BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1651
         (141 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1CXZ|B Chain B, Crystal Structure Of Human Rhoa Complexed With The
           Effector Domain Of The Protein Kinase PknPRK1
          Length = 86

 Score = 31.2 bits (69), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 71  GAEKLREVARD-RKSLSDVATIVKKSNSKLSELHNELQELESQI 113
           GAE LR    D  +SL  V  +++ S+ +L  LH +LQEL + +
Sbjct: 43  GAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQELHAHV 86


>pdb|1VKW|A Chain A, Crystal Structure Of A Putative Nitroreductase (tm1586)
           From Thermotoga Maritima Msb8 At 2.00 A Resolution
          Length = 218

 Score = 27.3 bits (59), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 93  KKSNSKLSELHNELQELESQIIMTQGQTVTSPTAANHEHGK 133
           +K     S L N+L+EL  +I+     T+ +P+A N +  K
Sbjct: 125 RKRRPITSFLENDLEELPPEIVKIVEXTILAPSALNRQPWK 165


>pdb|2RFT|B Chain B, Crystal Structure Of Influenza B Virus Hemagglutinin In
           Complex With Lsta Receptor Analog
 pdb|2RFU|B Chain B, Crystal Structure Of Influenza B Virus Hemagglutinin In
           Complex With Lstc Receptor Analog
          Length = 176

 Score = 26.2 bits (56), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 13/52 (25%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 73  EKLREVARDRKSLSDVATI-VKKSNSKLSELHNELQELESQIIMTQGQTVTS 123
           E + ++ ++  SLS++    +++ +  + ELHNE+ EL+ ++   +  T++S
Sbjct: 43  EAINKITKNLNSLSELEVKNLQRLSGAMDELHNEILELDEKVDDLRADTISS 94


>pdb|3BT6|B Chain B, Crystal Structure Of Influenza B Virus Hemagglutinin
          Length = 169

 Score = 26.2 bits (56), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 13/52 (25%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 73  EKLREVARDRKSLSDVATI-VKKSNSKLSELHNELQELESQIIMTQGQTVTS 123
           E + ++ ++  SLS++    +++ +  + ELHNE+ EL+ ++   +  T++S
Sbjct: 43  EAINKITKNLNSLSELEVKNLQRLSGAMDELHNEILELDEKVDDLRADTISS 94


>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
           Escherichia Coli K-12
          Length = 657

 Score = 25.8 bits (55), Expect = 7.5,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 8   VQNDRYYWISSEGDY 22
           + N  YYWI  +GDY
Sbjct: 282 IDNRSYYWIREDGDY 296


>pdb|4FQK|B Chain B, Influenza BBRISBANE602008 HEMAGGLUTININ FAB CR8059 COMPLEX
 pdb|4FQK|D Chain D, Influenza BBRISBANE602008 HEMAGGLUTININ FAB CR8059 COMPLEX
 pdb|4FQM|B Chain B, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
 pdb|4FQM|D Chain D, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
 pdb|4FQM|F Chain F, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
 pdb|4FQM|H Chain H, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
 pdb|4FQM|J Chain J, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
 pdb|4FQM|L Chain L, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
          Length = 179

 Score = 25.8 bits (55), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 13/52 (25%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 73  EKLREVARDRKSLSDVATI-VKKSNSKLSELHNELQELESQIIMTQGQTVTS 123
           E + ++ ++  SLS++    +++ +  + ELHNE+ EL+ ++   +  T++S
Sbjct: 43  EAINKITKNLNSLSELEVKNLQRLSGAMDELHNEILELDEKVDDLRADTISS 94


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.128    0.356 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,382,138
Number of Sequences: 62578
Number of extensions: 94074
Number of successful extensions: 219
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 9
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 46 (22.3 bits)