RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1651
(141 letters)
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 86
Score = 91.8 bits (228), Expect = 6e-26
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 29 YELSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDR-KSLSD 87
+ L + G ++A + +LE +E +R+EIRKELK+KEGAE LR D +SL
Sbjct: 1 WSLLEQLGLAGADLAAPGVQQQLELERERLRREIRKELKLKEGAENLRRATTDLGRSLGP 60
Query: 88 VATIVKKSNSKLSELHNELQELESQI 113
V +++ S+ +L LH +LQEL + +
Sbjct: 61 VELLLRGSSRRLDLLHQQLQELHAHV 86
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 81
Score = 54.8 bits (132), Expect = 1e-11
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 47 LPNKLEELKEHIRKEIRKELKIKEGAEKLREV-----ARDRKSLSDVATIVKKSNSKLSE 101
+P + K++ ELK+K+GAE + + +DRK L +++ S +K+
Sbjct: 2 IPATNLSRVAGLEKQLAIELKVKQGAENMIQTYSNGSTKDRKLLLTAQQMLQDSKTKIDI 61
Query: 102 LHNELQELESQ 112
+ +L+
Sbjct: 62 IRMQLRRALQA 72
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 28.5 bits (63), Expect = 0.26
Identities = 12/65 (18%), Positives = 28/65 (43%)
Query: 49 NKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQE 108
KL E R+ +RK + + +++R + D+ + +L +L E++
Sbjct: 299 AKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEA 358
Query: 109 LESQI 113
L ++
Sbjct: 359 LSEKL 363
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 28.0 bits (61), Expect = 0.36
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 18/64 (28%)
Query: 51 LEELKEHIRKEIRK-ELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQEL 109
L + E + + + +++ E+L + +RK ELHN + +L
Sbjct: 1 LRQRTEELLRCNEQQAAELETCKEQLFQSNMERK-----------------ELHNTVMDL 43
Query: 110 ESQI 113
I
Sbjct: 44 RGNI 47
>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase
UGT71G1 {Medicago truncatula [TaxId: 3880]}
Length = 461
Score = 28.2 bits (61), Expect = 0.37
Identities = 5/30 (16%), Positives = 21/30 (70%)
Query: 52 EELKEHIRKEIRKELKIKEGAEKLREVARD 81
EE+++ ++ + K+ + + ++++E++R+
Sbjct: 411 EEIEKGLKDLMDKDSIVHKKVQEMKEMSRN 440
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 326
Score = 27.4 bits (60), Expect = 0.60
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 35 YGFITENVAEEALPNKLEELKEHIRKEI-RKELK--IKEGAEKLREVARDRKSLSDVATI 91
YG ++A+ + L ++E + +EL + EGAEK VA + + +
Sbjct: 265 YGVFKADLAQ-VVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVA--SEMVRKMEQA 321
Query: 92 V 92
+
Sbjct: 322 M 322
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 26.1 bits (57), Expect = 0.78
Identities = 9/57 (15%), Positives = 27/57 (47%)
Query: 57 HIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQI 113
H E R I + +L+++ ++ + + +++K+ + L + Q+L+ +
Sbjct: 10 HNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQEN 66
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 202
Score = 26.5 bits (57), Expect = 1.1
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 50 KLEELKEHIRKEIRKELKIKEGAEKLREV 78
K+EEL E I LK +EG E+L
Sbjct: 2 KVEELAESISSYAVGILK-EEGIEELFPP 29
>d1m8pa1 b.122.1.3 (A:1-170) ATP sulfurylase N-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 170
Score = 25.7 bits (56), Expect = 1.7
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 53 ELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNE 105
LK+ + ++ ++ ++ AE L V + L D+ I+ S L N+
Sbjct: 9 VLKDLLARDAPRQAELAAEAESLPAVTLTERQLCDLELIMNGGFSPLEGFMNQ 61
>d2exha2 b.67.2.1 (A:3-324) Beta-D-xylosidase N-terminal domain
{Geobacillus stearothermophilus [TaxId: 1422]}
Length = 322
Score = 25.7 bits (55), Expect = 2.2
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 9/39 (23%)
Query: 1 MNNPVY---------LVQNDRYYWISSEGDYIRHPVLYE 30
+ NP+ D YY S ++ +Y
Sbjct: 2 IKNPILTGFHPDPSICRVGDDYYIAVSTFEWFPGVRIYH 40
>d1w26a1 a.223.1.1 (A:248-432) Trigger factor, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 185
Score = 25.4 bits (55), Expect = 2.8
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 3/81 (3%)
Query: 51 LEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELE 110
+E L+ +RK + +ELK + + L I + SE+ ++
Sbjct: 16 VEGLRAEVRKNMERELKSAIRNRVKSQAI---EGLVKANDIDVPAALIDSEIDVLRRQAA 72
Query: 111 SQIIMTQGQTVTSPTAANHEH 131
+ + Q + P E
Sbjct: 73 QRFGGNEKQALELPRELFEEQ 93
>d1o17a2 c.27.1.1 (A:71-343) Anthranilate phosphoribosyltransferase
(TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 273
Score = 25.0 bits (54), Expect = 3.8
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 49 NKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKS 95
+++ + +E E L I++ +KL E+ ++ + TIV KS
Sbjct: 230 DRVGDFREGY--EYADHL-IEKSLDKLNEIISMNGDVTKLKTIVVKS 273
>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal domain
{Thermotoga maritima [TaxId: 2336]}
Length = 70
Score = 23.8 bits (52), Expect = 4.0
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 62 IRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQIIMT 116
++K I++G+ + + + + + I K L+ N L+ I T
Sbjct: 9 LKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLN--ANSLEAAMKIIEGT 61
>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 201
Score = 24.7 bits (54), Expect = 4.1
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 40 ENVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVAR 80
+ E ++LE KE +R R +L+I++ ++ E R
Sbjct: 98 DRQYMEGFNDELEAFKERVRG--RAKLRIEKAMKEYEEEER 136
>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 91
Score = 23.9 bits (52), Expect = 4.7
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 68 IKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQII 114
++ A +L+ + + E EL+EL + +
Sbjct: 44 LEALAGRLQGCLYRADM---LQQECEALLVDFPEQEKELRELSAWMA 87
>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase,
MSAT {Thermococcus profundus [TaxId: 49899]}
Length = 403
Score = 24.6 bits (52), Expect = 4.8
Identities = 10/60 (16%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Query: 5 VYLVQNDRYYWISSEGDYIRHPVLYELSHKYGFITENVAEEALPNKLEELKEHIRKEIRK 64
V V + ++ + + +R L+ + ++ E E + L E I++E+++
Sbjct: 355 VAYVPGEAFFVHRDKKNTMR------LN--FTYVPEETIREG----VRRLAETIKEEMKR 402
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco
(Nicotiana tabacum) [TaxId: 4097]}
Length = 197
Score = 24.4 bits (53), Expect = 5.1
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 28 LYELSHKYGFITENVAEEA-------LPNKLEELKEHIRKEIRKELKI 68
LYE SH +++ E+A L + LK +R+++ L+
Sbjct: 127 LYEASH-VRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQ 173
>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase
(decarboxylating) subunit 1 {Thermus thermophilus
[TaxId: 274]}
Length = 437
Score = 24.8 bits (53), Expect = 5.3
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 49 NKLEELKEHIRKEIRK-ELKIKEGAEKLREVARDRKSLSD 87
LE+L H+ KEI + + E + +V + + L+
Sbjct: 21 ASLEDLFAHLPKEILSPPIDLPEPLPEW-KVLEELRRLAA 59
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 61
Score = 23.1 bits (50), Expect = 6.0
Identities = 5/47 (10%), Positives = 19/47 (40%)
Query: 67 KIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQI 113
I + +L+++ + + +++K+ + L +L +
Sbjct: 3 SINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQEN 49
>d1pv5a_ d.251.1.1 (A:) Hypothetical protein YwqG {Bacillus
subtilis [TaxId: 1423]}
Length = 261
Score = 24.2 bits (52), Expect = 6.5
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 45 EALPNKLEELKEHIRKEIRKELKIKEGAEKL 75
LP K+ ++ + K ++ +K+ K
Sbjct: 2 NHLPEKMRPYRDLLEKSAKEYVKLNVRKGKT 32
>d1t11a1 a.223.1.1 (A:248-376) Trigger factor, C-terminal domain
{Vibrio cholerae [TaxId: 666]}
Length = 129
Score = 23.7 bits (51), Expect = 7.3
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 51 LEELKEHIRKEIRKELKIKEGAEKLREV 78
++ LK +RK + +ELK A +
Sbjct: 16 VDALKAEVRKNMERELKQAIKARIKEQA 43
>d1qwya_ b.84.3.2 (A:) Peptidoglycan hydrolase LytM
{Staphylococcus aureus [TaxId: 1280]}
Length = 270
Score = 24.2 bits (52), Expect = 7.4
Identities = 9/19 (47%), Positives = 9/19 (47%)
Query: 8 VQNDRYYWISSEGDYIRHP 26
V YY I S GDY P
Sbjct: 1 VSYGTYYTIDSNGDYHHTP 19
>d2gycd1 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherichia coli
[TaxId: 562]}
Length = 177
Score = 23.8 bits (51), Expect = 7.8
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 54 LKEHIRKEIRKELKIKEGAEKLREVARDRK 83
L ++ + E+ K+L + + +V R K
Sbjct: 2 LHDYYKDEVVKKLMTEFNYNSVMQVPRVEK 31
>d1vmga_ a.204.1.2 (A:) Hypothetical protein SSo12199 (SSo3215)
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 83
Score = 22.9 bits (49), Expect = 8.7
Identities = 9/44 (20%), Positives = 20/44 (45%)
Query: 65 ELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQE 108
+L++KE K++E+ ++ S + ++ EL L
Sbjct: 2 DLELKELQSKMKEMYFEKDSQRGIYATFTWLVEEVGELAEALLS 45
>d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 251
Score = 23.5 bits (51), Expect = 9.8
Identities = 7/46 (15%), Positives = 15/46 (32%)
Query: 24 RHPVLYELSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIK 69
+ K GF +++ + LEE I++ +
Sbjct: 86 KFDEFLNECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGFMVL 131
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.128 0.351
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 513,755
Number of extensions: 23541
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 57
Length of query: 141
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 64
Effective length of database: 1,350,386
Effective search space: 86424704
Effective search space used: 86424704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (22.5 bits)