Query psy1651
Match_columns 141
No_of_seqs 111 out of 125
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 23:08:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02185 HR1: Hr1 repeat; Int 99.5 5E-14 1.1E-18 95.5 6.9 66 54-119 2-69 (70)
2 cd00089 HR1 Protein kinase C-r 99.4 8.8E-13 1.9E-17 89.8 8.4 67 46-112 2-71 (72)
3 smart00742 Hr1 Rho effector or 99.4 1.5E-12 3.1E-17 86.0 7.0 54 54-107 2-56 (57)
4 PF15456 Uds1: Up-regulated Du 94.8 0.2 4.2E-06 38.3 7.6 65 50-114 33-105 (124)
5 PRK10884 SH3 domain-containing 92.0 1.6 3.5E-05 35.7 9.0 29 86-114 135-163 (206)
6 KOG2220|consensus 85.2 0.11 2.3E-06 49.4 -2.5 81 59-140 38-119 (714)
7 PF08690 GET2: GET complex sub 77.7 2.9 6.3E-05 36.1 3.7 28 52-80 4-33 (302)
8 PF04816 DUF633: Family of unk 69.7 28 0.00061 28.1 7.4 61 6-73 124-185 (205)
9 PF14389 Lzipper-MIP1: Leucine 68.8 31 0.00067 24.6 6.6 63 45-107 7-85 (88)
10 PRK13729 conjugal transfer pil 68.8 70 0.0015 29.9 10.4 77 33-115 53-129 (475)
11 PF07047 OPA3: Optic atrophy 3 68.5 14 0.0003 28.0 5.1 39 73-111 95-133 (134)
12 PF09726 Macoilin: Transmembra 67.2 37 0.00079 32.7 8.6 68 57-127 605-673 (697)
13 PRK11637 AmiB activator; Provi 67.1 34 0.00073 29.9 7.8 31 84-114 90-120 (428)
14 PRK06568 F0F1 ATP synthase sub 66.1 64 0.0014 25.5 8.6 49 27-82 16-64 (154)
15 PF10186 Atg14: UV radiation r 65.9 44 0.00096 26.6 7.7 11 56-66 37-47 (302)
16 KOG4429|consensus 64.6 21 0.00046 32.4 6.1 63 51-113 224-292 (421)
17 PRK08475 F0F1 ATP synthase sub 64.5 64 0.0014 25.1 8.2 69 27-102 34-104 (167)
18 PF07926 TPR_MLP1_2: TPR/MLP1/ 63.4 42 0.00092 25.0 6.8 48 67-114 77-129 (132)
19 PF02403 Seryl_tRNA_N: Seryl-t 63.4 33 0.00072 24.2 5.9 59 45-110 39-101 (108)
20 PF14257 DUF4349: Domain of un 63.2 33 0.00072 27.9 6.7 32 83-114 162-193 (262)
21 PRK14472 F0F1 ATP synthase sub 62.1 71 0.0015 24.6 8.4 38 45-82 41-78 (175)
22 PF09383 NIL: NIL domain; Int 59.1 9.5 0.0002 25.4 2.4 29 10-38 1-29 (76)
23 PRK11637 AmiB activator; Provi 57.8 62 0.0013 28.3 7.8 26 84-109 97-122 (428)
24 PF08317 Spc7: Spc7 kinetochor 56.9 54 0.0012 28.0 7.1 13 51-63 182-194 (325)
25 PRK09174 F0F1 ATP synthase sub 56.6 96 0.0021 25.2 8.2 38 45-82 76-113 (204)
26 TIGR03752 conj_TIGR03752 integ 56.4 1.7E+02 0.0037 27.5 10.6 46 33-78 48-95 (472)
27 PRK13454 F0F1 ATP synthase sub 55.8 93 0.002 24.5 7.8 38 45-82 54-91 (181)
28 smart00787 Spc7 Spc7 kinetocho 55.4 74 0.0016 27.6 7.8 29 85-113 227-255 (312)
29 COG1579 Zn-ribbon protein, pos 54.8 70 0.0015 27.2 7.4 31 77-107 83-113 (239)
30 PF10393 Matrilin_ccoil: Trime 54.4 20 0.00044 23.5 3.3 29 85-113 18-46 (47)
31 PF12999 PRKCSH-like: Glucosid 54.1 85 0.0018 25.6 7.5 58 47-110 115-173 (176)
32 KOG0971|consensus 53.4 52 0.0011 33.8 7.2 43 71-113 445-506 (1243)
33 PF03962 Mnd1: Mnd1 family; I 51.9 1.1E+02 0.0023 24.6 7.7 43 67-109 87-129 (188)
34 KOG1656|consensus 51.6 95 0.0021 26.5 7.6 60 51-110 33-95 (221)
35 PRK06569 F0F1 ATP synthase sub 50.2 1.1E+02 0.0023 24.5 7.3 37 45-81 33-69 (155)
36 PF10186 Atg14: UV radiation r 49.8 1.3E+02 0.0028 23.9 7.8 10 97-106 91-100 (302)
37 PRK13455 F0F1 ATP synthase sub 49.8 1.2E+02 0.0026 23.5 8.7 50 27-82 38-87 (184)
38 KOG0964|consensus 48.8 34 0.00074 35.1 5.2 32 1-32 132-163 (1200)
39 PF03961 DUF342: Protein of un 48.5 86 0.0019 27.8 7.2 71 45-115 330-416 (451)
40 PRK13453 F0F1 ATP synthase sub 48.1 1.3E+02 0.0028 23.3 8.2 38 45-82 41-78 (173)
41 PF10168 Nup88: Nuclear pore c 47.3 1E+02 0.0022 29.8 7.9 27 88-114 637-663 (717)
42 COG4985 ABC-type phosphate tra 46.8 1.4E+02 0.003 26.3 8.0 72 43-114 162-245 (289)
43 PRK06231 F0F1 ATP synthase sub 46.8 1.5E+02 0.0033 23.9 8.2 48 27-81 60-107 (205)
44 PF07798 DUF1640: Protein of u 46.7 1.4E+02 0.003 23.3 7.4 22 86-107 116-137 (177)
45 PRK10884 SH3 domain-containing 44.3 1.1E+02 0.0023 25.2 6.7 30 3-32 54-86 (206)
46 PRK09039 hypothetical protein; 44.3 95 0.0021 27.0 6.7 25 85-109 153-177 (343)
47 PF10212 TTKRSYEDQ: Predicted 43.6 1.5E+02 0.0033 28.1 8.3 62 47-108 418-480 (518)
48 PF10359 Fmp27_WPPW: RNA pol I 43.3 1.7E+02 0.0036 26.5 8.4 75 46-120 162-237 (475)
49 PRK13460 F0F1 ATP synthase sub 42.7 1.6E+02 0.0034 22.8 8.2 37 45-81 39-75 (173)
50 PRK05431 seryl-tRNA synthetase 42.7 94 0.002 27.8 6.6 63 45-114 38-104 (425)
51 KOG2264|consensus 42.2 33 0.00071 33.7 3.8 17 6-22 41-57 (907)
52 PRK09039 hypothetical protein; 41.8 1.4E+02 0.0031 25.9 7.5 11 67-77 141-151 (343)
53 PF04380 BMFP: Membrane fusoge 41.5 1.2E+02 0.0026 21.1 7.8 27 86-112 53-79 (79)
54 PRK07352 F0F1 ATP synthase sub 40.5 1.7E+02 0.0037 22.5 8.4 38 45-82 42-79 (174)
55 PF04728 LPP: Lipoprotein leuc 40.2 44 0.00096 22.8 3.3 29 86-114 6-34 (56)
56 PRK10132 hypothetical protein; 39.5 1.5E+02 0.0033 22.1 6.4 53 45-104 8-66 (108)
57 TIGR01144 ATP_synt_b ATP synth 39.3 1.5E+02 0.0033 21.7 8.3 49 27-82 7-55 (147)
58 KOG3915|consensus 39.1 1.6E+02 0.0034 28.4 7.7 53 51-106 526-579 (641)
59 PF08317 Spc7: Spc7 kinetochor 38.4 2.1E+02 0.0046 24.4 7.9 12 67-78 188-199 (325)
60 PF04977 DivIC: Septum formati 37.5 99 0.0021 20.1 4.6 27 83-109 24-50 (80)
61 PRK07353 F0F1 ATP synthase sub 37.2 1.6E+02 0.0036 21.4 8.4 38 45-82 28-65 (140)
62 PF00038 Filament: Intermediat 36.6 2.4E+02 0.0052 23.1 8.0 30 83-112 209-238 (312)
63 TIGR00606 rad50 rad50. This fa 36.5 94 0.002 31.4 6.2 57 49-107 185-241 (1311)
64 cd00179 SynN Syntaxin N-termin 36.3 1.7E+02 0.0036 21.3 6.6 41 73-113 30-71 (151)
65 PRK14473 F0F1 ATP synthase sub 36.0 1.9E+02 0.0042 21.9 7.8 47 27-80 20-66 (164)
66 PF03082 MAGSP: Male accessory 35.8 29 0.00062 30.0 2.2 48 68-115 151-198 (264)
67 CHL00118 atpG ATP synthase CF0 35.8 1.9E+02 0.0042 21.9 8.2 38 45-82 45-82 (156)
68 COG0711 AtpF F0F1-type ATP syn 35.2 2.1E+02 0.0046 22.1 8.3 63 45-107 29-93 (161)
69 TIGR02231 conserved hypothetic 35.1 2.2E+02 0.0048 25.6 7.8 30 85-114 140-169 (525)
70 PF05266 DUF724: Protein of un 34.9 2.5E+02 0.0053 22.8 8.2 50 57-106 90-147 (190)
71 PRK05759 F0F1 ATP synthase sub 34.8 1.9E+02 0.0041 21.4 8.4 38 45-82 27-64 (156)
72 PF03961 DUF342: Protein of un 34.8 1.7E+02 0.0036 26.0 6.9 71 46-116 326-408 (451)
73 PRK14471 F0F1 ATP synthase sub 33.5 2.1E+02 0.0046 21.6 8.4 37 45-81 31-67 (164)
74 KOG0239|consensus 33.3 2.5E+02 0.0055 27.1 8.2 31 85-115 285-318 (670)
75 KOG3850|consensus 32.8 3.3E+02 0.0072 25.5 8.6 70 41-110 28-118 (455)
76 COG0216 PrfA Protein chain rel 32.5 1.4E+02 0.003 27.3 6.0 44 69-112 62-105 (363)
77 PF09731 Mitofilin: Mitochondr 32.3 3.2E+02 0.0069 24.8 8.4 30 84-113 365-394 (582)
78 PRK14474 F0F1 ATP synthase sub 31.6 3E+02 0.0066 22.8 7.8 48 27-81 17-64 (250)
79 TIGR03321 alt_F1F0_F0_B altern 30.9 3E+02 0.0064 22.5 8.4 49 26-81 16-64 (246)
80 PF06305 DUF1049: Protein of u 30.7 83 0.0018 20.2 3.4 17 92-108 50-66 (68)
81 COG1579 Zn-ribbon protein, pos 30.6 3.4E+02 0.0074 23.1 7.9 62 53-114 103-173 (239)
82 TIGR01000 bacteriocin_acc bact 30.5 2.9E+02 0.0064 24.3 7.7 22 92-113 238-259 (457)
83 PF07374 DUF1492: Protein of u 30.4 2E+02 0.0044 20.4 6.6 57 49-105 25-94 (100)
84 PF05278 PEARLI-4: Arabidopsis 30.3 3.5E+02 0.0075 23.6 7.9 9 47-55 171-179 (269)
85 CHL00019 atpF ATP synthase CF0 30.3 2.6E+02 0.0057 21.7 8.4 38 45-82 47-84 (184)
86 KOG2150|consensus 30.2 1.7E+02 0.0036 28.2 6.4 63 57-119 5-74 (575)
87 PRK10788 periplasmic folding c 29.6 2E+02 0.0044 26.3 6.8 33 51-83 481-516 (623)
88 PRK13428 F0F1 ATP synthase sub 29.5 3.8E+02 0.0082 24.2 8.3 45 26-77 12-56 (445)
89 TIGR03007 pepcterm_ChnLen poly 29.4 85 0.0018 27.5 4.2 17 51-67 280-296 (498)
90 PHA02562 46 endonuclease subun 29.4 3.4E+02 0.0074 23.9 7.9 28 45-72 298-325 (562)
91 PF13734 Inhibitor_I69: Spi pr 29.2 63 0.0014 23.7 2.8 52 3-59 41-93 (96)
92 PHA03161 hypothetical protein; 29.0 1.6E+02 0.0034 23.7 5.3 37 27-68 21-59 (150)
93 KOG0994|consensus 29.0 1.4E+02 0.003 31.8 6.0 50 65-114 1691-1741(1758)
94 PF07926 TPR_MLP1_2: TPR/MLP1/ 29.0 2.4E+02 0.0053 20.9 7.8 62 51-112 22-88 (132)
95 PF05957 DUF883: Bacterial pro 28.7 2E+02 0.0044 19.9 6.1 40 67-106 9-54 (94)
96 PRK13461 F0F1 ATP synthase sub 28.7 2.6E+02 0.0056 21.1 8.3 35 45-79 28-62 (159)
97 PF04518 Effector_1: Effector 28.4 4E+02 0.0086 24.3 8.2 68 44-111 198-270 (379)
98 PLN02678 seryl-tRNA synthetase 28.3 3.4E+02 0.0075 24.8 7.9 63 45-114 43-109 (448)
99 KOG1924|consensus 28.2 2.2E+02 0.0048 29.2 7.0 86 31-120 436-525 (1102)
100 PRK14900 valS valyl-tRNA synth 28.1 2.9E+02 0.0062 27.8 7.9 67 47-115 843-909 (1052)
101 smart00787 Spc7 Spc7 kinetocho 28.0 3E+02 0.0065 23.9 7.2 28 84-111 233-260 (312)
102 PF00038 Filament: Intermediat 27.9 3.4E+02 0.0074 22.2 8.5 26 53-78 82-107 (312)
103 PF10226 DUF2216: Uncharacteri 27.9 3.7E+02 0.008 22.6 8.2 68 46-114 13-82 (195)
104 PF07439 DUF1515: Protein of u 27.5 1.2E+02 0.0025 23.5 4.1 33 93-125 36-68 (112)
105 PF07569 Hira: TUP1-like enhan 27.2 2.8E+02 0.006 22.4 6.5 25 56-80 148-172 (219)
106 COG0544 Tig FKBP-type peptidyl 27.2 2.5E+02 0.0053 25.6 6.8 32 50-82 261-292 (441)
107 PLN02678 seryl-tRNA synthetase 27.1 2.3E+02 0.005 26.0 6.6 33 83-115 71-103 (448)
108 TIGR01005 eps_transp_fam exopo 26.7 2.5E+02 0.0055 26.2 6.9 20 45-64 319-338 (754)
109 PF10168 Nup88: Nuclear pore c 26.7 1E+02 0.0022 29.8 4.5 32 83-114 685-716 (717)
110 PF07888 CALCOCO1: Calcium bin 26.5 4.3E+02 0.0092 25.3 8.4 7 11-17 87-93 (546)
111 PF08286 Spc24: Spc24 subunit 26.4 22 0.00047 26.1 0.0 33 83-115 13-45 (118)
112 PF14280 DUF4365: Domain of un 25.6 79 0.0017 22.6 2.8 24 2-25 82-109 (138)
113 KOG2211|consensus 25.4 2.1E+02 0.0046 28.5 6.3 64 45-115 117-183 (797)
114 PLN02943 aminoacyl-tRNA ligase 25.3 2.4E+02 0.0052 28.0 6.8 62 51-115 887-956 (958)
115 KOG1029|consensus 25.3 3.3E+02 0.0071 28.0 7.6 30 85-114 439-468 (1118)
116 PF13863 DUF4200: Domain of un 25.3 1.4E+02 0.0031 21.2 4.1 37 80-116 71-107 (126)
117 KOG4403|consensus 25.0 2.1E+02 0.0045 27.4 6.0 39 77-117 291-329 (575)
118 PF09849 DUF2076: Uncharacteri 24.9 86 0.0019 26.6 3.3 24 88-111 53-76 (247)
119 PRK00846 hypothetical protein; 24.9 2.6E+02 0.0057 19.9 5.7 45 73-119 26-70 (77)
120 PRK05431 seryl-tRNA synthetase 24.5 4.9E+02 0.011 23.3 8.1 32 84-115 67-98 (425)
121 PF14197 Cep57_CLD_2: Centroso 24.4 2.4E+02 0.0053 19.4 8.0 26 85-110 35-60 (69)
122 PF00430 ATP-synt_B: ATP synth 24.2 1.8E+02 0.004 20.5 4.5 32 47-78 24-55 (132)
123 cd00585 Peptidase_C1B Peptidas 24.1 3.4E+02 0.0073 24.9 7.1 61 19-84 132-192 (437)
124 PRK14475 F0F1 ATP synthase sub 24.1 3.3E+02 0.0072 20.8 8.3 38 45-82 33-70 (167)
125 PF05266 DUF724: Protein of un 23.6 3.8E+02 0.0083 21.7 6.7 20 32-56 81-100 (190)
126 COG0172 SerS Seryl-tRNA synthe 23.4 3.5E+02 0.0076 25.0 7.0 66 45-114 39-106 (429)
127 TIGR03017 EpsF chain length de 23.3 4.8E+02 0.01 22.4 8.2 20 44-63 284-303 (444)
128 PRK09173 F0F1 ATP synthase sub 23.2 3.3E+02 0.0071 20.5 8.3 37 46-82 26-62 (159)
129 KOG3433|consensus 23.2 4.6E+02 0.01 22.2 7.8 44 57-109 99-142 (203)
130 PF04849 HAP1_N: HAP1 N-termin 23.2 4.1E+02 0.0088 23.6 7.2 41 67-107 178-223 (306)
131 KOG3478|consensus 23.2 89 0.0019 24.4 2.8 67 59-125 38-118 (120)
132 KOG2264|consensus 23.1 3.9E+02 0.0084 26.7 7.5 16 88-103 105-120 (907)
133 TIGR00414 serS seryl-tRNA synt 23.1 3.9E+02 0.0086 23.8 7.2 67 45-114 40-107 (418)
134 PF05103 DivIVA: DivIVA protei 23.1 1.3E+02 0.0029 21.4 3.6 34 85-118 27-60 (131)
135 PRK10404 hypothetical protein; 22.9 3.1E+02 0.0068 20.1 6.6 41 67-107 16-62 (101)
136 TIGR01069 mutS2 MutS2 family p 22.9 5E+02 0.011 25.2 8.3 12 27-38 484-495 (771)
137 PRK03947 prefoldin subunit alp 22.8 1.8E+02 0.0038 21.5 4.3 28 84-111 109-136 (140)
138 PF14193 DUF4315: Domain of un 22.0 1.4E+02 0.0031 21.5 3.5 26 87-112 5-30 (83)
139 cd07643 I-BAR_IMD_MIM Inverse 21.8 3.7E+02 0.0081 23.0 6.4 14 45-58 100-113 (231)
140 PRK00888 ftsB cell division pr 21.6 1.8E+02 0.0039 21.3 4.1 17 93-109 44-60 (105)
141 PRK13729 conjugal transfer pil 21.3 6.4E+02 0.014 23.8 8.3 65 43-115 58-122 (475)
142 PF05529 Bap31: B-cell recepto 21.3 4E+02 0.0086 20.7 7.8 26 85-110 163-188 (192)
143 PTZ00464 SNF-7-like protein; P 21.2 4.7E+02 0.01 21.5 7.6 24 91-114 79-102 (211)
144 PLN02318 phosphoribulokinase/u 21.1 2.5E+02 0.0055 27.4 5.9 92 25-116 383-530 (656)
145 KOG0728|consensus 21.0 2E+02 0.0044 26.1 4.9 37 65-111 30-66 (404)
146 PF09177 Syntaxin-6_N: Syntaxi 20.9 3.1E+02 0.0067 19.2 6.1 26 90-115 39-64 (97)
147 PF12269 zf-CpG_bind_C: CpG bi 20.8 1.3E+02 0.0029 25.6 3.6 33 82-114 28-60 (236)
148 PF12128 DUF3584: Protein of u 20.7 4.5E+02 0.0098 26.6 7.7 12 46-57 604-615 (1201)
149 PLN03229 acetyl-coenzyme A car 20.7 8.6E+02 0.019 24.4 9.4 37 41-77 641-680 (762)
150 COG2739 Uncharacterized protei 20.6 4E+02 0.0086 20.4 6.1 70 41-110 33-102 (105)
151 cd00632 Prefoldin_beta Prefold 20.6 1.4E+02 0.003 21.2 3.3 29 85-113 72-100 (105)
152 TIGR03185 DNA_S_dndD DNA sulfu 20.6 4.2E+02 0.009 24.7 7.0 26 86-111 438-463 (650)
153 PF06248 Zw10: Centromere/kine 20.6 4.2E+02 0.0092 24.3 7.0 27 86-112 72-98 (593)
154 PRK14127 cell division protein 20.5 1.4E+02 0.0031 22.5 3.4 30 89-118 43-72 (109)
155 COG2433 Uncharacterized conser 20.5 5.5E+02 0.012 25.3 7.9 25 86-110 484-508 (652)
156 PF04420 CHD5: CHD5-like prote 20.3 3.3E+02 0.0072 21.1 5.5 16 96-111 72-87 (161)
157 PF05384 DegS: Sensor protein 20.3 4.5E+02 0.0097 20.9 7.4 51 51-110 103-153 (159)
158 PF03051 Peptidase_C1_2: Pepti 20.3 4.2E+02 0.009 24.3 6.9 60 20-85 134-194 (438)
159 PRK14127 cell division protein 20.3 2.2E+02 0.0048 21.4 4.4 31 87-117 34-64 (109)
160 PHA03187 UL14 tegument protein 20.1 4.4E+02 0.0095 23.7 6.7 32 82-114 51-82 (322)
161 PF02403 Seryl_tRNA_N: Seryl-t 20.1 3.2E+02 0.0069 19.1 7.0 32 83-114 67-98 (108)
162 KOG1853|consensus 20.1 6.4E+02 0.014 22.6 7.8 70 44-113 47-121 (333)
163 PF06780 Erp_C: Erp protein C- 20.1 1.2E+02 0.0026 24.5 3.0 18 48-71 74-91 (146)
164 PRK00409 recombination and DNA 20.1 6.3E+02 0.014 24.6 8.3 23 14-38 478-500 (782)
No 1
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=99.51 E-value=5e-14 Score=95.47 Aligned_cols=66 Identities=36% Similarity=0.549 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHH-Hhhhhc-HHHHHHHHHHHhHHHHHHHHHHHHhcccccccCCC
Q psy1651 54 LKEHIRKEIRKELKIKEGAEKLREV-ARDRKS-LSDVATIVKKSNSKLSELHNELQELESQIIMTQGQ 119 (141)
Q Consensus 54 ~ra~Ir~eI~KELKIKeGAENL~rA-ttdkk~-r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~v~q~~ 119 (141)
+.+.|+.+|.+|+|||+|||||++| .+|++. +..|+.+|..|+++|+.|+.+|+.++++....++.
T Consensus 2 ~i~~L~~~i~~E~ki~~Gae~m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~~~~~~~ 69 (70)
T PF02185_consen 2 RIEELQKKIDKELKIKEGAENMLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQQRSQNSQSS 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---HC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCC
Confidence 5688999999999999999999999 578776 99999999999999999999999999988776653
No 2
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=99.43 E-value=8.8e-13 Score=89.80 Aligned_cols=67 Identities=34% Similarity=0.534 Sum_probs=61.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhc---HHHHHHHHHHHhHHHHHHHHHHHHhccc
Q psy1651 46 ALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKS---LSDVATIVKKSNSKLSELHNELQELESQ 112 (141)
Q Consensus 46 ~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdkk~---r~~Ve~eLs~sN~kL~~L~~eL~eLna~ 112 (141)
..+.+++.+.+.|+.+|.+|+++|+|||||.+++++.+. ++.|+.+|+.|+.+|+.|+.+|..+++.
T Consensus 2 ~~~~~~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~~~~~~~~~~~~~l~es~~ki~~Lr~~L~k~~~~ 71 (72)
T cd00089 2 QVRSKLQSRLERLEKELSIELKVKEGAENLLRLYSDEKKKKLLAEAEQMLRESKQKLELLKMQLEKLKQE 71 (72)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346788999999999999999999999999999998754 9999999999999999999999988753
No 3
>smart00742 Hr1 Rho effector or protein kinase C-related kinase homology region 1 homologues. Alpha-helical domain found in vertebrate PRK1 and yeast PKC1 protein kinases C. The HR1 in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Also called RBD - Rho-binding domain
Probab=99.39 E-value=1.5e-12 Score=86.02 Aligned_cols=54 Identities=41% Similarity=0.690 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhhhh-cHHHHHHHHHHHhHHHHHHHHHHH
Q psy1651 54 LKEHIRKEIRKELKIKEGAEKLREVARDRK-SLSDVATIVKKSNSKLSELHNELQ 107 (141)
Q Consensus 54 ~ra~Ir~eI~KELKIKeGAENL~rAttdkk-~r~~Ve~eLs~sN~kL~~L~~eL~ 107 (141)
+.+.|+.+|.+|++|++|||||++++++++ +++.|+..|..|+++|+.|+.+|+
T Consensus 2 ~l~~L~~ki~~E~~i~~Gae~m~~~~~~~~k~~~~a~~~l~es~~ki~~L~~~L~ 56 (57)
T smart00742 2 RLEDLRRKIEKELKVKEGAENMRKLTSNDRKVLSEAQSMLRESNQKLDLLKEELE 56 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457899999999999999999999999986 999999999999999999999986
No 4
>PF15456 Uds1: Up-regulated During Septation
Probab=94.81 E-value=0.2 Score=38.33 Aligned_cols=65 Identities=26% Similarity=0.346 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhh--------cHHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 50 KLEELKEHIRKEIRKELKIKEGAEKLREVARDRK--------SLSDVATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 50 kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdkk--------~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
.|+.+-+.+|+.|.=|.||++-|..|-+...+.+ .....+.+|..++++++++..+|+.++.+..
T Consensus 33 ~L~~R~~~lr~kl~le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le~R~~ 105 (124)
T PF15456_consen 33 SLDSRLEYLRRKLALESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKLENRLA 105 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3778888999999999999999999999966665 5788999999999999999999998876543
No 5
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.01 E-value=1.6 Score=35.72 Aligned_cols=29 Identities=10% Similarity=0.089 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 86 SDVATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 86 ~~Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
..++.+.+..+..++.++.+++.|++...
T Consensus 135 ~~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 135 NGLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666666666666666666665544
No 6
>KOG2220|consensus
Probab=85.24 E-value=0.11 Score=49.43 Aligned_cols=81 Identities=16% Similarity=0.135 Sum_probs=64.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCC-CCCCCCCccccccCCCCCC
Q psy1651 59 RKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQIIMTQG-QTVTSPTAANHEHGKSSDF 137 (141)
Q Consensus 59 r~eI~KELKIKeGAENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~v~q~-~~~~s~~~~~~~~~~~~~f 137 (141)
.++|.+..++|+||++..+...+.+++.++-.+|.+++.++..+..++....=.-..+++ ...+..+ +|++++..++|
T Consensus 38 ~~~i~~~~~lR~~a~~~~~~~~~~~~l~~yy~qL~~l~~r~p~~~~~~~~F~W~d~~~~~~~~~~~~~-L~fEka~vLfn 116 (714)
T KOG2220|consen 38 NDAIEKLEKLRNNANGVPKPSEGLEVLKRYYGQLCYLESRFPMSENEIEEFTWKDAFDSGAKKVTQIS-LGFEKACVLFN 116 (714)
T ss_pred HHHHHHHHHHHhccccCCcchhhhHHHHHHHHHHHHHHHhcCcccccccceeeeecccCCccceeecc-chhhHHHHHHH
Confidence 799999999999999999999999999999999999999999888877662222223333 3445555 79999988887
Q ss_pred CCC
Q psy1651 138 LSP 140 (141)
Q Consensus 138 ~~p 140 (141)
+.+
T Consensus 117 i~~ 119 (714)
T KOG2220|consen 117 IAA 119 (714)
T ss_pred HHH
Confidence 654
No 7
>PF08690 GET2: GET complex subunit GET2; InterPro: IPR014802 This family corresponds to the GET complex subunit GET2. The GET complex is involved in the retrieval of ER resident proteins from the Golgi []. ; PDB: 3SJD_D 3ZS9_C.
Probab=77.66 E-value=2.9 Score=36.13 Aligned_cols=28 Identities=39% Similarity=0.686 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHhhhhh--HHHHHHHHh
Q psy1651 52 EELKEHIRKEIRKELKIKEG--AEKLREVAR 80 (141)
Q Consensus 52 e~~ra~Ir~eI~KELKIKeG--AENL~rAtt 80 (141)
+..|++|||| |||-|||.| +.+|-|.|+
T Consensus 4 ~aEkrRLrRE-RReAKi~~GgaSaRLnKITg 33 (302)
T PF08690_consen 4 EAEKRRLRRE-RREAKIKAGGASARLNKITG 33 (302)
T ss_dssp HHHHHHHHHH-HHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHCCCcHHHHHHHhc
Confidence 4566778777 788899987 579999987
No 8
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=69.70 E-value=28 Score=28.15 Aligned_cols=61 Identities=28% Similarity=0.342 Sum_probs=32.7
Q ss_pred EEeecCceeEEEecCCcccch-hhhhhhhhcCCcccCcccchhhhhHHHHHHHHHHHHHHHHhhhhhHH
Q psy1651 6 YLVQNDRYYWISSEGDYIRHP-VLYELSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKEGAE 73 (141)
Q Consensus 6 ~~~~~~~~~~~~~~~d~~~~~-~~~~L~~~~~~~~~d~~~~~~q~kLe~~ra~Ir~eI~KELKIKeGAE 73 (141)
.+..||++|+|-.-.-....+ .+.+.-..+| .-..+.+-...++.++++++|--+|..+.+
T Consensus 124 lv~e~~~~YeIi~~~~~~~~~~~~~~~~~~~G-------~~l~~~~~~~~~~~l~~~~~~~~~i~~~l~ 185 (205)
T PF04816_consen 124 LVEENGRFYEIIVAERGEEKPESLSEAELEFG-------PVLLEKKDPLLKEYLQRKLRKLKRILQQLE 185 (205)
T ss_dssp EEEETTEEEEEEEEEESSS------HHHHHH--------HHHHHHT-HHHHHHHHHHHHHHHHHHHHSH
T ss_pred EEeECCEEEEEEEEEeCCCCCCCCChHHHHhC-------HHHHhccCHHHHHHHHHHHHHHHHHHHhcc
Confidence 456789999997521111111 1112222233 123445566777888888888878877765
No 9
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=68.78 E-value=31 Score=24.64 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=45.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh----------------hcHHHHHHHHHHHhHHHHHHHHHHH
Q psy1651 45 EALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDR----------------KSLSDVATIVKKSNSKLSELHNELQ 107 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdk----------------k~r~~Ve~eLs~sN~kL~~L~~eL~ 107 (141)
...|..|++.-..|..++.+|..++.--|+.+.-.... .-.+.||.++.....++..|+.+|.
T Consensus 7 ~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~ 85 (88)
T PF14389_consen 7 HERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQLF 85 (88)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677799999999999999999999888776542111 1256677777777777777776654
No 10
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=68.76 E-value=70 Score=29.92 Aligned_cols=77 Identities=10% Similarity=0.157 Sum_probs=34.3
Q ss_pred hhcCCcccCcccchhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhccc
Q psy1651 33 HKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQ 112 (141)
Q Consensus 33 ~~~~~~~~d~~~~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~ 112 (141)
...|+...++.+-.-+++|++.++.. .++.|+|.--..-..+. .+.++.-+..|+.....++.|+.++..+-+.
T Consensus 53 ~~~~vV~~~FddkVnqSALteqQ~ka-sELEKqLaaLrqElq~~-----saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 53 DMTGVVDTTFDDKVRQHATTEMQVTA-AQMQKQYEEIRRELDVL-----NKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred CccceecchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-----hhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 34555556666655556666554322 23333332111111111 1223334555555555556666665544444
Q ss_pred ccc
Q psy1651 113 IIM 115 (141)
Q Consensus 113 i~v 115 (141)
...
T Consensus 127 ~~~ 129 (475)
T PRK13729 127 PVT 129 (475)
T ss_pred CCC
Confidence 333
No 11
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=68.46 E-value=14 Score=28.05 Aligned_cols=39 Identities=13% Similarity=0.318 Sum_probs=30.4
Q ss_pred HHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q psy1651 73 EKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELES 111 (141)
Q Consensus 73 ENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna 111 (141)
|..+.+..+++.++.++.++.....++.+|..+++.++.
T Consensus 95 E~~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 95 EYWRSARKEAKKEEELQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555555566677888888899999999999988888765
No 12
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=67.16 E-value=37 Score=32.69 Aligned_cols=68 Identities=18% Similarity=0.299 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHhh-hhcHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCCCCCCCCCcc
Q psy1651 57 HIRKEIRKELKIKEGAEKLREVARD-RKSLSDVATIVKKSNSKLSELHNELQELESQIIMTQGQTVTSPTAA 127 (141)
Q Consensus 57 ~Ir~eI~KELKIKeGAENL~rAttd-kk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~v~q~~~~~s~~~~ 127 (141)
.|-.-+.-|-|||= -|+.|+.| |++.+-.+..|..-...|.+|+..|.++-|-++-..-.+.+.|+.|
T Consensus 605 ~LE~sLsaEtriKl---dLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p~~~~~~~~~~~~~ 673 (697)
T PF09726_consen 605 HLENSLSAETRIKL---DLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMPSDSYCSAITPPTP 673 (697)
T ss_pred HHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCCc
Confidence 44444555555553 36667666 4677777888888888888888888888776655222234444434
No 13
>PRK11637 AmiB activator; Provisional
Probab=67.13 E-value=34 Score=29.94 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=17.9
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 84 SLSDVATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 84 ~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
.....+.+++..+.+|..|+.+|.+++..+.
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666665555543
No 14
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=66.14 E-value=64 Score=25.46 Aligned_cols=49 Identities=22% Similarity=0.224 Sum_probs=37.9
Q ss_pred hhhhhhhhcCCcccCcccchhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh
Q psy1651 27 VLYELSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDR 82 (141)
Q Consensus 27 ~~~~L~~~~~~~~~d~~~~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdk 82 (141)
+++-|..++.| ..+..-|+++.+.|..+|..-=+.|+-|+.|+.-....
T Consensus 16 Ill~ll~kfaw-------kPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~ 64 (154)
T PRK06568 16 IFVYLIYRPAK-------KAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQ 64 (154)
T ss_pred HHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666776 55677799999999999999999999999888765443
No 15
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=65.87 E-value=44 Score=26.60 Aligned_cols=11 Identities=36% Similarity=0.652 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q psy1651 56 EHIRKEIRKEL 66 (141)
Q Consensus 56 a~Ir~eI~KEL 66 (141)
+.++++|...+
T Consensus 37 ~~l~~~i~~~l 47 (302)
T PF10186_consen 37 EELRRRIEEIL 47 (302)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 16
>KOG4429|consensus
Probab=64.64 E-value=21 Score=32.35 Aligned_cols=63 Identities=29% Similarity=0.341 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHh------hhhcHHHHHHHHHHHhHHHHHHHHHHHHhcccc
Q psy1651 51 LEELKEHIRKEIRKELKIKEGAEKLREVAR------DRKSLSDVATIVKKSNSKLSELHNELQELESQI 113 (141)
Q Consensus 51 Le~~ra~Ir~eI~KELKIKeGAENL~rAtt------dkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i 113 (141)
|+-.--+|.++|.|.-|=|+|-|.|++.-+ |.+..+++..-...-+.+|+.+..----|+..+
T Consensus 224 Lepkl~rLdrdiekaskdkeglermlklYnstssfsdaksqaDtaalmden~lkLdfiEa~sYKLndmi 292 (421)
T KOG4429|consen 224 LEPKLGRLDRDIEKASKDKEGLERMLKLYNSTSSFSDAKSQADTAALMDENILKLDFIEALSYKLNDMI 292 (421)
T ss_pred hhhhhhhhHHHHHHhhcchhHHHHHHHHhccccccccchhhhHHHHhccchhHHHHHHHHHHHHHHHHH
Confidence 555566899999999999999999999866 345666777766767777765544333444433
No 17
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=64.52 E-value=64 Score=25.06 Aligned_cols=69 Identities=13% Similarity=0.153 Sum_probs=43.6
Q ss_pred hhhhhhhhcCCcccCcccchhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh--hcHHHHHHHHHHHhHHHHHH
Q psy1651 27 VLYELSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDR--KSLSDVATIVKKSNSKLSEL 102 (141)
Q Consensus 27 ~~~~L~~~~~~~~~d~~~~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdk--k~r~~Ve~eLs~sN~kL~~L 102 (141)
+++-+..++.| ..+..=|+++++.|...|..--+.++.|+.++.-...+ ..+......+......-+..
T Consensus 34 il~~lL~~fl~-------kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~ 104 (167)
T PRK08475 34 IFVGILWYFAA-------KPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYIL 104 (167)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455554 56777799999999999998888888888887664443 33344444444443333333
No 18
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=63.42 E-value=42 Score=25.03 Aligned_cols=48 Identities=13% Similarity=0.246 Sum_probs=34.4
Q ss_pred hhhhhHHHHHHHHhhh-----hcHHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 67 KIKEGAEKLREVARDR-----KSLSDVATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 67 KIKeGAENL~rAttdk-----k~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
.+++.++.....+... ..+..++.+++.+..++.+|..+=.-|+.++.
T Consensus 77 ~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 77 ELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666666665544 34788889999999999888877666666554
No 19
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=63.38 E-value=33 Score=24.21 Aligned_cols=59 Identities=34% Similarity=0.508 Sum_probs=28.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhc
Q psy1651 45 EALPNKLEELKEHIRKEIRKELKIKEG----AEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELE 110 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELKIKeG----AENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLn 110 (141)
..++.+++.+|+. |.+|.|++...-+ ++.|..- -..+..+++.....+..+..++..+=
T Consensus 39 r~l~~~~e~lr~~-rN~~sk~I~~~~~~~~~~~~l~~e------~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 39 RELQQELEELRAE-RNELSKEIGKLKKAGEDAEELKAE------VKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHCHTTCCTHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhHHHHHHHHHhhCcccHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665 4455565543322 2222222 22344445555555555555555443
No 20
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=63.24 E-value=33 Score=27.89 Aligned_cols=32 Identities=16% Similarity=0.374 Sum_probs=24.8
Q ss_pred hcHHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 83 KSLSDVATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 83 k~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
...-.|+.+|+.+...|+.++.++..|+-++.
T Consensus 162 ~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 162 EDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33567888888888888888888888877665
No 21
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=62.14 E-value=71 Score=24.63 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=31.6
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh
Q psy1651 45 EALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDR 82 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdk 82 (141)
+.+..=|+++++.|...|..--+.++-|+.++.-...+
T Consensus 41 kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~ 78 (175)
T PRK14472 41 GPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNREL 78 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999999999888888887765544
No 22
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=59.12 E-value=9.5 Score=25.37 Aligned_cols=29 Identities=21% Similarity=0.468 Sum_probs=26.3
Q ss_pred cCceeEEEecCCcccchhhhhhhhhcCCc
Q psy1651 10 NDRYYWISSEGDYIRHPVLYELSHKYGFI 38 (141)
Q Consensus 10 ~~~~~~~~~~~d~~~~~~~~~L~~~~~~~ 38 (141)
|++.+.+.+.|+....|++..|+..||+.
T Consensus 1 n~~l~~l~f~g~~~~~piis~l~~~~~v~ 29 (76)
T PF09383_consen 1 NGRLVRLTFTGNSAQEPIISQLIREFGVD 29 (76)
T ss_dssp SSEEEEEEEESCSSSSCHHHHHHHHHT-E
T ss_pred CCeEEEEEEcCCCcCchHHHHHHHHhCCC
Confidence 78899999999999999999999999984
No 23
>PRK11637 AmiB activator; Provisional
Probab=57.84 E-value=62 Score=28.33 Aligned_cols=26 Identities=12% Similarity=0.299 Sum_probs=12.1
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy1651 84 SLSDVATIVKKSNSKLSELHNELQEL 109 (141)
Q Consensus 84 ~r~~Ve~eLs~sN~kL~~L~~eL~eL 109 (141)
....++.++...+.+|..++.+|..+
T Consensus 97 ~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 97 TLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 24
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=56.93 E-value=54 Score=27.96 Aligned_cols=13 Identities=31% Similarity=0.529 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q psy1651 51 LEELKEHIRKEIR 63 (141)
Q Consensus 51 Le~~ra~Ir~eI~ 63 (141)
+.++.+.|..+|.
T Consensus 182 l~~~~~~L~~e~~ 194 (325)
T PF08317_consen 182 LRERKAELEEELE 194 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 25
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=56.59 E-value=96 Score=25.16 Aligned_cols=38 Identities=11% Similarity=0.261 Sum_probs=32.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh
Q psy1651 45 EALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDR 82 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdk 82 (141)
+.+..=|++|++.|...|..--+.|.-|+.++......
T Consensus 76 ~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~ 113 (204)
T PRK09174 76 PRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQE 113 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888899999999999999999999999888765443
No 26
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=56.42 E-value=1.7e+02 Score=27.47 Aligned_cols=46 Identities=22% Similarity=0.370 Sum_probs=29.8
Q ss_pred hhcCCcccCccc--chhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q psy1651 33 HKYGFITENVAE--EALPNKLEELKEHIRKEIRKELKIKEGAEKLREV 78 (141)
Q Consensus 33 ~~~~~~~~d~~~--~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rA 78 (141)
...|+.++-|.| .++-.++.+.|.++..-+..==++|+--|+|++-
T Consensus 48 kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 48 KALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKR 95 (472)
T ss_pred HhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346776555544 5566677777777776666666677777777663
No 27
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=55.84 E-value=93 Score=24.45 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=30.7
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh
Q psy1651 45 EALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDR 82 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdk 82 (141)
+.+..=|+++++.|...+..--+.++-|+.++.-...+
T Consensus 54 ~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~ 91 (181)
T PRK13454 54 PRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKA 91 (181)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788899999999999988888888888877654443
No 28
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=55.41 E-value=74 Score=27.61 Aligned_cols=29 Identities=28% Similarity=0.493 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhcccc
Q psy1651 85 LSDVATIVKKSNSKLSELHNELQELESQI 113 (141)
Q Consensus 85 r~~Ve~eLs~sN~kL~~L~~eL~eLna~i 113 (141)
.+.++.+|+.++.+|+...++.+++++.|
T Consensus 227 l~e~~~~l~~l~~~I~~~~~~k~e~~~~I 255 (312)
T smart00787 227 LEELEEELQELESKIEDLTNKKSELNTEI 255 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555444443
No 29
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=54.84 E-value=70 Score=27.18 Aligned_cols=31 Identities=16% Similarity=0.410 Sum_probs=14.3
Q ss_pred HHHhhhhcHHHHHHHHHHHhHHHHHHHHHHH
Q psy1651 77 EVARDRKSLSDVATIVKKSNSKLSELHNELQ 107 (141)
Q Consensus 77 rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~ 107 (141)
.+.+|-+.......++...++++..|..+|.
T Consensus 83 ~~v~~~~e~~aL~~E~~~ak~r~~~le~el~ 113 (239)
T COG1579 83 SAVKDERELRALNIEIQIAKERINSLEDELA 113 (239)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544444444444444444444444443
No 30
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=54.40 E-value=20 Score=23.50 Aligned_cols=29 Identities=21% Similarity=0.409 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhcccc
Q psy1651 85 LSDVATIVKKSNSKLSELHNELQELESQI 113 (141)
Q Consensus 85 r~~Ve~eLs~sN~kL~~L~~eL~eLna~i 113 (141)
...|...|...+++|+++-..|+.|+-++
T Consensus 18 Q~~v~~~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 18 QNKVTSALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45677788888888888888888887554
No 31
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=54.08 E-value=85 Score=25.63 Aligned_cols=58 Identities=31% Similarity=0.440 Sum_probs=30.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhc
Q psy1651 47 LPNKLEELKEHIRKEIRKELKI-KEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELE 110 (141)
Q Consensus 47 ~q~kLe~~ra~Ir~eI~KELKI-KeGAENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLn 110 (141)
...+=.++.+..|....++.++ ++|...-.+... ...........+|++|+.+|++.+
T Consensus 115 C~N~C~e~~~~~~~~~~~~~~~~~~G~~~r~~~i~------~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 115 CPNTCAELGKEYREELEEEEEIYKEGLKIRQELIE------EAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555666666666665554 666664333322 222333444556666666666554
No 32
>KOG0971|consensus
Probab=53.42 E-value=52 Score=33.77 Aligned_cols=43 Identities=28% Similarity=0.434 Sum_probs=33.3
Q ss_pred hHHHHHHHHhhhhc------------------HHHHHHHHHHHhHHHH-HHHHHHHHhcccc
Q psy1651 71 GAEKLREVARDRKS------------------LSDVATIVKKSNSKLS-ELHNELQELESQI 113 (141)
Q Consensus 71 GAENL~rAttdkk~------------------r~~Ve~eLs~sN~kL~-~L~~eL~eLna~i 113 (141)
|||-|-.-++||+. .+.+..+|-.+|+.++ +|++||..++.++
T Consensus 445 GAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~ 506 (1243)
T KOG0971|consen 445 GAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGAR 506 (1243)
T ss_pred cHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999942 5566677888888776 5888888765554
No 33
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=51.91 E-value=1.1e+02 Score=24.57 Aligned_cols=43 Identities=16% Similarity=0.320 Sum_probs=25.7
Q ss_pred hhhhhHHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy1651 67 KIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQEL 109 (141)
Q Consensus 67 KIKeGAENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eL 109 (141)
.+++..+.....-.+...|...-.+|.....++..|+.+|+.+
T Consensus 87 ~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 87 ELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443222223457777777888888888888877744
No 34
>KOG1656|consensus
Probab=51.61 E-value=95 Score=26.48 Aligned_cols=60 Identities=23% Similarity=0.300 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhh---hhhHHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhc
Q psy1651 51 LEELKEHIRKEIRKELKI---KEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELE 110 (141)
Q Consensus 51 Le~~ra~Ir~eI~KELKI---KeGAENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLn 110 (141)
|+..++.|.++|..|+.. |-|+-|=|-|+.-=|-+.+.+.+|...---+.-++.+...|+
T Consensus 33 L~KKqe~Le~ki~~e~e~~A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alE 95 (221)
T KOG1656|consen 33 LEKKQEFLEKKIEQEVENNARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALE 95 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455667888899888665 888888888877655556677777766666666666655544
No 35
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=50.18 E-value=1.1e+02 Score=24.46 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=31.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q psy1651 45 EALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARD 81 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttd 81 (141)
+.+..-+++|+..|...|..--+.|+-|+.+......
T Consensus 33 ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~ 69 (155)
T PRK06569 33 PKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNE 69 (155)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7788889999999999999999999998888766443
No 36
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=49.80 E-value=1.3e+02 Score=23.94 Aligned_cols=10 Identities=40% Similarity=0.680 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy1651 97 SKLSELHNEL 106 (141)
Q Consensus 97 ~kL~~L~~eL 106 (141)
.+++.++..|
T Consensus 91 ~~l~~~~~~l 100 (302)
T PF10186_consen 91 ERLEELRESL 100 (302)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 37
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=49.79 E-value=1.2e+02 Score=23.53 Aligned_cols=50 Identities=16% Similarity=0.247 Sum_probs=37.4
Q ss_pred hhhhhhhhcCCcccCcccchhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh
Q psy1651 27 VLYELSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDR 82 (141)
Q Consensus 27 ~~~~L~~~~~~~~~d~~~~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdk 82 (141)
+++-+..++.| .+.+..=|+++++.|...|..--+.++-|+.++.....+
T Consensus 38 il~~iL~~f~~------~~~v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~ 87 (184)
T PRK13455 38 LFIGILVYFKV------PGMIGGMLDKRAEGIRSELEEARALREEAQTLLASYERK 87 (184)
T ss_pred HHHHHHHHHhc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555 245677899999999999999999999999887765554
No 38
>KOG0964|consensus
Probab=48.84 E-value=34 Score=35.08 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=22.6
Q ss_pred CCCCeEEeecCceeEEEecCCcccchhhhhhh
Q psy1651 1 MNNPVYLVQNDRYYWISSEGDYIRHPVLYELS 32 (141)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~L~ 32 (141)
++||.|+|+-|.--..-.--|..+.-++-+++
T Consensus 132 rsNPYyIV~QGkI~~La~akD~eRL~LLkeVa 163 (1200)
T KOG0964|consen 132 RSNPYYIVPQGKINELANAKDSERLELLKEVA 163 (1200)
T ss_pred cCCCceEeechhhHHhhcCCcHHHHHHHHHhc
Confidence 57999999988866666556666666655555
No 39
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=48.46 E-value=86 Score=27.75 Aligned_cols=71 Identities=27% Similarity=0.400 Sum_probs=37.7
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh--------------hhhcHHHHHHHHHHHhHHHHHHHHHHHHh-
Q psy1651 45 EALPNKLEELKEHIRKEIRKELKIKEGAEKLREVAR--------------DRKSLSDVATIVKKSNSKLSELHNELQEL- 109 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAtt--------------dkk~r~~Ve~eLs~sN~kL~~L~~eL~eL- 109 (141)
+.+..+++.+++.+++-..+=.+|+.-...+.++-. -++.+.....+++....++..|+++|+..
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~~ 409 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERSY 409 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566666666666555544444455555444444211 11234555566666666666666666665
Q ss_pred -cccccc
Q psy1651 110 -ESQIIM 115 (141)
Q Consensus 110 -na~i~v 115 (141)
++.|.+
T Consensus 410 ~~~~I~v 416 (451)
T PF03961_consen 410 KEARIKV 416 (451)
T ss_pred cceEEEE
Confidence 444444
No 40
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=48.08 E-value=1.3e+02 Score=23.33 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=31.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh
Q psy1651 45 EALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDR 82 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdk 82 (141)
+.+..=|+++++.|...|..--+.++-|+.++.-...+
T Consensus 41 ~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~ 78 (173)
T PRK13453 41 GPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQK 78 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788899999999999999888888888877654443
No 41
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=47.26 E-value=1e+02 Score=29.84 Aligned_cols=27 Identities=11% Similarity=0.342 Sum_probs=14.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 88 VATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 88 Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
...||...+.+|+.|+..|+.+...+.
T Consensus 637 ~~~EL~~~~~~l~~l~~si~~lk~k~~ 663 (717)
T PF10168_consen 637 FKKELERMKDQLQDLKASIEQLKKKLD 663 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555556666666666655555443
No 42
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=46.78 E-value=1.4e+02 Score=26.34 Aligned_cols=72 Identities=21% Similarity=0.366 Sum_probs=45.2
Q ss_pred ccchhhhhHHHH---HHHHHHHHHHHHh-hhhhHHHHHHH-----Hh---hhhcHHHHHHHHHHHhHHHHHHHHHHHHhc
Q psy1651 43 AEEALPNKLEEL---KEHIRKEIRKELK-IKEGAEKLREV-----AR---DRKSLSDVATIVKKSNSKLSELHNELQELE 110 (141)
Q Consensus 43 ~~~~~q~kLe~~---ra~Ir~eI~KELK-IKeGAENL~rA-----tt---dkk~r~~Ve~eLs~sN~kL~~L~~eL~eLn 110 (141)
....+|.++... ++++.+--..++. |-.|-|.||-- ++ |-+..++...|++...++++.|..+|..|+
T Consensus 162 l~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~ 241 (289)
T COG4985 162 LERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDALR 241 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566665432 3333322223332 55677777632 11 125578999999999999999999999887
Q ss_pred cccc
Q psy1651 111 SQII 114 (141)
Q Consensus 111 a~i~ 114 (141)
+...
T Consensus 242 ~e~~ 245 (289)
T COG4985 242 AELE 245 (289)
T ss_pred hhhh
Confidence 7543
No 43
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=46.76 E-value=1.5e+02 Score=23.85 Aligned_cols=48 Identities=27% Similarity=0.283 Sum_probs=33.4
Q ss_pred hhhhhhhhcCCcccCcccchhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q psy1651 27 VLYELSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARD 81 (141)
Q Consensus 27 ~~~~L~~~~~~~~~d~~~~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttd 81 (141)
+++-+..++.+ ..+..=|+++++.|.+.|..--+.++-|+.++.-...
T Consensus 60 Ilv~lL~k~l~-------kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~ 107 (205)
T PRK06231 60 ILLLLGIFLFW-------KPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQ 107 (205)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555 4477778899999999888888888777777554433
No 44
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=46.67 E-value=1.4e+02 Score=23.33 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q psy1651 86 SDVATIVKKSNSKLSELHNELQ 107 (141)
Q Consensus 86 ~~Ve~eLs~sN~kL~~L~~eL~ 107 (141)
.++..+.+..+.+|+++..+|.
T Consensus 116 ~~~r~e~~~~~~ki~e~~~ki~ 137 (177)
T PF07798_consen 116 GRIREEQAKQELKIQELNNKID 137 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666665555443
No 45
>PRK10884 SH3 domain-containing protein; Provisional
Probab=44.31 E-value=1.1e+02 Score=25.18 Aligned_cols=30 Identities=30% Similarity=0.252 Sum_probs=14.0
Q ss_pred CCeEEee-c--CceeEEEecCCcccchhhhhhh
Q psy1651 3 NPVYLVQ-N--DRYYWISSEGDYIRHPVLYELS 32 (141)
Q Consensus 3 ~~~~~~~-~--~~~~~~~~~~d~~~~~~~~~L~ 32 (141)
.||-++. + +.+|.|.-.+.-..+--...|+
T Consensus 54 ~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls 86 (206)
T PRK10884 54 EEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLS 86 (206)
T ss_pred CEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhc
Confidence 4555554 2 3567776433333333333333
No 46
>PRK09039 hypothetical protein; Validated
Probab=44.28 E-value=95 Score=27.02 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHh
Q psy1651 85 LSDVATIVKKSNSKLSELHNELQEL 109 (141)
Q Consensus 85 r~~Ve~eLs~sN~kL~~L~~eL~eL 109 (141)
++.++.+|..++.+..+.+.+|++|
T Consensus 153 la~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 153 LAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333
No 47
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=43.60 E-value=1.5e+02 Score=28.10 Aligned_cols=62 Identities=19% Similarity=0.333 Sum_probs=45.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh-hhcHHHHHHHHHHHhHHHHHHHHHHHH
Q psy1651 47 LPNKLEELKEHIRKEIRKELKIKEGAEKLREVARD-RKSLSDVATIVKKSNSKLSELHNELQE 108 (141)
Q Consensus 47 ~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttd-kk~r~~Ve~eLs~sN~kL~~L~~eL~e 108 (141)
+..|+.++-..+...=.|-..+..-.+.|.+-+.. .+.+.....+|+.++.++..|++||..
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~T 480 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELET 480 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555777777777777666554 367889999999999999999999973
No 48
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=43.34 E-value=1.7e+02 Score=26.53 Aligned_cols=75 Identities=12% Similarity=0.173 Sum_probs=46.0
Q ss_pred hhhhh-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCCCC
Q psy1651 46 ALPNK-LEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQIIMTQGQT 120 (141)
Q Consensus 46 ~~q~k-Le~~ra~Ir~eI~KELKIKeGAENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~v~q~~~ 120 (141)
.+|.+ ++++.+.|.++|.+--+--..++---..-..+...+....++.....++..|+..|+.|...........
T Consensus 162 ~vQ~~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~~ 237 (475)
T PF10359_consen 162 RVQIELIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDSESSSDQSS 237 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Confidence 34444 5566667777666544333333320001112245667778889999999999999999988877655543
No 49
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=42.70 E-value=1.6e+02 Score=22.75 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=29.6
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q psy1651 45 EALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARD 81 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttd 81 (141)
+.+..=|+++++.|...|..--+.++-|+.++.-...
T Consensus 39 kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~ 75 (173)
T PRK13460 39 DVILKALDERASGVQNDINKASELRLEAEALLKDYEA 75 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999888888888777655433
No 50
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=42.69 E-value=94 Score=27.75 Aligned_cols=63 Identities=32% Similarity=0.455 Sum_probs=31.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhh--hhh--HHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 45 EALPNKLEELKEHIRKEIRKELKI--KEG--AEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELKI--KeG--AENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
..++.+++++|+.. .+|.|+++- +.+ ++.|.. .-..+..+++....++..+.+++.++=.+++
T Consensus 38 r~l~~~~~~lr~~r-n~~sk~i~~~~~~~~~~~~l~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iP 104 (425)
T PRK05431 38 RELQTELEELQAER-NALSKEIGQAKRKGEDAEALIA------EVKELKEEIKALEAELDELEAELEELLLRIP 104 (425)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhhcCCcHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44555566665543 355666653 222 222211 1234555666666666666666665544443
No 51
>KOG2264|consensus
Probab=42.16 E-value=33 Score=33.72 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=11.6
Q ss_pred EEeecCceeEEEecCCc
Q psy1651 6 YLVQNDRYYWISSEGDY 22 (141)
Q Consensus 6 ~~~~~~~~~~~~~~~d~ 22 (141)
|+|.=-.+||+..+.|.
T Consensus 41 ~~vs~~a~~~lt~~qdA 57 (907)
T KOG2264|consen 41 YNVSFSAPSWLTTLQDA 57 (907)
T ss_pred hhcccccceeeeccccc
Confidence 44555668888876665
No 52
>PRK09039 hypothetical protein; Validated
Probab=41.75 E-value=1.4e+02 Score=25.90 Aligned_cols=11 Identities=18% Similarity=0.308 Sum_probs=4.1
Q ss_pred hhhhhHHHHHH
Q psy1651 67 KIKEGAEKLRE 77 (141)
Q Consensus 67 KIKeGAENL~r 77 (141)
+++.-.+.|++
T Consensus 141 ~L~~qI~aLr~ 151 (343)
T PRK09039 141 LLNQQIAALRR 151 (343)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 53
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=41.54 E-value=1.2e+02 Score=21.13 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhccc
Q psy1651 86 SDVATIVKKSNSKLSELHNELQELESQ 112 (141)
Q Consensus 86 ~~Ve~eLs~sN~kL~~L~~eL~eLna~ 112 (141)
.-....|.....+|+.|..+|.+|+++
T Consensus 53 d~q~~~L~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 53 DAQKAVLARTREKLEALEARLAALEAQ 79 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344566788888999999999888764
No 54
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=40.45 E-value=1.7e+02 Score=22.52 Aligned_cols=38 Identities=21% Similarity=0.194 Sum_probs=31.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh
Q psy1651 45 EALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDR 82 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdk 82 (141)
..+..=|++++..|...|..-=+.++.|+.++.-...+
T Consensus 42 kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~ 79 (174)
T PRK07352 42 GFLGKILEERREAILQALKEAEERLRQAAQALAEAQQK 79 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33777799999999999999989998888888765544
No 55
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=40.20 E-value=44 Score=22.79 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 86 SDVATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 86 ~~Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
.++..+++.+|.++.+|..++..+.+.+.
T Consensus 6 d~Ls~dVq~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 6 DQLSSDVQTLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888887776554
No 56
>PRK10132 hypothetical protein; Provisional
Probab=39.49 E-value=1.5e+02 Score=22.09 Aligned_cols=53 Identities=4% Similarity=0.231 Sum_probs=35.6
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh------hcHHHHHHHHHHHhHHHHHHHH
Q psy1651 45 EALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDR------KSLSDVATIVKKSNSKLSELHN 104 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdk------k~r~~Ve~eLs~sN~kL~~L~~ 104 (141)
+.+..+.+.++..|+ .+-..+|.|++.+.+. ..|.+++.-|+.+..++.+...
T Consensus 8 ~~~~~q~e~L~~Dl~-------~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~ 66 (108)
T PRK10132 8 NDVDDGVQDIQNDVN-------QLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMHGRTR 66 (108)
T ss_pred chhhhHHHHHHHHHH-------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 344555555555555 5667888888877755 4577888888877777775544
No 57
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=39.32 E-value=1.5e+02 Score=21.74 Aligned_cols=49 Identities=18% Similarity=0.214 Sum_probs=34.3
Q ss_pred hhhhhhhhcCCcccCcccchhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh
Q psy1651 27 VLYELSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDR 82 (141)
Q Consensus 27 ~~~~L~~~~~~~~~d~~~~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdk 82 (141)
+++-+..++.| +.+..=|++++..|...|..--+.++-|+.++.-...+
T Consensus 7 il~~il~~~~~-------~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~ 55 (147)
T TIGR01144 7 LLVWFCMKYVW-------PPLAKAIETRQKKIADGLASAERAKKEAALAQKKAQVI 55 (147)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555 55777788899999988888888888777776654443
No 58
>KOG3915|consensus
Probab=39.11 E-value=1.6e+02 Score=28.40 Aligned_cols=53 Identities=25% Similarity=0.337 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcHHHHHHHHHHHhHHHH-HHHHHH
Q psy1651 51 LEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLS-ELHNEL 106 (141)
Q Consensus 51 Le~~ra~Ir~eI~KELKIKeGAENL~rAttdkk~r~~Ve~eLs~sN~kL~-~L~~eL 106 (141)
.+..|++|+-+.-+|--+||--|+-+-. .+|.|..|+..|++ .+|+. .|++.|
T Consensus 526 iq~Ek~ELkmd~lrerelreslekql~~--ErklR~~~qkr~kk-Ekk~k~k~qe~L 579 (641)
T KOG3915|consen 526 IQLEKTELKMDFLRERELRESLEKQLAM--ERKLRAIVQKRLKK-EKKAKRKLQEAL 579 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 6677788888888887788777765443 67889999998887 44443 344444
No 59
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=38.37 E-value=2.1e+02 Score=24.40 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=5.6
Q ss_pred hhhhhHHHHHHH
Q psy1651 67 KIKEGAEKLREV 78 (141)
Q Consensus 67 KIKeGAENL~rA 78 (141)
.++.-..+|+.+
T Consensus 188 ~L~~e~~~Lk~~ 199 (325)
T PF08317_consen 188 ELEEELENLKQL 199 (325)
T ss_pred HHHHHHHHHHHH
Confidence 344444455544
No 60
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=37.52 E-value=99 Score=20.05 Aligned_cols=27 Identities=15% Similarity=0.391 Sum_probs=15.5
Q ss_pred hcHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy1651 83 KSLSDVATIVKKSNSKLSELHNELQEL 109 (141)
Q Consensus 83 k~r~~Ve~eLs~sN~kL~~L~~eL~eL 109 (141)
.....+..++.....+.+.|+.+++.|
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555666666666666665
No 61
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=37.20 E-value=1.6e+02 Score=21.42 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=32.7
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh
Q psy1651 45 EALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDR 82 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdk 82 (141)
+.+..=|+++++.|...|..--+.++.|+.++.....+
T Consensus 28 ~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~ 65 (140)
T PRK07353 28 KPVGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQ 65 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44888899999999999999999999999988776554
No 62
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=36.62 E-value=2.4e+02 Score=23.13 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=18.2
Q ss_pred hcHHHHHHHHHHHhHHHHHHHHHHHHhccc
Q psy1651 83 KSLSDVATIVKKSNSKLSELHNELQELESQ 112 (141)
Q Consensus 83 k~r~~Ve~eLs~sN~kL~~L~~eL~eLna~ 112 (141)
.....+..+++.+...++.|+.+|..|.+.
T Consensus 209 ~~~~~~~~E~~~~r~~~~~l~~el~~l~~~ 238 (312)
T PF00038_consen 209 EELESAKEELKELRRQIQSLQAELESLRAK 238 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHhHHHHHHhhhhHhhhhhhccccc
Confidence 335566666666666666666666655443
No 63
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.47 E-value=94 Score=31.43 Aligned_cols=57 Identities=9% Similarity=0.114 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHH
Q psy1651 49 NKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQ 107 (141)
Q Consensus 49 ~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~ 107 (141)
.++.+.-..+++.+..+++..++....++. +|.....++..|.....+++.++.++.
T Consensus 185 ~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~--~~~~~~~ir~~l~~~q~kie~~~~~~~ 241 (1311)
T TIGR00606 185 IKALETLRQVRQTQGQKVQEHQMELKYLKQ--YKEKACEIRDQITSKEAQLESSREIVK 241 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556777777777777776666666 343333344444444444433333333
No 64
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=36.27 E-value=1.7e+02 Score=21.27 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=27.5
Q ss_pred HHHHHHHh-hhhcHHHHHHHHHHHhHHHHHHHHHHHHhcccc
Q psy1651 73 EKLREVAR-DRKSLSDVATIVKKSNSKLSELHNELQELESQI 113 (141)
Q Consensus 73 ENL~rAtt-dkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i 113 (141)
+.+.-+++ +...+..++......|.....++..|..|....
T Consensus 30 ~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~ 71 (151)
T cd00179 30 SQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESN 71 (151)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443 445677778888888888888888877776544
No 65
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=36.04 E-value=1.9e+02 Score=21.88 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=34.1
Q ss_pred hhhhhhhhcCCcccCcccchhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q psy1651 27 VLYELSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVAR 80 (141)
Q Consensus 27 ~~~~L~~~~~~~~~d~~~~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAtt 80 (141)
+++-+..++.| +.+..-|+++++.|...|..--+.++-|+.++.-..
T Consensus 20 il~~lL~~fl~-------kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e 66 (164)
T PRK14473 20 LLIFLLRTFLY-------RPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYE 66 (164)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555 557778899999999999888888888887766543
No 66
>PF03082 MAGSP: Male accessory gland secretory protein; InterPro: IPR004315 The accessory gland of male insects is a genital tissue that secretes many components of the ejaculatory fluid, some of which affect the female's receptivity to courtship and her rate of oviposition. The protein is expressed exclusively in the male accessory glands of adult Drosophila melanogaster. During copulation it is transferred to the female genital tract where it is rapidly altered [].; GO: 0007618 mating, 0005576 extracellular region
Probab=35.83 E-value=29 Score=30.03 Aligned_cols=48 Identities=25% Similarity=0.318 Sum_probs=37.0
Q ss_pred hhhhHHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhcccccc
Q psy1651 68 IKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQIIM 115 (141)
Q Consensus 68 IKeGAENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~v 115 (141)
|||=-+.=-+.+.+|+.--.+|.||..+|++|-+|.-+||...-++-.
T Consensus 151 M~Eie~rK~eIl~~Rq~NldLE~eLndanRkilElNlqlqdaRksvkp 198 (264)
T PF03082_consen 151 MKEIEARKTEILKARQSNLDLELELNDANRKILELNLQLQDARKSVKP 198 (264)
T ss_pred HHHHHHHHHHHHHHHhhCCceeeehhHHHHHHHHHHHHHHHhhcccCC
Confidence 333334444566777777889999999999999999999988777654
No 67
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=35.82 E-value=1.9e+02 Score=21.89 Aligned_cols=38 Identities=32% Similarity=0.361 Sum_probs=31.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh
Q psy1651 45 EALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDR 82 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdk 82 (141)
+.+..-|+++++.|...+..--+.+.-|+.++.-...+
T Consensus 45 ~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~ 82 (156)
T CHL00118 45 KPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQE 82 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999988888888887665444
No 68
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=35.18 E-value=2.1e+02 Score=22.09 Aligned_cols=63 Identities=14% Similarity=0.325 Sum_probs=46.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh--hcHHHHHHHHHHHhHHHHHHHHHHH
Q psy1651 45 EALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDR--KSLSDVATIVKKSNSKLSELHNELQ 107 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdk--k~r~~Ve~eLs~sN~kL~~L~~eL~ 107 (141)
+.+..=++++...|...|..-=+.++-|+.+..-.... +.|......+...+.+-..+.+++.
T Consensus 29 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~ 93 (161)
T COG0711 29 KPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIK 93 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777789999999999999999988888887776654 4556666666666666665555543
No 69
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=35.12 E-value=2.2e+02 Score=25.58 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 85 LSDVATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 85 r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
...+..++...+.++++|+++|++|+..+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 140 IERLLTEDREAERRIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666666666665554443
No 70
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=34.93 E-value=2.5e+02 Score=22.79 Aligned_cols=50 Identities=26% Similarity=0.414 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHhhhhc--------HHHHHHHHHHHhHHHHHHHHHH
Q psy1651 57 HIRKEIRKELKIKEGAEKLREVARDRKS--------LSDVATIVKKSNSKLSELHNEL 106 (141)
Q Consensus 57 ~Ir~eI~KELKIKeGAENL~rAttdkk~--------r~~Ve~eLs~sN~kL~~L~~eL 106 (141)
.++..|.|=|.||.+..++.+-....+. ....+.+++....+|-+|+++.
T Consensus 90 ~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~ 147 (190)
T PF05266_consen 90 FLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQA 147 (190)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566655555544333211 2334566666666666666653
No 71
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=34.79 E-value=1.9e+02 Score=21.43 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=29.6
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh
Q psy1651 45 EALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDR 82 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdk 82 (141)
+.+..=|++++..|...|..--+.++-|+.++.-...+
T Consensus 27 ~pi~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~ 64 (156)
T PRK05759 27 PPIMKALEERQKKIADGLAAAERAKKELELAQAKYEAQ 64 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777788889999988888888888888877665444
No 72
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=34.78 E-value=1.7e+02 Score=25.98 Aligned_cols=71 Identities=23% Similarity=0.269 Sum_probs=40.5
Q ss_pred hhh-hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhc-----------HHHHHHHHHHHhHHHHHHHHHHHHhcccc
Q psy1651 46 ALP-NKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKS-----------LSDVATIVKKSNSKLSELHNELQELESQI 113 (141)
Q Consensus 46 ~~q-~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdkk~-----------r~~Ve~eLs~sN~kL~~L~~eL~eLna~i 113 (141)
++. ..+.+....|++++++-..-.+-.+..+.-+...+. ...+...+....++++.|++++.+|...+
T Consensus 326 g~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l 405 (451)
T PF03961_consen 326 GVDRPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEEL 405 (451)
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 555666666776666543333333333333333221 34555666777788888888888777766
Q ss_pred ccc
Q psy1651 114 IMT 116 (141)
Q Consensus 114 ~v~ 116 (141)
.-.
T Consensus 406 ~~~ 408 (451)
T PF03961_consen 406 ERS 408 (451)
T ss_pred Hhh
Confidence 554
No 73
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=33.47 E-value=2.1e+02 Score=21.63 Aligned_cols=37 Identities=8% Similarity=0.225 Sum_probs=29.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q psy1651 45 EALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARD 81 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttd 81 (141)
+.+..=|+++++.|...|..--+.++-|+.++.-...
T Consensus 31 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~ 67 (164)
T PRK14471 31 KPILGAVKEREDSIKNALASAEEARKEMQNLQADNER 67 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577889999999999999888888888877655433
No 74
>KOG0239|consensus
Probab=33.28 E-value=2.5e+02 Score=27.09 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHh---HHHHHHHHHHHHhcccccc
Q psy1651 85 LSDVATIVKKSN---SKLSELHNELQELESQIIM 115 (141)
Q Consensus 85 r~~Ve~eLs~sN---~kL~~L~~eL~eLna~i~v 115 (141)
.+..+..|.... .....||.+|++|.+.|-|
T Consensus 285 L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV 318 (670)
T KOG0239|consen 285 LESLEENLVEKKKEKEERRKLHNEILELKGNIRV 318 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceE
Confidence 333444444333 5556899999999999887
No 75
>KOG3850|consensus
Probab=32.84 E-value=3.3e+02 Score=25.48 Aligned_cols=70 Identities=30% Similarity=0.489 Sum_probs=39.0
Q ss_pred CcccchhhhhHHHHHHHHHHHHHH-------HHhhhhh--HHHHHHHHh-hhhcHHHHHHHHHHHhH-----------HH
Q psy1651 41 NVAEEALPNKLEELKEHIRKEIRK-------ELKIKEG--AEKLREVAR-DRKSLSDVATIVKKSNS-----------KL 99 (141)
Q Consensus 41 d~~~~~~q~kLe~~ra~Ir~eI~K-------ELKIKeG--AENL~rAtt-dkk~r~~Ve~eLs~sN~-----------kL 99 (141)
-++.+..-+++-..+..+|+.|-| |.--+.| ||-|..+.+ ||.++.++.......|+ ||
T Consensus 28 ~pdga~~~qk~~~~~D~lr~kilk~teqikie~~srd~n~~sylkl~~~ADk~Q~~rIkq~FEkkNqksahtiaqlqkkL 107 (455)
T KOG3850|consen 28 VPDGAKDVQKLKEIKDSLRQKILKRTEQIKIEQSSRDGNVASYLKLVNNADKQQVARIKQVFEKKNQKSAHTIAQLQKKL 107 (455)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHhhccchhhhHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 344566667777777777765543 3332333 556666544 34556666555555444 45
Q ss_pred HHHHHHHHHhc
Q psy1651 100 SELHNELQELE 110 (141)
Q Consensus 100 ~~L~~eL~eLn 110 (141)
.+-|++|.+++
T Consensus 108 ~~y~~rLkeie 118 (455)
T KOG3850|consen 108 EQYHRRLKEIE 118 (455)
T ss_pred HHHHHHHHHHh
Confidence 55555556665
No 76
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=32.45 E-value=1.4e+02 Score=27.26 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhccc
Q psy1651 69 KEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQ 112 (141)
Q Consensus 69 KeGAENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~ 112 (141)
-++|+.|+.--+|+..++.++.|+.....++..|.++|+-|=..
T Consensus 62 l~~a~~~l~~~~D~em~ema~~Ei~~~~~~~~~le~~L~~lLlP 105 (363)
T COG0216 62 LEDAKEMLAEEKDPEMREMAEEEIKELEAKIEELEEELKILLLP 105 (363)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34566666555688899999999999999999999999876443
No 77
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=32.35 E-value=3.2e+02 Score=24.79 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=19.3
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHhcccc
Q psy1651 84 SLSDVATIVKKSNSKLSELHNELQELESQI 113 (141)
Q Consensus 84 ~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i 113 (141)
..+.|+.|-..-..+|+.|..+|.+|+..+
T Consensus 365 i~~~v~~Er~~~~~~l~~~~~~~~~le~~~ 394 (582)
T PF09731_consen 365 IKEKVEQERNGRLAKLAELNSRLKALEEAL 394 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666667777777777666433
No 78
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=31.59 E-value=3e+02 Score=22.84 Aligned_cols=48 Identities=13% Similarity=0.210 Sum_probs=33.1
Q ss_pred hhhhhhhhcCCcccCcccchhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q psy1651 27 VLYELSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARD 81 (141)
Q Consensus 27 ~~~~L~~~~~~~~~d~~~~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttd 81 (141)
+++-|..++.+ ..+..=++++++.|...|..-=+.++-|+.+++-...
T Consensus 17 ILv~lL~~fl~-------kPi~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~ 64 (250)
T PRK14474 17 ILVYLLRRFLY-------KPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQ 64 (250)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555 4466778888888888888888877777776665444
No 79
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=30.91 E-value=3e+02 Score=22.49 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=34.2
Q ss_pred hhhhhhhhhcCCcccCcccchhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q psy1651 26 PVLYELSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARD 81 (141)
Q Consensus 26 ~~~~~L~~~~~~~~~d~~~~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttd 81 (141)
-+++-+..++.| +.+..=++++++.|...|..--+.+.-|+.++.-...
T Consensus 16 lil~~lL~kfl~-------kPi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~ 64 (246)
T TIGR03321 16 LILVWLLKRFLY-------RPILDAMDAREKKIAGELADADTKKREAEQERREYEE 64 (246)
T ss_pred HHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666 5577778888888888888887777777776654333
No 80
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.74 E-value=83 Score=20.25 Aligned_cols=17 Identities=24% Similarity=0.579 Sum_probs=7.8
Q ss_pred HHHHhHHHHHHHHHHHH
Q psy1651 92 VKKSNSKLSELHNELQE 108 (141)
Q Consensus 92 Ls~sN~kL~~L~~eL~e 108 (141)
++..+++++.++.|++.
T Consensus 50 ~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 50 IRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444444445544444
No 81
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=30.62 E-value=3.4e+02 Score=23.10 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhh---------hcHHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 53 ELKEHIRKEIRKELKIKEGAEKLREVARDR---------KSLSDVATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 53 ~~ra~Ir~eI~KELKIKeGAENL~rAttdk---------k~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
++...|+.+|..=+...++-++-..++..+ ..++.++.++...+.....+..+..+|-+.++
T Consensus 103 ~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~ 173 (239)
T COG1579 103 ERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444456666666666666666655555544 22566666666666666666666665555444
No 82
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=30.49 E-value=2.9e+02 Score=24.32 Aligned_cols=22 Identities=9% Similarity=0.265 Sum_probs=9.9
Q ss_pred HHHHhHHHHHHHHHHHHhcccc
Q psy1651 92 VKKSNSKLSELHNELQELESQI 113 (141)
Q Consensus 92 Ls~sN~kL~~L~~eL~eLna~i 113 (141)
+.....++..|+.++.++++++
T Consensus 238 ~~~~~~~i~~l~~~i~~~~~~~ 259 (457)
T TIGR01000 238 LATIQQQIDQLQKSIASYQVQK 259 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555444444433
No 83
>PF07374 DUF1492: Protein of unknown function (DUF1492); InterPro: IPR010861 This entry is represented by Streptococcus phage 7201, Orf19. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several hypothetical, highly conserved Streptococcal and related phage proteins. The function of this family is unknown.
Probab=30.35 E-value=2e+02 Score=20.40 Aligned_cols=57 Identities=23% Similarity=0.288 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhh-------------cHHHHHHHHHHHhHHHHHHHHH
Q psy1651 49 NKLEELKEHIRKEIRKELKIKEGAEKLREVARDRK-------------SLSDVATIVKKSNSKLSELHNE 105 (141)
Q Consensus 49 ~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdkk-------------~r~~Ve~eLs~sN~kL~~L~~e 105 (141)
-++-..++.|.++|.+-.+.|....++...+.|.+ .-.+|..+|..|.+.+-.+|.+
T Consensus 25 v~~i~~~e~I~~~i~~li~~k~ei~~~I~~l~d~~~r~iL~~~Yi~~~~~~~I~~~l~~S~~t~yr~~~~ 94 (100)
T PF07374_consen 25 VKIIDLKEEIEREIDELIKEKLEIRRAINKLEDPDERLILRMRYINKLTWEQIAEELNISRRTYYRIHKK 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 45667788899999999888888888887777753 3567888888888877777654
No 84
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=30.26 E-value=3.5e+02 Score=23.61 Aligned_cols=9 Identities=56% Similarity=0.708 Sum_probs=4.2
Q ss_pred hhhhHHHHH
Q psy1651 47 LPNKLEELK 55 (141)
Q Consensus 47 ~q~kLe~~r 55 (141)
++++|++..
T Consensus 171 LR~~L~Ei~ 179 (269)
T PF05278_consen 171 LRSKLEEIL 179 (269)
T ss_pred HHHHHHHHH
Confidence 444455443
No 85
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=30.26 E-value=2.6e+02 Score=21.71 Aligned_cols=38 Identities=32% Similarity=0.330 Sum_probs=28.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh
Q psy1651 45 EALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDR 82 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdk 82 (141)
..+..=|+++++.|...|..--+.++-|+.++.-...+
T Consensus 47 kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~ 84 (184)
T CHL00019 47 GVLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARAR 84 (184)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677788999999988888877777777776654443
No 86
>KOG2150|consensus
Probab=30.24 E-value=1.7e+02 Score=28.23 Aligned_cols=63 Identities=22% Similarity=0.339 Sum_probs=47.4
Q ss_pred HHHHHHHHHHh-hhhhHHHH------HHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCCC
Q psy1651 57 HIRKEIRKELK-IKEGAEKL------REVARDRKSLSDVATIVKKSNSKLSELHNELQELESQIIMTQGQ 119 (141)
Q Consensus 57 ~Ir~eI~KELK-IKeGAENL------~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~v~q~~ 119 (141)
.|.++|.|=|| |.||.|=. +..+++--+++..+..|+.==.||+.|+.+|---.++-++.+.+
T Consensus 5 KLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~n~sqkeK~e~DLKkEIKKLQRlRdQIKtW~ss~dIKDK~ 74 (575)
T KOG2150|consen 5 KLQQEIDRCLKKVDEGVEIFDEIYEKLHSANNVSQKEKLESDLKKEIKKLQRLRDQIKTWQSSSDIKDKD 74 (575)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHH
Confidence 45566666665 89997633 22345778899999999999999999999998777776666553
No 87
>PRK10788 periplasmic folding chaperone; Provisional
Probab=29.64 E-value=2e+02 Score=26.29 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhhh---hhHHHHHHHHhhhh
Q psy1651 51 LEELKEHIRKEIRKELKIK---EGAEKLREVARDRK 83 (141)
Q Consensus 51 Le~~ra~Ir~eI~KELKIK---eGAENL~rAttdkk 83 (141)
+++.|+.|+..++.+.+.+ +=|++++.++...+
T Consensus 481 leevk~~i~~~l~~~k~~~~~~~~a~~ll~~l~~g~ 516 (623)
T PRK10788 481 LAQVRDQVTELVKRQKAEQQAKVDAEKLLAALKAGK 516 (623)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5556666666655554433 23677777666643
No 88
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=29.47 E-value=3.8e+02 Score=24.16 Aligned_cols=45 Identities=7% Similarity=0.194 Sum_probs=29.9
Q ss_pred hhhhhhhhhcCCcccCcccchhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy1651 26 PVLYELSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLRE 77 (141)
Q Consensus 26 ~~~~~L~~~~~~~~~d~~~~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~r 77 (141)
-+++-+..++.| +.+..-|+++++.|++.|..-=+.+.-++.+..
T Consensus 12 lIl~~lL~kfl~-------~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~ 56 (445)
T PRK13428 12 AVIVFLVWRFVV-------PPVRRLMAARQDTVRQQLAESATAADRLAEADQ 56 (445)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666 446777888888888888776666666655543
No 89
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=29.40 E-value=85 Score=27.54 Aligned_cols=17 Identities=6% Similarity=0.032 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy1651 51 LEELKEHIRKEIRKELK 67 (141)
Q Consensus 51 Le~~ra~Ir~eI~KELK 67 (141)
++...+.+++++.+|..
T Consensus 280 l~~qi~~l~~~l~~~~~ 296 (498)
T TIGR03007 280 TKREIAQLEEQKEEEGS 296 (498)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 33444455555555543
No 90
>PHA02562 46 endonuclease subunit; Provisional
Probab=29.39 E-value=3.4e+02 Score=23.95 Aligned_cols=28 Identities=7% Similarity=0.060 Sum_probs=13.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhH
Q psy1651 45 EALPNKLEELKEHIRKEIRKELKIKEGA 72 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELKIKeGA 72 (141)
+.....+.+.++.|+.++..--....+.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~ 325 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDEL 325 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555444444433
No 91
>PF13734 Inhibitor_I69: Spi protease inhibitor; PDB: 1PVJ_A 1DKI_D 2UZJ_A 2JTC_A 4D8E_A 4D8I_A 4D8B_A.
Probab=29.20 E-value=63 Score=23.72 Aligned_cols=52 Identities=25% Similarity=0.454 Sum_probs=26.3
Q ss_pred CCeEEeec-CceeEEEecCCcccchhhhhhhhhcCCcccCcccchhhhhHHHHHHHHH
Q psy1651 3 NPVYLVQN-DRYYWISSEGDYIRHPVLYELSHKYGFITENVAEEALPNKLEELKEHIR 59 (141)
Q Consensus 3 ~~~~~~~~-~~~~~~~~~~d~~~~~~~~~L~~~~~~~~~d~~~~~~q~kLe~~ra~Ir 59 (141)
.|.|++.. +.-|-|.. ||.+-+||| .-|..=.| |.....++.-|+..+++|+
T Consensus 41 ~~~YI~N~~~~GFVIVS-gDdr~~~IL-aYS~~G~f---d~~~~n~~~~l~~y~~~i~ 93 (96)
T PF13734_consen 41 TPYYIFNDNNKGFVIVS-GDDRMGPIL-AYSDEGSF---DTNNANVRPGLQAYLEQIK 93 (96)
T ss_dssp SSEEEEEETTS-EEEEE-SBTTS-SEE-EEESSS-------T-HHHHHHHHHHHHHHC
T ss_pred CcEEEEEcCCCEEEEEE-CCCCcccee-EEcCCCCc---CccchhHHHHHHHHHHHhh
Confidence 47888776 45555554 999999994 22332333 3222335555555555543
No 92
>PHA03161 hypothetical protein; Provisional
Probab=29.00 E-value=1.6e+02 Score=23.74 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=22.8
Q ss_pred hhhhhhhhcCCcccCcccchhhhhHHHHHHHHHH--HHHHHHhh
Q psy1651 27 VLYELSHKYGFITENVAEEALPNKLEELKEHIRK--EIRKELKI 68 (141)
Q Consensus 27 ~~~~L~~~~~~~~~d~~~~~~q~kLe~~ra~Ir~--eI~KELKI 68 (141)
+..++...+|= + -+-+.++.+.-+..||. ..+++-.|
T Consensus 21 ~aVS~fDRFG~---~--s~lF~~Qf~~t~~~lr~~~~~~~~~~i 59 (150)
T PHA03161 21 ASVSLFDRFGE---K--NCIFLHQLDHTKKSLIKHENLKKQKSI 59 (150)
T ss_pred hhhhHHhhcCC---c--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666664 2 36678888888877764 34444444
No 93
>KOG0994|consensus
Probab=28.98 E-value=1.4e+02 Score=31.79 Aligned_cols=50 Identities=24% Similarity=0.322 Sum_probs=38.6
Q ss_pred HHhhhhhHHHHHHHHhhh-hcHHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 65 ELKIKEGAEKLREVARDR-KSLSDVATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 65 ELKIKeGAENL~rAttdk-k~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
.-++++-|+.|+-.+.+| +-...++.++-.-++.|.++..+|..|++++.
T Consensus 1691 Ae~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~ 1741 (1758)
T KOG0994|consen 1691 AEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVE 1741 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHH
Confidence 446778888888888887 44567777777788888888888888888764
No 94
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=28.96 E-value=2.4e+02 Score=20.92 Aligned_cols=62 Identities=23% Similarity=0.352 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHH-----HhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhccc
Q psy1651 51 LEELKEHIRKEIRKELKIKEGAEKLREV-----ARDRKSLSDVATIVKKSNSKLSELHNELQELESQ 112 (141)
Q Consensus 51 Le~~ra~Ir~eI~KELKIKeGAENL~rA-----ttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~ 112 (141)
.+.....++.++..+-++=..|++=++. ..+-+....+..++......+..|+.+.+.....
T Consensus 22 ~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~ 88 (132)
T PF07926_consen 22 AEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAE 88 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677777777777777765442 3344566677777777777777777776655443
No 95
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=28.70 E-value=2e+02 Score=19.92 Aligned_cols=40 Identities=10% Similarity=0.222 Sum_probs=22.2
Q ss_pred hhhhhHHHHHHHHhhh------hcHHHHHHHHHHHhHHHHHHHHHH
Q psy1651 67 KIKEGAEKLREVARDR------KSLSDVATIVKKSNSKLSELHNEL 106 (141)
Q Consensus 67 KIKeGAENL~rAttdk------k~r~~Ve~eLs~sN~kL~~L~~eL 106 (141)
.+++.++.|.+.+.+. ..|..+...+.....++.+..+++
T Consensus 9 ~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~ 54 (94)
T PF05957_consen 9 QLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQA 54 (94)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666665554 335555555555555555554444
No 96
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=28.67 E-value=2.6e+02 Score=21.07 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=26.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy1651 45 EALPNKLEELKEHIRKEIRKELKIKEGAEKLREVA 79 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAt 79 (141)
+.+..=|+++++.|...|..--+.++-|+.++.-.
T Consensus 28 kpi~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~ 62 (159)
T PRK13461 28 DKIKAVIDSRQSEIDNKIEKADEDQKKARELKLKN 62 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777788999999988888777777777776543
No 97
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=28.36 E-value=4e+02 Score=24.33 Aligned_cols=68 Identities=22% Similarity=0.249 Sum_probs=48.6
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh-h----hcHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q psy1651 44 EEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARD-R----KSLSDVATIVKKSNSKLSELHNELQELES 111 (141)
Q Consensus 44 ~~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttd-k----k~r~~Ve~eLs~sN~kL~~L~~eL~eLna 111 (141)
-.....+|+..|+.++..|.+--+-|+=.++++.-... . .+|..+...|+.--..|..+...|..|.+
T Consensus 198 ~~~a~~~l~~E~~~~~~di~~~~~A~~~l~~~~~~V~~d~~lT~~Qk~~l~d~l~~Y~~~l~~i~~qL~~L~~ 270 (379)
T PF04518_consen 198 YFMALAKLEKEREQIRRDIKSCERAKAVLNKQLARVKADAKLTSEQKSELLDSLNNYKDNLNAISNQLSLLQS 270 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999988888877777765443 3 34666666666666666666666665554
No 98
>PLN02678 seryl-tRNA synthetase
Probab=28.33 E-value=3.4e+02 Score=24.83 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=36.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhh--h--hhHHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 45 EALPNKLEELKEHIRKEIRKELKI--K--EGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELKI--K--eGAENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
..++.+++.+|+.. .++.|+++. + +.++.+.. .-..+..+++....++..+.++|.++-.+++
T Consensus 43 r~l~~~~e~lr~er-N~~sk~I~~~k~~~~~~~~l~~------~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iP 109 (448)
T PLN02678 43 RQRQFELDSLRKEF-NKLNKEVAKLKIAKEDATELIA------ETKELKKEITEKEAEVQEAKAALDAKLKTIG 109 (448)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhhCCCcHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45566666666653 356666654 2 22222221 2235566777777777778887777665554
No 99
>KOG1924|consensus
Probab=28.20 E-value=2.2e+02 Score=29.17 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=52.5
Q ss_pred hhhhcCCcccCcccchhhhhHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHhhh-hcHHHHHHHHHHHhHHHHHHHHHH
Q psy1651 31 LSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKE---GAEKLREVARDR-KSLSDVATIVKKSNSKLSELHNEL 106 (141)
Q Consensus 31 L~~~~~~~~~d~~~~~~q~kLe~~ra~Ir~eI~KELKIKe---GAENL~rAttdk-k~r~~Ve~eLs~sN~kL~~L~~eL 106 (141)
+.|+.|. |+ +-..+.+++---+.|-+.+.-+-|.++ -|+-|-+-...- ..++..+.||..-..||.+|..+.
T Consensus 436 vlHr~~~---DP-df~yr~~l~id~~~liD~~vdkak~eeseqkA~e~~kk~~ke~ta~qe~qael~k~e~Ki~~l~ae~ 511 (1102)
T KOG1924|consen 436 VLHRTGM---DP-DFKYRFRLDIDLTELIDKMVDKAKAEESEQKAAELEKKFDKELTARQEAQAELQKHEEKIKLLEAEK 511 (1102)
T ss_pred HHhcCCC---CC-CcchhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCchhh
Confidence 4556665 53 345666676444444444444444443 233333222111 346777888999999999999999
Q ss_pred HHhcccccccCCCC
Q psy1651 107 QELESQIIMTQGQT 120 (141)
Q Consensus 107 ~eLna~i~v~q~~~ 120 (141)
+.|.+...+...+.
T Consensus 512 ~al~s~~~~~~~~~ 525 (1102)
T KOG1924|consen 512 QALSSPSQLLPIDG 525 (1102)
T ss_pred hhccCcccCCCCCC
Confidence 99999887764444
No 100
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=28.14 E-value=2.9e+02 Score=27.81 Aligned_cols=67 Identities=4% Similarity=0.009 Sum_probs=44.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhcccccc
Q psy1651 47 LPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQIIM 115 (141)
Q Consensus 47 ~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~v 115 (141)
-..||+..++.|.++|.+=.+.-.+.+-+.+| .....+.....+.....+|+.|.+.|..|...-.+
T Consensus 843 e~~rLekel~kl~Kel~kl~~~L~n~~f~~ka--p~~~veka~~kl~~~~~~l~~le~~l~~L~~~~~~ 909 (1052)
T PRK14900 843 ETARVDKEIGKVDQDLAVLERKLQNPSFVQNA--PPAVVEKDRARAEELREKRGKLEAHRAMLSGSEAN 909 (1052)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcCchhhhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34567778888887777766666665544555 44444555555567788888888888888774433
No 101
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=28.02 E-value=3e+02 Score=23.91 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=13.5
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q psy1651 84 SLSDVATIVKKSNSKLSELHNELQELES 111 (141)
Q Consensus 84 ~r~~Ve~eLs~sN~kL~~L~~eL~eLna 111 (141)
.+..+...+...+.+++++..+|++++.
T Consensus 233 ~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 233 ELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555544443
No 102
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=27.89 E-value=3.4e+02 Score=22.22 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH
Q psy1651 53 ELKEHIRKEIRKELKIKEGAEKLREV 78 (141)
Q Consensus 53 ~~ra~Ir~eI~KELKIKeGAENL~rA 78 (141)
...+.++.++..+.+.+..+|.-...
T Consensus 82 ~e~~~~r~k~e~e~~~~~~le~el~~ 107 (312)
T PF00038_consen 82 EELEDLRRKYEEELAERKDLEEELES 107 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33345666777777777777655444
No 103
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=27.85 E-value=3.7e+02 Score=22.61 Aligned_cols=68 Identities=22% Similarity=0.229 Sum_probs=43.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcHHHHH--HHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 46 ALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVA--TIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 46 ~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdkk~r~~Ve--~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
-++.-.+++...||+.=.--|++=-.--||.+-++-+ .-.++. ..|+.+|.||++=.+||.+|-.-.+
T Consensus 13 ll~~skeel~~rLR~~E~ek~~~m~~~g~lm~evNrr-lQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLD 82 (195)
T PF10226_consen 13 LLRWSKEELVRRLRRAEAEKMSLMVEHGRLMKEVNRR-LQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLD 82 (195)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3344477777777765555455444455555555443 222222 4799999999999999998876554
No 104
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=27.50 E-value=1.2e+02 Score=23.52 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=19.4
Q ss_pred HHHhHHHHHHHHHHHHhcccccccCCCCCCCCC
Q psy1651 93 KKSNSKLSELHNELQELESQIIMTQGQTVTSPT 125 (141)
Q Consensus 93 s~sN~kL~~L~~eL~eLna~i~v~q~~~~~s~~ 125 (141)
.+..+++.+|.+++..|++.+..-..+-+.+-|
T Consensus 36 a~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKp 68 (112)
T PF07439_consen 36 ASMHRRLDELVERVTTLESSVSTLKADVSEMKP 68 (112)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccc
Confidence 445677777777777777666554444333333
No 105
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.23 E-value=2.8e+02 Score=22.39 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHh
Q psy1651 56 EHIRKEIRKELKIKEGAEKLREVAR 80 (141)
Q Consensus 56 a~Ir~eI~KELKIKeGAENL~rAtt 80 (141)
...-+.+.+.+-.++|+|++..+.+
T Consensus 148 ~~~l~r~~~~~~~~~~~~~~e~~~t 172 (219)
T PF07569_consen 148 GRFLQRMIKASLMKEGFENWEQAVT 172 (219)
T ss_pred hhHHHHhhhhhhcccCcHHHHHHHH
Confidence 3444567899999999999998654
No 106
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=27.18 E-value=2.5e+02 Score=25.62 Aligned_cols=32 Identities=47% Similarity=0.558 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh
Q psy1651 50 KLEELKEHIRKEIRKELKIKEGAEKLREVARDR 82 (141)
Q Consensus 50 kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdk 82 (141)
-|+++|+.||.+|.++++-+.- +++++++-+.
T Consensus 261 tL~~Lk~~~r~~le~~~~~~~~-~~~~~~~~~~ 292 (441)
T COG0544 261 TLEELKEKLRKNLERELKEATL-EKRKEQLLDA 292 (441)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 5899999999999999998877 8888877766
No 107
>PLN02678 seryl-tRNA synthetase
Probab=27.08 E-value=2.3e+02 Score=25.95 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=24.7
Q ss_pred hcHHHHHHHHHHHhHHHHHHHHHHHHhcccccc
Q psy1651 83 KSLSDVATIVKKSNSKLSELHNELQELESQIIM 115 (141)
Q Consensus 83 k~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~v 115 (141)
...+.+-.+.+....+|..|..++.+++..+.-
T Consensus 71 ~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 71 EDATELIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667778888888888888888887764
No 108
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=26.74 E-value=2.5e+02 Score=26.25 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=10.9
Q ss_pred chhhhhHHHHHHHHHHHHHH
Q psy1651 45 EALPNKLEELKEHIRKEIRK 64 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~K 64 (141)
..++.+++++++.|.+++.+
T Consensus 319 ~~l~~qi~~l~~~i~~e~~~ 338 (754)
T TIGR01005 319 VAAKSSLADLDAQIRSELQK 338 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555666655555554
No 109
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=26.71 E-value=1e+02 Score=29.76 Aligned_cols=32 Identities=13% Similarity=0.337 Sum_probs=29.1
Q ss_pred hcHHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 83 KSLSDVATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 83 k~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
.++..+...|+.-..+|+++-.++..++.++-
T Consensus 685 ~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~~ 716 (717)
T PF10168_consen 685 SQKRTIKEILKQQGEEIDELVKQIKNIKKIVN 716 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 57889999999999999999999999988764
No 110
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=26.51 E-value=4.3e+02 Score=25.29 Aligned_cols=7 Identities=29% Similarity=0.781 Sum_probs=4.1
Q ss_pred CceeEEE
Q psy1651 11 DRYYWIS 17 (141)
Q Consensus 11 ~~~~~~~ 17 (141)
|.+|-+|
T Consensus 87 ~e~Yqfc 93 (546)
T PF07888_consen 87 DEFYQFC 93 (546)
T ss_pred CCeEEEE
Confidence 4566665
No 111
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=26.37 E-value=22 Score=26.13 Aligned_cols=33 Identities=42% Similarity=0.557 Sum_probs=1.3
Q ss_pred hcHHHHHHHHHHHhHHHHHHHHHHHHhcccccc
Q psy1651 83 KSLSDVATIVKKSNSKLSELHNELQELESQIIM 115 (141)
Q Consensus 83 k~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~v 115 (141)
|.....+.++......++.|+.++++|+....-
T Consensus 13 K~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~~ 45 (118)
T PF08286_consen 13 KELSDLESELESLQSELEELKEELEELEEQEVE 45 (118)
T ss_dssp ------------------------------HT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 556778889999999999999999988887655
No 112
>PF14280 DUF4365: Domain of unknown function (DUF4365)
Probab=25.58 E-value=79 Score=22.64 Aligned_cols=24 Identities=42% Similarity=0.665 Sum_probs=18.5
Q ss_pred CCCeEEe----ecCceeEEEecCCcccc
Q psy1651 2 NNPVYLV----QNDRYYWISSEGDYIRH 25 (141)
Q Consensus 2 ~~~~~~~----~~~~~~~~~~~~d~~~~ 25 (141)
+-||+|| .+++-||+.+++.++..
T Consensus 82 ~~PvilV~~~~~~~~~yW~~l~~~~~~~ 109 (138)
T PF14280_consen 82 PVPVILVLVDPDSDCAYWVSLKGYPINS 109 (138)
T ss_pred CCCEEEEEEeCCCCEEEEEEcccCcccC
Confidence 4588887 56789999998887554
No 113
>KOG2211|consensus
Probab=25.42 E-value=2.1e+02 Score=28.49 Aligned_cols=64 Identities=22% Similarity=0.316 Sum_probs=42.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhc---HHHHHHHHHHHhHHHHHHHHHHHHhcccccc
Q psy1651 45 EALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKS---LSDVATIVKKSNSKLSELHNELQELESQIIM 115 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdkk~---r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~v 115 (141)
.+.+.+..+++..|+ +||.---+.++..-.|.+ |-+|+..|=...-++..|...|+.|+...++
T Consensus 117 ~sl~~~v~~lqs~i~-------riknd~~epyk~i~~kt~vl~rLhva~~lLrrsgr~l~LskkL~~l~~~~~~ 183 (797)
T KOG2211|consen 117 RSLLVKVAELQSEIK-------RIKNDNKEPYKIIWLKTMVLTRLHVAENLLRRSGRALELSKKLASLNSSMVV 183 (797)
T ss_pred HHHHHHHHHHHHHHH-------HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCH
Confidence 445555555555555 688888888888777743 5555555544555666799999988876654
No 114
>PLN02943 aminoacyl-tRNA ligase
Probab=25.33 E-value=2.4e+02 Score=28.00 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh--------hcHHHHHHHHHHHhHHHHHHHHHHHHhcccccc
Q psy1651 51 LEELKEHIRKEIRKELKIKEGAEKLREVARDR--------KSLSDVATIVKKSNSKLSELHNELQELESQIIM 115 (141)
Q Consensus 51 Le~~ra~Ir~eI~KELKIKeGAENL~rAttdk--------k~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~v 115 (141)
++..++.|.++|.|--|=.+++++.+ +|. ...+.....|.....+|+.|++.|..|.+...+
T Consensus 887 ~~~E~~rL~K~l~klekei~~~~~kL---sN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l~~~~~~ 956 (958)
T PLN02943 887 ISAEVERLSKRLSKMQTEYDALAARL---SSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLKSTSLV 956 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---CCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 44555556666655444444444443 333 234445555667778888888888888764443
No 115
>KOG1029|consensus
Probab=25.28 E-value=3.3e+02 Score=27.98 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 85 LSDVATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 85 r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
..+...+|+.+|.++++|-..|++..+.+.
T Consensus 439 ~~ql~~eletLn~k~qqls~kl~Dvr~~~t 468 (1118)
T KOG1029|consen 439 KKQLQQELETLNFKLQQLSGKLQDVRVDIT 468 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhheeccc
Confidence 445677888888888888888887766654
No 116
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=25.26 E-value=1.4e+02 Score=21.25 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=25.9
Q ss_pred hhhhcHHHHHHHHHHHhHHHHHHHHHHHHhccccccc
Q psy1651 80 RDRKSLSDVATIVKKSNSKLSELHNELQELESQIIMT 116 (141)
Q Consensus 80 tdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~v~ 116 (141)
...+.+.....++......|..|+.++..+...+.-+
T Consensus 71 ~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 71 EEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335577777778888888888888877776665543
No 117
>KOG4403|consensus
Probab=25.00 E-value=2.1e+02 Score=27.36 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=25.7
Q ss_pred HHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhcccccccC
Q psy1651 77 EVARDRKSLSDVATIVKKSNSKLSELHNELQELESQIIMTQ 117 (141)
Q Consensus 77 rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~v~q 117 (141)
+|-+=+..|+-|+.+.+. ..|++|+.+|...+-......
T Consensus 291 ea~rl~elreg~e~e~~r--kelE~lR~~L~kAEkele~nS 329 (575)
T KOG4403|consen 291 EAPRLSELREGVENETSR--KELEQLRVALEKAEKELEANS 329 (575)
T ss_pred hhhhhhhhhcchhHHHHH--HHHHHHHHHHHHHHHHHHhcc
Confidence 444445567777777765 578888888886666555544
No 118
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=24.95 E-value=86 Score=26.63 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=20.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhcc
Q psy1651 88 VATIVKKSNSKLSELHNELQELES 111 (141)
Q Consensus 88 Ve~eLs~sN~kL~~L~~eL~eLna 111 (141)
-|.-|+..+.||++|+.+|+..++
T Consensus 53 QE~AL~~a~~ri~eLe~ql~q~~~ 76 (247)
T PF09849_consen 53 QEQALKQAQARIQELEAQLQQAQA 76 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 367899999999999999977544
No 119
>PRK00846 hypothetical protein; Provisional
Probab=24.88 E-value=2.6e+02 Score=19.94 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=27.5
Q ss_pred HHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCCC
Q psy1651 73 EKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQIIMTQGQ 119 (141)
Q Consensus 73 ENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~v~q~~ 119 (141)
|.+.+.+++--. .-..++....++|+.|.++|.++.++......+
T Consensus 26 e~tIe~LN~~v~--~qq~~I~~L~~ql~~L~~rL~~~~~s~~~~~~d 70 (77)
T PRK00846 26 EQALTELSEALA--DARLTGARNAELIRHLLEDLGKVRSTLFADPAD 70 (77)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccccCCCCCC
Confidence 444444443322 233455566778888888888888777655544
No 120
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=24.51 E-value=4.9e+02 Score=23.27 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHhcccccc
Q psy1651 84 SLSDVATIVKKSNSKLSELHNELQELESQIIM 115 (141)
Q Consensus 84 ~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~v 115 (141)
..+.+-.+.+....+|..|.+++.+++..+.-
T Consensus 67 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 67 DAEALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888899999999999988888774
No 121
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=24.38 E-value=2.4e+02 Score=19.39 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhc
Q psy1651 85 LSDVATIVKKSNSKLSELHNELQELE 110 (141)
Q Consensus 85 r~~Ve~eLs~sN~kL~~L~~eL~eLn 110 (141)
|..+...|...-..+.+|+.|++.|.
T Consensus 35 Rd~~~~~l~~a~~e~~~Lk~E~e~L~ 60 (69)
T PF14197_consen 35 RDSAERQLGDAYEENNKLKEENEALR 60 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555443
No 122
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=24.23 E-value=1.8e+02 Score=20.47 Aligned_cols=32 Identities=31% Similarity=0.416 Sum_probs=13.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q psy1651 47 LPNKLEELKEHIRKEIRKELKIKEGAEKLREV 78 (141)
Q Consensus 47 ~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rA 78 (141)
+..=|+.+++.|+..+..--+.+.-|+.+..-
T Consensus 24 i~~~l~~R~~~I~~~~~~a~~~~~ea~~~~~e 55 (132)
T PF00430_consen 24 IKKFLDERKAKIQSELEEAEELKEEAEQLLAE 55 (132)
T ss_dssp HHHHCS--S-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33334444555555554444444444444443
No 123
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=24.09 E-value=3.4e+02 Score=24.86 Aligned_cols=61 Identities=25% Similarity=0.392 Sum_probs=35.5
Q ss_pred cCCcccchhhhhhhhhcCCcccCcccchhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhc
Q psy1651 19 EGDYIRHPVLYELSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKS 84 (141)
Q Consensus 19 ~~d~~~~~~~~~L~~~~~~~~~d~~~~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdkk~ 84 (141)
.+|-.-+.-...|-.|||+...+....+..+ .-=..++..|++ |+++.|.+||++..+...
T Consensus 132 ~~DGGqw~m~~~li~KYGvVPk~~~pet~~s---~~t~~~n~~L~~--kLr~~a~~lr~~~~~~~~ 192 (437)
T cd00585 132 QNDGGQWDMLVNLIEKYGLVPKSVMPESFNS---ENSRRLNYLLNR--KLREDALELRKLVAKGAS 192 (437)
T ss_pred cCCCCchHHHHHHHHHcCCCcccccCCCcCc---cchHHHHHHHHH--HHHHHHHHHHHHHhcCCc
Confidence 3555666677799999999754432112222 111233333433 667788888888766643
No 124
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=24.07 E-value=3.3e+02 Score=20.84 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=31.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh
Q psy1651 45 EALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDR 82 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdk 82 (141)
+.+..=|+++++.|...|..--+.|.-|+.++.-...+
T Consensus 33 ~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~ 70 (167)
T PRK14475 33 KALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAE 70 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777899999999999999888888888887765554
No 125
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=23.60 E-value=3.8e+02 Score=21.68 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=12.2
Q ss_pred hhhcCCcccCcccchhhhhHHHHHH
Q psy1651 32 SHKYGFITENVAEEALPNKLEELKE 56 (141)
Q Consensus 32 ~~~~~~~~~d~~~~~~q~kLe~~ra 56 (141)
.++.|| | ...+|.||..+-.
T Consensus 81 LE~~GF---n--V~~l~~RL~kLL~ 100 (190)
T PF05266_consen 81 LEEHGF---N--VKFLRSRLNKLLS 100 (190)
T ss_pred HHHcCC---c--cHHHHHHHHHHHH
Confidence 345666 5 4667777766544
No 126
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.38 E-value=3.5e+02 Score=24.96 Aligned_cols=66 Identities=29% Similarity=0.407 Sum_probs=33.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 45 EALPNKLEELKEHIRKEIRKELK--IKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELK--IKeGAENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
..++.+++.+++ .|.++.|++. ++.|-+ .+..=......+..+|+..+..+.++..+++.+-..++
T Consensus 39 r~~~~~~e~l~~-~rn~~sk~ig~~~~~~~~---~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ip 106 (429)
T COG0172 39 RKLLRELEELQA-ERNELSKEIGRALKRGED---DAEELIAEVKELKEKLKELEAALDELEAELDTLLLTIP 106 (429)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhhccch---hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCC
Confidence 344445555543 3445566653 232222 11111222345566667777777777777766655544
No 127
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=23.30 E-value=4.8e+02 Score=22.40 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=11.5
Q ss_pred cchhhhhHHHHHHHHHHHHH
Q psy1651 44 EEALPNKLEELKEHIRKEIR 63 (141)
Q Consensus 44 ~~~~q~kLe~~ra~Ir~eI~ 63 (141)
-..++.++++.++.|.++|.
T Consensus 284 v~~l~~~i~~l~~~l~~e~~ 303 (444)
T TIGR03017 284 YKRAQAEINSLKSQLNAEIK 303 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666665554
No 128
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=23.23 E-value=3.3e+02 Score=20.48 Aligned_cols=37 Identities=16% Similarity=0.368 Sum_probs=29.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh
Q psy1651 46 ALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDR 82 (141)
Q Consensus 46 ~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdk 82 (141)
.+..=|+++++.|...|..--+.++-|+.++.-...+
T Consensus 26 pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~ 62 (159)
T PRK09173 26 MIARSLDARADRIKNELAEARRLREEAQQLLAEYQRK 62 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667799999999999998888888888877665544
No 129
>KOG3433|consensus
Probab=23.22 E-value=4.6e+02 Score=22.17 Aligned_cols=44 Identities=16% Similarity=0.244 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy1651 57 HIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQEL 109 (141)
Q Consensus 57 ~Ir~eI~KELKIKeGAENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eL 109 (141)
.+++.|.++=+-+++.|+--. .+..+|++.-..++.|+++|.-+
T Consensus 99 tl~e~~en~K~~~e~tEer~~---------el~kklnslkk~~e~lr~el~k~ 142 (203)
T KOG3433|consen 99 TLGESIENRKAGREETEERTD---------ELTKKLNSLKKILESLRWELAKI 142 (203)
T ss_pred HHHHHHHHHHhhhhhhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554332 45555665555677777776633
No 130
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=23.22 E-value=4.1e+02 Score=23.57 Aligned_cols=41 Identities=20% Similarity=0.354 Sum_probs=28.3
Q ss_pred hhhhhHHHHHHHHhhh--h---cHHHHHHHHHHHhHHHHHHHHHHH
Q psy1651 67 KIKEGAEKLREVARDR--K---SLSDVATIVKKSNSKLSELHNELQ 107 (141)
Q Consensus 67 KIKeGAENL~rAttdk--k---~r~~Ve~eLs~sN~kL~~L~~eL~ 107 (141)
++++-|.+|...|..- + .....-.+|+.+|.++..|.++|.
T Consensus 178 ~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa 223 (306)
T PF04849_consen 178 QLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELA 223 (306)
T ss_pred HHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHH
Confidence 5666677777665553 2 233445888888998888888876
No 131
>KOG3478|consensus
Probab=23.21 E-value=89 Score=24.41 Aligned_cols=67 Identities=15% Similarity=0.238 Sum_probs=47.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhhh--------------hcHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCCCCCCCC
Q psy1651 59 RKEIRKELKIKEGAEKLREVARDR--------------KSLSDVATIVKKSNSKLSELHNELQELESQIIMTQGQTVTSP 124 (141)
Q Consensus 59 r~eI~KELKIKeGAENL~rAttdk--------------k~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~v~q~~~~~s~ 124 (141)
+.-...||-.-++--|.++.+..- |-.+.+..|++.+...|.+++++...-...+.-.|....++.
T Consensus 38 nk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q~~~ 117 (120)
T KOG3478|consen 38 NKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQPAA 117 (120)
T ss_pred hHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 344567777888888887765432 446778888888888999999888887777776666554444
Q ss_pred C
Q psy1651 125 T 125 (141)
Q Consensus 125 ~ 125 (141)
|
T Consensus 118 ~ 118 (120)
T KOG3478|consen 118 P 118 (120)
T ss_pred C
Confidence 3
No 132
>KOG2264|consensus
Probab=23.09 E-value=3.9e+02 Score=26.67 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=6.7
Q ss_pred HHHHHHHHhHHHHHHH
Q psy1651 88 VATIVKKSNSKLSELH 103 (141)
Q Consensus 88 Ve~eLs~sN~kL~~L~ 103 (141)
+.++....|.+|++||
T Consensus 105 l~seI~~~n~kiEelk 120 (907)
T KOG2264|consen 105 LNSEIEEINTKIEELK 120 (907)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 3344444444444443
No 133
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=23.09 E-value=3.9e+02 Score=23.80 Aligned_cols=67 Identities=24% Similarity=0.366 Sum_probs=30.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 45 EALPNKLEELKEHIRKEIRKELKIKEGA-EKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELKIKeGA-ENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
..++.+++++|+. |.++.|+++.+.+. +.- +..-+..-..+..+++....++..+.+++.++-.+++
T Consensus 40 r~~~~~~~~l~~e-rN~~sk~i~~~~~~~~~~--~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lP 107 (418)
T TIGR00414 40 KKLLSEIEELQAK-RNELSKQIGKAKGQKKDK--IEEIKKELKELKEELTELSAALKALEAELQDKLLSIP 107 (418)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhccCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455556666643 44666766542111 110 1111112233444555555555555555555444443
No 134
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=23.09 E-value=1.3e+02 Score=21.39 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhcccccccCC
Q psy1651 85 LSDVATIVKKSNSKLSELHNELQELESQIIMTQG 118 (141)
Q Consensus 85 r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~v~q~ 118 (141)
...|..++......+..|+.++.+|+..+.-+..
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~ 60 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQLEELRE 60 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 4556666666777777777777777777665543
No 135
>PRK10404 hypothetical protein; Provisional
Probab=22.95 E-value=3.1e+02 Score=20.11 Aligned_cols=41 Identities=10% Similarity=0.144 Sum_probs=27.5
Q ss_pred hhhhhHHHHHHHHhhh------hcHHHHHHHHHHHhHHHHHHHHHHH
Q psy1651 67 KIKEGAEKLREVARDR------KSLSDVATIVKKSNSKLSELHNELQ 107 (141)
Q Consensus 67 KIKeGAENL~rAttdk------k~r~~Ve~eLs~sN~kL~~L~~eL~ 107 (141)
.+-+.+|.|++.+.+. ..|++++.-|+.+..++.++.....
T Consensus 16 ~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~ 62 (101)
T PRK10404 16 LLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYY 62 (101)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4567778888887765 3466777777777666666665543
No 136
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=22.94 E-value=5e+02 Score=25.24 Aligned_cols=12 Identities=25% Similarity=0.750 Sum_probs=9.1
Q ss_pred hhhhhhhhcCCc
Q psy1651 27 VLYELSHKYGFI 38 (141)
Q Consensus 27 ~~~~L~~~~~~~ 38 (141)
-..+++..+|++
T Consensus 484 ~a~~iA~~~Glp 495 (771)
T TIGR01069 484 YAFEIAQRYGIP 495 (771)
T ss_pred HHHHHHHHhCcC
Confidence 456888999984
No 137
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=22.78 E-value=1.8e+02 Score=21.49 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=17.9
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q psy1651 84 SLSDVATIVKKSNSKLSELHNELQELES 111 (141)
Q Consensus 84 ~r~~Ve~eLs~sN~kL~~L~~eL~eLna 111 (141)
+...+...|...+.+++.+...++++.+
T Consensus 109 ~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 109 ALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666677777777776666543
No 138
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=21.96 E-value=1.4e+02 Score=21.48 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=13.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhccc
Q psy1651 87 DVATIVKKSNSKLSELHNELQELESQ 112 (141)
Q Consensus 87 ~Ve~eLs~sN~kL~~L~~eL~eLna~ 112 (141)
.+..++.+.-.||.+++..|.+|+++
T Consensus 5 Ki~~eieK~k~Kiae~Q~rlK~Le~q 30 (83)
T PF14193_consen 5 KIRAEIEKTKEKIAELQARLKELEAQ 30 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555443
No 139
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=21.75 E-value=3.7e+02 Score=23.04 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=9.0
Q ss_pred chhhhhHHHHHHHH
Q psy1651 45 EALPNKLEELKEHI 58 (141)
Q Consensus 45 ~~~q~kLe~~ra~I 58 (141)
..+++++|+++..+
T Consensus 100 ~pLe~k~E~wkk~~ 113 (231)
T cd07643 100 NPLQEKIEEWKKVA 113 (231)
T ss_pred HHHHHHHHHHHHHH
Confidence 45677777766644
No 140
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=21.58 E-value=1.8e+02 Score=21.29 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=6.4
Q ss_pred HHHhHHHHHHHHHHHHh
Q psy1651 93 KKSNSKLSELHNELQEL 109 (141)
Q Consensus 93 s~sN~kL~~L~~eL~eL 109 (141)
.....+-+.|+.|+..|
T Consensus 44 ~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 44 AKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33333333333333333
No 141
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=21.32 E-value=6.4e+02 Score=23.77 Aligned_cols=65 Identities=12% Similarity=0.186 Sum_probs=42.1
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhcccccc
Q psy1651 43 AEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQIIM 115 (141)
Q Consensus 43 ~~~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~v 115 (141)
-++.+-++-+..+-.-.+.-.+|| |.=+.++ |+..+.+...+....++|+.|..|++.|..++..
T Consensus 58 V~~~FddkVnqSALteqQ~kasEL------EKqLaaL--rqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 58 VDTTFDDKVRQHATTEMQVTAAQM------QKQYEEI--RRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred ecchhHHHHHHHHHHHHHHHHHHH------HHHHHHH--HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 345666665554444455555555 3333333 3444455588888999999999999999999853
No 142
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.29 E-value=4e+02 Score=20.68 Aligned_cols=26 Identities=12% Similarity=0.327 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhc
Q psy1651 85 LSDVATIVKKSNSKLSELHNELQELE 110 (141)
Q Consensus 85 r~~Ve~eLs~sN~kL~~L~~eL~eLn 110 (141)
.+....+|+.....++.|+.+.+.++
T Consensus 163 i~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 163 IEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555666555554
No 143
>PTZ00464 SNF-7-like protein; Provisional
Probab=21.19 E-value=4.7e+02 Score=21.54 Aligned_cols=24 Identities=4% Similarity=0.213 Sum_probs=12.5
Q ss_pred HHHHHhHHHHHHHHHHHHhccccc
Q psy1651 91 IVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 91 eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
.+.....+|+++...|+..+....
T Consensus 79 ~l~~q~~nleq~~~~ie~a~~~~~ 102 (211)
T PTZ00464 79 MMMQQQFNMDQLQFTTESVKDTKV 102 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556666666655544443
No 144
>PLN02318 phosphoribulokinase/uridine kinase
Probab=21.10 E-value=2.5e+02 Score=27.42 Aligned_cols=92 Identities=16% Similarity=0.404 Sum_probs=58.5
Q ss_pred chhhhhhhhhcCCcccCcccchh-hhhHHHH---HHHHHHHHHHHHhhhhh-----HHHHHHHHhhhhc-----------
Q psy1651 25 HPVLYELSHKYGFITENVAEEAL-PNKLEEL---KEHIRKEIRKELKIKEG-----AEKLREVARDRKS----------- 84 (141)
Q Consensus 25 ~~~~~~L~~~~~~~~~d~~~~~~-q~kLe~~---ra~Ir~eI~KELKIKeG-----AENL~rAttdkk~----------- 84 (141)
.-..++++.+.|+.|+-...+=+ +-+||.+ -..+-++++..|-+.+. -|-|.+|..|++.
T Consensus 383 r~~V~~~a~kLGl~g~~i~~SYlE~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (656)
T PLN02318 383 RLVVKDVAEQLGLEGSYIPRTYIEQIQLEKLVNEVMALPEDLKTKLSLDDDLVSSPKEALSRASADRRNKNLKSGLSHSY 462 (656)
T ss_pred HHHHHHHHHHcCCCCCcccccHHHHHHHHHhHHHHhhccHHhhhhcccccccccCcHHHhhhhhhhhhhhhcccCccccc
Confidence 34468999999996655433322 2223322 22344455555555433 2556666555522
Q ss_pred ------------------------------------HHHHHHHHHHHhHHHHHHHHHHHHhccccccc
Q psy1651 85 ------------------------------------LSDVATIVKKSNSKLSELHNELQELESQIIMT 116 (141)
Q Consensus 85 ------------------------------------r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~v~ 116 (141)
--++..+++..|.++.+.-..++|||+.+...
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (656)
T PLN02318 463 STQRDKNLSKLTGLAVTNRRFDERNSESPAALNQGAITQLSEQISSLNERMDEFTSRIEELNSKLSIK 530 (656)
T ss_pred cccccccccccccccccccccCCCCCCCchhhccchHHHHHHhhcchhhhhHHHHHHHHHHhhccccc
Confidence 23577788999999999999999999998864
No 145
>KOG0728|consensus
Probab=21.04 E-value=2e+02 Score=26.09 Aligned_cols=37 Identities=30% Similarity=0.441 Sum_probs=27.1
Q ss_pred HHhhhhhHHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q psy1651 65 ELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELES 111 (141)
Q Consensus 65 ELKIKeGAENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna 111 (141)
|++|.+-+.|+++. +.+-+..|.+...|++||+-|+-
T Consensus 30 ~~~v~~kt~nlrrl----------eaqrneln~kvr~lreel~~lqe 66 (404)
T KOG0728|consen 30 QLQVAEKTQNLRRL----------EAQRNELNAKVRLLREELQLLQE 66 (404)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHhHHHHHHHHHHHHHhc
Confidence 45566667777754 45556778999999999997764
No 146
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=20.86 E-value=3.1e+02 Score=19.23 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=16.1
Q ss_pred HHHHHHhHHHHHHHHHHHHhcccccc
Q psy1651 90 TIVKKSNSKLSELHNELQELESQIIM 115 (141)
Q Consensus 90 ~eLs~sN~kL~~L~~eL~eLna~i~v 115 (141)
..-+.....|+.+.++|++|+-.|.+
T Consensus 39 ~~~~eL~~~l~~ie~~L~DL~~aV~i 64 (97)
T PF09177_consen 39 WLKRELRNALQSIEWDLEDLEEAVRI 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455666777777777766665
No 147
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=20.81 E-value=1.3e+02 Score=25.64 Aligned_cols=33 Identities=33% Similarity=0.504 Sum_probs=16.8
Q ss_pred hhcHHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 82 RKSLSDVATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 82 kk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
++.++.++.+-..+..+|++|-..-.+|++-|.
T Consensus 28 r~~Le~Ir~kq~~v~~~l~eLe~~~~el~~~i~ 60 (236)
T PF12269_consen 28 RKLLEEIRKKQQKVRNRLQELEKRFKELEAIIA 60 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555544443
No 148
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=20.71 E-value=4.5e+02 Score=26.61 Aligned_cols=12 Identities=25% Similarity=0.554 Sum_probs=5.1
Q ss_pred hhhhhHHHHHHH
Q psy1651 46 ALPNKLEELKEH 57 (141)
Q Consensus 46 ~~q~kLe~~ra~ 57 (141)
.++++++.....
T Consensus 604 ~L~~~l~~~~~~ 615 (1201)
T PF12128_consen 604 ELRERLEQAEDQ 615 (1201)
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
No 149
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=20.70 E-value=8.6e+02 Score=24.39 Aligned_cols=37 Identities=30% Similarity=0.470 Sum_probs=30.5
Q ss_pred CcccchhhhhHHHHHHHHHHHHHHHHh---hhhhHHHHHH
Q psy1651 41 NVAEEALPNKLEELKEHIRKEIRKELK---IKEGAEKLRE 77 (141)
Q Consensus 41 d~~~~~~q~kLe~~ra~Ir~eI~KELK---IKeGAENL~r 77 (141)
...++.++++++.+.++|+++|..-+. +|+=.|+|..
T Consensus 641 ~~p~~~~k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~ 680 (762)
T PLN03229 641 QTPPPNLQEKIESLNEEINKKIERVIRSSDLKSKIELLKL 680 (762)
T ss_pred cCCChhhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 335688899999999999999988765 6788888876
No 150
>COG2739 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.61 E-value=4e+02 Score=20.43 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=53.5
Q ss_pred CcccchhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhc
Q psy1651 41 NVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELE 110 (141)
Q Consensus 41 d~~~~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLn 110 (141)
|+|-+.+--..+--|..|.+-|+|=-+|=+-.|.=+......+.|..+-..|+..=.+=+++.+.|+.|+
T Consensus 33 DlSl~EIAee~~VSRqAIyDnIKr~~~~L~~YE~KL~l~~k~~~R~el~d~lk~~~~~~~~l~~~l~~l~ 102 (105)
T COG2739 33 DLSLSEIAEEFNVSRQAIYDNIKRTEKILEDYEEKLKLYEKYKIRKELYDKLKELITDPEELREILEDLD 102 (105)
T ss_pred hccHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Confidence 5566666666666788999999999999999999999998888888877766554333366777776664
No 151
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=20.59 E-value=1.4e+02 Score=21.23 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhcccc
Q psy1651 85 LSDVATIVKKSNSKLSELHNELQELESQI 113 (141)
Q Consensus 85 r~~Ve~eLs~sN~kL~~L~~eL~eLna~i 113 (141)
.+.++.+++..+.++..|..++.++...+
T Consensus 72 ~e~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 72 LETIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666655543
No 152
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=20.59 E-value=4.2e+02 Score=24.68 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcc
Q psy1651 86 SDVATIVKKSNSKLSELHNELQELES 111 (141)
Q Consensus 86 ~~Ve~eLs~sN~kL~~L~~eL~eLna 111 (141)
..+..++.....++..++.++..++.
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (650)
T TIGR03185 438 FRSEAEIEELLRQLETLKEAIEALRK 463 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 153
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=20.58 E-value=4.2e+02 Score=24.28 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhccc
Q psy1651 86 SDVATIVKKSNSKLSELHNELQELESQ 112 (141)
Q Consensus 86 ~~Ve~eLs~sN~kL~~L~~eL~eLna~ 112 (141)
..+...|..+..+++.|++||+..+.-
T Consensus 72 ~~i~~~l~~a~~e~~~L~~eL~~~~~~ 98 (593)
T PF06248_consen 72 NEIQPQLRDAAEELQELKRELEENEQL 98 (593)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666777777777777654443
No 154
>PRK14127 cell division protein GpsB; Provisional
Probab=20.49 E-value=1.4e+02 Score=22.50 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=17.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHhcccccccCC
Q psy1651 89 ATIVKKSNSKLSELHNELQELESQIIMTQG 118 (141)
Q Consensus 89 e~eLs~sN~kL~~L~~eL~eLna~i~v~q~ 118 (141)
..+......++..|+.+|.++.+++..+..
T Consensus 43 ~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~ 72 (109)
T PRK14127 43 QKEIEELQQENARLKAQVDELTKQVSVGAS 72 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 345555556666666666666666665543
No 155
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=20.46 E-value=5.5e+02 Score=25.26 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhc
Q psy1651 86 SDVATIVKKSNSKLSELHNELQELE 110 (141)
Q Consensus 86 ~~Ve~eLs~sN~kL~~L~~eL~eLn 110 (141)
..++.+|.....++++|+.+|..|.
T Consensus 484 ~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 484 ERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778888888888888766
No 156
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=20.35 E-value=3.3e+02 Score=21.09 Aligned_cols=16 Identities=44% Similarity=0.694 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHhcc
Q psy1651 96 NSKLSELHNELQELES 111 (141)
Q Consensus 96 N~kL~~L~~eL~eLna 111 (141)
||++..|.+||+.++.
T Consensus 72 ~Rk~~kl~~el~~~~~ 87 (161)
T PF04420_consen 72 NRKLDKLEEELEKLNK 87 (161)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 157
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=20.33 E-value=4.5e+02 Score=20.93 Aligned_cols=51 Identities=18% Similarity=0.382 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhc
Q psy1651 51 LEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELE 110 (141)
Q Consensus 51 Le~~ra~Ir~eI~KELKIKeGAENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLn 110 (141)
|..+|..|.+.+++=..+=+=||+|. .+|...|++.+..|.++-+.|++++
T Consensus 103 Lr~rRD~LErrl~~l~~tierAE~l~---------sqi~vvl~yL~~dl~~v~~~~e~~~ 153 (159)
T PF05384_consen 103 LRERRDELERRLRNLEETIERAENLV---------SQIGVVLNYLSGDLQQVSEQIEDAQ 153 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44455555555555555555555553 4566666666666666666666554
No 158
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=20.31 E-value=4.2e+02 Score=24.28 Aligned_cols=60 Identities=27% Similarity=0.360 Sum_probs=31.5
Q ss_pred CCcccchhhhhhhhhcCCcccCcc-cchhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcH
Q psy1651 20 GDYIRHPVLYELSHKYGFITENVA-EEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKSL 85 (141)
Q Consensus 20 ~d~~~~~~~~~L~~~~~~~~~d~~-~~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdkk~r 85 (141)
+|-.-+.-..+|-+|||+...... +..--..-..+-+.|. .|+|++|-.||++..+.+..
T Consensus 134 ~DGGqw~~~~nli~KYGvVPk~~mpet~~s~~t~~~n~~l~------~~Lr~~a~~LR~~~~~~~~~ 194 (438)
T PF03051_consen 134 SDGGQWDMVVNLIKKYGVVPKSVMPETFSSSNTSEMNEMLN------TKLREYALELRKLVKAGKSE 194 (438)
T ss_dssp -S-B-HHHHHHHHHHH---BGGGSTTGCGCHBHHHHHHHHH------HHHHHHHHHHHHHHHTTTTC
T ss_pred CCCCchHHHHHHHHHcCcCcHhhCCCCCCCCChHHHHHHHH------HHHHHHHHHHHHHHHcCCCH
Confidence 444445556788999999754432 2222222333333333 26788999999987776553
No 159
>PRK14127 cell division protein GpsB; Provisional
Probab=20.28 E-value=2.2e+02 Score=21.45 Aligned_cols=31 Identities=23% Similarity=0.226 Sum_probs=13.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhcccccccC
Q psy1651 87 DVATIVKKSNSKLSELHNELQELESQIIMTQ 117 (141)
Q Consensus 87 ~Ve~eLs~sN~kL~~L~~eL~eLna~i~v~q 117 (141)
.|...+......+..|++++..|+..+.-++
T Consensus 34 ~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~ 64 (109)
T PRK14127 34 DVIKDYEAFQKEIEELQQENARLKAQVDELT 64 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444333
No 160
>PHA03187 UL14 tegument protein; Provisional
Probab=20.11 E-value=4.4e+02 Score=23.70 Aligned_cols=32 Identities=9% Similarity=0.306 Sum_probs=20.6
Q ss_pred hhcHHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 82 RKSLSDVATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 82 kk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
|.....+...|. ||.+|+..++.+..+..+|.
T Consensus 51 KeA~~dl~rqLR-S~aRveaVeQKar~Iq~rVE 82 (322)
T PHA03187 51 KEASLDLDRYMQ-AHSRVGRVEQNARALAQRVE 82 (322)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 444555666665 67777777777776666654
No 161
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=20.10 E-value=3.2e+02 Score=19.13 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=26.4
Q ss_pred hcHHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 83 KSLSDVATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 83 k~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
..++..-.+.+....+|..|..++.++...+.
T Consensus 67 ~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 67 EDAEELKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888889999999999999998887664
No 162
>KOG1853|consensus
Probab=20.08 E-value=6.4e+02 Score=22.62 Aligned_cols=70 Identities=19% Similarity=0.294 Sum_probs=46.8
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh-----hcHHHHHHHHHHHhHHHHHHHHHHHHhcccc
Q psy1651 44 EEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDR-----KSLSDVATIVKKSNSKLSELHNELQELESQI 113 (141)
Q Consensus 44 ~~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdk-----k~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i 113 (141)
+..+-.+|+++....|+...+--+++..-|.+.+-..+. ++-..++.+|+.....-++||.-+.+|+-.-
T Consensus 47 EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaN 121 (333)
T KOG1853|consen 47 EAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQAN 121 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466667777777777777777777777777777666665 3455556666666666666676666665443
No 163
>PF06780 Erp_C: Erp protein C-terminus; InterPro: IPR009618 This entry represents the C terminus of bacterial Erp proteins that seem to be specific to Borrelia burgdorferi (a causative agent of Lyme disease). Borrelia Erp proteins are particularly heterogeneous, which might enable them to interact with a wide variety of host components [].
Probab=20.07 E-value=1.2e+02 Score=24.47 Aligned_cols=18 Identities=33% Similarity=0.626 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhh
Q psy1651 48 PNKLEELKEHIRKEIRKELKIKEG 71 (141)
Q Consensus 48 q~kLe~~ra~Ir~eI~KELKIKeG 71 (141)
-..|+..|..||- ||++|
T Consensus 74 l~eL~~~R~~LR~------Ki~eg 91 (146)
T PF06780_consen 74 LKELSDTRSSLRT------KINEG 91 (146)
T ss_pred HHHHHHHHHHHHH------HHhcc
Confidence 3456666667774 67777
No 164
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=20.06 E-value=6.3e+02 Score=24.60 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=13.7
Q ss_pred eEEEecCCcccchhhhhhhhhcCCc
Q psy1651 14 YWISSEGDYIRHPVLYELSHKYGFI 38 (141)
Q Consensus 14 ~~~~~~~d~~~~~~~~~L~~~~~~~ 38 (141)
|.+.. |-+ ...-..+++..+|++
T Consensus 478 Ykl~~-G~~-g~S~a~~iA~~~Glp 500 (782)
T PRK00409 478 YRLLI-GIP-GKSNAFEIAKRLGLP 500 (782)
T ss_pred EEEee-CCC-CCcHHHHHHHHhCcC
Confidence 44433 444 234457888999984
Done!