Query psy16510
Match_columns 147
No_of_seqs 113 out of 1126
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 23:10:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16510.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16510hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k57_A Putative lipoprotein; s 85.9 1.4 4.7E-05 28.3 4.6 39 56-102 5-43 (61)
2 2rd1_A Putative outer membrane 85.8 1.5 5E-05 28.3 4.7 40 55-102 4-43 (62)
3 2rb6_A Uncharacterized protein 85.1 1.7 5.7E-05 27.9 4.7 39 56-102 5-43 (61)
4 2ra2_A Putative lipoprotein; X 83.4 1.2 4E-05 28.9 3.4 39 56-102 6-44 (64)
5 3bdu_A Putative lipoprotein; X 82.5 1.3 4.3E-05 28.5 3.3 39 56-102 5-43 (62)
6 2jn0_A Hypothetical lipoprotei 82.3 1.7 5.8E-05 27.8 3.9 39 56-102 5-43 (61)
7 3ca8_A Protein YDCF; two domai 40.4 28 0.00096 27.6 4.0 33 105-137 221-253 (266)
8 1twu_A Hypothetical protein YY 36.2 23 0.00077 23.6 2.5 18 86-104 116-133 (139)
9 1xvs_A Protein APAG; MCSG APC2 36.1 32 0.0011 24.6 3.4 22 81-102 92-113 (126)
10 3ega_A Pellino-2, protein pell 34.1 78 0.0027 25.5 5.6 53 60-112 38-92 (263)
11 2f1e_A Protein APAG; APAG prot 33.4 31 0.001 24.7 2.9 22 81-102 93-114 (127)
12 1tza_A APAG protein, SOR45; st 32.8 32 0.0011 24.9 2.9 22 81-102 92-113 (134)
13 3tue_A Tryparedoxin peroxidase 31.8 71 0.0024 24.5 5.0 37 62-104 129-165 (219)
14 1xq4_A Protein APAG; all beta 31.5 33 0.0011 25.0 2.8 22 81-102 97-118 (139)
15 4gym_A Glyoxalase/bleomycin re 29.4 46 0.0016 22.3 3.2 17 88-104 117-133 (149)
16 4dne_A Streptavidin; biotin, b 29.2 22 0.00077 27.1 1.6 25 6-30 2-26 (183)
17 3p34_A Serine/threonine-protei 27.1 90 0.0031 24.4 4.9 41 53-98 58-98 (232)
18 2d7n_A Filamin-C; beta-sandwic 25.2 48 0.0016 22.0 2.6 27 94-121 44-75 (93)
19 3n3f_A Collagen alpha-1(XV) ch 24.9 70 0.0024 19.6 3.1 34 83-120 18-53 (54)
20 3rri_A Glyoxalase/bleomycin re 23.6 72 0.0025 20.7 3.3 20 88-107 112-131 (135)
No 1
>2k57_A Putative lipoprotein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pseudomonas syringae PV} SCOP: b.38.1.6
Probab=85.95 E-value=1.4 Score=28.28 Aligned_cols=39 Identities=13% Similarity=0.207 Sum_probs=28.9
Q ss_pred EEEeeCCceeeeecceecCCCCCcccccceeeEEEEECCCCcEEEEE
Q psy16510 56 YSYETGNGIAANEQGYLKNPGQKDLEAQTAQGQFTYTAPDGTPITVQ 102 (147)
Q Consensus 56 ~~Ye~~dG~~~~E~G~~k~~g~~~~~~~~v~GsYsy~~pdG~~~~V~ 102 (147)
|--.+.||....-.|..+ .-.-.|.|+|.|.+|+.++++
T Consensus 5 yvitt~DG~~IvT~gKP~--------~D~dTGmysY~D~~G~~~qIn 43 (61)
T 2k57_A 5 TVITLNDGREIQAVDTPK--------YDEESGFYEFKQLDGKQTRIN 43 (61)
T ss_dssp EEEEESSSCEEEESSCCE--------ECTTTCEEEEEBTTSCEEEEE
T ss_pred eEEEeCCCcEEEcCCCcc--------ccCCCCCEEEEcCCCCEEEEc
Confidence 444677888777776654 234579999999999988875
No 2
>2rd1_A Putative outer membrane lipoprotein; X-RAY, NESG, Q7CQI7, STR87A, structural genomics, PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium LT2} SCOP: b.38.1.6
Probab=85.76 E-value=1.5 Score=28.26 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=29.7
Q ss_pred eEEEeeCCceeeeecceecCCCCCcccccceeeEEEEECCCCcEEEEE
Q psy16510 55 RYSYETGNGIAANEQGYLKNPGQKDLEAQTAQGQFTYTAPDGTPITVQ 102 (147)
Q Consensus 55 ~~~Ye~~dG~~~~E~G~~k~~g~~~~~~~~v~GsYsy~~pdG~~~~V~ 102 (147)
.|--.+.||....-.|..+ .-.-.|.|+|.+.+|+.++++
T Consensus 4 ~yvitt~DG~~IvT~gKP~--------~D~dTGm~sY~D~~G~~~qIn 43 (62)
T 2rd1_A 4 NYVMTTKNGQTIVTQGKPQ--------LDKETGMTSYTDQEGNQREIN 43 (62)
T ss_dssp EEEEEETTSCEEEEESCCE--------EETTTTEEEEECTTSCEEEEE
T ss_pred ceEEEeCCCcEEEcCCCcc--------eeCCCCCEEEEcCCCCEEEEc
Confidence 3445678888877777653 234579999999999988875
No 3
>2rb6_A Uncharacterized protein; NESG, Q8EI81_sheon, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.50A {Shewanella oneidensis} SCOP: b.38.1.6
Probab=85.09 E-value=1.7 Score=27.90 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=28.7
Q ss_pred EEEeeCCceeeeecceecCCCCCcccccceeeEEEEECCCCcEEEEE
Q psy16510 56 YSYETGNGIAANEQGYLKNPGQKDLEAQTAQGQFTYTAPDGTPITVQ 102 (147)
Q Consensus 56 ~~Ye~~dG~~~~E~G~~k~~g~~~~~~~~v~GsYsy~~pdG~~~~V~ 102 (147)
|--.+.||....-.|..+ ...-.|.|+|.|.+|+.+.++
T Consensus 5 yvitT~DG~~IvT~GKP~--------~D~dTGm~sY~D~~G~~~qIn 43 (61)
T 2rb6_A 5 YIMSTKDGKMITSDSKPK--------LDKTTGMYLYYDEDGREVMIK 43 (61)
T ss_dssp EEEEETTSCEEEESSCCE--------EETTTTEEEEECTTSCEEEEE
T ss_pred EEEEeCCCcEEEcCCCcc--------ccCCCCCEEEEcCCCCEEEEc
Confidence 444677888776666643 234579999999999988775
No 4
>2ra2_A Putative lipoprotein; X-RAY, NESG, STR88A, Q7CPV8, structural genomics, PSI-2, protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.38.1.6
Probab=83.41 E-value=1.2 Score=28.90 Aligned_cols=39 Identities=18% Similarity=0.405 Sum_probs=28.4
Q ss_pred EEEeeCCceeeeecceecCCCCCcccccceeeEEEEECCCCcEEEEE
Q psy16510 56 YSYETGNGIAANEQGYLKNPGQKDLEAQTAQGQFTYTAPDGTPITVQ 102 (147)
Q Consensus 56 ~~Ye~~dG~~~~E~G~~k~~g~~~~~~~~v~GsYsy~~pdG~~~~V~ 102 (147)
|--.+.||....-.|..+ .-.-.|.|+|.|.+|+.++++
T Consensus 6 yVitt~DG~~IvT~GKP~--------~D~dTGm~sY~D~~G~~~qIn 44 (64)
T 2ra2_A 6 YVMHTNDGRSIVTDGKPQ--------TDNDTGMISYKDANGNKQQIN 44 (64)
T ss_dssp EEEEETTSCEEECSSCCE--------ECTTTCSEEEECTTSCEEEEC
T ss_pred EEEEeCCCcEEEcCCCcc--------ccCCCCCEEEEcCCCCEEEEc
Confidence 445678888776666643 234579999999999988764
No 5
>3bdu_A Putative lipoprotein; X_RAY, NESG, Q6D8G1, structural genomics, PSI-2, protein structure initiative; 1.90A {Pectobacterium atrosepticum SCRI1043} SCOP: b.38.1.6
Probab=82.47 E-value=1.3 Score=28.54 Aligned_cols=39 Identities=23% Similarity=0.395 Sum_probs=28.9
Q ss_pred EEEeeCCceeeeecceecCCCCCcccccceeeEEEEECCCCcEEEEE
Q psy16510 56 YSYETGNGIAANEQGYLKNPGQKDLEAQTAQGQFTYTAPDGTPITVQ 102 (147)
Q Consensus 56 ~~Ye~~dG~~~~E~G~~k~~g~~~~~~~~v~GsYsy~~pdG~~~~V~ 102 (147)
|--.+.||....-.|..+ ...-.|.|+|.|.+|+.++++
T Consensus 5 yvitt~DG~~IvT~gKP~--------~D~dTGmysY~D~~G~~~qIn 43 (62)
T 3bdu_A 5 YVLHTNDGRTIVAEGKPK--------VDDETGMISYTDAYGQQQQIN 43 (62)
T ss_dssp EEEEETTSCEEEEESCCE--------ECTTTSSEEEEBTTSCEEEEC
T ss_pred eEEEECCCcEEEcCCCcc--------eeCCCCCEEEEcCCCCEEEEc
Confidence 445678888877777654 234579999999999988764
No 6
>2jn0_A Hypothetical lipoprotein YGDR; solution structure, PSI-2 target, structural genomics, protein structure initiative; NMR {Escherichia coli} SCOP: b.38.1.6 PDB: 3fif_A
Probab=82.30 E-value=1.7 Score=27.84 Aligned_cols=39 Identities=18% Similarity=0.361 Sum_probs=27.9
Q ss_pred EEEeeCCceeeeecceecCCCCCcccccceeeEEEEECCCCcEEEEE
Q psy16510 56 YSYETGNGIAANEQGYLKNPGQKDLEAQTAQGQFTYTAPDGTPITVQ 102 (147)
Q Consensus 56 ~~Ye~~dG~~~~E~G~~k~~g~~~~~~~~v~GsYsy~~pdG~~~~V~ 102 (147)
|--.+.||....-.|..+ ...-.|.|+|.|.+|+.++++
T Consensus 5 yvitT~DG~~IvT~GKP~--------~D~dTGm~sY~D~~G~~~qIn 43 (61)
T 2jn0_A 5 YVMATKDGRMILTDGKPE--------IDDDTGLVSYHDQQGNAMQIN 43 (61)
T ss_dssp CEEEETTSCEEEBCCCCE--------EETTTTEEEEEBTTSCEEEEE
T ss_pred EEEEeCCCcEEEcCCCcc--------ccCCCCCEEEEcCCCCEEEEc
Confidence 334577787766666543 234579999999999988875
No 7
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genom structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli}
Probab=40.37 E-value=28 Score=27.59 Aligned_cols=33 Identities=15% Similarity=0.377 Sum_probs=25.7
Q ss_pred cCCCCcccccCCCCCCCCCcHHHHHHHHHHhcC
Q psy16510 105 ADETGFHASGAHLPTPPPIPEAILKSLQQVQVS 137 (147)
Q Consensus 105 ADe~Gf~p~g~hlP~~pp~p~~i~~al~~~~~~ 137 (147)
-|+|||-|.|...=..-+||++|..|.+.+.++
T Consensus 221 ~~~~gYgp~~~gf~~~~~iP~~V~~A~~~l~~~ 253 (266)
T 3ca8_A 221 DDSDGYGPRGRDFIVHVDFPAEVIHAWQTLKHD 253 (266)
T ss_dssp CSTTSSSTTTTCSSCCCCCCHHHHHHHHHHHTC
T ss_pred hcccccCccCCCccccCcCCHHHHHHHHHHHHh
Confidence 568999998775444446999999999988765
No 8
>1twu_A Hypothetical protein YYCE; structural genomics, protein structure initiative, MCSG, DUP of the alpha-beta sandwichs. bacillus subtilis, PSI; 2.00A {Bacillus subtilis} SCOP: d.32.1.8
Probab=36.19 E-value=23 Score=23.62 Aligned_cols=18 Identities=28% Similarity=0.224 Sum_probs=14.4
Q ss_pred eeEEEEECCCCcEEEEEEE
Q psy16510 86 QGQFTYTAPDGTPITVQWF 104 (147)
Q Consensus 86 ~GsYsy~~pdG~~~~V~Y~ 104 (147)
.|.| +.||||..+++...
T Consensus 116 ~g~~-~~DPdG~~iel~~~ 133 (139)
T 1twu_A 116 GGVT-IEDPDGWRIVFMNS 133 (139)
T ss_dssp SEEE-EECTTCCEEEEESS
T ss_pred CCeE-EECCCCCEEEEEEc
Confidence 4668 99999999988643
No 9
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=36.06 E-value=32 Score=24.56 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=17.9
Q ss_pred cccceeeEEEEECCCCcEEEEE
Q psy16510 81 EAQTAQGQFTYTAPDGTPITVQ 102 (147)
Q Consensus 81 ~~~~v~GsYsy~~pdG~~~~V~ 102 (147)
..+.++|+|.++++||....|.
T Consensus 92 p~G~M~G~y~m~~~~G~~F~v~ 113 (126)
T 1xvs_A 92 PVGVMQGQYLMIDEQGESFTVE 113 (126)
T ss_dssp SEEEEEEEEEEECTTSCEEEEE
T ss_pred CcEEEEEEEEEEECCCCEEEEE
Confidence 3478999999999999876653
No 10
>3ega_A Pellino-2, protein pellino homolog 2; FHA domain, E3 ubiquitin ligase, substrate binding phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3egb_A
Probab=34.10 E-value=78 Score=25.48 Aligned_cols=53 Identities=17% Similarity=0.323 Sum_probs=35.8
Q ss_pred eCCceeeeecceecCCCCCcccccceeeEEEEECCCCcEEEEEEEcCCC--Cccc
Q psy16510 60 TGNGIAANEQGYLKNPGQKDLEAQTAQGQFTYTAPDGTPITVQWFADET--GFHA 112 (147)
Q Consensus 60 ~~dG~~~~E~G~~k~~g~~~~~~~~v~GsYsy~~pdG~~~~V~Y~ADe~--Gf~p 112 (147)
..||++....=....+.....-...-+.|-||+..-.+.+.|.|+.|++ =||.
T Consensus 38 ~aNGVkpS~~~~v~~p~~~kav~~~~~Hsisytlsr~~~VvVeY~~D~~tDMFQI 92 (263)
T 3ega_A 38 KANGVKPSTVHMISTPQASKAISCKGQHSISYTLSRNQTVVVEYTHDKDTDMFQV 92 (263)
T ss_dssp SCCEEEEEEEEEEECCTTCCCCCBTTBEEEEEECSSSEEEEEEEEEETTEEEEEE
T ss_pred ccCCccccceEEecCcccchhhhccccceEEEEecCCceeeeeeecCCCcchhhh
Confidence 4677766554433332222112235689999999999999999999974 6777
No 11
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=33.45 E-value=31 Score=24.67 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=17.8
Q ss_pred cccceeeEEEEECCCCcEEEEE
Q psy16510 81 EAQTAQGQFTYTAPDGTPITVQ 102 (147)
Q Consensus 81 ~~~~v~GsYsy~~pdG~~~~V~ 102 (147)
..+.++|+|.++++||....|.
T Consensus 93 p~G~M~G~y~m~~~~G~~F~v~ 114 (127)
T 2f1e_A 93 EQGQMQGHYDMVADDGTEFIAP 114 (127)
T ss_dssp SCEEEEEEEEEEETTCCEEEEE
T ss_pred CcEEEEEEEEEEECCCCEEEEE
Confidence 3478999999999999876653
No 12
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=32.77 E-value=32 Score=24.90 Aligned_cols=22 Identities=9% Similarity=0.150 Sum_probs=17.9
Q ss_pred cccceeeEEEEECCCCcEEEEE
Q psy16510 81 EAQTAQGQFTYTAPDGTPITVQ 102 (147)
Q Consensus 81 ~~~~v~GsYsy~~pdG~~~~V~ 102 (147)
..+.++|+|.++++||....|.
T Consensus 92 p~G~M~G~y~m~~~~G~~F~v~ 113 (134)
T 1tza_A 92 PFGIMYGTYGMVSESGEHFNAI 113 (134)
T ss_dssp SEEEEEEEEEEEETTCCEEEEE
T ss_pred CceEEEEEEEEEECCCCEEEEE
Confidence 3478999999999999876653
No 13
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=31.79 E-value=71 Score=24.55 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=25.0
Q ss_pred CceeeeecceecCCCCCcccccceeeEEEEECCCCcEEEEEEE
Q psy16510 62 NGIAANEQGYLKNPGQKDLEAQTAQGQFTYTAPDGTPITVQWF 104 (147)
Q Consensus 62 dG~~~~E~G~~k~~g~~~~~~~~v~GsYsy~~pdG~~~~V~Y~ 104 (147)
++...+.-|.+... .+...||.| .|||||+.+.+.+.
T Consensus 129 ~~~va~~yGv~~~~-----~g~~~R~tF-iIDp~g~Ir~~~~~ 165 (219)
T 3tue_A 129 TKNIARSYGVLEES-----QGVAYRGLF-IIDPHGMLRQITVN 165 (219)
T ss_dssp TSHHHHHTTCEETT-----TTEECEEEE-EECTTSBEEEEEEE
T ss_pred ccHHHHHcCCcccC-----CCeeEEEEE-EECCCCeEEEEEEe
Confidence 45555555665432 456789998 79999988776543
No 14
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=31.45 E-value=33 Score=24.96 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=17.8
Q ss_pred cccceeeEEEEECCCCcEEEEE
Q psy16510 81 EAQTAQGQFTYTAPDGTPITVQ 102 (147)
Q Consensus 81 ~~~~v~GsYsy~~pdG~~~~V~ 102 (147)
..+.++|+|.++++||....|.
T Consensus 97 p~G~M~G~y~m~~~~G~~F~v~ 118 (139)
T 1xq4_A 97 PIGTMRGTYHCVGENGIPFEVP 118 (139)
T ss_dssp SEEEEEEEEEEEETTSCEEEEE
T ss_pred CceEEEEEEEEEeCCCCEEEEE
Confidence 3478999999999999876653
No 15
>4gym_A Glyoxalase/bleomycin resistance protein/dioxygena; PSI-biology, midwest center for structural genomics, MCSG, oxidoreductase; HET: MSE; 1.56A {Conexibacter woesei}
Probab=29.45 E-value=46 Score=22.33 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=13.7
Q ss_pred EEEEECCCCcEEEEEEE
Q psy16510 88 QFTYTAPDGTPITVQWF 104 (147)
Q Consensus 88 sYsy~~pdG~~~~V~Y~ 104 (147)
+..+.||||..+++.|-
T Consensus 117 ~~~f~DPDGn~iEi~~~ 133 (149)
T 4gym_A 117 GRSFHDLDGHLWEVMWM 133 (149)
T ss_dssp EEEEECTTCCEEEEEEE
T ss_pred EEEEEcCCCCEEEEEEE
Confidence 34588999999999874
No 16
>4dne_A Streptavidin; biotin, biotin-binding protein; HET: DTB; 1.88A {Streptomyces avidinii}
Probab=29.19 E-value=22 Score=27.15 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHHHHHhhccCCC
Q psy16510 6 KDIGALAISFVALFIAVVSAQRGPP 30 (147)
Q Consensus 6 ~~~~~~~~~i~~~~la~a~A~~~~~ 30 (147)
|+|+.+.|.+-+|+++.+.++++.|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~a~a~~ 26 (183)
T 4dne_A 2 RKIVVAAIAVSLTTVSITASASADP 26 (183)
T ss_dssp -------------------------
T ss_pred cchhHHHHHHHHHHHHHHhhhhcCc
Confidence 5677666666666666655554443
No 17
>3p34_A Serine/threonine-protein kinase PLK1; phosphoprotein binding domain, PLK1, kinase, transferase; HET: TPO; 1.40A {Homo sapiens} PDB: 3p2z_A* 3p2w_A* 3p35_A* 3p36_A* 3p37_A* 3q1i_A* 4e67_A* 4e9c_A* 4e9d_A* 2ogq_A 2ojs_A* 2ojx_A 3bzi_A* 3mhn_A* 3mhq_A 3mq8_B* 4h5x_B 4h70_B* 4h71_B* 4hco_B* ...
Probab=27.06 E-value=90 Score=24.43 Aligned_cols=41 Identities=22% Similarity=0.313 Sum_probs=26.6
Q ss_pred CeeEEEeeCCceeeeecceecCCCCCcccccceeeEEEEECCCCcE
Q psy16510 53 SYRYSYETGNGIAANEQGYLKNPGQKDLEAQTAQGQFTYTAPDGTP 98 (147)
Q Consensus 53 ~Y~~~Ye~~dG~~~~E~G~~k~~g~~~~~~~~v~GsYsy~~pdG~~ 98 (147)
.|-|+|.++||.. |.+=|.++.= .-..-.+.+.|+..+|+.
T Consensus 58 KYG~GYqLsdgsv----GVlFND~T~m-il~~~~~~v~Y~~~~~~~ 98 (232)
T 3p34_A 58 KYGLGYQLCDNSV----GVLFNDSTRL-ILYNDGDSLQYIERDGTE 98 (232)
T ss_dssp TTEEEEEETTSCE----EEEETTSCEE-EECTTSSEEEEECTTCCE
T ss_pred ccceEEEecCCcE----EEEEcCCceE-EEcCCCceEEEEcCCCcE
Confidence 6999999999985 6666655431 111224566777777754
No 18
>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=25.19 E-value=48 Score=22.02 Aligned_cols=27 Identities=44% Similarity=0.895 Sum_probs=20.6
Q ss_pred CCCcEEEEEEEcCCCCccc-----ccCCCCCCC
Q psy16510 94 PDGTPITVQWFADETGFHA-----SGAHLPTPP 121 (147)
Q Consensus 94 pdG~~~~V~Y~ADe~Gf~p-----~g~hlP~~p 121 (147)
.|| +|+|+|+..+.|-+. .+.|+|-.|
T Consensus 44 ~dG-tY~v~ytP~e~G~h~v~V~~~g~~I~GSP 75 (93)
T 2d7n_A 44 KDG-TITVRYAPTEKGLHQMGIKYDGNHIPGSP 75 (93)
T ss_dssp SSS-CEEEEECCSSCEEEEEEEEESSSCCTTCS
T ss_pred CCC-EEEEEEEccCCEEEEEEEEECCEeCCCCC
Confidence 456 589999999988766 477887654
No 19
>3n3f_A Collagen alpha-1(XV) chain; extracellular matrix, basement membrane, collagen trimerization domain, folding, association, chain selection helix; 2.00A {Homo sapiens}
Probab=24.86 E-value=70 Score=19.58 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=23.2
Q ss_pred cceeeEEEEECCCCcEEEEEEEcCCCCcccc--cCCCCCC
Q psy16510 83 QTAQGQFTYTAPDGTPITVQWFADETGFHAS--GAHLPTP 120 (147)
Q Consensus 83 ~~v~GsYsy~~pdG~~~~V~Y~ADe~Gf~p~--g~hlP~~ 120 (147)
..-.|+-.|+...+.. |+-=.||+|-. |.++|-|
T Consensus 18 ~~~eGtL~yv~d~~eL----yiRVr~Gwr~v~Lg~~ip~p 53 (54)
T 3n3f_A 18 LVIEGTFIYLRDSTEF----FIRVRDGWKKLQLGELIPIP 53 (54)
T ss_dssp GSCTTEEEEETTTTEE----EEEETTEEEECCCCCCCCCC
T ss_pred cCCCeeEEEEEecceE----EEEEcCceeeeeccccccCC
Confidence 4556888888877753 44446888874 7777765
No 20
>3rri_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=23.56 E-value=72 Score=20.66 Aligned_cols=20 Identities=15% Similarity=0.487 Sum_probs=16.1
Q ss_pred EEEEECCCCcEEEEEEEcCC
Q psy16510 88 QFTYTAPDGTPITVQWFADE 107 (147)
Q Consensus 88 sYsy~~pdG~~~~V~Y~ADe 107 (147)
++.+.||||..+++....|+
T Consensus 112 ~~~~~DPdGn~iel~~~~~~ 131 (135)
T 3rri_A 112 TFFLIDPSNNLLEFKYYFDD 131 (135)
T ss_dssp EEEEECTTCCEEEEEEESSG
T ss_pred EEEEECCCCCEEEEEEECCh
Confidence 56788999999998776664
Done!