RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16510
(147 letters)
>gnl|CDD|215886 pfam00379, Chitin_bind_4, Insect cuticle protein. Many insect
cuticular proteins include a 35-36 amino acid motif
known as the R&R consensus. The extensive conservation
of this region led to the suggestion that it functions
to bind chitin. Provocatively, it has no sequence
similarity to the well-known cysteine-containing
chitin-binding domain found in chitinases and some
peritrophic membrane proteins. Chitin binding has been
shown experimentally for this region. Thus arthropods
have two distinct classes of chitin binding proteins,
those with the chitin-binding domain found in lectins,
chitinases and peritrophic membranes (cysCBD) and those
with the cuticular protein chitin-binding domain
(non-cysCBD).
Length = 51
Score = 58.0 bits (141), Expect = 1e-12
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 54 YRYSYETGNGIAANEQGYLKNPGQKDLEAQTAQGQFTYTAPDGTPITVQWFADETGF 110
Y + YET +G E+G + + +G ++Y PDG TV + ADE GF
Sbjct: 1 YSFGYETSDG-KTQEEGRGT-----EDDGGVVKGSYSYVDPDGKLRTVTYVADENGF 51
>gnl|CDD|227816 COG5529, COG5529, Pyocin large subunit [General function prediction
only].
Length = 326
Score = 30.8 bits (69), Expect = 0.25
Identities = 14/74 (18%), Positives = 20/74 (27%), Gaps = 2/74 (2%)
Query: 44 QNEPNQGDGSYRYSYETGNGIAANEQGYLKNPGQKDLE--AQTAQGQFTYTAPDGTPITV 101
+ E Q S + N + E GY+ + D + Q T P TP
Sbjct: 94 EPEYTQPRESLKVGKIGANNKNSTENGYVSAENRPDNRTLSCMENNQRTGNFPSWTPKNG 153
Query: 102 QWFADETGFHASGA 115
E
Sbjct: 154 GRNPKEPKDLNPTH 167
>gnl|CDD|234187 TIGR03369, cellulose_bcsE, cellulose biosynthesis protein BcsE.
This protein, called BcsE (bacterial cellulose synthase
E) or YhjS, is required for cellulose biosynthesis in
Salmonella enteritidis. Its role is this process across
multiple bacterial species is implied by the partial
phylogenetic profiling algorithm. Members are found in
the vicinity of other cellulose biosynthesis genes. The
model does not include a much less well-conserved
N-terminal region about 150 amino acids in length for
most members. Solano, et al. suggest this protein acts
as a protease [Cell envelope, Biosynthesis and
degradation of surface polysaccharides and
lipopolysaccharides].
Length = 322
Score = 30.0 bits (68), Expect = 0.44
Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 51 DGSYRYSYE---TGNGIAANEQGYLKNPGQKDLEAQTAQGQFTYTAPDGTPITVQWFADE 107
G Y + + + G+AANE L D AQ + + +DE
Sbjct: 21 QGQYLWDVDFWRSKTGVAANEVLML---RFDDNGWLLAQAEEPASLASSGAP----LSDE 73
Query: 108 TGFHASGAHLPTPPPIPE 125
S A L PP+PE
Sbjct: 74 DRVLVSRAALEGGPPLPE 91
>gnl|CDD|219241 pfam06958, Pyocin_S, S-type Pyocin. This family represents a
conserved region approximately 180 residues long within
bacterial S-type pyocins. Pyocins are polypeptide toxins
produced by, and active against, bacteria. S-type
pyocins cause cell death by DNA breakdown due to
endonuclease activity.
Length = 139
Score = 28.5 bits (64), Expect = 0.75
Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 84 TAQGQFTYTAPDGTPITVQWFADETGFHASGAHLPTPPPIPEA 126
G + +T T+ W + +P P P+
Sbjct: 52 AETGVYEFTLDAVPGRTILWTPASPPGDIP-SSTSSPAPPPDT 93
>gnl|CDD|216128 pfam00801, PKD, PKD domain. This domain was first identified in
the Polycystic kidney disease protein PKD1. This domain
has been predicted to contain an Ig-like fold.
Length = 70
Score = 27.4 bits (61), Expect = 0.99
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 88 QFTYTAPDGTPITVQW-FADETGFHASG 114
FT ++PDG+P+T W F D G ++G
Sbjct: 15 TFTASSPDGSPVTYSWDFGDGPGLTSTG 42
>gnl|CDD|217613 pfam03556, Cullin_binding, Cullin binding. This domain binds to
cullins and to Rbx-1, components of an E3 ubiquitin
ligase complex for neddylation. Neddylation is the
process by which the C-terminal glycine of the
ubiquitin-like protein Nedd8 is covalently linked to
lysine residues in a protein through an isopeptide bond.
The structure of this domain is composed entirely of
alpha helices.
Length = 117
Score = 27.9 bits (63), Expect = 1.1
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 18/56 (32%)
Query: 54 YRYSYETGNGIAANEQGYLKNPGQKDLEAQTAQGQ----FTYTAPDGTPITVQWFA 105
YR+++ + + GQK L+ +TA F P+ QW
Sbjct: 26 YRFTF-----------DFAREEGQKSLDLETAIEYWKLLFGSRTF---PLLDQWIE 67
>gnl|CDD|201668 pfam01219, DAGK_prokar, Prokaryotic diacylglycerol kinase.
Length = 104
Score = 27.4 bits (62), Expect = 1.5
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 3 KIEKDIGALAISFVALFIAVV 23
K KDI A A+ VA +AV+
Sbjct: 78 KRAKDIAAAAV-LVAAILAVI 97
>gnl|CDD|223888 COG0818, DgkA, Diacylglycerol kinase [Cell envelope biogenesis,
outer membrane].
Length = 123
Score = 27.2 bits (61), Expect = 1.9
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 3 KIEKDIGALAISFVALFIAVV 23
K KD+G+ A+ +LF +V
Sbjct: 92 KRAKDMGSAAVLIASLFAVIV 112
>gnl|CDD|234074 TIGR02966, phoR_proteo, phosphate regulon sensor kinase PhoR.
Members of this protein family are the regulatory
histidine kinase PhoR associated with the phosphate ABC
transporter in most Proteobacteria. Related proteins
from Gram-positive organisms are not included in this
model. The phoR gene usually is adjacent to the response
regulator phoB gene (TIGR02154) [Signal transduction,
Two-component systems].
Length = 333
Score = 27.6 bits (62), Expect = 2.8
Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 91 YTAPDGTPITVQWFADETGFHAS 113
YT GT ITV+W D G S
Sbjct: 244 YTPEGGT-ITVRWRRDGGGAEFS 265
>gnl|CDD|183767 PRK12817, flgG, flagellar basal body rod protein FlgG; Reviewed.
Length = 260
Score = 27.0 bits (60), Expect = 4.4
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 45 NEPNQGDGSYRYSYETGNGIAANEQGYLKNPGQKDLEAQTAQGQFTYTAPDGT 97
++P G+ + N I N+QG L G K A +G F DGT
Sbjct: 58 DKPEIITGT---GVKATNWIRDNQQGNLLTTGNKTDLAIDGEGFFRVIMADGT 107
>gnl|CDD|220672 pfam10277, Frag1, Frag1/DRAM/Sfk1 family. This family includes
Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor
activating protein 1) is a protein that is conserved
from fungi to humans. There are four potential
iso-prenylation sites throughout the peptide, viz CILW,
CIIW and CIGL. Frag1 is a membrane-spanning protein
that is ubiquitously expressed in adult tissues
suggesting an important cellular function. Dram is a
family of proteins conserved from nematodes to humans
with six hydrophobic transmembrane regions and an
Endoplasmic Reticulum signal peptide. It is a lysosomal
protein that induces macro-autophagy as an effector of
p53-mediated death, where p53 is the tumour-suppressor
gene that is frequently mutated in cancer. Expression
of Dram is stress-induced. This region is also part of
a family of small plasma membrane proteins, referred to
as Sfk1, that may act together with or upstream of
Stt4p to generate normal levels of the essential
phospholipid PI4P, thus allowing proper localisation of
Stt4p to the actin cytoskeleton.
Length = 216
Score = 26.8 bits (60), Expect = 4.5
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 8 IGALAISFVALFIA-VVSAQRGPPQY---APGQFIPIIS 42
+ A + I V++ G +F P IS
Sbjct: 7 LIATILPLGGFIICYVIAVVLGHVDPVFTHCDEFFPYIS 45
>gnl|CDD|149722 pfam08750, CNP1, CNP1-like family. This family of proteins are
likely to be lipoproteins. CNP1 (cryptic neisserial
protein) has been expressed in E. coli and shown to be
localised periplasmicly.
Length = 139
Score = 25.7 bits (57), Expect = 8.7
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 119 TPPPIPEAILKSLQQVQVSPPGPNRFG 145
PP P+ ++L VSP RF
Sbjct: 15 PLPPAPQT--ENLLPFDVSPATSLRFF 39
>gnl|CDD|225687 COG3145, AlkB, Alkylated DNA repair protein [DNA replication,
recombination, and repair].
Length = 194
Score = 25.9 bits (57), Expect = 9.2
Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 7/55 (12%)
Query: 94 PDGTPITVQ----WFADETGFHASGAHL---PTPPPIPEAILKSLQQVQVSPPGP 141
P G P++V W D G+ S PP+ GP
Sbjct: 51 PYGKPMSVPRLLGWVTDRRGYRYSLRSPLTGKPWPPLLALFHDLFGAAGYPFEGP 105
>gnl|CDD|238385 cd00756, MoaE, MoaE family. Members of this family are involved
in biosynthesis of the molybdenum cofactor (Moco), an
essential cofactor for a diverse group of redox
enzymes. Moco biosynthesis is an evolutionarily
conserved pathway present in eubacteria, archaea and
eukaryotes. Moco contains a tricyclic pyranopterin,
termed molybdopterin (MPT), which carries the
cis-dithiolene group responsible for molybdenum
ligation. This dithiolene group is generated by MPT
synthase in the second major step in Moco biosynthesis.
MPT synthase is a heterotetramer consisting of two
large (MoaE) and two small (MoaD) subunits.
Length = 124
Score = 25.2 bits (56), Expect = 9.6
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 8 IGALAISFVALFIAVVSAQRGP 29
+G L + +AV S R
Sbjct: 72 VGRLPPGEAIVLVAVSSPHRKE 93
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.135 0.405
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,815,389
Number of extensions: 693135
Number of successful extensions: 634
Number of sequences better than 10.0: 1
Number of HSP's gapped: 633
Number of HSP's successfully gapped: 29
Length of query: 147
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 59
Effective length of database: 7,034,450
Effective search space: 415032550
Effective search space used: 415032550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.5 bits)