RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16510
         (147 letters)



>3kev_A Galieria sulfuraria DCUN1 domain-containing prote; cullin,
           neddylation, DCN-1, center for eukaryotic structural
           genomics, PSI; HET: CSO MSE; 1.30A {Galdieria
           sulphuraria}
          Length = 199

 Score = 29.2 bits (65), Expect = 0.42
 Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 11/51 (21%)

Query: 54  YRYSYETGNGIAANEQGYLKNPGQKDLEAQTAQGQFTYTAPDGTPITVQWF 104
           Y++ +            Y K P Q+ L A+TA   +         +   W 
Sbjct: 101 YQFVF-----------QYSKEPSQRSLPAETAMALWDVLLRGRFSLLDSWL 140


>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics,
           PSI-2, protein structure initiative; 2.20A {Erwinia
           carotovora}
          Length = 157

 Score = 27.8 bits (61), Expect = 0.97
 Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 1/49 (2%)

Query: 81  EAQTAQGQFTYTAPDGTPITVQWFADETGFHASG-AHLPTPPPIPEAIL 128
           +      ++ +     T  T+ W  D  G            P IP AI 
Sbjct: 57  KHDFPNNRYEFWEEGATGPTILWTPDNPGIELPTDTAHGEQPVIPSAIP 105


>3tdu_A DCN1-like protein 1; E2:E3, ligase-protein binding complex; 1.50A
           {Homo sapiens} PDB: 3tdz_A
          Length = 200

 Score = 27.3 bits (60), Expect = 1.6
 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 11/51 (21%)

Query: 54  YRYSYETGNGIAANEQGYLKNPGQKDLEAQTAQGQFTYTAPDGTPITVQWF 104
           Y++++            + KNPGQK L+ + A   +             W 
Sbjct: 99  YQFTFN-----------FAKNPGQKGLDLEMAIAYWNLVLNGRFKFLDLWN 138


>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein;
           2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B*
           2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B*
           3dxm_B* 3rse_B 2p9k_B*
          Length = 394

 Score = 27.4 bits (61), Expect = 2.0
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 90  TYTAPDGTPITV---QWFADETGFHASGAHLPTPPPIPEAILKSLQQVQV 136
           +YT PDG  I V   ++ A E  F     ++     + E +  ++Q   +
Sbjct: 243 SYTLPDGRIIKVGGERFEAPEALFQPHLINVEG-VGVAELLFNTIQAADI 291


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.8 bits (58), Expect = 2.0
 Identities = 7/21 (33%), Positives = 8/21 (38%), Gaps = 5/21 (23%)

Query: 78 KDLEAQTAQGQFTYTAPDGTP 98
          K L+A        Y A D  P
Sbjct: 23 KKLQASLK----LY-ADDSAP 38


>3ega_A Pellino-2, protein pellino homolog 2; FHA domain, E3 ubiquitin
           ligase, substrate binding phosphoprotein, protein
           binding; 1.80A {Homo sapiens} PDB: 3egb_A
          Length = 263

 Score = 26.6 bits (58), Expect = 2.8
 Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 7/80 (8%)

Query: 35  GQFIPIISYQNEPNQGDGSYRYSY------ETGNGIAANEQGYLKNPGQKDLEAQTAQGQ 88
           G+ + ++ Y      GD   R S          NG+  +    +  P      +   Q  
Sbjct: 8   GELV-VLGYNGALPNGDRGRRKSRFALYKRPKANGVKPSTVHMISTPQASKAISCKGQHS 66

Query: 89  FTYTAPDGTPITVQWFADET 108
            +YT      + V++  D+ 
Sbjct: 67  ISYTLSRNQTVVVEYTHDKD 86


>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma;
           transferase, oligomerisation DOM serine- threonine
           kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7
           PDB: 2w2c_A 1hkx_A*
          Length = 143

 Score = 25.9 bits (56), Expect = 4.4
 Identities = 13/47 (27%), Positives = 16/47 (34%), Gaps = 17/47 (36%)

Query: 89  FTYTAPDGTPITVQWFADETG-------------FHASGAHLPTPPP 122
             Y    G P T Q  ++ET              +H SGA  P  P 
Sbjct: 100 TQYIDGQGRPRTSQ--SEETRVWHRRDGKWLNVHYHCSGA--PAAPR 142


>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
           sphaericus} SCOP: c.2.1.7 c.58.1.1
          Length = 364

 Score = 26.3 bits (59), Expect = 4.6
 Identities = 7/24 (29%), Positives = 9/24 (37%), Gaps = 2/24 (8%)

Query: 91  YTAPD-GT-PITVQWFADETGFHA 112
            TA D GT    +     ET +  
Sbjct: 111 ITAEDVGTTVDDMDLIHQETDYVT 134


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.4 bits (55), Expect = 9.6
 Identities = 22/112 (19%), Positives = 28/112 (25%), Gaps = 35/112 (31%)

Query: 52  GSYRYSYE--TGNGIAANEQGYLKNPGQKDLEAQTAQ--------------GQF-TYTAP 94
           GS  +     T +   A  Q  L+    K L   T                G+F  Y + 
Sbjct: 14  GSLEHVLLVPTASFFIA-SQ--LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70

Query: 95  DGTPITVQWFAD---------ETGF------HASGAHLPTPPPIPEAILKSL 131
              P  V  F           E  +      HA  A L           K L
Sbjct: 71  LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.315    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0760    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,331,666
Number of extensions: 130569
Number of successful extensions: 268
Number of sequences better than 10.0: 1
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 20
Length of query: 147
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 62
Effective length of database: 4,328,508
Effective search space: 268367496
Effective search space used: 268367496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.1 bits)