RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1651
(141 letters)
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil,
signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP:
a.2.6.1
Length = 86
Score = 84.7 bits (209), Expect = 9e-23
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 29 YELSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDR-KSLSD 87
+ L + G ++A + +LE +E +R+EIRKELK+KEGAE LR D +SL
Sbjct: 1 WSLLEQLGLAGADLAAPGVQQQLELERERLRREIRKELKLKEGAENLRRATTDLGRSLGP 60
Query: 88 VATIVKKSNSKLSELHNELQELESQI 113
V +++ S+ +L LH +LQEL + +
Sbjct: 61 VELLLRGSSRRLDLLHQQLQELHAHV 86
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative
splicing, cell membrane, coiled coil, cytoplasm,
cytoskeleton, endocytosis; NMR {Homo sapiens}
Length = 98
Score = 37.6 bits (87), Expect = 1e-04
Identities = 15/77 (19%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 50 KLEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKK---SNSKLSELHNEL 106
+L++ E +E++KE+ +E +K+++V + D A++ + + S + L E+
Sbjct: 19 RLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEV 78
Query: 107 QELESQIIMTQGQTVTS 123
Q+ E+ + + + +++
Sbjct: 79 QKYEAWLAEAESRVLSN 95
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 2e-04
Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 13/109 (11%)
Query: 40 ENVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSN--- 96
E + ++ + L + + I+ E + ++ RDR L + + K N
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR--LYNDNQVFAKYNVSR 133
Query: 97 -SKLSELHNELQELES-QIIMTQG------QTVTSPTAANHEHGKSSDF 137
+L L EL + ++ G V +++ DF
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Score = 29.8 bits (66), Expect = 0.29
Identities = 16/123 (13%), Positives = 39/123 (31%), Gaps = 35/123 (28%)
Query: 7 LVQNDRYYWISSEGDYIRHPVLYELSHKYGFITENVAEEALPNKLE--ELKEHIRK-EI- 62
+++ W D +H +L+ + E +L N LE E ++ + +
Sbjct: 336 SIRDGLATW-----DNWKHVNCDKLTT--------IIESSL-NVLEPAEYRKMFDRLSVF 381
Query: 63 RKELKIKEG------AEKLREVARD------RKSLSDVATIVKKSNSKLSELHNELQELE 110
I + ++ + SL + K+ + + EL+
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL-----VEKQPKESTISIPSIYLELK 436
Query: 111 SQI 113
++
Sbjct: 437 VKL 439
Score = 27.1 bits (59), Expect = 2.4
Identities = 5/64 (7%), Positives = 17/64 (26%), Gaps = 6/64 (9%)
Query: 33 HKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIV 92
H + + E K ++ K+ + + + ++ I+
Sbjct: 2 HHHHHMDFETGEHQYQYK--DILSVFEDAFVDNFDCKDVQDMPKSILSKE----EIDHII 55
Query: 93 KKSN 96
+
Sbjct: 56 MSKD 59
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.5 bits (81), Expect = 0.002
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 17/83 (20%)
Query: 46 ALPNKLEELKEHIRK---EIRKELKIKEGAEK-----LREVARDRKSLSDVA-----TIV 92
A ++L + E IRK E RK L+ + A K RE A +K L + +
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKA--KKDLEEWNQRQSEQVE 132
Query: 93 K-KSNSKLSELHNELQELESQII 114
K K N+++++ Q+ ++ II
Sbjct: 133 KNKINNRIADKA-FYQQPDADII 154
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain,
helical, coiled coil, ATP-binding,
serine/threonine-protein kinase, phosphorylation; NMR
{Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Length = 81
Score = 34.3 bits (78), Expect = 0.002
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 46 ALPNKLEELKEHIRKEIRKELKIKEGAEKLREV-----ARDRKSLSDVATIVKKSNSKLS 100
+P + K++ ELK+K+GAE + + +DRK L +++ S +K+
Sbjct: 1 GIPATNLSRVAGLEKQLAIELKVKQGAENMIQTYSNGSTKDRKLLLTAQQMLQDSKTKID 60
Query: 101 ELHNELQELESQ 112
+ +L+
Sbjct: 61 IIRMQLRRALQA 72
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.8 bits (70), Expect = 0.12
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 43 AEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKS-LSDVATIVKKSNSKLSE 101
L NK+ +L+ I ++ ++ + E L L ++ S +
Sbjct: 922 LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKN 981
Query: 102 LHNELQELESQI 113
N + L+ +I
Sbjct: 982 ATNRVLSLQEEI 993
>2wvq_A Small S protein; prion-binding protein, prion, prion regulatory
domain, heter incompatibility, prion- binding protein;
2.00A {Podospora anserina} PDB: 2wvn_A 2wvo_A
Length = 225
Score = 30.1 bits (67), Expect = 0.21
Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 5/89 (5%)
Query: 30 ELSHKYGFITENVAEEALPNK-----LEELKEHIRKEIRKELKIKEGAEKLREVARDRKS 84
+ S +Y + + +K L + + + K A+K D KS
Sbjct: 100 KTSKRYELVADQQDLVVFEDKDMKPIGRALHRRLNDLVSRRQKQTSLAKKTAWALYDGKS 159
Query: 85 LSDVATIVKKSNSKLSELHNELQELESQI 113
L + V + +L +
Sbjct: 160 LEKIVDQVARFVDELEKAFPIEAVCHKLA 188
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 30.2 bits (68), Expect = 0.24
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 50 KLEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQEL 109
E K+ E + E ++ E + L KK ++ +L +L+E
Sbjct: 911 AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEK---KKMQQQMLDLEEQLEEE 967
Query: 110 ESQI 113
E+
Sbjct: 968 EAAR 971
Score = 29.8 bits (67), Expect = 0.28
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 43 AEEALPNKLEELKEHIRKEIRKELKIK-EGAEKLREVARDRKSLSDVATIVKKSNSKLSE 101
EE L +LK I EL+++ + EK R+ K + + +++E
Sbjct: 1022 EEEEKAKNLTKLKNKHESMI-SELEVRLKKEEKSRQELEKIK--RKLEGESSDLHEQIAE 1078
Query: 102 LHNELQELESQI 113
L ++ EL++Q+
Sbjct: 1079 LQAQIAELKAQL 1090
Score = 26.3 bits (58), Expect = 3.8
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 44 EEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELH 103
EE L L L++ ++ KI+E + ++ D +S +K LSE
Sbjct: 1094 EEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEEL 1153
Query: 104 NELQ-ELESQIIMTQGQ 119
L+ ELE + T Q
Sbjct: 1154 EALKTELEDTLDTTATQ 1170
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 29.9 bits (68), Expect = 0.26
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 51 LEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQEL 109
+ + + E+ L+ + E LR + L + +SN + ELHN + +L
Sbjct: 1 MGSMHAALSTEV-VHLR-QRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming,
thioester-forming, ligase; HET: COA PRX; 1.75A
{Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A*
2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Length = 652
Score = 29.8 bits (68), Expect = 0.30
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 35 YGFITENVAEEALPNKLEELKEHIRKEI 62
Y ++T N EE P E++ +RKEI
Sbjct: 560 YAYVTLNHGEEPSPELYAEVRNWVRKEI 587
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 29.1 bits (66), Expect = 0.39
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 49 NKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQE 108
+K+ LKE I +++++ A ++ + ++ I+ K + LHNELQE
Sbjct: 3 SKIAALKEKI-AALKEKI-----AALKEKIKDTELGMKELNEILIKEETVRRTLHNELQE 56
Query: 109 L 109
L
Sbjct: 57 L 57
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.41
Identities = 25/159 (15%), Positives = 54/159 (33%), Gaps = 49/159 (30%)
Query: 30 ELSHKY-GFITENVAEEALPNKLEELKEHIR---------KEI----RKELKIKEGA-EK 74
EL K+ G+++ V + + L + +I K L+ + K
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 75 LREVAR-------------DRKSLSDVATIVKKSNSKL---------SELH-NELQEL-- 109
+E+ + D+KS S + V + N++L ++ + EL++L
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 110 -----ESQIIMTQGQT----VTSPTAANHEHGKSSDFLS 139
+I +T + + A + + L
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Score = 26.2 bits (57), Expect = 5.2
Identities = 18/88 (20%), Positives = 26/88 (29%), Gaps = 35/88 (39%)
Query: 84 SLSDVATIVKKSNSKLSE-------LHN------------ELQELESQIIMTQGQTVTSP 124
+ V V K+NS L L N L L + + +P
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL-----RKAKAP 399
Query: 125 TAAN-----HEHGK---SSDFL---SPF 141
+ + K S+ FL SPF
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASPF 427
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 28.7 bits (64), Expect = 0.62
Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 41 NVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDV 88
++ + L + +++ R+ I ++ I + K RE K +
Sbjct: 349 SILVQELVKLTKNHQKN-REAINDDV-IAKFTNKSREQL--LKLFINK 392
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain,
fusion protein, maltose binding protein, HYDR; HET: MLR
TAR; 2.25A {Mycobacterium tuberculosis}
Length = 141
Score = 27.6 bits (62), Expect = 0.83
Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 16/89 (17%)
Query: 27 VLYELSHKYGFITENVAE-EALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKSL 85
VL E G T NVAE L L++ + E V D K +
Sbjct: 33 VLAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEA--------------AVLMDSKLV 78
Query: 86 SD-VATIVKKSNSKLSELHNELQELESQI 113
+ ++ K + L +L+ + Q L SQ
Sbjct: 79 VEQMSGRWKVKHPDLLKLYVQAQALASQF 107
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
pneumoniae}
Length = 348
Score = 28.0 bits (63), Expect = 0.99
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 35 YGFITENVAEEALPNKLEELKEHIRKEIRKELK--IKEGAEKLREVARDRKSLSDVATIV 92
Y + + E A N L ++ + R+++ ++ G + + A R +L+
Sbjct: 284 YLDLKNALTE-ATVNLLVNIQRKREQISREQVFNCLQAGKNQAQATA--RTTLALFYDGF 340
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of
RNA/DNA hybrid; 1.40A {Uncultured organism}
Length = 140
Score = 27.5 bits (62), Expect = 1.2
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 27 VLYELSHKYGFITENVAE-EALPNKLEELKEHIRKEIRKELKIK 69
L+E S G T NVAE EAL LE+L+ K + E++++
Sbjct: 32 TLHESSAYIGETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVR 75
>3udf_A Penicillin-binding protein 1A; transglycosylase, transpeptidase;
HET: MES; 1.70A {Acinetobacter baumannii} PDB: 3udi_A*
3udx_A* 3ue0_A* 3ue1_A*
Length = 731
Score = 27.7 bits (62), Expect = 1.3
Identities = 9/53 (16%), Positives = 23/53 (43%), Gaps = 10/53 (18%)
Query: 24 RHPVLYELSHKYGFITENVAEEAL---------PNKLEELKEHIRKEIRKELK 67
R+ +L + + G+I++ ++A+ L + + + +R EL
Sbjct: 195 RNWILGRM-LQLGYISQAEYQKAVAEPINLNMPNRDLNNIHPYAGEMVRSELV 246
>3eo8_A BLUB-like flavoprotein; YP_001089088.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: FMN; 1.74A {Clostridium difficile 630}
Length = 219
Score = 27.5 bits (61), Expect = 1.3
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 15/49 (30%)
Query: 60 KEIRKELKIKEGAEKLREV---------------ARDRKSLSDVATIVK 93
EI L+ + G EK + +K + ++ T +K
Sbjct: 171 DEIEAVLEAETGFEKGEYFLGAMLALGVPEDNLKSPSKKPVEEICTFIK 219
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold,
ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Length = 997
Score = 27.8 bits (62), Expect = 1.4
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 52 EELKEHIRKEIRKELKIKE---GAEKLREVAR 80
EE E + + K + +E +R V R
Sbjct: 840 EEAVERLVEAALKAYEAREAELSPPLMRAVER 871
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium,
metal-binding, thiamine pyrophosphate, transferase; HET:
T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6
c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Length = 669
Score = 27.8 bits (63), Expect = 1.4
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 26 PVLYELSHKYGFITENVAEEALPNKLEELKEH 57
+L+E ++GF +NV +A L H
Sbjct: 642 ELLFE---EFGFTVDNVVAKAK-ELLHHHHHH 669
>2jch_A Penicillin-binding protein 1B; peptidoglycan synthesis
multifunctional enzyme, cell WALL, peptidoglycan, gamma
lactam antibiotics; HET: PL7; 2.4A {Streptococcus
pneumoniae} PDB: 2jci_A* 2je5_A*
Length = 720
Score = 26.6 bits (59), Expect = 3.1
Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 6/102 (5%)
Query: 24 RHPVLYELSHKYGFITENVAEEAL--PNKLEELKEHIRKEIRKELKIKEGAEKLREVARD 81
VLY + ++ G ++++ + K + L I ++ + +E D
Sbjct: 224 AKAVLYSM-YRTGALSKDEYSQYKDYDLKQDFLPSGTVTGISQDYLYFTTLAEAQERMYD 282
Query: 82 RKSLSDVATIVKKSNSKLSELHNELQELESQIIMTQGQTVTS 123
+ D + + N + + +L + I G +T+
Sbjct: 283 YLAQRDNVSAKELKNEATQKFYRDLAA---KEIENGGYKITT 321
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase,
PSI-2, protein structure initiative; 1.82A {Homo
sapiens}
Length = 307
Score = 26.2 bits (58), Expect = 4.1
Identities = 5/41 (12%), Positives = 19/41 (46%)
Query: 52 EELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIV 92
EEL E+++ + ++ + + + S +++ ++
Sbjct: 254 EELCEYVKSRLEVSDDLENVCNWVVDTCLHKGSRDNMSIVL 294
>1mqm_B Hemagglutinin HA2 chain; influenza virus, viral protein; HET: NAG
BMA MAN SIA GAL; 2.60A {Influenza a virus} SCOP: h.3.1.1
PDB: 1mql_B* 1mqn_B* 2l4g_A
Length = 221
Score = 26.1 bits (57), Expect = 4.2
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 88 VATIVKKSNSKLSELHNELQELESQIIMTQ 117
+ +++K+N K ++ E E+E +I +
Sbjct: 52 LNRVIEKTNEKFHQIEKEFSEVEGRIQDLE 81
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell
division, chapero isomerase, rotamase,
ribonucleoprotein, binding; 3.40A {Thermotoga maritima}
PDB: 3gu0_A
Length = 433
Score = 26.1 bits (58), Expect = 4.3
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 51 LEELKEHIRKEIRKELKIKEGAEKLREV 78
LE+LKE ++KE ++ ++ ++
Sbjct: 248 LEQLKESLKKEGKEIYDVEMKESMREQL 275
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin,
hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1
d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A
Length = 382
Score = 26.3 bits (58), Expect = 4.6
Identities = 9/65 (13%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 52 EELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIV---KKSNSKLSELHNELQE 108
EEL + +R + +++ ++ + + S +++ I+ + E + E
Sbjct: 248 EELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSRDNMSVILICFPNAPKVSPEAVKKEAE 307
Query: 109 LESQI 113
L+ +
Sbjct: 308 LDKYL 312
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 25.9 bits (56), Expect = 4.8
Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 40 ENVAEEALPNKLEELKEHIRKEIRKELKIKE--GAEKLREVARDRKSLSDVATIVKKSNS 97
+ + L EE +EH+ K + E+++++ + +V + + S +++ ++
Sbjct: 310 GQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKK 369
Query: 98 KLSELHNELQELESQI 113
L H EL+E Q
Sbjct: 370 NLEAQHKELEEKRRQF 385
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 26.1 bits (56), Expect = 4.9
Identities = 12/70 (17%), Positives = 30/70 (42%)
Query: 44 EEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELH 103
E+ + K +EH+++ K + K +E K + + + +
Sbjct: 514 EQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMK 573
Query: 104 NELQELESQI 113
NE+Q+L++++
Sbjct: 574 NEIQDLQTKM 583
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage
T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Length = 290
Score = 25.7 bits (57), Expect = 5.2
Identities = 5/43 (11%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 51 LEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVK 93
+ ++ + + + + K + E+ L D+ T
Sbjct: 226 VLDIIDQL--PLPGKQKYIQNLNASEELLFRNLILVDLPTYCV 266
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 26.0 bits (58), Expect = 5.2
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Query: 45 EALPNKLEELKEHIRKEIRKELK-----IKEGAEKLREVARDRKSLSDV 88
+ + KL + E+ ++I ++ I EG +K REVA K++ +V
Sbjct: 287 KNMKRKLAPIWEN-FRKIDEDPHYVDDVIMEGTKKAREVA--AKTMEEV 332
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, rossmann
fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Length = 341
Score = 26.0 bits (58), Expect = 5.4
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 29 YELSHKYGFITENVAEEALPNKLEELKEHIRKEI--RKELK--IKEGAEKLREVARDRKS 84
Y YG ++V E A+ LE ++ ++ R+ L +++GAEK A ++
Sbjct: 271 YAGVEMYGPFKKDVGE-AVVAMLEPVQAEYQRIRNDREYLNSVMRDGAEKASAKA--LQT 327
Query: 85 LSDVATIV 92
L V V
Sbjct: 328 LKKVYAAV 335
>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima}
Length = 170
Score = 25.4 bits (56), Expect = 5.5
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 51 LEELKEHIRKEIRKELKIKEGAEKLREV 78
LE+LKE ++KE ++ ++ ++
Sbjct: 6 LEQLKESLKKEGKEIYDVEMKESMREQL 33
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal
peptide digestion, bacterial membrane, hydrolase; 2.37A
{Bacillus subtilis}
Length = 240
Score = 25.7 bits (57), Expect = 6.0
Identities = 14/98 (14%), Positives = 33/98 (33%), Gaps = 22/98 (22%)
Query: 14 YWISSEGDYI---------------RHPVLYELSHKYGFITENVAE---EALPNKLEELK 55
Y+IS+ D I +L+ K G E + + + E+
Sbjct: 95 YYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSGAHADIMSPSREMT 154
Query: 56 EHIRKEIRKELKIKEGAEK-LREVARDRK-SLSDVATI 91
+ + ++ + E + +++ R ++V I
Sbjct: 155 KEEKNIMQSM--VDNSYEGFVDVISKGRGMPKAEVKKI 190
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA
synthesis, NUCL binding, magnesium; HET: DNA DOC TTD
DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A*
3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A*
1jih_A*
Length = 520
Score = 26.0 bits (56), Expect = 6.0
Identities = 16/104 (15%), Positives = 37/104 (35%), Gaps = 22/104 (21%)
Query: 28 LYELSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKEG-----------AEKLR 76
L ++ + E P+ +LKE + ++++ + AEKL
Sbjct: 323 LIDVLDLPHENSIKHIRETWPDNAGQLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLF 382
Query: 77 EVAR-----------DRKSLSDVATIVKKSNSKLSELHNELQEL 109
+++R KS+ + KS + + + + L+
Sbjct: 383 KLSRGRYGLPLSSRPVVKSMMSNKNLRGKSCNSIVDCISWLEVF 426
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 25.6 bits (57), Expect = 6.5
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 45 EALPNKLEELKEHIRKEIRKELK-----IKEGAEKLREVARDRKSLSDV 88
+ L L ++ R E ++ + EG + REVA ++L V
Sbjct: 297 DVLNGVLAPIRTR-RAEYERDPDAVLRFVTEGTARGREVA--AQTLGQV 342
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, AN recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP:
c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 25.7 bits (56), Expect = 6.6
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 41 NVAEEALPNKLEELKEHIRKEIRKEL-----KIKEGAEKLREVAR 80
E L + E + RKE+ E+ ++ + +++A
Sbjct: 385 KALIEVLQPLIAEHQAR-RKEVTDEIVKEFMTPRKLSFDFQKLAA 428
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase,
protein translocation, protein transport; 2.00A
{Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A
3bxz_A*
Length = 853
Score = 25.6 bits (57), Expect = 6.6
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 52 EELKEHIRKEIRKELKIKE---GAEKLREVAR 80
E L+E I + + + KE GAE +R +
Sbjct: 725 ETLRERILAQSIEVYQRKEEVVGAEMMRHFEK 756
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 6.8
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 7/34 (20%)
Query: 59 RKEIRKELKIKEGAEKLREVARDRK-SLSDVATI 91
++ ++K L + + KL A D +L+ AT+
Sbjct: 19 KQALKK-L---QASLKL--YADDSAPALAIKATM 46
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase,
chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1
d.241.2.1 d.26.1.1 PDB: 1l1p_A
Length = 392
Score = 25.7 bits (57), Expect = 6.9
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 51 LEELKEHIRKEIRKELKIKEGAEKLREV 78
++ LK +RK + +ELK A +
Sbjct: 266 VDALKAEVRKNMERELKQAIKARIKEQA 293
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Length = 739
Score = 25.7 bits (57), Expect = 7.2
Identities = 4/41 (9%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 51 LEELKEHIRKEIRKELK-----IKEGAEKLREVARDRKSLS 86
+ +++ + E + + +G + + +K L
Sbjct: 401 FDVPLSTVQEILELEKERYRTTVSKGTRLVERLVERKKKLE 441
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Length = 250
Score = 25.5 bits (55), Expect = 7.2
Identities = 11/70 (15%), Positives = 31/70 (44%)
Query: 44 EEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELH 103
E +E L ++ + + E L ++ R K + + T+ S +++L+
Sbjct: 137 EACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLY 196
Query: 104 NELQELESQI 113
+++ ++E +
Sbjct: 197 HQVSKIEWEY 206
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 25.5 bits (57), Expect = 7.4
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 62 IRKELKIKEGAEKLREVARDRKSL--SDVATIV 92
+RK+ K+ E EK V R K++ S+V +V
Sbjct: 233 MRKKGKVYETTEKY-SVLRALKAIDRSEVVAVV 264
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine
diphosphate binding domain, transferase; HET: TPP; 2.22A
{Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10
c.48.1.1
Length = 673
Score = 25.5 bits (57), Expect = 7.4
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 3/21 (14%)
Query: 26 PVLYELSHKYGFITENVAEEA 46
VLY+ K+G E V
Sbjct: 634 GVLYK---KFGITVEEVVRTG 651
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate,
plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1
Length = 675
Score = 25.5 bits (57), Expect = 7.7
Identities = 5/21 (23%), Positives = 10/21 (47%), Gaps = 3/21 (14%)
Query: 26 PVLYELSHKYGFITENVAEEA 46
+Y+ +YG E++ A
Sbjct: 655 GTIYK---EYGITVESIIAAA 672
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease,
double strand DNA repair, protein-DNA CO hydrolase-DNA
complex; HET: DNA; 2.80A {Bacillus subtilis} PDB:
3u44_A*
Length = 1232
Score = 25.7 bits (56), Expect = 7.7
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 52 EELKEHIRKEIRKELKIKEGAEKLREVARD 81
E+K I + + KEL + G+ +R
Sbjct: 71 AEMKHRIAEALEKELVQRPGSLHIRRQLSL 100
>3uk1_A Transketolase; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, thiamine
pyrophosphate; 2.15A {Burkholderia thailandensis} PDB:
3upt_A*
Length = 711
Score = 25.6 bits (57), Expect = 7.7
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
Query: 26 PVLYELSHKYGFITENVAEEAL 47
VL++ +GF E+V E A
Sbjct: 689 GVLFK---HFGFTVEHVIETAK 707
>2e6k_A Transketolase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 2.09A
{Thermus thermophilus}
Length = 651
Score = 25.5 bits (57), Expect = 7.8
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
Query: 26 PVLYELSHKYGFITENVAEEAL 47
P +YE + GF E VAE L
Sbjct: 630 PEVYE---RLGFTPERVAEAFL 648
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural GEN NPPSFA; 2.50A {Thermus
thermophilus}
Length = 337
Score = 25.2 bits (56), Expect = 7.8
Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 45 EALPNKLEELKEHIRKEIRKELK-----IKEGAEKLREVARDRKSLSDV 88
+ L L ++E + ++K+ + EGA++ R VA + ++ +V
Sbjct: 276 DHLMEALRPIRER-AEALKKDPDYVMDALLEGAKRARAVA--QATMEEV 321
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation,
ATPase, transmembrane transport, helicase-like motor
domain; HET: ADP; 2.60A {Mycobacterium tuberculosis}
SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB:
1nl3_A
Length = 922
Score = 25.7 bits (57), Expect = 8.1
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 7/36 (19%)
Query: 52 EELKEHIRKEIRKELKIKE-------GAEKLREVAR 80
EEL E + K+ + +E G +R++ R
Sbjct: 763 EELLEALLKDAERAYAAREAELEEIAGEGAMRQLER 798
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS,
induced FIT, ligase; HET: TYM; 1.72A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A*
1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A*
1d2r_A 3u1v_A
Length = 328
Score = 25.2 bits (56), Expect = 8.4
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 35 YGFITENVAEEALPNKLEELKEHIRKEIR--KELK--IKEGAEKLREVARDRKSLSDVAT 90
YG ++A+ + L ++E +EL + EGAEK VA + + +
Sbjct: 265 YGVFKADLAQ-VVIETLRPIQERY-HHWMESEELDRVLDEGAEKANRVA--SEMVRKMEQ 320
Query: 91 IV 92
+
Sbjct: 321 AM 322
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium
tuberculosis}
Length = 700
Score = 25.5 bits (57), Expect = 8.5
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 3/21 (14%)
Query: 26 PVLYELSHKYGFITENVAEEA 46
L+ +YGF E VA A
Sbjct: 677 KTLFR---EYGFTAEAVAAAA 694
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A
{Arabidopsis thaliana}
Length = 537
Score = 25.3 bits (56), Expect = 8.8
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
Query: 19 EGDYIRH--PVLYELSHKY 35
+G YIRH PVL ++ +Y
Sbjct: 434 DGKYIRHFLPVLKDMPKQY 452
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 25.3 bits (56), Expect = 8.9
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 50 KLEELKEHIRKEI---RKELKIKEGAEKLREVARDRKSLSDVATI 91
+E + ++ I KEL E + +E + + +++ +I
Sbjct: 141 GVESTIKFYKRRINKLMKEL---ESIKIFKEKSIESNKRNNIPSI 182
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag,
phosphorylation, gene regulation, signaling protein;
HET: TPO FAD; 2.30A {Drosophila melanogaster}
Length = 538
Score = 25.3 bits (56), Expect = 9.4
Identities = 5/19 (26%), Positives = 10/19 (52%), Gaps = 2/19 (10%)
Query: 19 EGDYIRH--PVLYELSHKY 35
+G YI+ P L + ++
Sbjct: 449 DGTYIKQYVPELMNVPKEF 467
>3l84_A Transketolase; TKT, structural genomics, center for structur
genomics of infectious diseases, csgid, transferase;
HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A*
3m34_A* 3m7i_A*
Length = 632
Score = 25.1 bits (56), Expect = 9.7
Identities = 4/22 (18%), Positives = 9/22 (40%), Gaps = 3/22 (13%)
Query: 26 PVLYELSHKYGFITENVAEEAL 47
++E ++GF + L
Sbjct: 612 KDVFE---RFGFSVSKLVNFIL 630
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis,
translation, class I tRNA synth rossman fold, high
motif, KMSKS motif; 2.80A {Bacillus subtilis}
Length = 388
Score = 25.3 bits (56), Expect = 9.7
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 35 YGFITENVAEEALPNKLEELKEHIRKEIR--KELK--IKEGAEKLREVARDRKSLSDVAT 90
YG ++AE + N L+ +++ E+ +EL + EGAE+ A K L +
Sbjct: 299 YGEFKGDLAE-VVVNALKPIQDRY-YELIESEELDRILDEGAERANRTA--NKMLKKMEN 354
Query: 91 IV 92
+
Sbjct: 355 AM 356
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid,
structural genomics, niaid, center for structural
genomics infectious diseases; 1.95A {Yersinia pestis}
Length = 346
Score = 25.2 bits (56), Expect = 9.8
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 35 YGFITENVAEEALPNKLEELKEHIRKEI--RKELK--IKEGAEKLREVARDRKSLSDVAT 90
YG + VA+ A+ L EL+E R L+ ++EGA K R A + +L+ V
Sbjct: 282 YGHLKGAVAD-AVSGMLSELQERYRTYREDEALLQDVMREGAAKARARA--QVTLAKVYE 338
Query: 91 IV 92
+
Sbjct: 339 AI 340
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis
of alginate, structural genomics; 1.70A {Thermus
thermophilus}
Length = 464
Score = 25.2 bits (56), Expect = 9.8
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 88 VATIVKKSNSKLSELHNELQEL 109
+ V + L+E E++ L
Sbjct: 355 LLESVAATGKDLAEQFKEVEAL 376
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure; HET: ADP TRP; 2.15A {Campylobacter jejuni
subsp} PDB: 3m5w_A*
Length = 322
Score = 25.2 bits (56), Expect = 9.8
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 40 ENVAEEALP--NKLEELKEHIRKEIRKELKIKEGAEKLREVAR 80
E V K EL E +++ L GA K R++A+
Sbjct: 271 ELVNAYFKEAREKYNELLEK-PSHLKEILD--FGATKARKIAQ 310
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A
{Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10
c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A*
1tkc_A*
Length = 680
Score = 25.1 bits (56), Expect = 9.9
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Query: 26 PVLYELSHKYGFITENVAEEA 46
P +++ +GF E VAE A
Sbjct: 643 PEVFK---FFGFTPEGVAERA 660
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.128 0.351
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,112,601
Number of extensions: 119124
Number of successful extensions: 585
Number of sequences better than 10.0: 1
Number of HSP's gapped: 572
Number of HSP's successfully gapped: 135
Length of query: 141
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 57
Effective length of database: 4,356,429
Effective search space: 248316453
Effective search space used: 248316453
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.5 bits)