI-1 mRNA-binding protein specifically
binds the mRNA of type-1 plasminogen activator inhibitor
(PAI-1), and is thought to be involved in regulation of
mRNA stability. However, in both cases, the sequence
motifs predicted to be important for ligand binding are
not conserved throughout the family, so it is not known
whether members of this family share a common function.
Length = 106
Score = 27.0 bits (60), Expect = 1.5
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
EEE +E EEEE EEEE++E
Sbjct: 54 QAVEEEANKEGVVEEEEVEEEEDKE 78
Score = 26.6 bits (59), Expect = 1.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
E++ EEE +E EEEE EEEE
Sbjct: 50 VEEKQAVEEEANKEGVVEEEEVEEEE 75
Score = 26.2 bits (58), Expect = 2.6
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEE 112
+ EEE +E EEEE EEEE++E
Sbjct: 55 AVEEEANKEGVVEEEEVEEEEDKE 78
Score = 25.5 bits (56), Expect = 5.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
+ EEE +E EEEE EEEE++
Sbjct: 53 KQAVEEEANKEGVVEEEEVEEEEDK 77
Score = 25.5 bits (56), Expect = 5.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
+ EE++ EEE +E EEEE EE +
Sbjct: 48 NEVEEKQAVEEEANKEGVVEEEEVEEEEDK 77
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 27.7 bits (62), Expect = 1.6
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEV 115
E EEEEEE EE EEE EE+ +
Sbjct: 148 ELPEEEEEEPEEMEEELEEDAADR 171
Score = 26.9 bits (60), Expect = 2.6
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEE 113
E EEEEEE EE EEE EE+ +
Sbjct: 148 ELPEEEEEEPEEMEEELEEDAAD 170
Score = 26.2 bits (58), Expect = 5.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEEE EE EEE EE+ + +
Sbjct: 148 ELPEEEEEEPEEMEEELEEDAADRD 172
Score = 25.8 bits (57), Expect = 6.6
Identities = 16/25 (64%), Positives = 16/25 (64%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEE 113
E E E EEEEEE EE EEE EE
Sbjct: 142 KNEFELELPEEEEEEPEEMEEELEE 166
Score = 25.4 bits (56), Expect = 9.1
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E E EEEEEE EE EEE EE+
Sbjct: 146 ELELPEEEEEEPEEMEEELEEDAA 169
Score = 25.4 bits (56), Expect = 9.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEEEEE EE EEE EE+ + +
Sbjct: 151 EEEEEEPEEMEEELEEDAADRDAR 174
>gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal
structure and biogenesis].
Length = 252
Score = 27.6 bits (62), Expect = 1.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
+EEE EE+EE EE E +EE E
Sbjct: 228 LDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 25.3 bits (56), Expect = 9.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+EEE EE+EE EE E +EE
Sbjct: 226 GALDEEEAAIEEDEEVEEFEAKEE 249
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 27.4 bits (62), Expect = 1.7
Identities = 6/29 (20%), Positives = 7/29 (24%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEEV 115
+ E E E E E E
Sbjct: 75 VIEEEGEAEAAAAAEAAPEAPAPEPAPAA 103
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 27.7 bits (62), Expect = 1.7
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 79 WANHMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEEV 115
+ M L +++ EEE ++E E E E E +
Sbjct: 233 RLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEPI 269
Score = 26.2 bits (58), Expect = 5.5
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEVFS 117
+EE E+E + E++ +E E EE+
Sbjct: 200 QEEYEKEVKAEKKRQELERVEEKKLE 225
Score = 25.4 bits (56), Expect = 9.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEE 111
L E E+E + E++ +E E EE+
Sbjct: 198 LLQEEYEKEVKAEKKRQELERVEEK 222
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is
a family of fungal proteins whose function is not known.
Length = 126
Score = 27.2 bits (61), Expect = 1.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
+EE++ +EEE + + EE +E E E
Sbjct: 100 DEEKKLDEEEAKRQHEEAKEREREK 124
Score = 25.7 bits (57), Expect = 4.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+EE++ +EEE + + EE +E E
Sbjct: 98 ARDEEKKLDEEEAKRQHEEAKERE 121
Score = 25.3 bits (56), Expect = 7.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+EE++ +EEE + + EE +E E
Sbjct: 99 RDEEKKLDEEEAKRQHEEAKERER 122
>gnl|CDD|220077 pfam08938, DUF1916, Domain of unknown function (DUF1916). This
domain is found in various eukaryotic HBS1-like
proteins.
Length = 148
Score = 27.0 bits (60), Expect = 1.8
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 76 IKPWANHMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEEVFSQCTHLS 123
I P F Y ++ E EEE+E+E E+E E S+
Sbjct: 32 ISPTTAAQFIYSRRDGQQSMSVEPVEEEDEDEYEDENERRDSESVSNP 79
>gnl|CDD|216881 pfam02115, Rho_GDI, RHO protein GDP dissociation inhibitor.
Length = 200
Score = 27.3 bits (61), Expect = 1.8
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
E+E E+ EE E+EE+E+
Sbjct: 2 AEQEPTAEQAEEIAAEDEEDEDSVN 26
Score = 26.9 bits (60), Expect = 2.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
E+E E+ EE E+EE+E+ +
Sbjct: 3 EQEPTAEQAEEIAAEDEEDEDSVNYKP 29
>gnl|CDD|153040 pfam12606, RELT, Tumour necrosis factor receptor superfamily member
19. This family of proteins is found in bacteria and
eukaryotes. Proteins in this family are typically
between 49 and 288 amino acids in length. There are two
completely conserved residues (K and Y) that may be
functionally important. The members of tumor necrosis
factor receptor (TNFR) superfamily have been designated
as the "guardians of the immune system" due to their
roles in immune cell proliferation, differentiation,
activation, and death (apoptosis). The messenger RNA of
RELT is especially abundant in hematologic tissues such
as spleen, lymph node, and peripheral blood leukocytes
as well as in leukemias and lymphomas. RELT is able to
activate the NF-kappaB pathway and selectively binds
tumor necrosis factor receptor-associated factor 1.
Length = 50
Score = 25.7 bits (57), Expect = 1.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 86 YLFSTEEEEEEEEEEEEEEEEE 107
Y + + E+E EE++EEE+EE
Sbjct: 29 YRCTVDPLEDEPEEKKEEEKEE 50
Score = 23.7 bits (52), Expect = 9.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 90 TEEEEEEEEEEEEEEEEEE 108
T + E+E EE++EEE+EE
Sbjct: 32 TVDPLEDEPEEKKEEEKEE 50
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 27.7 bits (61), Expect = 1.9
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
E E EEEE+EE EE EE EE E ++
Sbjct: 105 GAENETVEEEEKEESREEREEVEETEGVTK 134
Score = 25.8 bits (56), Expect = 7.4
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S E E EEEE+EE EE EE EE
Sbjct: 104 SGAENETVEEEEKEESREEREEVEET 129
>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2. Transcripts
harbouring premature signals for translation termination
are recognised and rapidly degraded by eukaryotic cells
through a pathway known as nonsense-mediated mRNA decay.
In Saccharomyces cerevisiae, three trans-acting factors
(Upf1 to Upf3) are required for nonsense-mediated mRNA
decay.
Length = 171
Score = 27.3 bits (61), Expect = 2.0
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
S++EEE + ++E++EE + EEE+ V Q
Sbjct: 25 SSDEEEVDLPDDEQDEESDSEEEQIFVTRQ 54
Score = 27.0 bits (60), Expect = 2.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE+EE EE+E++E +EEE +
Sbjct: 11 EEDEELPEEDEDDESSDEEEVDLP 34
Score = 27.0 bits (60), Expect = 2.4
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEV 115
S ++ EE+EE EE+E++E +EEEV
Sbjct: 5 SESDDGEEDEELPEEDEDDESSDEEEV 31
Score = 27.0 bits (60), Expect = 2.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E+EE EE+E++E +EEE + +
Sbjct: 12 EDEELPEEDEDDESSDEEEVDLPD 35
Score = 26.6 bits (59), Expect = 3.4
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S + EE+EE EE+E++E +EEE +
Sbjct: 7 SDDGEEDEELPEEDEDDESSDEEEVD 32
Score = 26.2 bits (58), Expect = 4.7
Identities = 10/24 (41%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE+E++E +EEE + ++E++EE
Sbjct: 18 EEDEDDESSDEEEVDLPDDEQDEE 41
Score = 26.2 bits (58), Expect = 4.8
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+EE EE+E++E +EEE + ++
Sbjct: 13 DEELPEEDEDDESSDEEEVDLPDD 36
Score = 25.8 bits (57), Expect = 5.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE EE+E++E +EEE + ++E
Sbjct: 14 EELPEEDEDDESSDEEEVDLPDDE 37
Score = 25.8 bits (57), Expect = 5.2
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+E ++ EE+EE EE+E++E +EE
Sbjct: 4 ESESDDGEEDEELPEEDEDDESSDEE 29
Score = 25.8 bits (57), Expect = 5.9
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
EE+E++E +EEE + ++E++E
Sbjct: 18 EEDEDDESSDEEEVDLPDDEQDEESDS 44
Score = 25.4 bits (56), Expect = 6.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E EE+E++E +EEE + ++E+
Sbjct: 15 ELPEEDEDDESSDEEEVDLPDDEQ 38
Score = 25.4 bits (56), Expect = 8.5
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
EE+E++E +EEE + ++E++
Sbjct: 15 ELPEEDEDDESSDEEEVDLPDDEQD 39
Score = 25.0 bits (55), Expect = 9.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E +EEE + ++E++EE + EEE
Sbjct: 24 ESSDEEEVDLPDDEQDEESDSEEE 47
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 27.3 bits (60), Expect = 2.0
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
+ + EEEE EE + EEEE+EEV S
Sbjct: 172 PDVDNEEEERLEESDGREEEEDEEVGSD 199
Score = 26.1 bits (57), Expect = 5.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
EEEE EE + EEEE+EE + + +
Sbjct: 176 NEEEERLEESDGREEEEDEEVGSDSYGE 203
>gnl|CDD|217148 pfam02620, DUF177, Uncharacterized ACR, COG1399.
Length = 118
Score = 26.9 bits (60), Expect = 2.1
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 84 FFYLFSTEEEEEEEEEEEEEEEEEEEEEEE 113
F LF EEEE E+EE E+++EE E +E
Sbjct: 28 FEELFVPEEEEAEDEELEDDDEEILVEGDE 57
>gnl|CDD|178493 PLN02905, PLN02905, beta-amylase.
Length = 702
Score = 27.6 bits (61), Expect = 2.1
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 80 ANHMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
A M + ++EE++EEE + + +EE++ + E
Sbjct: 2 ATDMQKLIGTSEEDDEEEMDMDVKEEDDGDRRNRE 36
Score = 26.1 bits (57), Expect = 5.7
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 87 LFSTEEEEEEEEEE---EEEEEEEEEEEEEEVFSQ 118
L T EE++EEE + +EE++ + E+ +
Sbjct: 8 LIGTSEEDDEEEMDMDVKEEDDGDRRNREKHIPVT 42
>gnl|CDD|187737 cd09616, Peptidase_C12_UCH_L1_L3, Cysteine peptidase C12 containing
ubiquitin carboxyl-terminal hydrolase (UCH) families L1
and L3. This ubiquitin C-terminal hydrolase (UCH)
family includes UCH-L1 and UCH-L3, the two members
sharing around 53% sequence identity as well as
conserved catalytic residues. Both enzymes hydrolyze
carboxyl terminal esters and amides of ubiquitin (Ub).
UCH-L1, in dimeric form, has additional enzymatic
activity as a ubiquitin ligase. It is highly abundant in
the brain, constituting up to 2% of total protein, and
is expressed exclusively in neurons and testes. Abnormal
expression of UCH-L1 has been shown to correlate with
several forms of cancer, including several primary lung
tumors, lung tumor cell lines, and colorectal cancers.
Mutations in the UCH-L1 gene have been linked to
susceptibility to and protection from Parkinson's
disease (PD); dysfunction of the hydrolase activity can
lead to an accumulation of alpha-synuclein, which is
linked to Parkinson's disease (PD), while accumulation
of neurofibrillary tangles is linked to Alzheimer's
disease (AD). UCH-L3 hydrolyzes isopeptide bonds at the
C-terminal glycine of either Ub or Nedd8, a
ubiquitin-like protein. It can also interact with
Lys48-linked Ub dimers to protect them from degradation
while inhibiting its hydrolase activity at the same
time. Unlike UCH-L1, neither dimerization nor ligase
activity have been observed for UCH-L3. It has been
shown that levels of Nedd8 and the apoptotic protein p53
and Bax are elevated in UCH-L3 knockout mice upon
cryptorchid injury, possibly contributing to profound
germ cell loss via apoptosis.
Length = 222
Score = 27.2 bits (61), Expect = 2.1
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 87 LF-STEEEEEEEEEEEEEEEEEEEEEEEEVF 116
LF T+ EE +EEEEE +E+ +E E V+
Sbjct: 50 LFPITKAYEEFRKEEEEEIKEKGQEVSESVY 80
>gnl|CDD|235359 PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha;
Provisional.
Length = 310
Score = 27.4 bits (62), Expect = 2.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 85 FYLFSTEEEEEEEEEEEEEEEEEEEE 110
+F EE EE EEE EEEE E +
Sbjct: 220 LSVFVDLEEAEEAEEEVEEEEPEFDP 245
Score = 25.4 bits (57), Expect = 9.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 94 EEEEEEEEEEEEEEEEEEEEEVFS 117
+ EE EE EEE EEEE E + +
Sbjct: 225 DLEEAEEAEEEVEEEEPEFDPILL 248
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the
monomeric yeast and human topo I. Topo I enzymes are
divided into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. This family may represent more than
one structural domain.
Length = 215
Score = 27.3 bits (61), Expect = 2.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 81 NHMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEEVFSQCT 120
MF Y + +EE++ +EE++ + E+E+ EE + C
Sbjct: 88 TQMFAYFKAQKEEKKAMSKEEKKAIKAEKEKLEEEYGFCI 127
>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306). This
family of proteobacterial species proteins has no known
function.
Length = 115
Score = 26.5 bits (59), Expect = 2.2
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEV 115
EE EEEEE E E+EE+
Sbjct: 26 EEEAAAAAPAPAPEEEEEAELEDEEL 51
Score = 25.7 bits (57), Expect = 4.3
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
T EEE EEEEE E E+
Sbjct: 24 TAEEEAAAAAPAPAPEEEEEAELED 48
Score = 25.3 bits (56), Expect = 5.8
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEV 115
E EEE EEEEE E+
Sbjct: 21 PAETAEEEAAAAAPAPAPEEEEEAEL 46
>gnl|CDD|235562 PRK05687, fliH, flagellar assembly protein H; Validated.
Length = 246
Score = 27.2 bits (61), Expect = 2.3
Identities = 9/26 (34%), Positives = 9/26 (34%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVF 116
E E E E EE EEE
Sbjct: 29 EPPPPEPAAPPPEPPEPEEVPEEEAA 54
>gnl|CDD|224217 COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 696
Score = 27.2 bits (61), Expect = 2.4
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Query: 83 MFF--YLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+ F YL S +E++ EE+E+ EE ++EEEEEE
Sbjct: 316 LAFLAYLLSKRKEQQAEEKEKPAEEAKKEEEEEE 349
Score = 27.2 bits (61), Expect = 2.8
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 86 YLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
L +E++ EE+E+ EE ++EEEEEEE
Sbjct: 322 LLSKRKEQQAEEKEKPAEEAKKEEEEEEE 350
Score = 26.8 bits (60), Expect = 3.0
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
++ EE+E+ EE ++EEEEEEEE V
Sbjct: 329 QQAEEKEKPAEEAKKEEEEEEEESV 353
Score = 26.4 bits (59), Expect = 4.3
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
E++ EE+E+ EE ++EEEEEEEE
Sbjct: 328 EQQAEEKEKPAEEAKKEEEEEEEESVDD 355
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 27.3 bits (61), Expect = 2.4
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEE 113
EE+E+E+ + EEE+E+++E+
Sbjct: 320 GKSVSEEDEDEDSDSEEEDEDDDED 344
Score = 26.6 bits (59), Expect = 4.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
E ++EE + E EE E E EEE
Sbjct: 382 AEARKKEENDAEIEELRRELEGEEE 406
Score = 26.6 bits (59), Expect = 4.4
Identities = 9/24 (37%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+ EE+E+E+ + EEE+E+++E+
Sbjct: 321 KSVSEEDEDEDSDSEEEDEDDDED 344
Score = 26.2 bits (58), Expect = 5.3
Identities = 10/26 (38%), Positives = 22/26 (84%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S EE+E+E+ + EEE+E+++E++++
Sbjct: 322 SVSEEDEDEDSDSEEEDEDDDEDDDD 347
Score = 25.8 bits (57), Expect = 6.7
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E + EE+E+E+ + EEE+E+++
Sbjct: 319 EGKSVSEEDEDEDSDSEEEDEDDD 342
Score = 25.8 bits (57), Expect = 7.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
+EE + E EE E E EEE +EE
Sbjct: 387 KEENDAEIEELRRELEGEEESDEEE 411
Score = 25.8 bits (57), Expect = 7.7
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
E EE E E EEE +EEE EE
Sbjct: 392 AEIEELRRELEGEEESDEEENEEPS 416
>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed.
Length = 390
Score = 27.1 bits (61), Expect = 2.5
Identities = 9/28 (32%), Positives = 21/28 (75%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
EE EEE++++ +++ +E+++E EV +
Sbjct: 362 EEVEEEDDDDWDDDWDEDDDEGVEVIYK 389
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional.
Length = 613
Score = 27.0 bits (61), Expect = 2.6
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVF 116
+ + +E+EEE+EE+EE EEE + +
Sbjct: 473 DLDLGKEDEEEKEEKEEAEEEFKPLL 498
Score = 25.8 bits (58), Expect = 6.3
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+ + + +E+EEE+EE+EE EEE +
Sbjct: 469 VARGDLDLGKEDEEEKEEKEEAEEEFK 495
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 26.7 bits (59), Expect = 2.6
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
E+EE E EE + EE EE ++
Sbjct: 73 EKEEVPELAAEELSDSEENEENDKKVDY 100
Score = 26.3 bits (58), Expect = 4.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+E+EE E EE + EE EE +
Sbjct: 70 KKKEKEEVPELAAEELSDSEENEEND 95
>gnl|CDD|235851 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed.
Length = 390
Score = 27.1 bits (61), Expect = 2.7
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEVFS 117
EE EEE+ EE + E EEE FS
Sbjct: 349 LEEAPAEEEDRREEYRQYELPEEETGFS 376
>gnl|CDD|163620 cd00845, MPP_UshA_N_like, Escherichia coli UshA-like family,
N-terminal metallophosphatase domain. This family
includes the bacterial enzyme UshA, and related enzymes
including SoxB, CpdB, YhcR, and CD73. All members have
a similar domain architecture which includes an
N-terminal metallophosphatase domain and a C-terminal
nucleotidase domain. The N-terminal metallophosphatase
domain belongs to a large superfamily of distantly
related metallophosphatases (MPPs) that includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). MPPs are functionally
diverse, but all share a conserved domain with an active
site consisting of two metal ions (usually manganese,
iron, or zinc) coordinated with octahedral geometry by a
cage of histidine, aspartate, and asparagine residues.
The conserved domain is a double beta-sheet sandwich
with a di-metal active site made up of residues located
at the C-terminal side of the sheets. This domain is
thought to allow for productive metal coordination.
Length = 252
Score = 26.8 bits (60), Expect = 2.7
Identities = 10/41 (24%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 65 FIGVTGPTCVRIKPWANHMFFYLFSTEEEEEEEEEEEEEEE 105
IG+T P P + F E EE E
Sbjct: 131 VIGLTTPDTPTYTPLGWIIGLP-FEDLAEAVAVAEELLAEG 170
>gnl|CDD|235224 PRK04140, PRK04140, hypothetical protein; Provisional.
Length = 317
Score = 26.7 bits (60), Expect = 2.8
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 94 EEEEEEEEEEEEEEEEEEEEEVFSQ 118
E+ ++E E+ EE+ E+E+ +
Sbjct: 190 EKVRDDEVTPEDPEEDPFEKEILNV 214
>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta;
Reviewed.
Length = 129
Score = 26.5 bits (59), Expect = 2.9
Identities = 9/24 (37%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+++ +EE+ +EE++E+EE+EE
Sbjct: 106 ILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 26.1 bits (58), Expect = 4.0
Identities = 8/24 (33%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+ +++ +EE+ +EE++E+EE+E
Sbjct: 105 DILPDDDFDEEDLDEEDDEDEEDE 128
Score = 25.4 bits (56), Expect = 7.2
Identities = 7/24 (29%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
++ +++ +EE+ +EE++E+EE+
Sbjct: 104 DDILPDDDFDEEDLDEEDDEDEED 127
>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional.
Length = 222
Score = 26.9 bits (59), Expect = 2.9
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 75 RIKPWANHMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
R+KP HM +++E +E++E+ EE E + E++E+ Q
Sbjct: 140 RLKP---HMMKTKSKNQKQENQEKQEKLEESEIQSEKQEQPSQQ 180
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 26.9 bits (59), Expect = 3.0
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEVF 116
+E+E E + +EE+ E+ +E E + +
Sbjct: 966 SEDESENDSSDEEDGEDWDELESKAAY 992
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 27.1 bits (60), Expect = 3.0
Identities = 6/24 (25%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+++ EE ++++ E+E ++ E+E
Sbjct: 86 QQQAEELQQKQAAEQERLKQLEKE 109
Score = 26.7 bits (59), Expect = 3.7
Identities = 7/28 (25%), Positives = 19/28 (67%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
++ EE ++++ E+E ++ E+E + +Q
Sbjct: 87 QQAEELQQKQAAEQERLKQLEKERLAAQ 114
Score = 25.9 bits (57), Expect = 6.1
Identities = 6/24 (25%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E+++ EE ++++ E+E ++ E+
Sbjct: 85 EQQQAEELQQKQAAEQERLKQLEK 108
Score = 25.9 bits (57), Expect = 7.0
Identities = 6/24 (25%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+E+++ EE ++++ E+E ++ E
Sbjct: 84 KEQQQAEELQQKQAAEQERLKQLE 107
Score = 25.9 bits (57), Expect = 7.0
Identities = 7/24 (29%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE+ +++E+++ EE ++++ E+E
Sbjct: 78 EEQRKKKEQQQAEELQQKQAAEQE 101
Score = 25.5 bits (56), Expect = 9.2
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
+ EE ++++ E+E ++ E+E
Sbjct: 87 QQAEELQQKQAAEQERLKQLEKERL 111
>gnl|CDD|177400 PHA02571, a-gt.4, hypothetical protein; Provisional.
Length = 109
Score = 26.2 bits (58), Expect = 3.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
ST+ EE +EE EE E + E E +
Sbjct: 5 STDVEELTDEEVEELLSELQARNEAEAEKK 34
>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein. This family consists of several
NOA36 proteins which contain 29 highly conserved
cysteine residues. The function of this protein is
unknown.
Length = 314
Score = 26.8 bits (59), Expect = 3.1
Identities = 6/29 (20%), Positives = 19/29 (65%)
Query: 86 YLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
Y + ++++E + +EEE+ ++++ E+
Sbjct: 269 YGYESDDDEGSSSNDYDEEEDGDDDDNED 297
Score = 26.8 bits (59), Expect = 3.5
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S ++E + +EEE+ ++++ E+
Sbjct: 273 SDDDEGSSSNDYDEEEDGDDDDNEDN 298
Score = 26.1 bits (57), Expect = 6.4
Identities = 5/24 (20%), Positives = 15/24 (62%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+E + +EEE+ ++++ E+ +
Sbjct: 276 DEGSSSNDYDEEEDGDDDDNEDND 299
Score = 25.7 bits (56), Expect = 7.2
Identities = 5/24 (20%), Positives = 15/24 (62%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E + +EEE+ ++++ E+ ++
Sbjct: 277 EGSSSNDYDEEEDGDDDDNEDNDD 300
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation
factor RRN3. This family consists of several eukaryotic
proteins which are homologous to the yeast RRN3 protein.
RRN3 is one of the RRN genes specifically required for
the transcription of rDNA by RNA polymerase I (Pol I) in
Saccharomyces cerevisiae.
Length = 554
Score = 26.9 bits (60), Expect = 3.1
Identities = 7/24 (29%), Positives = 19/24 (79%)
Query: 93 EEEEEEEEEEEEEEEEEEEEEEVF 116
++ ++EEEE +E++++E+++F
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMF 246
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 26.6 bits (59), Expect = 3.2
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E E +EE++ +EE+ E EE E+EE
Sbjct: 20 ENENKEEDKGKEEDLEFEEIEKEE 43
Score = 26.3 bits (58), Expect = 4.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
+EE+ E EE E+EE E+ EE EV +
Sbjct: 30 KEEDLEFEEIEKEEIIEDSEESNEVKIE 57
Score = 26.3 bits (58), Expect = 4.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQCTHL 122
E EE E+EE E+ EE E + EE+ + L
Sbjct: 35 EFEEIEKEEIIEDSEESNEVKIEELKDENNKL 66
Score = 26.3 bits (58), Expect = 4.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+EE+ E EE E+EE E+ EE
Sbjct: 27 DKGKEEDLEFEEIEKEEIIEDSEESN 52
Score = 26.3 bits (58), Expect = 5.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+E E +EE++ +EE+ E EE E+E
Sbjct: 17 CCKENENKEEDKGKEEDLEFEEIEKE 42
Score = 25.9 bits (57), Expect = 5.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
E +EE++ +EE+ E EE E+EE +
Sbjct: 21 NENKEEDKGKEEDLEFEEIEKEEII 45
Score = 25.9 bits (57), Expect = 6.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE+ +E E +EE++ +EE+ E E
Sbjct: 14 EEDCCKENENKEEDKGKEEDLEFE 37
Score = 25.5 bits (56), Expect = 7.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
E+ +E E +EE++ +EE+ E EE+
Sbjct: 15 EDCCKENENKEEDKGKEEDLEFEEI 39
Score = 25.1 bits (55), Expect = 9.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
+E E +EE++ +EE+ E EE E
Sbjct: 16 DCCKENENKEEDKGKEEDLEFEEIE 40
>gnl|CDD|234338 TIGR03742, PRTRC_F, PRTRC system protein F. A novel genetic system
characterized by seven (usually) major proteins,
including a ParB homolog and a ThiF homolog, is commonly
found on plasmids or in bacterial chromosomal regions
near phage, plasmid, or transposon markers. It is most
common among the beta Proteobacteria. We designate the
system PRTRC, or ParB-Related,ThiF-Related Cassette.
This protein family is designated protein F. It is the
most divergent of the families.
Length = 342
Score = 26.6 bits (59), Expect = 3.2
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 79 WANHMFFYLFSTEEEEEEE--EEEEEEEEEEEEEEEEEVFSQ 118
F Y++ E +EEE EE +E++E+ E V Q
Sbjct: 153 ALFDHFSYIYWEGETDEEEALEELCDEDDEDREAYLPSVVEQ 194
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM). This
family consists of several Plasmodium falciparum SPAM
(secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the alanine
heptad-repeat domain. Heptad repeats in which the a and
d position contain hydrophobic residues generate
amphipathic alpha-helices which give rise to helical
bundles or coiled-coil structures in proteins. SPAM is
an example of a P. falciparum antigen in which a
repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 26.4 bits (58), Expect = 3.2
Identities = 16/25 (64%), Positives = 22/25 (88%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
++EEEEEE+EEE EE E+ E+EEE+
Sbjct: 50 DDEEEEEEDEEEIEEPEDIEDEEEI 74
Score = 26.4 bits (58), Expect = 3.6
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
EE E+ E+EEE E+EEEEEE+EE
Sbjct: 62 IEEPEDIEDEEEIVEDEEEEEEDEE 86
Score = 26.0 bits (57), Expect = 5.2
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEV 115
+EEEEEE+EEE EE E+ E+EEE V
Sbjct: 50 DDEEEEEEDEEEIEEPEDIEDEEEIV 75
Score = 25.6 bits (56), Expect = 6.9
Identities = 15/24 (62%), Positives = 21/24 (87%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+E++EEEEEE+EEE EE E+ E+E
Sbjct: 48 QEDDEEEEEEDEEEIEEPEDIEDE 71
Score = 25.6 bits (56), Expect = 7.1
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E E+ E+EEE E+EEEEEE+EE+
Sbjct: 64 EPEDIEDEEEIVEDEEEEEEDEED 87
Score = 25.6 bits (56), Expect = 7.8
Identities = 15/24 (62%), Positives = 21/24 (87%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E++E++EEEEEE+EEE EE E+ E
Sbjct: 46 EKQEDDEEEEEEDEEEIEEPEDIE 69
Score = 25.2 bits (55), Expect = 9.3
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
EE EE E+ E+EEE E+EEEEEE
Sbjct: 59 EEEIEEPEDIEDEEEIVEDEEEEEE 83
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 26.8 bits (60), Expect = 3.3
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
EEE +EE +E++EE+++EE E +
Sbjct: 276 AEEERQEEAQEKKEEKKKEEREAKL 300
Score = 26.1 bits (58), Expect = 4.9
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
EEE +EE +E++EE+++EE E ++
Sbjct: 276 AEEERQEEAQEKKEEKKKEEREAKL 300
Score = 25.7 bits (57), Expect = 8.0
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFS 117
EEE +EE +E++EE+++EE E +
Sbjct: 275 AAEEERQEEAQEKKEEKKKEEREAKLA 301
Score = 25.7 bits (57), Expect = 8.2
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFS 117
EE +EE +E++EE+++EE E + S
Sbjct: 278 EERQEEAQEKKEEKKKEEREAKLAKLS 304
>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional.
Length = 487
Score = 26.6 bits (59), Expect = 3.4
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEEVF 116
LFS + E E +EE++++++E ++
Sbjct: 452 LFSMGGKLEMPGSESVSDEEDDDDDDEVLY 481
Score = 26.2 bits (58), Expect = 5.8
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 94 EEEEEEEEEEEEEEEEEEEEEVFSQCT 120
+ E E +EE++++++EV + T
Sbjct: 458 KLEMPGSESVSDEEDDDDDDEVLYRRT 484
Score = 26.2 bits (58), Expect = 6.0
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 83 MFFYLFSTEEEEEEEEEEEEEEEEEEEE 110
F + E E +EE++++++E
Sbjct: 451 PLFSMGGKLEMPGSESVSDEEDDDDDDE 478
Score = 25.4 bits (56), Expect = 9.8
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 82 HMFFYLFSTEEEEEEEEEEEEEEEEEEE 109
+F E E +EE++++++E
Sbjct: 451 PLFSMGGKLEMPGSESVSDEEDDDDDDE 478
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 26.9 bits (59), Expect = 3.5
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEEV 115
L S E++ + E+++ +E+E+EEE ++V
Sbjct: 3935 LVSKEDDNKALEDKDRQEKEDEEEMSDDV 3963
Score = 26.5 bits (58), Expect = 5.6
Identities = 7/24 (29%), Positives = 18/24 (75%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEV 115
E+++ +E+E+EEE ++ ++E+
Sbjct: 3946 EDKDRQEKEDEEEMSDDVGIDDEI 3969
>gnl|CDD|215369 PLN02685, PLN02685, iron superoxide dismutase.
Length = 299
Score = 26.5 bits (58), Expect = 3.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 94 EEEEEEEEEEEEEEEEEEEEEVF 116
+ E+EE E+EEE + E E++
Sbjct: 266 QREQEETRTEDEEEPDSEAVEMY 288
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 27.0 bits (60), Expect = 3.6
Identities = 10/34 (29%), Positives = 23/34 (67%)
Query: 81 NHMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+ F S EE+ ++++++E+++EEE + EE+
Sbjct: 732 DAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKA 765
Score = 26.2 bits (58), Expect = 6.6
Identities = 9/32 (28%), Positives = 23/32 (71%)
Query: 84 FFYLFSTEEEEEEEEEEEEEEEEEEEEEEEEV 115
F + + EE+ ++++++E+++EEE + EE+
Sbjct: 734 EFKISDSVEEKTKKKKKKEKKKEEEYKREEKA 765
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional.
Length = 447
Score = 26.7 bits (59), Expect = 3.7
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 86 YLFSTEEEEEEEEEEEEEEEEEE 108
Y +T +EE E E+EEEEEE EE
Sbjct: 425 YQDATADEEGEYEDEEEEEEYEE 447
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 26.2 bits (58), Expect = 3.8
Identities = 5/38 (13%), Positives = 24/38 (63%)
Query: 77 KPWANHMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+ W ++++++++++++++ E+++E+E E
Sbjct: 82 QKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAE 119
>gnl|CDD|219009 pfam06404, PSK, Phytosulfokine precursor protein (PSK). This
family consists of several plant specific phytosulfokine
precursor proteins. Phytosulfokines, are active as
either a pentapeptide or a C-terminally truncated
tetrapeptide. These compounds were first isolated
because of their ability to stimulate cell division in
somatic embryo cultures of Asparagus officinalis.
Length = 74
Score = 25.4 bits (56), Expect = 3.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
E E + +E+E E E E EEE
Sbjct: 30 EAAESSKVDEDEVVSECEGEGEEE 53
Score = 24.6 bits (54), Expect = 8.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEE 112
E + +E+E E E E EEE
Sbjct: 31 AAESSKVDEDEVVSECEGEGEEE 53
>gnl|CDD|216213 pfam00956, NAP, Nucleosome assembly protein (NAP). NAP proteins
are involved in moving histones into the nucleus,
nucleosome assembly and chromatin fluidity. They affect
the transcription of many genes.
Length = 236
Score = 26.5 bits (59), Expect = 3.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 84 FFYLFSTEEEEEEEEEEEEEEEEEEEEEEE 113
FF FS + +++++++EE EEE E + E
Sbjct: 186 FFNFFSPPKVPDDDDDDDEELEEELELDYE 215
>gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational
modification, protein turnover, chaperones].
Length = 623
Score = 26.8 bits (60), Expect = 3.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
S + + + E EEE+E + EEE++E
Sbjct: 476 FKSITKGDLDLELLEEEDEADSEEEKKE 503
Score = 26.1 bits (58), Expect = 6.9
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFS 117
+ + E EEE+E + EEE++E +
Sbjct: 482 GDLDLELLEEEDEADSEEEKKEFKPLL 508
>gnl|CDD|235378 PRK05256, PRK05256, condesin subunit E; Provisional.
Length = 238
Score = 26.5 bits (59), Expect = 3.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+ ++E +E EEE+ +EEEEE
Sbjct: 211 MPIENHLQQESSLNDETEEEQPDEEEEE 238
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 26.5 bits (58), Expect = 4.0
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQCTHLS 123
++ ++ E E+E E E E H S
Sbjct: 220 QQAPSPNTQQAVEHEDEPTEPEREGPPFPGHRS 252
Score = 26.5 bits (58), Expect = 4.7
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+ + + E + E EE E+EE
Sbjct: 62 AEQGHRQTESDTETAEESRHGEKEER 87
Score = 26.5 bits (58), Expect = 4.8
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVFSQC 119
S ++ E E+E E E E S
Sbjct: 224 SPNTQQAVEHEDEPTEPEREGPPFPGHRSHS 254
Score = 25.7 bits (56), Expect = 8.5
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEVFSQCTH 121
++ E E+E E E E ++
Sbjct: 226 NTQQAVEHEDEPTEPEREGPPFPGHRSHSY 255
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 26.3 bits (58), Expect = 4.2
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
LF E E+E++E +E EE+E + ++E
Sbjct: 90 LFPEESEKEQKEVSKETEEKEAIKAKKE 117
Score = 25.5 bits (56), Expect = 8.0
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEV 115
E++E +E EE+E + ++E++E+
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKK 122
Score = 25.1 bits (55), Expect = 8.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEV 115
EE E+E++E +E EE+E +
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAK 115
Score = 25.1 bits (55), Expect = 9.2
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
EE E+E++E +E EE+E + ++
Sbjct: 93 EESEKEQKEVSKETEEKEAIKAKKE 117
>gnl|CDD|218055 pfam04386, SspB, Stringent starvation protein B. Escherichia coli
stringent starvation protein B (SspB), is thought to
enhance the specificity of degradation of tmRNA-tagged
proteins by the ClpXP protease. The tmRNA tag, also
known as ssrA, is an 11-aa peptide added to the C
terminus of proteins stalled during translation, targets
proteins for degradation by ClpXP and ClpAP. SspB a
cytoplasmic protein that specifically binds to residues
1-4 and 7 of the tag. Binding of SspB enhances
degradation of tagged proteins by ClpX, and masks
sequence elements important for ClpA interactions,
inhibiting degradation by ClpA. However, more recent
work has cast doubt on the importance of SspB in
wild-type cells. SspB is encoded in an operon whose
synthesis is stimulated by carbon, amino acid, and
phosphate starvation. SspB may play a special role
during nutrient stress, for example by ensuring rapid
degradation of the products of stalled translation,
without causing a global increase in degradation of all
ClpXP substrates.
Length = 153
Score = 26.0 bits (58), Expect = 4.2
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 83 MFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+ F +EEEEEE+++ ++ E+E+ E ++
Sbjct: 108 LQFEPEEADEEEEEEDDDADDSPEDEDPEPKD 139
>gnl|CDD|217356 pfam03078, ATHILA, ATHILA ORF-1 family. ATHILA is a group of
Arabidopsis thaliana retrotransposons belonging to the
Ty3/gypsy family of the long terminal repeat (LTR) class
of eukaryotic retrotransposons. The central region of
ATHILA retrotransposons contains two or three open
reading frames (ORFs). This family represents the ORF1
product. The function of ORF1 is unknown.
Length = 456
Score = 26.5 bits (58), Expect = 4.3
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 85 FYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
L +T++ E EE EE+ +EE+E++E E
Sbjct: 361 EILGATDDIEHTEEATEEDVDEEDEDDEAE 390
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 26.7 bits (59), Expect = 4.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 95 EEEEEEEEEEEEEEEEEEEEV 115
EEE+ + EEE+EEE E V
Sbjct: 1 EEEQVNTQANEEEDEEELEAV 21
Score = 26.7 bits (59), Expect = 4.3
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
EEE+EEE E + +++EV
Sbjct: 10 NEEEDEEELEAVARSAGSDSDDDEV 34
Score = 26.7 bits (59), Expect = 4.4
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEV 115
+ EEE+EEE E + +++
Sbjct: 7 TQANEEEDEEELEAVARSAGSDSDDDE 33
Score = 25.9 bits (57), Expect = 7.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEE+ + EEE+EEE E
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARS 24
Score = 25.5 bits (56), Expect = 9.0
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
+ EEE+EEE E + +
Sbjct: 6 NTQANEEEDEEELEAVARSAGSDSD 30
Score = 25.5 bits (56), Expect = 9.5
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEEV 115
+ EE+EEE E + +++E
Sbjct: 9 ANEEEDEEELEAVARSAGSDSDDDEVPA 36
>gnl|CDD|212510 cd11724, TP_methylase_like, Uncharacterized subfamily of S-AdoMet
dependent tetrapyrrole methylases. TP-methylases use
S-AdoMet (S-adenosyl-L-methionine or SAM) in the
methylation of diverse substrates. Most members catalyze
various methylation steps in cobalamin (vitamin B12)
biosynthesis, other members like Diphthine synthase and
Ribosomal RNA small subunit methyltransferase I (RsmI)
act on other substrates. The function of this subfamily
is not known.
Length = 255
Score = 26.5 bits (59), Expect = 4.4
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 78 PWANHMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
PW + Y E E E+ E EEE++ + EE
Sbjct: 53 PWK-LFWHYGGKPWENLEAEKSPREAFEEEKKRQREE 88
>gnl|CDD|219939 pfam08619, Nha1_C, Alkali metal cation/H+ antiporter Nha1 C
terminus. The C terminus of the plasma membrane Nha1
antiporter plays an important role in the immediate cell
response to hypo-osmotic shock which prevents an
execessive loss of ions and water. This domain is found
with pfam00999.
Length = 430
Score = 26.3 bits (58), Expect = 4.4
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEEV 115
+ E+E+ E ++ + ++EEE
Sbjct: 380 SRPRSRRDSEDEDTERDDSDSDDEEETPA 408
>gnl|CDD|219922 pfam08595, RXT2_N, RXT2-like, N-terminal. The family represents
the N-terminal region of RXT2-like proteins. In S.
cerevisiae, RXT2 has been demonstrated to be involved in
conjugation with cellular fusion (mating) and invasive
growth. A high throughput localisation study has
localised RXT2 to the nucleus.
Length = 141
Score = 26.2 bits (58), Expect = 4.4
Identities = 6/24 (25%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+ ++++E++E++EE + E+++E
Sbjct: 51 GGDIDDDDEDDEDDEEADAEDDDE 74
Score = 25.8 bits (57), Expect = 4.8
Identities = 6/25 (24%), Positives = 19/25 (76%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
+E+ + ++++E++E++EE + E+
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDD 72
Score = 25.8 bits (57), Expect = 5.3
Identities = 5/24 (20%), Positives = 19/24 (79%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+ + ++++E++E++EE + E+++
Sbjct: 50 DGGDIDDDDEDDEDDEEADAEDDD 73
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 26.4 bits (58), Expect = 4.4
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
+E+EE+ ++++ E E+EE+ E E
Sbjct: 209 SEDEEDGDDDQPTENEQEEQGEGEG 233
Score = 25.7 bits (56), Expect = 9.4
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S +EE+ ++++ E E+EE+ E E E
Sbjct: 209 SEDEEDGDDDQPTENEQEEQGEGEGE 234
>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated.
Length = 382
Score = 26.4 bits (59), Expect = 4.4
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
L EEEEEEE EEEE + E
Sbjct: 223 LLGEEEEEEEEVEEEEAQASPAAEPATA 250
Score = 26.0 bits (58), Expect = 5.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEV 115
EEEEEE EEEE + E +
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQA 252
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 26.3 bits (58), Expect = 4.5
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S E E + +EE+ ++EE E++++E+
Sbjct: 395 SEEAEAKAKEEKLKQEENEKKQKEQA 420
Score = 25.5 bits (56), Expect = 8.7
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
T+ EE E + +EE+ ++EE E+++
Sbjct: 392 TDASEEAEAKAKEEKLKQEENEKKQ 416
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 26.5 bits (58), Expect = 4.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 94 EEEEEEEEEEEEEEEEEEEEEVFSQCTH 121
E EE+E EEE+EEEE +EV ++
Sbjct: 768 AESSEEDESSEEEKEEEENKEVSAKRAK 795
>gnl|CDD|221586 pfam12457, TIP_N, Tuftelin interacting protein N terminal. This
domain family is found in eukaryotes, and is typically
between 99 and 114 amino acids in length. The family is
found in association with pfam08697, pfam01585. There
are two completely conserved residues (G and F) that may
be functionally important. TIP is involved in enamel
assembly by interacting with one of the major proteins
responsible for biomineralisation of enamel - tuftelin.
Length = 106
Score = 25.8 bits (57), Expect = 4.5
Identities = 9/24 (37%), Positives = 21/24 (87%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+E EE+++E+E E+++E +E+++E
Sbjct: 81 KEPEEDDKEDESEDDDESDEDDDE 104
Score = 25.8 bits (57), Expect = 4.7
Identities = 9/26 (34%), Positives = 22/26 (84%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+ E EE+++E+E E+++E +E+++E+
Sbjct: 80 AKEPEEDDKEDESEDDDESDEDDDED 105
Score = 25.4 bits (56), Expect = 6.2
Identities = 8/24 (33%), Positives = 21/24 (87%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EE+++E+E E+++E +E+++E++
Sbjct: 83 PEEDDKEDESEDDDESDEDDDEDD 106
>gnl|CDD|220112 pfam09110, HAND, HAND. The HAND domain adopts a secondary
structure consisting of four alpha helices, three of
which (H2, H3, H4) form an L-like configuration. Helix
H2 runs antiparallel to helices H3 and H4, packing
closely against helix H4, whilst helix H1 reposes in the
concave surface formed by these three helices and runs
perpendicular to them. The domain confers DNA and
nucleosome binding properties to the protein.
Length = 109
Score = 25.7 bits (57), Expect = 4.5
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 86 YLFSTEEEEEEEEEEEEEEEEEEEEEEEEV 115
Y ++ + +EE+EEE E + + E+E++
Sbjct: 59 YKVPLDDVGDGDEEDEEEREAKRKLEQEKI 88
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 26.1 bits (58), Expect = 4.5
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 81 NHMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEEVFSQC 119
++ Y +E+++ +EE++ +EE+E+ EE + C
Sbjct: 88 TPIYQYFEEEKEKKKAMSKEEKKAIKEEKEKLEEPYGYC 126
>gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional.
Length = 193
Score = 26.0 bits (58), Expect = 4.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S EE++ +E+ EE E E E++EE
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEA 27
Score = 25.7 bits (57), Expect = 6.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQC 119
E+ EE E E E++EE +E E E+ +
Sbjct: 11 EQVSEEIEAEVEQQEEADEAELEDELDEA 39
>gnl|CDD|129474 TIGR00378, cax, calcium/proton exchanger (cax). [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 349
Score = 26.4 bits (58), Expect = 4.6
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 86 YLFSTEEEEEEEEEEEEEEEEEE 108
L+ +E E +E E E
Sbjct: 177 ALYEQQEAETDEVMETIERNPHH 199
>gnl|CDD|218652 pfam05602, CLPTM1, Cleft lip and palate transmembrane protein 1
(CLPTM1). This family consists of several eukaryotic
cleft lip and palate transmembrane protein 1 sequences.
Cleft lip with or without cleft palate is a common birth
defect that is genetically complex. The nonsyndromic
forms have been studied genetically using linkage and
candidate-gene association studies with only partial
success in defining the loci responsible for orofacial
clefting. CLPTM1 encodes a transmembrane protein and has
strong homology to two Caenorhabditis elegans genes,
suggesting that CLPTM1 may belong to a new gene family.
This family also contains the human cisplatin resistance
related protein CRR9p which is associated with
CDDP-induced apoptosis.
Length = 437
Score = 26.5 bits (59), Expect = 4.8
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 85 FYLFSTEEEEEEEEEEEEEEEEE 107
L + E+EE EEE+ ++
Sbjct: 156 KNLLGGKSEKEEPEEEKTPAPDK 178
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 25.9 bits (57), Expect = 4.9
Identities = 10/25 (40%), Positives = 10/25 (40%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
EE EEEE EE EE
Sbjct: 154 EAAAVAAEEAAAAEEEEAEEAPAEE 178
Score = 25.5 bits (56), Expect = 8.6
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
EE EEEE EE EE EE
Sbjct: 159 AAEEAAAAEEEEAEEAPAEEAPAEE 183
>gnl|CDD|237084 PRK12378, PRK12378, hypothetical protein; Provisional.
Length = 235
Score = 25.9 bits (58), Expect = 5.1
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 83 MFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEEV 115
+F + E+E E + + + E+ EEEE +
Sbjct: 136 VFVFEGDDEDELLEALIDADVDVEDVEEEEGTI 168
Score = 25.5 bits (57), Expect = 7.2
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 82 HMF-----FYLFSTEEEEEEEEEEEEEEEEEEEEEEEEVF 116
MF F +E+E E + + + E+ EEEE
Sbjct: 129 FMFDHKGVFVFEGDDEDELLEALIDADVDVEDVEEEEGTI 168
>gnl|CDD|177755 PLN00152, PLN00152, DNA-directed RNA polymerase; Provisional.
Length = 130
Score = 25.6 bits (56), Expect = 5.2
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQCTH 121
E+E E E EE EE+ E +EV
Sbjct: 10 EDEPSEPEIEEGAEEDSESNNNDEVKGSIGE 40
>gnl|CDD|205219 pfam13038, DUF3899, Domain of unknown function (DUF3899). Putative
Tryptophanyl-tRNA synthetase.
Length = 92
Score = 25.4 bits (56), Expect = 5.3
Identities = 7/35 (20%), Positives = 20/35 (57%)
Query: 84 FFYLFSTEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
F ++E++ EE+E +++ ++++ VF+
Sbjct: 37 LFRQLVEKKEKDSIEEDEFANDKKVKKKKYSVFTW 71
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 26.2 bits (58), Expect = 5.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
+ +EEE E+E EEEE E V
Sbjct: 395 SKVKEEERPREKEGTEEEERREITV 419
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 26.2 bits (58), Expect = 5.5
Identities = 7/38 (18%), Positives = 20/38 (52%), Gaps = 9/38 (23%)
Query: 88 FSTEEEEEEEEEEEEEEEEEE---------EEEEEEVF 116
S +E + +++++E+ E + +E+ E++F
Sbjct: 248 DSDDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLF 285
>gnl|CDD|215275 PLN02498, PLN02498, omega-3 fatty acid desaturase.
Length = 450
Score = 26.3 bits (58), Expect = 5.5
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 73 CVRIKPWANHMFFYLFSTEEEEEEEEEEEEEEEEEEEEE 111
C R + WA ++ L EEEE+EE E+EE E
Sbjct: 55 CSRERNWALNVSAPLTVPSGEEEEDEEGVNGVGEDEEGE 93
>gnl|CDD|182633 PRK10669, PRK10669, putative cation:proton antiport protein;
Provisional.
Length = 558
Score = 26.2 bits (58), Expect = 5.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 86 YLFSTEEEEEEEEEEEEEEEEE 107
YL TE EE+ EE EEE++
Sbjct: 390 YLAKTETLEEQTLEEAIEEEKQ 411
>gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed.
Length = 1176
Score = 26.0 bits (58), Expect = 6.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 85 FYLFSTEEEEEEEEEEEEEEEEEEEEEEEEV 115
+E+EE E+ E E+ EE+EEE+
Sbjct: 849 LEGEFSEKEEAEKFYNNLIEVEKVEEKEEEL 879
Score = 26.0 bits (58), Expect = 7.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 84 FFYLFSTEEEEEEEEEEEEEEEEEEEEEEE 113
FS +EE E+ E E+ EE+EEE
Sbjct: 849 LEGEFSEKEEAEKFYNNLIEVEKVEEKEEE 878
>gnl|CDD|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family.
Prothymosin alpha and parathymosin are two ubiquitous
small acidic nuclear proteins that are thought to be
involved in cell cycle progression, proliferation, and
cell differentiation.
Length = 106
Score = 25.3 bits (55), Expect = 6.1
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEV 115
EE +E++EEEE E EEEE EEEEE
Sbjct: 55 EEVDEDDEEEEGEGEEEEGEEEEET 79
Score = 25.3 bits (55), Expect = 7.0
Identities = 17/24 (70%), Positives = 20/24 (83%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEE +E++EEEE E EEEE EEEE
Sbjct: 54 EEEVDEDDEEEEGEGEEEEGEEEE 77
Score = 24.9 bits (54), Expect = 8.6
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEE 114
+E++EEEE E EEEE EEEEE E
Sbjct: 57 VDEDDEEEEGEGEEEEGEEEEETEG 81
Score = 24.9 bits (54), Expect = 9.9
Identities = 17/24 (70%), Positives = 20/24 (83%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
EEEE +E++EEEE E EEEE EEE
Sbjct: 53 EEEEVDEDDEEEEGEGEEEEGEEE 76
>gnl|CDD|220777 pfam10486, PI3K_1B_p101, Phosphoinositide 3-kinase gamma adapter
protein p101 subunit. Class I PI3Ks are dual-specific
lipid and protein kinases involved in numerous
intracellular signaling pathways. Class IB PI3K,
p110gamma, is mainly activated by seven-transmembrane
G-protein-coupled receptors (GPCRs), through its
regulatory subunit p101 and G-protein beta-gamma
subunits.
Length = 856
Score = 26.1 bits (57), Expect = 6.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFS 117
E+EE EEEEEE++E + E + + S
Sbjct: 314 EDEEVEEEEEEDDETDGLSPERDSLLS 340
>gnl|CDD|218303 pfam04874, Mak16, Mak16 protein C-terminal region. The precise
function of this eukaryotic protein family is unknown.
The yeast orthologues have been implicated in cell cycle
progression and biogenesis of 60S ribosomal subunits.
The Schistosoma mansoni Mak16 has been shown to target
protein transport to the nucleolus.
Length = 97
Score = 25.2 bits (55), Expect = 6.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 74 VRIKPWANHMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEEV 115
+ + + +EEEEEEEEEE+E E E ++E
Sbjct: 46 ISQSAFKKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEE 87
Score = 24.8 bits (54), Expect = 7.6
Identities = 18/26 (69%), Positives = 20/26 (76%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEVFS 117
EE EE +EEEEEEEEEE+E E E S
Sbjct: 58 EESEENDEEEEEEEEEEDEGEIEYVS 83
Score = 24.8 bits (54), Expect = 9.3
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFS 117
E EE EE +EEEEEEEEEE+E E +
Sbjct: 56 EAEESEENDEEEEEEEEEEDEGEIEYV 82
>gnl|CDD|241384 cd13230, PH1_SSRP1-like, Structure Specific Recognition protein 1
(SSRP1) Pleckstrin homology (PH) domain, repeat 1.
SSRP1 is a component of FACT (facilitator of chromatin
transcription), an essential chromatin reorganizing
factor. In yeast FACT (yFACT) is composed of three
proteins: Spt16/Cdc68, Pob3, and Nhp6. In metazoans the
Pob3 and Nhp6 orthologs are fused to form SSRP1/T160 in
human and mouse, respectively. The middle domain of the
Pob3 subunit (Pob3-M) has an unusual double pleckstrin
homology (PH) architecture. yFACT interacts in a
physiologically important way with the central
single-strand DNA binding factor RPA to promote a step
in DNA Replication. Coordinated function by yFACT and
RPA is important during nucleosome deposition. These
results support the model that the FACT family has an
essential role in constructing nucleosomes during DNA
replication, and suggest that RPA contributes to this
process. Members of this cd are composed of the first
PH-like repeat. PH domains have diverse functions, but
in general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to
the plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 137
Score = 25.6 bits (57), Expect = 6.2
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 9/41 (21%)
Query: 87 LFSTEEEEEEE---EEEEEEEEEEEEEEEE------EVFSQ 118
F +EE E E EEE EE+ + + E+E EV S+
Sbjct: 83 QFDKDEEIELELNLTEEELEEKYKGKLEKEYEGPLYEVVSR 123
>gnl|CDD|238895 cd01914, HCP, Hybrid cluster protein (HCP), formerly known as
prismane, is thought to play a role in nitrogen
metabolism but its specific function is unknown. HCP has
three structural domains, an N-terminal alpha-helical
domain, and two similar domains comprising a central
beta-sheet flanked by alpha-helices. HCP contains two
iron-sulfur clusters, one of which is a [Fe4-S4] cubane
cluster similar to that of carbon monoxide dehydrogenase
(CODH). The second cluster, referred to as the hybrid
cluster, is a hybrid [Fe4-S2-O2] center located at the
interface of the three domains. Although the hybrid
cluster is buried within the protein, it is accessible
through a large hydrophobic cavity.
Length = 423
Score = 26.1 bits (58), Expect = 6.4
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 30 QNAEAVDYQTVILAFINCLIISTPQLNDRI 59
Q E + IL NC+I DRI
Sbjct: 176 QQKEFARFPGPILMTTNCIIPPRESYKDRI 205
>gnl|CDD|226907 COG4530, COG4530, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 129
Score = 25.6 bits (56), Expect = 6.4
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVFS 117
+T + EEEEEE +E + E EE EV S
Sbjct: 44 TTPDAAAEEEEEEVVKEVDAENEEVEVVS 72
>gnl|CDD|236153 PRK08116, PRK08116, hypothetical protein; Validated.
Length = 268
Score = 25.8 bits (57), Expect = 6.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEVFSQC 119
E E EE +E EEE E++ E + S
Sbjct: 46 EREAEEAKEREEENREKQRRIERLKSNS 73
>gnl|CDD|236152 PRK08115, PRK08115, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 858
Score = 26.0 bits (57), Expect = 6.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEV 115
EE + +E+ EE EEEE ++ V
Sbjct: 780 KAEENDLDEQLLLLPEELEEEETKKPV 806
>gnl|CDD|151902 pfam11463, R-HINP1I, R.HinP1I restriction endonuclease. Hinp1I is
a type II restriction endonuclease, recognising and
cleaving a palindromic tetranucleotide sequence (G/CGC)
resulting in 2 nt 5' overhanging ends. HINP1I has a
conserved catalytic core domain containing an active
site motif SDC18QXK and a DNA-binding domain.
Length = 205
Score = 25.6 bits (56), Expect = 6.7
Identities = 12/39 (30%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 57 DRIRIRNEFIGVTGPTCVRIKPWANHMFFYLFSTEEEEE 95
+ RI F G P K MF FS EE+
Sbjct: 71 NIYRILRYFTGELPPYHSNTKD-KRRMFMTEFSQEEQNI 108
>gnl|CDD|213394 cd12151, F1-ATPase_gamma, mitochondrial ATP synthase gamma subunit.
The F-ATPase is found in bacterial plasma membranes,
mitochondrial inner membranes and in chloroplast
thylakoid membranes. It has also been found in the
archaea Methanosarcina barkeri. It uses a proton
gradient to drive ATP synthesis and hydrolyzes ATP to
build the proton gradient. The extrinisic membrane
domain of F-ATPases is composed of alpha, beta, gamma,
delta, and epsilon (not present in bacteria) subunits
with a stoichiometry of 3:3:1:1:1. Alpha and beta
subunit form the globular catalytic moiety, a hexameric
ring of alternating subunits. Gamma, delta and epsilon
subunits form a stalk, connecting F1 to F0, the integral
membrane proton translocating domain.
Length = 282
Score = 25.6 bits (57), Expect = 6.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEEVFS 117
L ++EEEEEE E + E + EEV
Sbjct: 185 LLPLDKEEEEEESEGSRSDYIFEPDPEEVLD 215
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 26.0 bits (57), Expect = 6.9
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEV 115
EEEE EE E ++EEE+EEV
Sbjct: 319 VEEEESEEPEPPPLPKKEEEKEEV 342
Score = 25.6 bits (56), Expect = 9.5
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVFS 117
S EEEE EE E ++EEE+EE S
Sbjct: 317 SPVEEEESEEPEPPPLPKKEEEKEEVTVS 345
>gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed.
Length = 424
Score = 25.8 bits (58), Expect = 6.9
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEEV 115
L T E EEEE EEE + EEEE++
Sbjct: 326 LEETPEFPLEEEEVEEEVYYKFEEEEKDF 354
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 25.7 bits (56), Expect = 7.1
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
LF+ E E+ ++E E++EE++ EEE
Sbjct: 140 LFNESESSLEDLSDDETEDDEEKKMEEE 167
Score = 25.7 bits (56), Expect = 8.9
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
E E E+ ++E E++EE++ EE +
Sbjct: 141 FNESESSLEDLSDDETEDDEEKKMEEEEAG 170
>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral
inhibitor of apoptosis (IAP)-associated factor (VIAF)
subfamily; VIAF is a Phd-like protein that functions in
caspase activation during apoptosis. It was identified
as an IAP binding protein through a screen of a human
B-cell library using a prototype IAP. VIAF lacks a
consensus IAP binding motif and while it does not
function as an IAP antagonist, it still plays a
regulatory role in the complete activation of caspases.
VIAF itself is a substrate for IAP-mediated
ubiquitination, suggesting that it may be a target of
IAPs in the prevention of cell death. The similarity of
VIAF to Phd points to a potential role distinct from
apoptosis regulation. Phd functions as a cytosolic
regulator of G protein by specifically binding to G
protein betagamma (Gbg)-subunits. The C-terminal domain
of Phd adopts a thioredoxin fold, but it does not
contain a CXXC motif. Phd interacts with G protein beta
mostly through the N-terminal helical domain.
Length = 192
Score = 25.7 bits (57), Expect = 7.3
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
E E++ +E +EE +EEE++ +
Sbjct: 36 HENALEKKLLDELDEELDEEEDDRFLEE 63
>gnl|CDD|218598 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 3
subunit 8 N-terminus. The largest of the mammalian
translation initiation factors, eIF3, consists of at
least eight subunits ranging in mass from 35 to 170 kDa.
eIF3 binds to the 40 S ribosome in an early step of
translation initiation and promotes the binding of
methionyl-tRNAi and mRNA.
Length = 593
Score = 25.9 bits (57), Expect = 7.3
Identities = 12/39 (30%), Positives = 26/39 (66%)
Query: 76 IKPWANHMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
K + + + Y E E+EEEEE+E+++++ ++E+E+
Sbjct: 121 NKQFEDDITRYREDPESEDEEEEEDEDDDDDGSDDEDED 159
>gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase
subunit beta/2-polyprenylphenol hydroxylase;
Provisional.
Length = 944
Score = 25.9 bits (57), Expect = 7.4
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 3 SQIGQSRRPQKTLKNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIR 62
+++ + + + TL++ R L +ELQ +EAV LA + +++ P +R
Sbjct: 10 NEVLRYEQARSTLESSRSEL----EELQQSEAVGVFQKQLALLQKRLLNDPA-----SLR 60
Query: 63 NEFI 66
N FI
Sbjct: 61 NMFI 64
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 25.4 bits (56), Expect = 7.4
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEEV 115
+ + EEEE EEEE EEE E EEE++E+
Sbjct: 18 EAEKSEEEEAEEEEPEEENELEEEQQEI 45
>gnl|CDD|235548 PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated.
Length = 325
Score = 25.7 bits (57), Expect = 7.5
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 85 FYLFSTEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
E +E+ EEE + + EEE+ SQ
Sbjct: 12 ADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQ 45
Score = 25.7 bits (57), Expect = 8.3
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
+E+ EEE + + EEE + +Q
Sbjct: 23 DEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 25.3 bits (56), Expect = 9.9
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEE 113
+F + EEE + + EEE +
Sbjct: 21 VFDEKALVEEEPSDNDLAEEELLSQGA 47
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 90 amino acids in length.
There are two completely conserved L residues that may
be functionally important.
Length = 70
Score = 24.6 bits (54), Expect = 7.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+ EEE+ EEEEE + EE +E E+
Sbjct: 30 KAEEEKREEEEEARKREERKEREK 53
Score = 24.6 bits (54), Expect = 7.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEVFS 117
EEE+ EEEEE + EE +E E+ + F
Sbjct: 31 AEEEKREEEEEARKREERKEREKNKSFE 58
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 25.3 bits (56), Expect = 7.8
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 98 EEEEEEEEEEEEEEEEEVFSQ 118
++++EEE EEEE ++++
Sbjct: 147 SDDDDEEESEEEESDDDLLRL 167
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 25.4 bits (56), Expect = 7.8
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEVFS 117
EEE ++EE+ E E+ E+ E++E E F
Sbjct: 79 LEEENDDEEDAETEDTEDVEDDEWEGFP 106
>gnl|CDD|184886 PRK14892, PRK14892, putative transcription elongation factor Elf1;
Provisional.
Length = 99
Score = 24.6 bits (54), Expect = 9.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 91 EEEEEEEEEEEEEEEEEEEEE 111
E +E + EE EEE E E E E
Sbjct: 79 EIKERKNEETEEENEIEGESE 99
Score = 24.6 bits (54), Expect = 9.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 92 EEEEEEEEEEEEEEEEEEEEE 112
E +E + EE EEE E E E E
Sbjct: 79 EIKERKNEETEEENEIEGESE 99
Score = 24.6 bits (54), Expect = 9.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 93 EEEEEEEEEEEEEEEEEEEEE 113
E +E + EE EEE E E E E
Sbjct: 79 EIKERKNEETEEENEIEGESE 99
Score = 24.6 bits (54), Expect = 9.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 94 EEEEEEEEEEEEEEEEEEEEE 114
E +E + EE EEE E E E E
Sbjct: 79 EIKERKNEETEEENEIEGESE 99
Score = 24.6 bits (54), Expect = 9.3
Identities = 9/20 (45%), Positives = 9/20 (45%)
Query: 86 YLFSTEEEEEEEEEEEEEEE 105
EE EEE E E E E
Sbjct: 80 IKERKNEETEEENEIEGESE 99
>gnl|CDD|222927 PHA02774, PHA02774, E1; Provisional.
Length = 613
Score = 25.6 bits (57), Expect = 9.2
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEEV 115
LF ++ EEE + EEE E
Sbjct: 111 LFEEQDSGLGNSLEEESTDVVEEEGVESS 139
>gnl|CDD|224035 COG1110, COG1110, Reverse gyrase [DNA replication, recombination,
and repair].
Length = 1187
Score = 25.4 bits (56), Expect = 9.4
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 82 HMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEE 113
+ L E+ E EE E E E E+
Sbjct: 240 YELIKLRRKLYGEKRAERVREELREVEREREK 271
>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional.
Length = 647
Score = 25.3 bits (56), Expect = 9.7
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 87 LFSTEEEE--EEEEEEEEEEEEEEEEEEEEVFSQCT 120
LF EE ++E+E +EEE + SQ T
Sbjct: 104 LFCDEELSSSDDEDEPPPPSPPPSQEEESQSSSQAT 139
>gnl|CDD|218889 pfam06088, TLP-20, Nucleopolyhedrovirus telokin-like protein-20
(TLP20). This family consists of several
Nucleopolyhedrovirus telokin-like protein-20 (TLP20)
sequences. The function of this family is unknown but
TLP20 is known to shares some antigenic similarities to
the smooth muscle protein telokin although the amino
acid sequence shows no homologies to telokin.
Length = 162
Score = 25.0 bits (55), Expect = 9.7
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 75 RIKPWANHMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+I W + F E+E +E+EE+ + E
Sbjct: 103 KIVYWNSKKFVSAPVPHHSSEDENDEDEEDNADRAGIESG 142
>gnl|CDD|214923 smart00937, PCRF, This domain is found in peptide chain release
factors.
Length = 116
Score = 24.7 bits (55), Expect = 9.8
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEEV 115
L EE++E E EEE EE E E EEE+
Sbjct: 2 LLEEEEDDEMRELAEEELEELEAELEEEL 30
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional.
Length = 445
Score = 25.5 bits (56), Expect = 9.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 87 LFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
L S ++ ++ EEE E +EEEE E
Sbjct: 418 LVSEYQQYQDATVEEEGEFDEEEEAYEI 445
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.131 0.364
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,712,248
Number of extensions: 640093
Number of successful extensions: 15528
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9439
Number of HSP's successfully gapped: 2666
Length of query: 123
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 38
Effective length of database: 7,167,512
Effective search space: 272365456
Effective search space used: 272365456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.0 bits)