RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16509
(123 letters)
>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1
(Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 343
Score = 53.8 bits (129), Expect = 3e-10
Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 16 KNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGVTGPTCVR 75
+E R + ++D L++ ++ + L IN LI +L+ R+ IR+E
Sbjct: 148 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSEL---------- 197
Query: 76 IKPWANHMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEEVFSQC 119
+ L E E E+ + + +E+ +E+
Sbjct: 198 ---MRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGR 238
>d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 413
Score = 28.9 bits (64), Expect = 0.12
Identities = 14/109 (12%), Positives = 31/109 (28%), Gaps = 22/109 (20%)
Query: 10 RPQKTLKNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGVT 69
RP + ++Y L+ V EL++ L + + +G
Sbjct: 62 RPDGSPMPDKYSLQPVAAELKS----------------------ALGKAVLFLKDCVGPA 99
Query: 70 GPTCVRIKPWANHMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
+ + EEE + ++ + E + + F
Sbjct: 100 VEKACADPAAGSVILLENLRFHVEEEGKGKDASGNKAAGEPAKIKAFRA 148
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 28.4 bits (63), Expect = 0.21
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
E+ + +E E E E +EE +Q
Sbjct: 77 KPEQIAKGQEIVESLNETELLVDEEEKAQ 105
Score = 25.7 bits (56), Expect = 1.7
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEV 115
E+ + E+ + +E E E E V
Sbjct: 73 QEQPKPEQIAKGQEIVESLNETELLV 98
Score = 24.2 bits (52), Expect = 5.1
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEVF 116
+E+ + E+ + +E E E E+
Sbjct: 73 QEQPKPEQIAKGQEIVESLNETELL 97
Score = 24.2 bits (52), Expect = 5.6
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+E E E E +EEE+ + +
Sbjct: 84 GQEIVESLNETELLVDEEEKAQND 107
Score = 24.2 bits (52), Expect = 6.1
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+ +E E E E +EEE+ +
Sbjct: 83 KGQEIVESLNETELLVDEEEKAQN 106
Score = 24.2 bits (52), Expect = 6.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 84 FFYLFSTEEEEEEEEEEEEEEEEEEEEEEE 113
FF F + + E+++EE EE+ EE +
Sbjct: 243 FFNFFDPPKIQNEDQDEELEEDLEERLALD 272
Score = 23.8 bits (51), Expect = 7.0
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEE 114
+E E E E +EEE+ + +
Sbjct: 85 QEIVESLNETELLVDEEEKAQNDS 108
Score = 23.4 bits (50), Expect = 8.9
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQCTH 121
E E E +EEE+ + + EEE
Sbjct: 88 VESLNETELLVDEEEKAQNDSEEEQVKGIPS 118
>d1gsma2 b.1.1.4 (A:91-206) Mucosal addressin cell adhesion
molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 116
Score = 27.2 bits (60), Expect = 0.37
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEVFS 117
E + E +EEEEE + +E+ +F
Sbjct: 47 EGAQALGPEVQEEEEEPQGDEDVLFR 72
Score = 26.1 bits (57), Expect = 0.81
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 83 MFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEEVFSQCT 120
+ E E + E +EEEEE + +E+V + T
Sbjct: 37 FSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVT 74
Score = 24.5 bits (53), Expect = 2.7
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 81 NHMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
N + F L +E E + E +EEEEE + +
Sbjct: 33 NALSFSLLVGGQELEGAQALGPEVQEEEEEPQGD 66
>d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 417
Score = 27.4 bits (60), Expect = 0.56
Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 23/109 (21%)
Query: 10 RPQKTLKNERYRLKVVVDELQNAEAVDYQTVILAFINCLIISTPQLNDRIRIRNEFIGVT 69
RP L+NE+Y LK V + L+ L + + N+ +G
Sbjct: 68 RP-DGLRNEKYTLKPVAETLKG----------------------LLGEEVLFLNDCVGKE 104
Query: 70 GPTCVRIKPWANHMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
+ + + EEE + + + + +E+ E F
Sbjct: 105 VEDKINAAKENSVILLENLRFHIEEEGKGVDANGNKVKANKEDVEKFQN 153
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 26.6 bits (59), Expect = 0.83
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 82 HMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEEVFSQCTH 121
MF Y +E++++ +E+++ E E+ EE + C
Sbjct: 96 KMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCEL 135
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 25.8 bits (56), Expect = 1.4
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 81 NHMFFYLFSTEEEEEEEEEEEEEEEEEEEEE 111
+ +E E+ ++ EEEE + E E+
Sbjct: 220 GKTVIRVLKQKEVEQLIKKHEEEEAKAEREK 250
Score = 25.0 bits (54), Expect = 3.0
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEE 114
+++E E+ ++ EEEE + E E+
Sbjct: 224 IRVLKQKEVEQLIKKHEEEEAKAEREK 250
>d1j3ba2 c.109.1.1 (A:2-211) Phosphoenolpyruvate (PEP) carboxykinase
(ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus
[TaxId: 274]}
Length = 210
Score = 25.6 bits (56), Expect = 1.5
Identities = 11/70 (15%), Positives = 18/70 (25%), Gaps = 6/70 (8%)
Query: 43 AFINCLIISTPQLNDRIRIRNEFIGVTGPTC---VRI---KPWANHMFFYLFSTEEEEEE 96
AF L++R + VR+ PW +F
Sbjct: 81 AFEALYQRVVQYLSERDLYVQDLYAGADRRYRLAVRVVTESPWHALFARNMFILPRRFGN 140
Query: 97 EEEEEEEEEE 106
++E E
Sbjct: 141 DDEVEAFVPG 150
>d1p32a_ d.25.1.1 (A:) Acidic mitochondrial matrix protein p32
{Human (Homo sapiens) [TaxId: 9606]}
Length = 209
Score = 25.3 bits (55), Expect = 2.0
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 84 FFYLFSTEEEEEEEEEEEEEEEEEEEEEEEE 114
F + ++ + EEE + ++ EE+E E
Sbjct: 59 TFNINNSIPPTFDGEEEPSQGQKVEEQEPEL 89
Score = 24.1 bits (52), Expect = 5.3
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 92 EEEEEEEEEEEEEEEEEEEEEEEVFSQC 119
+ EEE + ++ EE+E E+ S
Sbjct: 66 IPPTFDGEEEPSQGQKVEEQEPELTSTP 93
Score = 24.1 bits (52), Expect = 5.8
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVFSQCT 120
S + EEE + ++ EE+E E
Sbjct: 65 SIPPTFDGEEEPSQGQKVEEQEPELTSTPNFV 96
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 323
Score = 25.3 bits (54), Expect = 2.3
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 91 EEEEEEEEEEEEEEEE 106
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 25.3 bits (54), Expect = 2.3
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 92 EEEEEEEEEEEEEEEE 107
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 25.3 bits (54), Expect = 2.3
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 93 EEEEEEEEEEEEEEEE 108
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 25.3 bits (54), Expect = 2.3
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 94 EEEEEEEEEEEEEEEE 109
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 25.3 bits (54), Expect = 2.3
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 95 EEEEEEEEEEEEEEEE 110
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 25.3 bits (54), Expect = 2.3
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 96 EEEEEEEEEEEEEEEE 111
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 25.3 bits (54), Expect = 2.3
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 97 EEEEEEEEEEEEEEEE 112
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 25.3 bits (54), Expect = 2.3
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 98 EEEEEEEEEEEEEEEE 113
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 25.3 bits (54), Expect = 2.3
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 99 EEEEEEEEEEEEEEEE 114
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 25.1 bits (55), Expect = 2.7
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 82 HMFFYLFSTEEEEEEEEEEEEEEEEEEEEEEEEVFSQC 119
M Y + E ++ +EE+ + +EE E+ + + C
Sbjct: 104 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFC 141
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 24.0 bits (52), Expect = 3.9
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
+ + EE+ + +E E EEE +E
Sbjct: 67 DATKVQREEQRKIDEAEPLTEEEIQE 92
Score = 23.6 bits (51), Expect = 4.6
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S + + EE+ + +E E EEE +
Sbjct: 66 SDATKVQREEQRKIDEAEPLTEEEIQ 91
>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 201
Score = 24.3 bits (53), Expect = 4.6
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 91 EEEEEEEEEEEEEEEEEEEEEEEEVFSQ 118
+ +E EEEE ++ + EV+
Sbjct: 126 KAMKEYEEEERKKRLGPGGLDPVEVYES 153
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 24.0 bits (52), Expect = 4.8
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEE 114
S E+ + ++ ++ EE+E ++ E
Sbjct: 2 SDNEDNFDGDDFDDVEEDEGLDDLEN 27
Score = 23.6 bits (51), Expect = 5.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 88 FSTEEEEEEEEEEEEEEEEEEEEEEEE 114
F ++ ++ EE+E ++ E EEE +E
Sbjct: 8 FDGDDFDDVEEDEGLDDLENAEEEGQE 34
>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia
carotovora [TaxId: 554]}
Length = 225
Score = 24.5 bits (52), Expect = 4.8
Identities = 6/46 (13%), Positives = 13/46 (28%)
Query: 47 CLIISTPQLNDRIRIRNEFIGVTGPTCVRIKPWANHMFFYLFSTEE 92
L + P N R +G+ + H ++ +
Sbjct: 114 RLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDT 159
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 24.2 bits (52), Expect = 5.4
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 85 FYLFSTEEEEEEEEEEEEEEEEEEEEEE 112
+ + EE E+ E E+E+EE E++++
Sbjct: 216 LKILNPEEIEKYVAEIEKEKEENEKKKQ 243
>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 113
Score = 23.7 bits (51), Expect = 5.8
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 89 STEEEEEEEEEEEEEEEEEEEEEEEEVF 116
S EE ++E E + EE+ +
Sbjct: 6 SGNEELRAQQEAEAAQRLSEEKAQASAI 33
>d1b34b_ b.38.1.1 (B:) D2 core SNRNP protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 93
Score = 23.3 bits (50), Expect = 6.7
Identities = 10/69 (14%), Positives = 28/69 (40%), Gaps = 11/69 (15%)
Query: 54 QLNDRIRIR----NEFIGVTGPTCVRIKPWANHMFFYLFSTEEEEEEEEEEEEEEEEEEE 109
+ N ++ I + +G R+K + H L + +E E + + +++ +
Sbjct: 12 KNNTQVLINCRNNKKLLG-------RVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKP 64
Query: 110 EEEEEVFSQ 118
++ S+
Sbjct: 65 VNKDRYISK 73
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP
module {Pseudomonas putida [TaxId: 303]}
Length = 407
Score = 24.1 bits (51), Expect = 7.0
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 90 TEEEEEEEEEEEEEEEEEEEEEEEEV 115
+EEE + E E ++E E+
Sbjct: 349 SEEEHQATTAEFEAAVIAAQKEAEQY 374
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId:
10665]}
Length = 282
Score = 23.3 bits (49), Expect = 9.7
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 24 VVVDELQNAEAVDYQTVILAFINC 47
++ DE A ++I NC
Sbjct: 229 MMNDECHLATGKSISSIISGLNNC 252
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.131 0.364
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 492,609
Number of extensions: 23847
Number of successful extensions: 545
Number of sequences better than 10.0: 1
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 169
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.1 bits)