Query psy1651
Match_columns 141
No_of_seqs 111 out of 125
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 23:09:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1651.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1651hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cxz_B Protein (PKN); protein- 100.0 4E-30 1.4E-34 184.8 9.0 83 31-113 3-86 (86)
2 1urf_A Protein kinase C-like 1 98.4 8.6E-07 2.9E-11 63.1 6.6 57 52-108 7-68 (81)
3 2ke4_A CDC42-interacting prote 97.2 0.0014 4.8E-08 47.2 7.2 62 50-111 19-83 (98)
4 3ol1_A Vimentin; structural ge 80.5 13 0.00046 26.6 8.6 58 56-113 51-117 (119)
5 3mq7_A Bone marrow stromal ant 73.6 22 0.00076 26.6 8.3 67 48-114 31-102 (121)
6 2eqb_B RAB guanine nucleotide 71.1 26 0.0009 25.2 8.2 60 48-107 4-64 (97)
7 1ic2_A Tropomyosin alpha chain 71.0 20 0.00069 23.9 6.9 29 84-112 35-63 (81)
8 1g6u_A Domain swapped dimer; d 65.8 14 0.00049 23.4 5.0 30 81-110 18-47 (48)
9 3zs9_C Golgi to ER traffic pro 65.2 7.6 0.00026 24.0 3.4 27 53-80 7-35 (38)
10 3trt_A Vimentin; cytoskeleton, 59.7 32 0.0011 22.2 8.6 29 82-110 48-76 (77)
11 3u1c_A Tropomyosin alpha-1 cha 55.8 38 0.0013 23.5 6.3 28 85-112 39-66 (101)
12 2l5g_B Putative uncharacterize 51.9 18 0.00063 22.6 3.6 28 85-112 11-38 (42)
13 3sjd_D Golgi to ER traffic pro 51.4 20 0.00067 22.9 3.7 25 53-78 17-43 (46)
14 2wuj_A Septum site-determining 50.6 18 0.00061 23.0 3.5 28 85-112 29-56 (57)
15 3a8n_A TIAM-1, T-lymphoma inva 49.1 43 0.0015 27.4 6.4 63 59-121 148-210 (279)
16 3mq9_A Bone marrow stromal ant 48.4 1E+02 0.0034 25.4 8.6 28 48-76 372-399 (471)
17 2dfs_A Myosin-5A; myosin-V, in 45.6 62 0.0021 31.0 7.8 50 56-110 994-1043(1080)
18 2akf_A Coronin-1A; coiled coil 44.7 20 0.00067 21.2 2.7 27 87-113 3-29 (32)
19 3rfy_A Peptidyl-prolyl CIS-tra 43.5 35 0.0012 29.3 5.2 39 18-59 27-65 (369)
20 3oja_B Anopheles plasmodium-re 42.0 1.1E+02 0.0038 25.6 8.1 29 85-113 546-574 (597)
21 3ghg_A Fibrinogen alpha chain; 41.3 32 0.0011 31.5 4.9 26 90-115 131-156 (562)
22 3u1c_A Tropomyosin alpha-1 cha 41.3 65 0.0022 22.3 5.6 22 83-104 79-100 (101)
23 3u59_A Tropomyosin beta chain; 40.8 86 0.0029 21.5 6.3 27 85-111 39-65 (101)
24 2yy0_A C-MYC-binding protein; 39.4 32 0.0011 21.8 3.4 30 85-114 21-50 (53)
25 3hnw_A Uncharacterized protein 37.6 1.2E+02 0.0041 22.3 8.9 16 3-18 8-23 (138)
26 2wg5_A General control protein 36.3 40 0.0014 23.7 3.9 29 86-114 10-38 (109)
27 1ses_A Seryl-tRNA synthetase; 36.2 1.2E+02 0.0043 25.6 7.6 65 45-114 38-102 (421)
28 3m9b_A Proteasome-associated A 36.1 55 0.0019 27.0 5.2 39 75-113 59-98 (251)
29 4etp_A Kinesin-like protein KA 33.9 1.4E+02 0.0048 25.2 7.5 32 85-116 33-64 (403)
30 4fla_A Regulation of nuclear P 33.9 1.5E+02 0.0051 22.2 7.5 58 57-114 86-145 (152)
31 2ocy_A RAB guanine nucleotide 31.3 1.7E+02 0.0057 22.3 6.9 26 82-107 71-96 (154)
32 3swk_A Vimentin; cytoskeleton, 30.9 1.3E+02 0.0043 20.4 8.5 53 55-109 30-82 (86)
33 3p8c_E Probable protein brick1 30.8 1.3E+02 0.0043 20.7 5.5 60 55-114 5-69 (75)
34 2e7s_A RAB guanine nucleotide 30.6 1.4E+02 0.0048 22.4 6.3 58 49-107 25-84 (135)
35 3oja_A Leucine-rich immune mol 30.4 2.3E+02 0.0078 23.3 8.1 26 83-108 456-481 (487)
36 3m91_A Proteasome-associated A 29.5 71 0.0024 20.3 3.8 25 86-110 26-50 (51)
37 1aq5_A Matrilin-1, CMP, cartil 29.2 58 0.002 20.7 3.3 27 86-112 19-45 (47)
38 4e61_A Protein BIM1; EB1-like 29.1 45 0.0015 24.3 3.2 16 92-107 13-28 (106)
39 3u59_A Tropomyosin beta chain; 29.0 1.4E+02 0.0048 20.4 6.4 21 83-103 79-99 (101)
40 2k48_A Nucleoprotein; viral pr 29.0 1.7E+02 0.0058 21.4 9.2 29 83-111 75-103 (107)
41 1lwu_C Fibrinogen gamma chain; 28.9 87 0.003 26.3 5.3 30 85-114 28-57 (323)
42 2fxo_A Myosin heavy chain, car 28.4 1.6E+02 0.0055 20.9 8.1 29 54-82 49-77 (129)
43 1m46_B IQ4, IQ4 motif from MYO 27.5 35 0.0012 19.2 1.8 13 57-69 8-20 (26)
44 3oja_B Anopheles plasmodium-re 26.7 2.5E+02 0.0085 23.5 7.8 7 53-59 460-466 (597)
45 1o9i_A Pseudocatalase; oxidore 26.6 1.7E+02 0.0057 24.0 6.5 59 53-111 136-194 (266)
46 3u06_A Protein claret segregat 26.6 2.3E+02 0.0078 24.1 7.6 30 87-116 35-64 (412)
47 3hnw_A Uncharacterized protein 25.5 2E+02 0.0068 21.1 7.2 28 85-112 105-132 (138)
48 2nrj_A HBL B protein; enteroto 25.0 2.5E+02 0.0086 23.2 7.4 33 85-117 164-196 (346)
49 1i84_S Smooth muscle myosin he 25.0 1.2E+02 0.0042 28.7 6.1 10 97-106 927-936 (1184)
50 3fse_A Two-domain protein cont 24.9 1.6E+02 0.0053 24.7 6.2 57 46-102 282-343 (365)
51 2dq0_A Seryl-tRNA synthetase; 24.8 3E+02 0.01 23.6 8.1 63 45-114 41-107 (455)
52 1nkp_B MAX protein, MYC proto- 24.0 1.5E+02 0.0053 19.2 6.2 15 66-80 15-29 (83)
53 3rk3_E Complexin-1; snare prot 23.7 54 0.0018 22.0 2.5 39 44-82 7-49 (63)
54 2dm9_A V-type ATP synthase sub 23.7 60 0.0021 23.1 3.0 44 20-66 153-196 (198)
55 1gs9_A Apolipoprotein E, APOE4 23.6 2.3E+02 0.0079 21.1 8.7 63 45-107 87-160 (165)
56 1r6f_A Virulence-associated V 23.4 60 0.0021 27.6 3.3 50 67-116 71-145 (310)
57 1jcd_A Major outer membrane li 23.3 82 0.0028 20.1 3.3 28 86-113 7-34 (52)
58 3v1a_A Computational design, M 23.3 70 0.0024 20.3 2.9 19 91-109 28-46 (48)
59 2cpt_A SKD1 protein, vacuolar 23.1 1.8E+02 0.0061 20.6 5.4 43 68-110 41-87 (117)
60 3ocf_A Fumarate lyase:delta cr 23.0 1.8E+02 0.0063 25.3 6.5 58 55-112 263-321 (478)
61 3a8p_A T-lymphoma invasion and 22.0 1.3E+02 0.0045 23.6 5.0 53 63-115 152-204 (263)
62 2rbd_A BH2358 protein; putativ 21.7 2.3E+02 0.0079 20.4 8.1 60 56-115 20-79 (171)
63 1deq_A Fibrinogen (alpha chain 21.2 1.8E+02 0.0063 25.4 6.0 32 83-115 128-159 (390)
64 2v8t_A Manganese-containing ps 21.2 2.4E+02 0.0081 23.6 6.5 57 53-109 143-199 (302)
65 1c94_A Retro-GCN4 leucine zipp 20.9 1E+02 0.0035 18.6 3.1 24 86-109 12-35 (38)
66 1a92_A Delta antigen; leucine 20.5 1.8E+02 0.0062 18.7 4.5 30 76-105 7-36 (50)
67 3tnu_B Keratin, type II cytosk 20.3 59 0.002 23.2 2.3 26 87-112 72-97 (129)
68 2dq3_A Seryl-tRNA synthetase; 20.2 2.3E+02 0.0077 24.0 6.3 65 45-114 40-106 (425)
69 1lwu_B Fibrinogen beta chain; 20.2 1.5E+02 0.0051 24.7 5.1 27 86-112 31-57 (323)
70 4dk0_A Putative MACA; alpha-ha 20.1 3.1E+02 0.011 21.3 7.8 14 45-58 66-79 (369)
71 2p01_A Alpha-2-macroglobulin r 20.1 1.4E+02 0.0049 25.5 5.0 60 41-107 177-248 (323)
72 3qne_A Seryl-tRNA synthetase, 20.1 4.3E+02 0.015 23.2 8.2 28 86-113 81-108 (485)
No 1
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=99.96 E-value=4e-30 Score=184.76 Aligned_cols=83 Identities=40% Similarity=0.639 Sum_probs=79.2
Q ss_pred hhhhcCCcccCcccchhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh-hhcHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy1651 31 LSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARD-RKSLSDVATIVKKSNSKLSELHNELQEL 109 (141)
Q Consensus 31 L~~~~~~~~~d~~~~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttd-kk~r~~Ve~eLs~sN~kL~~L~~eL~eL 109 (141)
++..+|+++.|..+|.+|++++++|+.||++|+||||||+|||||++|||| |+++++|+.+|++||++|++||++|++|
T Consensus 3 ~~~~~~~~~~~~~d~~~q~~le~~r~~ir~eI~KElKiKeGaENL~katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~eL 82 (86)
T 1cxz_B 3 LLEQLGLAGADLAAPGVQQQLELERERLRREIRKELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQEL 82 (86)
T ss_dssp HHHHTTCTTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccCccccccChHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788887888999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cccc
Q psy1651 110 ESQI 113 (141)
Q Consensus 110 na~i 113 (141)
+|+|
T Consensus 83 ~a~~ 86 (86)
T 1cxz_B 83 HAHV 86 (86)
T ss_dssp HTTC
T ss_pred cCCC
Confidence 9986
No 2
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=98.37 E-value=8.6e-07 Score=63.15 Aligned_cols=57 Identities=26% Similarity=0.415 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHH-----hhhhcHHHHHHHHHHHhHHHHHHHHHHHH
Q psy1651 52 EELKEHIRKEIRKELKIKEGAEKLREVA-----RDRKSLSDVATIVKKSNSKLSELHNELQE 108 (141)
Q Consensus 52 e~~ra~Ir~eI~KELKIKeGAENL~rAt-----tdkk~r~~Ve~eLs~sN~kL~~L~~eL~e 108 (141)
+.+-+.|++++..|+|+|.|||||.+.. .|||.++.....|..|..||+.|+-+|..
T Consensus 7 ~~rl~~L~kqL~IElkVK~GAENmi~~y~~g~~~drKlLaeAQqmL~DSk~KIe~lRmqI~k 68 (81)
T 1urf_A 7 LSRVAGLEKQLAIELKVKQGAENMIQTYSNGSTKDRKLLLTAQQMLQDSKTKIDIIRMQLRR 68 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788999999999999999998885 45688999999999999999999988843
No 3
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=97.16 E-value=0.0014 Score=47.21 Aligned_cols=62 Identities=21% Similarity=0.372 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhc---HHHHHHHHHHHhHHHHHHHHHHHHhcc
Q psy1651 50 KLEELKEHIRKEIRKELKIKEGAEKLREVARDRKS---LSDVATIVKKSNSKLSELHNELQELES 111 (141)
Q Consensus 50 kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdkk~---r~~Ve~eLs~sN~kL~~L~~eL~eLna 111 (141)
+|+.....|.++|.||.+=|+|.++|..|-...-+ -..|+.+|..++.+|+.|+.++.-+++
T Consensus 19 kL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~ 83 (98)
T 2ke4_A 19 RLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEA 83 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888889999999999999999999999766532 355688999999999999988875554
No 4
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=80.53 E-value=13 Score=26.60 Aligned_cols=58 Identities=26% Similarity=0.390 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhhhhHHHH----HHHHhhh-hcHHHHHHHHHHHhHHHHHHH----HHHHHhcccc
Q psy1651 56 EHIRKEIRKELKIKEGAEKL----REVARDR-KSLSDVATIVKKSNSKLSELH----NELQELESQI 113 (141)
Q Consensus 56 a~Ir~eI~KELKIKeGAENL----~rAttdk-k~r~~Ve~eLs~sN~kL~~L~----~eL~eLna~i 113 (141)
+.+|.....|+.++..+||= ++.+.+- -.|...+..+.+....|.=|+ +|+.+|.++|
T Consensus 51 edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~eLq~qi 117 (119)
T 3ol1_A 51 MRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQAQI 117 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777888888888874 3333332 224444444555555544443 3666777765
No 5
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=73.61 E-value=22 Score=26.65 Aligned_cols=67 Identities=13% Similarity=0.168 Sum_probs=40.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhc-----HHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 48 PNKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKS-----LSDVATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 48 q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdkk~-----r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
+++|-.-++.+|+.=.-.---..-.++|+..+...+. ....+.|+...|.+|++.-.+++.|.....
T Consensus 31 q~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 31 QQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 3444444444444333333444455667666665443 466778888888888887777777766554
No 6
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=71.07 E-value=26 Score=25.18 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh-hhcHHHHHHHHHHHhHHHHHHHHHHH
Q psy1651 48 PNKLEELKEHIRKEIRKELKIKEGAEKLREVARD-RKSLSDVATIVKKSNSKLSELHNELQ 107 (141)
Q Consensus 48 q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttd-kk~r~~Ve~eLs~sN~kL~~L~~eL~ 107 (141)
.+.++..|+.|++-=..--.+..-...|...+.. +..|..++.+++..+..|++|-..|.
T Consensus 4 ~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLF 64 (97)
T 2eqb_B 4 GSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF 64 (97)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556665553222222233334445544444 35677888888888888887777665
No 7
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=70.99 E-value=20 Score=23.90 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHhccc
Q psy1651 84 SLSDVATIVKKSNSKLSELHNELQELESQ 112 (141)
Q Consensus 84 ~r~~Ve~eLs~sN~kL~~L~~eL~eLna~ 112 (141)
.+...+.++.++++||+.|..+|...+.+
T Consensus 35 ~~~~~E~ev~~L~kKiq~lE~eld~~ee~ 63 (81)
T 1ic2_A 35 RSKQLEDELVALQKKLKGTEDELDKYSES 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888765544
No 8
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=65.84 E-value=14 Score=23.39 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=25.7
Q ss_pred hhhcHHHHHHHHHHHhHHHHHHHHHHHHhc
Q psy1651 81 DRKSLSDVATIVKKSNSKLSELHNELQELE 110 (141)
Q Consensus 81 dkk~r~~Ve~eLs~sN~kL~~L~~eL~eLn 110 (141)
+....+.+++||.....+|+.|+..|+.|.
T Consensus 18 speelaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 18 SPEELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345577899999999999999999999875
No 9
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=65.19 E-value=7.6 Score=23.97 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhhhhh-H-HHHHHHHh
Q psy1651 53 ELKEHIRKEIRKELKIKEG-A-EKLREVAR 80 (141)
Q Consensus 53 ~~ra~Ir~eI~KELKIKeG-A-ENL~rAtt 80 (141)
..++.|+++ +++-||+.| | ..|-+.|.
T Consensus 7 ~ekaRlrRE-RR~aKi~~Ggas~RLnkItg 35 (38)
T 3zs9_C 7 AEKRRLLRE-RRQKKFSNGGASSRLNKITG 35 (38)
T ss_dssp HHHHHHHHH-HHHHHHTTTHHHHHHHHHC-
T ss_pred HHHHHHHHH-HHHHHHHccChHHHHHHHHc
Confidence 456667766 566799998 6 66666553
No 10
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=59.74 E-value=32 Score=22.22 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=22.7
Q ss_pred hhcHHHHHHHHHHHhHHHHHHHHHHHHhc
Q psy1651 82 RKSLSDVATIVKKSNSKLSELHNELQELE 110 (141)
Q Consensus 82 kk~r~~Ve~eLs~sN~kL~~L~~eL~eLn 110 (141)
.........|++..++.|+.|.-||+.+.
T Consensus 48 ~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 48 NDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34556678889999999999998888764
No 11
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=55.81 E-value=38 Score=23.54 Aligned_cols=28 Identities=4% Similarity=0.061 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhccc
Q psy1651 85 LSDVATIVKKSNSKLSELHNELQELESQ 112 (141)
Q Consensus 85 r~~Ve~eLs~sN~kL~~L~~eL~eLna~ 112 (141)
...++.++.+.++|++.|..+|..++.+
T Consensus 39 ~~~~E~Ei~sL~kk~~~lE~eld~~ee~ 66 (101)
T 3u1c_A 39 SKQLEDDIVQLEKQLRVTEDSRDQVLEE 66 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888888888888888887765543
No 12
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=51.90 E-value=18 Score=22.65 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhccc
Q psy1651 85 LSDVATIVKKSNSKLSELHNELQELESQ 112 (141)
Q Consensus 85 r~~Ve~eLs~sN~kL~~L~~eL~eLna~ 112 (141)
-.+|+.|.-....+|..|+..+.+|+..
T Consensus 11 I~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999998754
No 13
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=51.44 E-value=20 Score=22.92 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhhhhh-HH-HHHHH
Q psy1651 53 ELKEHIRKEIRKELKIKEG-AE-KLREV 78 (141)
Q Consensus 53 ~~ra~Ir~eI~KELKIKeG-AE-NL~rA 78 (141)
+.++.|+++ ++|-||+.| +. .|-++
T Consensus 17 ~EkaRLrRE-RR~aKi~~G~assRLNkI 43 (46)
T 3sjd_D 17 AEKRRLLRE-RRQKKFSNGGASSRLNKI 43 (46)
T ss_dssp HHHHHHHHH-HHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHccchHHHHHHH
Confidence 345556655 567799998 44 44433
No 14
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=50.60 E-value=18 Score=23.01 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhccc
Q psy1651 85 LSDVATIVKKSNSKLSELHNELQELESQ 112 (141)
Q Consensus 85 r~~Ve~eLs~sN~kL~~L~~eL~eLna~ 112 (141)
+..|..++......+..|++++..|+.+
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677777777777777777777654
No 15
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}
Probab=49.08 E-value=43 Score=27.38 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=48.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCCCCC
Q psy1651 59 RKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQIIMTQGQTV 121 (141)
Q Consensus 59 r~eI~KELKIKeGAENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~v~q~~~~ 121 (141)
.++|..|-|+|..+|=-..+..|++.+..+..+...=..+|+.|+-|+..+.+.+.+-+++..
T Consensus 148 ~~~~~~e~k~~~~~el~~s~~~d~~~k~~~~~~~~~~e~~~~~l~~e~~R~~~y~~~l~~~~~ 210 (279)
T 3a8n_A 148 EQKIDMDEKMKKMGEMQLSSVTDSKKKKTILDQIFVWEQNLEQFQMDLFRFRCYLASLQGGEL 210 (279)
T ss_dssp HHHHHHHHHHTHHHHHHHTTCCCGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCC
T ss_pred HHhhcchhhhccchhhhhhcCCCchhhhhhhHHHHHHHhHhhhhhhhhhhHhhhHhhhccCcC
Confidence 456667778888887333456888888888888888889999999999999887777665544
No 16
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=48.39 E-value=1e+02 Score=25.37 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy1651 48 PNKLEELKEHIRKEIRKELKIKEGAEKLR 76 (141)
Q Consensus 48 q~kLe~~ra~Ir~eI~KELKIKeGAENL~ 76 (141)
..=|++..+.+++.|.+ ++.-.+++|-.
T Consensus 372 eeal~~~~~~i~~~l~~-~~~~~e~~~~~ 399 (471)
T 3mq9_A 372 DEALKDAQTRITAARDG-LRAVMEARNVT 399 (471)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-hHHHHHhhhHH
Confidence 33455555555544433 33333444443
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=45.61 E-value=62 Score=31.01 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhc
Q psy1651 56 EHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELE 110 (141)
Q Consensus 56 a~Ir~eI~KELKIKeGAENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLn 110 (141)
+.+++++.+..|-++-.|.-..-+. ...+..++..+...+.|++++.+|+
T Consensus 994 ~~l~~~~~~~~ke~~~lee~~~~~~-----~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 994 AKLRKELHQTQTEKKTIEEWADKYK-----HETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433322222 2333444445555555555555554
No 18
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=44.67 E-value=20 Score=21.24 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=22.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhcccc
Q psy1651 87 DVATIVKKSNSKLSELHNELQELESQI 113 (141)
Q Consensus 87 ~Ve~eLs~sN~kL~~L~~eL~eLna~i 113 (141)
+++.+++..|.-.+.|++.+..|+-.+
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999998887654
No 19
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=43.52 E-value=35 Score=29.27 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=29.1
Q ss_pred ecCCcccchhhhhhhhhcCCcccCcccchhhhhHHHHHHHHH
Q psy1651 18 SEGDYIRHPVLYELSHKYGFITENVAEEALPNKLEELKEHIR 59 (141)
Q Consensus 18 ~~~d~~~~~~~~~L~~~~~~~~~d~~~~~~q~kLe~~ra~Ir 59 (141)
.+|++++.|- ....|.+++.+..-..+|.+||+.-..||
T Consensus 27 ~~g~~~~~~~---a~lr~alp~~~~~~~~~q~~le~~~~~lr 65 (369)
T 3rfy_A 27 ISGPPIKDPE---ALLRYALPIDNKAIREVQKPLEDITDSLK 65 (369)
T ss_dssp EESTTSCCHH---HHHHHHSCCCCHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCHH---HHHhhhcCCCChhHHHHHHHHHHHHHHhc
Confidence 4788888875 34567887777777888888887776665
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=42.00 E-value=1.1e+02 Score=25.58 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhcccc
Q psy1651 85 LSDVATIVKKSNSKLSELHNELQELESQI 113 (141)
Q Consensus 85 r~~Ve~eLs~sN~kL~~L~~eL~eLna~i 113 (141)
+..++..+..-..++++|++|++.+.+.+
T Consensus 546 ~~~le~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 546 NIALEKQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 44555656666666666666666554443
No 21
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=41.30 E-value=32 Score=31.51 Aligned_cols=26 Identities=12% Similarity=0.173 Sum_probs=18.5
Q ss_pred HHHHHHhHHHHHHHHHHHHhcccccc
Q psy1651 90 TIVKKSNSKLSELHNELQELESQIIM 115 (141)
Q Consensus 90 ~eLs~sN~kL~~L~~eL~eLna~i~v 115 (141)
..|+.+-..|+++..+|+.|+..|++
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777788877777765
No 22
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=41.28 E-value=65 Score=22.33 Aligned_cols=22 Identities=9% Similarity=0.184 Sum_probs=16.2
Q ss_pred hcHHHHHHHHHHHhHHHHHHHH
Q psy1651 83 KSLSDVATIVKKSNSKLSELHN 104 (141)
Q Consensus 83 k~r~~Ve~eLs~sN~kL~~L~~ 104 (141)
+.+...+.+..+.|+||++|-+
T Consensus 79 k~~~~aE~ev~~L~RriqllEE 100 (101)
T 3u1c_A 79 ENAAKAESEVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 4566777788888888887754
No 23
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=40.79 E-value=86 Score=21.50 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhcc
Q psy1651 85 LSDVATIVKKSNSKLSELHNELQELES 111 (141)
Q Consensus 85 r~~Ve~eLs~sN~kL~~L~~eL~eLna 111 (141)
...++.++.+++++++.|..++..++.
T Consensus 39 ~~~~E~ei~sL~kKiq~lE~eld~~~e 65 (101)
T 3u59_A 39 CKQLEEEQQGLQKKLKGTEDEVEKYSE 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777766664443
No 24
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=39.39 E-value=32 Score=21.78 Aligned_cols=30 Identities=10% Similarity=0.186 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 85 LSDVATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 85 r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
-+.+..|+...-.+++.|++++++|.+++.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566777788888888888888887654
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=37.59 E-value=1.2e+02 Score=22.27 Aligned_cols=16 Identities=6% Similarity=0.129 Sum_probs=13.5
Q ss_pred CCeEEeecCceeEEEe
Q psy1651 3 NPVYLVQNDRYYWISS 18 (141)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (141)
|+|-+.-+|+.|.|.-
T Consensus 8 ~~V~V~I~Gk~Y~i~g 23 (138)
T 3hnw_A 8 NTAEVILGGKVIKLGG 23 (138)
T ss_dssp -CEEEEETTEEEEECS
T ss_pred CeeEEEECCEEEEecC
Confidence 6888999999999984
No 26
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=36.28 E-value=40 Score=23.69 Aligned_cols=29 Identities=28% Similarity=0.263 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 86 SDVATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 86 ~~Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
.+.+.+++..++++..|+++|+.|.+...
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~~~P~ 38 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLRSPPL 38 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 36788899999999999999998887543
No 27
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=36.19 E-value=1.2e+02 Score=25.61 Aligned_cols=65 Identities=18% Similarity=0.202 Sum_probs=34.7
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 45 EALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
..++.+++++++. |.++.|++.-|.|.+ +..-+.....+..+++....++..+.++|.++-.+++
T Consensus 38 r~~~~~~~~l~~~-~n~~sk~i~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 102 (421)
T 1ses_A 38 QELKKRLQEVQTE-RNQVAKRVPKAPPEE----KEALIARGKALGEEAKRLEEALREKEARLEALLLQVP 102 (421)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHSSSSCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHhhcccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445555555554 346777776555521 1111222345556666666667777777765544443
No 28
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=36.10 E-value=55 Score=26.97 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=28.1
Q ss_pred HHHHHhhhhcHH-HHHHHHHHHhHHHHHHHHHHHHhcccc
Q psy1651 75 LREVARDRKSLS-DVATIVKKSNSKLSELHNELQELESQI 113 (141)
Q Consensus 75 L~rAttdkk~r~-~Ve~eLs~sN~kL~~L~~eL~eLna~i 113 (141)
|.+.+.....+. .+..+|+.+.++|..|++||+.|.+..
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPP 98 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPP 98 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 333333333333 488899999999999999999886543
No 29
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=33.94 E-value=1.4e+02 Score=25.17 Aligned_cols=32 Identities=34% Similarity=0.488 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhccccccc
Q psy1651 85 LSDVATIVKKSNSKLSELHNELQELESQIIMT 116 (141)
Q Consensus 85 r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~v~ 116 (141)
...+...|..-+.....||.+|++|...|-|+
T Consensus 33 ~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~ 64 (403)
T 4etp_A 33 MKELNEILIKEETVRRTLHNELQELRGNIRVY 64 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 44556667777778888999999999888874
No 30
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=33.87 E-value=1.5e+02 Score=22.21 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHhh--hhcHHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 57 HIRKEIRKELKIKEGAEKLREVARD--RKSLSDVATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 57 ~Ir~eI~KELKIKeGAENL~rAttd--kk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
.....+..|++=+.=...|++..+. +.+...++..|+....++..++.--.+|++++.
T Consensus 86 eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~ 145 (152)
T 4fla_A 86 EYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQ 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556677788777766666666555 356888888899999888888888888888764
No 31
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=31.34 E-value=1.7e+02 Score=22.33 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=17.5
Q ss_pred hhcHHHHHHHHHHHhHHHHHHHHHHH
Q psy1651 82 RKSLSDVATIVKKSNSKLSELHNELQ 107 (141)
Q Consensus 82 kk~r~~Ve~eLs~sN~kL~~L~~eL~ 107 (141)
+..|..++.+++..+..|++|-..|.
T Consensus 71 ~~~R~~aE~~~~~ie~ElEeLTasLF 96 (154)
T 2ocy_A 71 NELRTKAEEEADKLNKEVEDLTASLF 96 (154)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777766664
No 32
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=30.86 E-value=1.3e+02 Score=20.45 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy1651 55 KEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQEL 109 (141)
Q Consensus 55 ra~Ir~eI~KELKIKeGAENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eL 109 (141)
-+..|....-|+.++.++||=..+ =||.....-..-.....+++-|++||.=|
T Consensus 30 ~edfk~KyE~E~~~R~~~E~d~~~--LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 30 IMRLREKLQEEMLQREEAENTLQS--FRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888999999999985555 34444444444455667788888887654
No 33
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=30.76 E-value=1.3e+02 Score=20.67 Aligned_cols=60 Identities=15% Similarity=0.251 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhhh-----hcHHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 55 KEHIRKEIRKELKIKEGAEKLREVARDR-----KSLSDVATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 55 ra~Ir~eI~KELKIKeGAENL~rAttdk-----k~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
++.++++|++-+.=|+=.|.+---...- +--...+.-|...|.||+.|-..|.-|+|++-
T Consensus 5 ~~~~q~~iq~DW~nRe~ie~in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~LEr~L~iLEAkls 69 (75)
T 3p8c_E 5 EDPVQREIHQDWANREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARVT 69 (75)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555444332221111 12234455566667777777777777766654
No 34
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=30.63 E-value=1.4e+02 Score=22.41 Aligned_cols=58 Identities=21% Similarity=0.327 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHhh-hhcHHHHHHHHHHHhHHHHHHHHHHH
Q psy1651 49 NKLEELKEHIRKEIRKELK-IKEGAEKLREVARD-RKSLSDVATIVKKSNSKLSELHNELQ 107 (141)
Q Consensus 49 ~kLe~~ra~Ir~eI~KELK-IKeGAENL~rAttd-kk~r~~Ve~eLs~sN~kL~~L~~eL~ 107 (141)
+.++..++.+.+ +.++++ +.+-...|...+.. +..|..++.+++..+..|++|-..|.
T Consensus 25 ~~le~l~~~l~~-l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLF 84 (135)
T 2e7s_A 25 ENYNQLKEDYNT-LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF 84 (135)
T ss_dssp HHHHHHHHHHHH-HHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554432 233333 33444555555544 46688888888888888888887776
No 35
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.42 E-value=2.3e+02 Score=23.32 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=15.0
Q ss_pred hcHHHHHHHHHHHhHHHHHHHHHHHH
Q psy1651 83 KSLSDVATIVKKSNSKLSELHNELQE 108 (141)
Q Consensus 83 k~r~~Ve~eLs~sN~kL~~L~~eL~e 108 (141)
+....+...+...+.+++++..+=+-
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (487)
T 3oja_A 456 KLNGEADLALASANATLQELVVREQN 481 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHhcccHHHHHHHHHHH
Confidence 44555666666666666666554443
No 36
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=29.54 E-value=71 Score=20.27 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhc
Q psy1651 86 SDVATIVKKSNSKLSELHNELQELE 110 (141)
Q Consensus 86 ~~Ve~eLs~sN~kL~~L~~eL~eLn 110 (141)
..+...|+.+-.+|..|+++|+.|-
T Consensus 26 ~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 26 SKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667788999999999999998763
No 37
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=29.17 E-value=58 Score=20.66 Aligned_cols=27 Identities=19% Similarity=0.433 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhccc
Q psy1651 86 SDVATIVKKSNSKLSELHNELQELESQ 112 (141)
Q Consensus 86 ~~Ve~eLs~sN~kL~~L~~eL~eLna~ 112 (141)
..|...|...+++|+.+-++|+.|+-+
T Consensus 19 ~~v~~~l~~Lt~kL~~vt~rle~lEnr 45 (47)
T 1aq5_A 19 TKVEELINTLQQKLEAVAKRIEALENK 45 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777788888888888888777644
No 38
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=29.12 E-value=45 Score=24.28 Aligned_cols=16 Identities=25% Similarity=0.540 Sum_probs=5.8
Q ss_pred HHHHhHHHHHHHHHHH
Q psy1651 92 VKKSNSKLSELHNELQ 107 (141)
Q Consensus 92 Ls~sN~kL~~L~~eL~ 107 (141)
|+.++..++.|.+++.
T Consensus 13 L~~~~~ei~~L~~ei~ 28 (106)
T 4e61_A 13 LTKSQETIGSLNEEIE 28 (106)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 39
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=29.02 E-value=1.4e+02 Score=20.40 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=16.1
Q ss_pred hcHHHHHHHHHHHhHHHHHHH
Q psy1651 83 KSLSDVATIVKKSNSKLSELH 103 (141)
Q Consensus 83 k~r~~Ve~eLs~sN~kL~~L~ 103 (141)
+.+...+.+..+.|++|+.|-
T Consensus 79 k~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 79 KKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 456777888888888888764
No 40
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=29.00 E-value=1.7e+02 Score=21.41 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=22.9
Q ss_pred hcHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q psy1651 83 KSLSDVATIVKKSNSKLSELHNELQELES 111 (141)
Q Consensus 83 k~r~~Ve~eLs~sN~kL~~L~~eL~eLna 111 (141)
.....=..+.+....||.+|+..|.++-+
T Consensus 75 ~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 75 STLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555567888899999999999998754
No 41
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=28.90 E-value=87 Score=26.26 Aligned_cols=30 Identities=7% Similarity=0.278 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 85 LSDVATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 85 r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
...++..|...+.+|++|+++|.+|...+.
T Consensus 28 i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 28 IQELSEMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566777788999999998888876654
No 42
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=28.41 E-value=1.6e+02 Score=20.91 Aligned_cols=29 Identities=14% Similarity=0.102 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhhh
Q psy1651 54 LKEHIRKEIRKELKIKEGAEKLREVARDR 82 (141)
Q Consensus 54 ~ra~Ir~eI~KELKIKeGAENL~rAttdk 82 (141)
.+..|..++.-|--.-.-||-++..+..+
T Consensus 49 Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~ 77 (129)
T 2fxo_A 49 EKNDLQLQVQAEQDNLADAEERCDQLIKN 77 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33344444444444444455555544443
No 43
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=27.54 E-value=35 Score=19.23 Aligned_cols=13 Identities=54% Similarity=0.856 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhhh
Q psy1651 57 HIRKEIRKELKIK 69 (141)
Q Consensus 57 ~Ir~eI~KELKIK 69 (141)
.+.+.|+||||-+
T Consensus 8 nlqkkirkelkqr 20 (26)
T 1m46_B 8 NLQKKIRKELKQR 20 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4667788888754
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.74 E-value=2.5e+02 Score=23.47 Aligned_cols=7 Identities=29% Similarity=0.729 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy1651 53 ELKEHIR 59 (141)
Q Consensus 53 ~~ra~Ir 59 (141)
+++..++
T Consensus 460 ~~~~~i~ 466 (597)
T 3oja_B 460 ELRAEVQ 466 (597)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 45
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A
Probab=26.64 E-value=1.7e+02 Score=24.00 Aligned_cols=59 Identities=14% Similarity=0.216 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q psy1651 53 ELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELES 111 (141)
Q Consensus 53 ~~ra~Ir~eI~KELKIKeGAENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna 111 (141)
+..+.|+.-|.-|-+=|.-+++|.+.|+|+..++.+...+..=..-.+.+.+=|++|..
T Consensus 136 dl~aDL~~niaaE~~Ar~~Y~rl~~~tdDp~vkd~L~fLi~RE~~H~~~f~~aLe~l~~ 194 (266)
T 1o9i_A 136 NLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEE 194 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36788999999999999999999999999988877776665444444444444444433
No 46
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.57 E-value=2.3e+02 Score=24.09 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=23.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhccccccc
Q psy1651 87 DVATIVKKSNSKLSELHNELQELESQIIMT 116 (141)
Q Consensus 87 ~Ve~eLs~sN~kL~~L~~eL~eLna~i~v~ 116 (141)
.+..+|...+.....||.+|++|...|-|.
T Consensus 35 ~~~~~l~~~~~~rr~l~n~~~~l~gnIrV~ 64 (412)
T 3u06_A 35 TCKEQLFQSNMERKELHNTVMDLRDNIRVF 64 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 344556667788889999999999988874
No 47
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=25.54 E-value=2e+02 Score=21.06 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhccc
Q psy1651 85 LSDVATIVKKSNSKLSELHNELQELESQ 112 (141)
Q Consensus 85 r~~Ve~eLs~sN~kL~~L~~eL~eLna~ 112 (141)
.+.+..++.....++..|+.++..|++.
T Consensus 105 ~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 105 AESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555443
No 48
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=25.00 E-value=2.5e+02 Score=23.16 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhcccccccC
Q psy1651 85 LSDVATIVKKSNSKLSELHNELQELESQIIMTQ 117 (141)
Q Consensus 85 r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~v~q 117 (141)
...+...|+..+..|.+|+.+|+.++..+.-+.
T Consensus 164 ~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~~~~ 196 (346)
T 2nrj_A 164 KELLQSILKNQGADVDADQKRLEEVLGSVNYYK 196 (346)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHTGGGCGGG
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 344557788888889999999999999998433
No 49
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=24.99 E-value=1.2e+02 Score=28.75 Aligned_cols=10 Identities=20% Similarity=0.388 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy1651 97 SKLSELHNEL 106 (141)
Q Consensus 97 ~kL~~L~~eL 106 (141)
.++++|..++
T Consensus 927 ~~l~ele~el 936 (1184)
T 1i84_S 927 EILHEMEARI 936 (1184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 50
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=24.94 E-value=1.6e+02 Score=24.70 Aligned_cols=57 Identities=16% Similarity=0.087 Sum_probs=33.0
Q ss_pred hhhhhHH--HHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcHHHHHHH---HHHHhHHHHHH
Q psy1651 46 ALPNKLE--ELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATI---VKKSNSKLSEL 102 (141)
Q Consensus 46 ~~q~kLe--~~ra~Ir~eI~KELKIKeGAENL~rAttdkk~r~~Ve~e---Ls~sN~kL~~L 102 (141)
.++.++. +--+.||+.+.-|=|==.-++||.+=.+|...++-++.. |+..++.|..|
T Consensus 282 ~~~~~~~~~~~~~~l~~al~~~~~gi~~~~~l~~~~~dp~~~~i~~~i~~~l~~~e~~~~~l 343 (365)
T 3fse_A 282 KVKTALTGSDDIYQIRSALGDIQTGIGDIGNLCAMYTDPIATAIFKEIYKDLVKYEQRLVSL 343 (365)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHhcchhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443 334477888877777667789999999998766555444 44444444433
No 51
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=24.83 E-value=3e+02 Score=23.57 Aligned_cols=63 Identities=14% Similarity=0.279 Sum_probs=31.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhh--hhh--HHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 45 EALPNKLEELKEHIRKEIRKELKI--KEG--AEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELKI--KeG--AENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
..++.+++++|+. |.++.|++.- |.| ++.|. .....+..+++....++..+.++|.++=.+++
T Consensus 41 r~~~~~~~~l~~~-~n~~sk~i~~~~~~~~~~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 107 (455)
T 2dq0_A 41 RTKLKEINRLRHE-RNKIAVEIGKRRKKGEPVDELL------AKSREIVKRIGELENEVEELKKKIDYYLWRLP 107 (455)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHTSCCCTHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhcccccHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455555555543 2345555542 333 22211 22334555666666666666666666554443
No 52
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=23.98 E-value=1.5e+02 Score=19.24 Aligned_cols=15 Identities=27% Similarity=0.328 Sum_probs=10.5
Q ss_pred HhhhhhHHHHHHHHh
Q psy1651 66 LKIKEGAEKLREVAR 80 (141)
Q Consensus 66 LKIKeGAENL~rAtt 80 (141)
-+|++|.+.|+.++-
T Consensus 15 ~~in~~f~~Lr~lvP 29 (83)
T 1nkp_B 15 DHIKDSFHSLRDSVP 29 (83)
T ss_dssp HHHHHHHHHHHTTSG
T ss_pred HHHHHHHHHHHHHCC
Confidence 467777777777754
No 53
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=23.75 E-value=54 Score=22.04 Aligned_cols=39 Identities=28% Similarity=0.358 Sum_probs=21.6
Q ss_pred cchhhhhHHHHHHHHHHHH----HHHHhhhhhHHHHHHHHhhh
Q psy1651 44 EEALPNKLEELKEHIRKEI----RKELKIKEGAEKLREVARDR 82 (141)
Q Consensus 44 ~~~~q~kLe~~ra~Ir~eI----~KELKIKeGAENL~rAttdk 82 (141)
+|..+.+-+++.+.||++= .|=-||-+--|+||.-.-||
T Consensus 7 dpda~kke~E~~eAlrq~Ee~Rk~Kh~kME~ERE~mRQ~IRdK 49 (63)
T 3rk3_E 7 LPDAAKKFEEAQEALRQAEEERKAKYAKMEAEREAVRQGIRDK 49 (63)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555432 23345667777777776666
No 54
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=23.68 E-value=60 Score=23.14 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=32.3
Q ss_pred CCcccchhhhhhhhhcCCcccCcccchhhhhHHHHHHHHHHHHHHHH
Q psy1651 20 GDYIRHPVLYELSHKYGFITENVAEEALPNKLEELKEHIRKEIRKEL 66 (141)
Q Consensus 20 ~d~~~~~~~~~L~~~~~~~~~d~~~~~~q~kLe~~ra~Ir~eI~KEL 66 (141)
+|+...++.+-+....|= -.-|.++..+|+..+..+..+|++-|
T Consensus 153 ~~~~~~~GG~~i~~~~G~---i~id~tl~~rl~~~~~~l~~~i~~~L 196 (198)
T 2dm9_A 153 GETVDTMGGVIVETEDGR---IRIDNTFEARMERFEGEIRSTIAKVL 196 (198)
T ss_dssp CCCCCCSSEEEEEETTSS---CEEEEEHHHHHHHTHHHHHHHHHHHH
T ss_pred CCCCCccCceEEEeCCCC---EEEECcHHHHHHHHHHHhHHHHHHHh
Confidence 556666777777665551 12368999999999999999998765
No 55
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=23.56 E-value=2.3e+02 Score=21.13 Aligned_cols=63 Identities=11% Similarity=0.176 Sum_probs=30.7
Q ss_pred chhhhhHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHhhh------hcH----HHHHHHHHHHhHHHHHHHHHHH
Q psy1651 45 EALPNKLEELKEHIRKEIRKELK-IKEGAEKLREVARDR------KSL----SDVATIVKKSNSKLSELHNELQ 107 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELK-IKeGAENL~rAttdk------k~r----~~Ve~eLs~sN~kL~~L~~eL~ 107 (141)
..++.++..--+.+|.+|.+.+- +|...+=.+..+..+ ..| -.++..-+..+..+++||..|.
T Consensus 87 ~el~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl~P~~eeL~~~~~~~~eeLr~kL~ 160 (165)
T 1gs9_A 87 EETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLA 160 (165)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 44555555555556666555543 444444444444443 112 2333333445555566665553
No 56
>1r6f_A Virulence-associated V antigen; coiled-coil, protein binding; 2.17A {Yersinia pestis} SCOP: e.46.1.1
Probab=23.41 E-value=60 Score=27.64 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=29.3
Q ss_pred hhhhhHHHHHHHHhhhh-----cHHHHHHHHHHH--------------------hHHHHHHHHHHHHhccccccc
Q psy1651 67 KIKEGAEKLREVARDRK-----SLSDVATIVKKS--------------------NSKLSELHNELQELESQIIMT 116 (141)
Q Consensus 67 KIKeGAENL~rAttdkk-----~r~~Ve~eLs~s--------------------N~kL~~L~~eL~eLna~i~v~ 116 (141)
.||.|.++|...+.... .|+.+....++. -.+..+|++||++|-|..-+|
T Consensus 71 q~k~Gi~~lk~~l~~~~~t~~T~rdfLav~~~slt~dR~DddVi~a~~~~m~~~~~KR~~lk~eL~~LTaeLKIy 145 (310)
T 1r6f_A 71 QLQNGIKRVKEFLESSPNTQWELRAFMAVMHFSLTADRIDDDILKVIVDSMNHHGDARSKLREELAELTAELKIY 145 (310)
T ss_dssp HHHHHHHHHHHHHHHSSCSEEEHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCccHHHHHHHHHhccCcccccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhHH
Confidence 47778888888776541 233333322222 124567888888887776553
No 57
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=23.33 E-value=82 Score=20.07 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcccc
Q psy1651 86 SDVATIVKKSNSKLSELHNELQELESQI 113 (141)
Q Consensus 86 ~~Ve~eLs~sN~kL~~L~~eL~eLna~i 113 (141)
.++...+..+|.++..|..++..|.+.|
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~al~~~v 34 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANAARSDA 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777766543
No 58
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=23.28 E-value=70 Score=20.29 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=15.8
Q ss_pred HHHHHhHHHHHHHHHHHHh
Q psy1651 91 IVKKSNSKLSELHNELQEL 109 (141)
Q Consensus 91 eLs~sN~kL~~L~~eL~eL 109 (141)
|....+++|.+|+.|++.+
T Consensus 28 EV~~L~~NL~EL~~E~~~~ 46 (48)
T 3v1a_A 28 EVRTLQENLHQLMHEYFQQ 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5677899999999998764
No 59
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=23.15 E-value=1.8e+02 Score=20.62 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=35.3
Q ss_pred hhhhHHHHHHHH----hhhhcHHHHHHHHHHHhHHHHHHHHHHHHhc
Q psy1651 68 IKEGAEKLREVA----RDRKSLSDVATIVKKSNSKLSELHNELQELE 110 (141)
Q Consensus 68 IKeGAENL~rAt----tdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLn 110 (141)
.++|+|-|..|+ .+.+.+..+....+..-.|.+.|+.-|+.-+
T Consensus 41 Y~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~RAE~LK~~l~~~~ 87 (117)
T 2cpt_A 41 YQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKE 87 (117)
T ss_dssp HHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 678999999997 4556688888888888899999999887554
No 60
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Probab=22.99 E-value=1.8e+02 Score=25.27 Aligned_cols=58 Identities=24% Similarity=0.317 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhhh-hhHHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhccc
Q psy1651 55 KEHIRKEIRKELKIK-EGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQ 112 (141)
Q Consensus 55 ra~Ir~eI~KELKIK-eGAENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~ 112 (141)
.+.+.+.+.+++-+. .-++|...+++++..-..+-..|+..-..|..+=++|.-+.+.
T Consensus 263 ~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSg 321 (478)
T 3ocf_A 263 AEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSG 321 (478)
T ss_dssp HHHHHHHHHHHHTSCCEECSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHhcCCCCccCCChhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 356777888888888 4689999999999988899999999999999999999988864
No 61
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=22.02 E-value=1.3e+02 Score=23.55 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=29.4
Q ss_pred HHHHhhhhhHHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhcccccc
Q psy1651 63 RKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQIIM 115 (141)
Q Consensus 63 ~KELKIKeGAENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~v 115 (141)
..+-|++..+|=-.-+..|.+.+...+.+...-..+|+.|+-++..+...+-+
T Consensus 152 ~~~~k~~~~~~~~~s~~~~~~~k~~~~~~~~~w~~~l~~~~~e~~r~~~~~a~ 204 (263)
T 3a8p_A 152 DMDSKMKKMAELQLSVVSDPKNRKAIENQIRQWEQNLEKFHMDLFRMRCYLAS 204 (263)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccccchhhhhhcCCCccccccccccccccccchhhccceeeEEEEEhhh
Confidence 33444444444333344555666666666666666677777777655544333
No 62
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=21.70 E-value=2.3e+02 Score=20.39 Aligned_cols=60 Identities=7% Similarity=-0.001 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhcccccc
Q psy1651 56 EHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQIIM 115 (141)
Q Consensus 56 a~Ir~eI~KELKIKeGAENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~v 115 (141)
..|-..+....-.-+..+-++..+.|+..+.-++.-++.++..++.|.+.+..-+..++.
T Consensus 20 ~~lW~~l~~~~~~i~~~~~f~~~~~D~elk~iL~~~~~~~~~~i~~l~~~~~~~g~p~P~ 79 (171)
T 2rbd_A 20 FSTWTYLSTNNGLINGYRSFINHTGDEDLKNLIDEAIQAMQDENHQLEELLRSNGVGLPP 79 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 355666666677788889999999999999999999999999999999999865555543
No 63
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.22 E-value=1.8e+02 Score=25.42 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=24.6
Q ss_pred hcHHHHHHHHHHHhHHHHHHHHHHHHhcccccc
Q psy1651 83 KSLSDVATIVKKSNSKLSELHNELQELESQIIM 115 (141)
Q Consensus 83 k~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~v 115 (141)
++..+|. .|+.+-..|+++..+++.|+..|++
T Consensus 128 ~V~~q~~-~ir~Lq~~l~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 128 KVIEQVQ-RINLLQKNVRDQLVDMKRLEVDIDI 159 (390)
T ss_pred HHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666 7777888888888888888887765
No 64
>2v8t_A Manganese-containing pseudocatalase; manganese catalase, oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A 2cwl_A
Probab=21.15 E-value=2.4e+02 Score=23.57 Aligned_cols=57 Identities=9% Similarity=0.126 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy1651 53 ELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQEL 109 (141)
Q Consensus 53 ~~ra~Ir~eI~KELKIKeGAENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eL 109 (141)
+..+.|+.-|.-|-+=+.-+++|.+.|+|+..++.+...+..=..-.+.+.+=|++|
T Consensus 143 dl~aDL~~NiaAE~~Ar~~Y~rL~~~tdDp~vkd~L~fLi~RE~~H~~~f~~ALe~l 199 (302)
T 2v8t_A 143 NLILDLLHNFFLEVAARTHKLRVYEMTDNPVAREMIGYLLVRGGVHAAAYGKALESL 199 (302)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999999999999999888887776655444455555555566
No 65
>1c94_A Retro-GCN4 leucine zipper; retro-coiled coil, 4-alpha-helix-bundle, peptide synthesis, gene regulation; 2.08A {Synthetic} SCOP: k.11.1.1
Probab=20.91 E-value=1e+02 Score=18.59 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHh
Q psy1651 86 SDVATIVKKSNSKLSELHNELQEL 109 (141)
Q Consensus 86 ~~Ve~eLs~sN~kL~~L~~eL~eL 109 (141)
..|++||-+-.+-|++.+.|||..
T Consensus 12 ravenelhynkslleevkdelqkm 35 (38)
T 1c94_A 12 RAVENELHYNKSLLEEVKDELQKM 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 368999999889999999988754
No 66
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=20.49 E-value=1.8e+02 Score=18.69 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=23.2
Q ss_pred HHHHhhhhcHHHHHHHHHHHhHHHHHHHHH
Q psy1651 76 REVARDRKSLSDVATIVKKSNSKLSELHNE 105 (141)
Q Consensus 76 ~rAttdkk~r~~Ve~eLs~sN~kL~~L~~e 105 (141)
-+-++.+|-.+..+..|+..+.+|..|..+
T Consensus 7 eqWv~~Rkk~eeler~lrk~kk~iKklEde 36 (50)
T 1a92_A 7 EQWVSGRKKLEELERDLRKLKKKIKKLEED 36 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 344566777888899999999998887664
No 67
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.28 E-value=59 Score=23.16 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=15.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhccc
Q psy1651 87 DVATIVKKSNSKLSELHNELQELESQ 112 (141)
Q Consensus 87 ~Ve~eLs~sN~kL~~L~~eL~eLna~ 112 (141)
+-+.+++..+.+|..|..+|+.+.+.
T Consensus 72 ~~~~~l~~~q~~i~~lE~eL~~~r~e 97 (129)
T 3tnu_B 72 RGELALKDARNKLAELEEALQKAKQD 97 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33445666666666666666666544
No 68
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=20.21 E-value=2.3e+02 Score=23.99 Aligned_cols=65 Identities=18% Similarity=0.358 Sum_probs=36.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHhhhhcHHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q psy1651 45 EALPNKLEELKEHIRKEIRKELKI--KEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQII 114 (141)
Q Consensus 45 ~~~q~kLe~~ra~Ir~eI~KELKI--KeGAENL~rAttdkk~r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~ 114 (141)
..++.+++++++. |.++.|++.- |.|.+ +..-+.....+..+++....++..+.++|.++-.+++
T Consensus 40 r~~~~~~~~l~~~-~n~~sk~i~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip 106 (425)
T 2dq3_A 40 REIIKRLEALRSE-RNKLSKEIGKLKREGKD----TTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIP 106 (425)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHTTGGGSSCSC----TTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhhcCcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455555555554 3466677653 34421 1111233456667777777777777777776655554
No 69
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=20.19 E-value=1.5e+02 Score=24.70 Aligned_cols=27 Identities=4% Similarity=0.274 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhccc
Q psy1651 86 SDVATIVKKSNSKLSELHNELQELESQ 112 (141)
Q Consensus 86 ~~Ve~eLs~sN~kL~~L~~eL~eLna~ 112 (141)
..+...+...+.||+.|..++..+...
T Consensus 31 ~~Lq~~le~L~~KI~~LE~~v~~q~~~ 57 (323)
T 1lwu_B 31 RSMKSVLEHLRAKMQRMEEAIKTQKEL 57 (323)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556677788888888888766544
No 70
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=20.09 E-value=3.1e+02 Score=21.30 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=6.6
Q ss_pred chhhhhHHHHHHHH
Q psy1651 45 EALPNKLEELKEHI 58 (141)
Q Consensus 45 ~~~q~kLe~~ra~I 58 (141)
+..+.+++..++.|
T Consensus 66 ~~~~~~l~~~~a~l 79 (369)
T 4dk0_A 66 TTQINTLNTRKAAL 79 (369)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444455444444
No 71
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell adhesion; NMR {Homo sapiens} PDB: 2p03_A
Probab=20.08 E-value=1.4e+02 Score=25.49 Aligned_cols=60 Identities=28% Similarity=0.517 Sum_probs=37.0
Q ss_pred CcccchhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh----------hc--HHHHHHHHHHHhHHHHHHHHHHH
Q psy1651 41 NVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDR----------KS--LSDVATIVKKSNSKLSELHNELQ 107 (141)
Q Consensus 41 d~~~~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttdk----------k~--r~~Ve~eLs~sN~kL~~L~~eL~ 107 (141)
+..++.+..+...+|+..| -|+.|.++|.+.+..- |+ +=.++..=+++...|+.|+.||-
T Consensus 177 ~~~E~~~~~k~~~Lk~~~r-------~i~~~ydrL~rl~~~g~~~~~eF~EPkVq~LW~lA~~~NFT~~ELeSlK~EL~ 248 (323)
T 2p01_A 177 DIKGSVLHSRHTELKEKLR-------SINQGLDRLRRVSHQGYSTEAEFEEPRVIDLWDLAQSANLTDKELEAFREELK 248 (323)
T ss_dssp CCSSSSHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTSSCCSCSSCCTTHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred chhhhhHHhhhHHHHHHHH-------HHHhhHHHHHHHHhcCCCcccCccChHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3334566666666666666 4999999999987432 22 22344455556666666666654
No 72
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=20.06 E-value=4.3e+02 Score=23.23 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcccc
Q psy1651 86 SDVATIVKKSNSKLSELHNELQELESQI 113 (141)
Q Consensus 86 ~~Ve~eLs~sN~kL~~L~~eL~eLna~i 113 (141)
..+..+++....++.++.++|.++=.+|
T Consensus 81 ~~l~~~i~~le~~~~~~~~~~~~~l~~i 108 (485)
T 3qne_A 81 EKLSNEKKEIIEKEAEADKNLRSKINQV 108 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3555666666666666666666554444
Done!