RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16510
         (147 letters)



>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB
           {Escherichia coli [TaxId: 562]}
          Length = 200

 Score = 26.2 bits (57), Expect = 1.6
 Identities = 11/76 (14%), Positives = 21/76 (27%), Gaps = 16/76 (21%)

Query: 75  PGQKDL-----EAQTAQGQFTYTAPDGTPITVQ--------WFADETGFHASGAHLPTP- 120
              + L     +  +         P G  ++V         W     G+  S     T  
Sbjct: 14  NAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNK 73

Query: 121 --PPIPEAILKSLQQV 134
             P +P++     Q+ 
Sbjct: 74  PWPAMPQSFHNLCQRA 89


>d1r7aa1 b.71.1.1 (A:435-504) Sucrose phosphorylase {Bifidobacterium
           adolescentis [TaxId: 1680]}
          Length = 70

 Score = 23.5 bits (50), Expect = 5.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 87  GQFTYTAPDGTPITVQWFADET 108
           G F+YT  D T I+  W  + +
Sbjct: 4   GTFSYTTDDDTSISFTWRGETS 25


>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma
           cruzi [TaxId: 5693]}
          Length = 412

 Score = 24.8 bits (52), Expect = 6.1
 Identities = 4/17 (23%), Positives = 7/17 (41%)

Query: 117 LPTPPPIPEAILKSLQQ 133
           L        A +K L++
Sbjct: 42  LDKNLLTSAAQIKKLKE 58


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0528    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 559,543
Number of extensions: 24748
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 4
Length of query: 147
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,350,386
Effective search space: 94527020
Effective search space used: 94527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.1 bits)