BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16512
(815 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FJD|A Chain A, Human Parvulin-Like Peptidyl Prolyl CisTRANS ISOMERASE,
Hpar14
Length = 104
Score = 93.2 bits (230), Expect = 5e-19, Method: Composition-based stats.
Identities = 37/51 (72%), Positives = 46/51 (90%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
GDLGW+ RGSMVG FQ+AAF LP+S ++ PV+T+PP+KTKFGYHIIMVEG+
Sbjct: 53 GDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGR 103
>pdb|3UI4|A Chain A, 0.8 A Resolution Crystal Structure Of Human Parvulin 14
pdb|3UI5|A Chain A, Crystal Structure Of Human Parvulin 14
pdb|3UI6|A Chain A, 0.89 A Resolution Crystal Structure Of Human Parvulin 14
In Complex With Oxidized Dtt
Length = 101
Score = 93.2 bits (230), Expect = 5e-19, Method: Composition-based stats.
Identities = 37/51 (72%), Positives = 46/51 (90%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
GDLGW+ RGSMVG FQ+AAF LP+S ++ PV+T+PP+KTKFGYHIIMVEG+
Sbjct: 50 GDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGR 100
>pdb|1EQ3|A Chain A, Nmr Structure Of Human Parvulin Hpar14
Length = 96
Score = 93.2 bits (230), Expect = 5e-19, Method: Composition-based stats.
Identities = 37/51 (72%), Positives = 46/51 (90%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
GDLGW+ RGSMVG FQ+AAF LP+S ++ PV+T+PP+KTKFGYHIIMVEG+
Sbjct: 45 GDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGR 95
>pdb|1ELQ|A Chain A, Crystal Structure Of The Cystine C-S Lyase C-Des
pdb|1ELQ|B Chain B, Crystal Structure Of The Cystine C-S Lyase C-Des
pdb|1ELU|A Chain A, Complex Between The Cystine C-S Lyase C-Des And Its
Reaction Product Cysteine Persulfide.
pdb|1ELU|B Chain B, Complex Between The Cystine C-S Lyase C-Des And Its
Reaction Product Cysteine Persulfide
Length = 390
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/321 (20%), Positives = 124/321 (38%), Gaps = 24/321 (7%)
Query: 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTD-NHTSVLGMR 165
I Q+R + + FN D + ++ T T+ V ++++G I LTD H ++ +
Sbjct: 61 IAQLRQALAETFNVDPN--TITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIV 118
Query: 166 ELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNT 225
+ + ++ LN+ + ++ L + +G PL+
Sbjct: 119 QAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMA 178
Query: 226 VHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGAL 285
V R H + VL+D A GS LD + + D+ + + +K F P G+G L
Sbjct: 179 VCRRHQGNYPVR-------VLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGL 231
Query: 286 IVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM 345
+ +N T+ G ++ E + G ++FE T Y L
Sbjct: 232 YIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGG--KRFEVATSAYPQYAGLLAALQLH 289
Query: 346 EKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG 405
+++ + + Q + F ++ L+ +L H S Q +V+F + D
Sbjct: 290 QRQGTAEERYQAICQRSEFLWRGLN--------QLPHVHCLATSAPQAGLVSFTV---DS 338
Query: 406 TYYGYSEVQNLANLKKIQLRT 426
+ VQ L ++I LRT
Sbjct: 339 PLGHRAIVQKLEE-QRIYLRT 358
>pdb|1P3W|B Chain B, X-Ray Crystal Structure Of E. Coli Iscs
pdb|1P3W|A Chain A, X-Ray Crystal Structure Of E. Coli Iscs
Length = 404
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 25/252 (9%)
Query: 59 LKDICYLDYTGAGVYSQSQMNQTIEQLK-ENIFSHPHGNSVLSDFCVSE-IDQMRTKILQ 116
+K YLDY+ + ++ + + F +P S + E +D R +I
Sbjct: 1 MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIAD 60
Query: 117 YFNTDSDHYSVIFTSGATS----AIKTVSEYFEFNEGSFIYLTDNHTSVLGM-RELVKTN 171
D ++FTSGAT AIK + +++ I H +VL R+L +
Sbjct: 61 LVGADP--REIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREG 118
Query: 172 QIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHV 231
++ + RN + + KE + MR L +N G ++ +
Sbjct: 119 FEVTY-LAPQRNGIIDLKELEAA---MRDDTILVSIMHVNNEIGVVQDIAAIGEM----- 169
Query: 232 FKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKS 291
C +DA G +DL Q + D +S S +K++G P G+GAL V++K
Sbjct: 170 ------CRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYG-PKGIGALYVRRKP 222
Query: 292 AHVLNKTFYGGG 303
+ +GGG
Sbjct: 223 RVRIEAQMHGGG 234
>pdb|3LVJ|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVJ|B Chain B, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVK|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 2)
pdb|3LVL|B Chain B, Crystal Structure Of E.Coli Iscs-Iscu Complex
pdb|3LVM|A Chain A, Crystal Structure Of E.Coli Iscs
pdb|3LVM|B Chain B, Crystal Structure Of E.Coli Iscs
Length = 423
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 25/252 (9%)
Query: 59 LKDICYLDYTGAGVYSQSQMNQTIEQLK-ENIFSHPHGNSVLSDFCVSE-IDQMRTKILQ 116
+K YLDY+ + ++ + + F +P S + E +D R +I
Sbjct: 20 MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIAD 79
Query: 117 YFNTDSDHYSVIFTSGATS----AIKTVSEYFEFNEGSFIYLTDNHTSVLGM-RELVKTN 171
D ++FTSGAT AIK + +++ I H +VL R+L +
Sbjct: 80 LVGADP--REIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREG 137
Query: 172 QIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHV 231
++ + RN + + KE + MR L +N G ++ +
Sbjct: 138 FEVTY-LAPQRNGIIDLKELEAA---MRDDTILVSIMHVNNEIGVVQDIAAIGEM----- 188
Query: 232 FKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKS 291
C +DA G +DL Q + D +S S +K++G P G+GAL V++K
Sbjct: 189 ------CRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYG-PKGIGALYVRRKP 241
Query: 292 AHVLNKTFYGGG 303
+ +GGG
Sbjct: 242 RVRIEAQMHGGG 253
>pdb|1N2T|A Chain A, C-Des Mutant K223a With Gly Covalenty Linked To The
Plp-Cofactor
pdb|1N2T|B Chain B, C-Des Mutant K223a With Gly Covalenty Linked To The
Plp-Cofactor
pdb|1N31|A Chain A, Structure Of A Catalytically Inactive Mutant (K223a) Of
C-Des With A Substrate (Cystine) Linked To The Co-Factor
pdb|1N31|B Chain B, Structure Of A Catalytically Inactive Mutant (K223a) Of
C-Des With A Substrate (Cystine) Linked To The Co-Factor
Length = 386
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 123/321 (38%), Gaps = 24/321 (7%)
Query: 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTD-NHTSVLGMR 165
I Q+R + + FN D + ++ T T+ V ++++G I LTD H ++ +
Sbjct: 57 IAQLRQALAETFNVDPN--TITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIV 114
Query: 166 ELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNT 225
+ + ++ LN+ + ++ L + +G PL+
Sbjct: 115 QAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMA 174
Query: 226 VHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGAL 285
V R H + VL+D A GS LD + + D+ + + + F P G+G L
Sbjct: 175 VCRRHQGNYPVR-------VLVDGAQSAGSLPLDFSRLEVDYYAFTGHAWFAGPAGVGGL 227
Query: 286 IVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM 345
+ +N T+ G ++ E + G ++FE T Y L
Sbjct: 228 YIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGG--KRFEVATSAYPQYAGLLAALQLH 285
Query: 346 EKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG 405
+++ + + Q + F ++ L+ +L H S Q +V+F + D
Sbjct: 286 QRQGTAEERYQAICQRSEFLWRGLN--------QLPHVHCLATSAPQAGLVSFTV---DS 334
Query: 406 TYYGYSEVQNLANLKKIQLRT 426
+ VQ L ++I LRT
Sbjct: 335 PLGHRAIVQKLEE-QRIYLRT 354
>pdb|2RQS|A Chain A, 3d Structure Of Pin From The Psychrophilic Archeon
Cenarcheaum Symbiosum (Cspin)
Length = 97
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 6/46 (13%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHII 51
G LG+ RG MV F+DAAF+L + V+ PV K++FGYH+I
Sbjct: 54 GSLGYFGRGKMVKPFEDAAFRLQVGEVSEPV------KSEFGYHVI 93
>pdb|3RFW|A Chain A, The Virulence Factor Peb4 And The Periplasmic Protein
Cj1289 Are Two Structurally-Related Sura-Like Chaperones
In The Human Pathogen Campylobacter Jejuni
Length = 252
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE 54
G+LGW + +MV F DAAF L T+ T P+KT FGYH+I+ E
Sbjct: 163 GELGWFDQSTMVKPFTDAAFALKNGTI-----TTTPVKTNFGYHVILKE 206
>pdb|1ZK6|A Chain A, Nmr Solution Structure Of B. Subtilis Prsa Ppiase
Length = 93
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 7/47 (14%)
Query: 6 GDLGWVVR-GSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHII 51
GDLGW + G M F AAFKL V++PV KT++GYHII
Sbjct: 48 GDLGWFAKEGQMDETFSKAAFKLKTGEVSDPV------KTQYGYHII 88
>pdb|1JNS|A Chain A, Nmr Structure Of The E. Coli Peptidyl-Prolyl CisTRANS-
Isomerase Parvulin 10
pdb|1JNT|A Chain A, Nmr Structure Of The E. Coli Peptidyl-Prolyl CisTRANS-
Isomerase Parvulin 10
Length = 92
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 10/54 (18%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEP--PIKTKFGYHIIMVEGKN 57
GDLG +G MV F F P+ EP P+ T+FGYHII V +N
Sbjct: 47 GDLGEFRQGQMVPAFDKVVFSCPV--------LEPTGPLHTQFGYHIIKVLYRN 92
>pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAF|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|2XP6|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
Length = 167
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIM 52
GDLG RG M F+DA+F L ++ PV+T+ G HII+
Sbjct: 124 GDLGAFSRGQMAKPFEDASFALRTGEMSGPVFTDS------GIHIIL 164
>pdb|1NMW|A Chain A, Solution Structure Of The Ppiase Domain Of Human Pin1
Length = 114
Score = 37.4 bits (85), Expect = 0.038, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIM 52
GDLG RG M F+DA+F L ++ PV+T+ G HII+
Sbjct: 71 GDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDS------GIHIIL 111
>pdb|2ZQV|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 37.0 bits (84), Expect = 0.040, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIM 52
GDLG RG M F+DA+F L ++ PV+T+ G HII+
Sbjct: 120 GDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDS------GIHIIL 160
>pdb|2ZR4|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 37.0 bits (84), Expect = 0.042, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIM 52
GDLG RG M F+DA+F L ++ PV+T+ G HII+
Sbjct: 120 GDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDS------GIHIIL 160
>pdb|2ZQS|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 37.0 bits (84), Expect = 0.042, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIM 52
GDLG RG M F+DA+F L ++ PV+T+ G HII+
Sbjct: 120 GDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDS------GIHIIL 160
>pdb|2ZR5|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 37.0 bits (84), Expect = 0.043, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIM 52
GDLG RG M F+DA+F L ++ PV+T+ G HII+
Sbjct: 120 GDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDS------GIHIIL 160
>pdb|2F21|A Chain A, Human Pin1 Fip Mutant
Length = 162
Score = 37.0 bits (84), Expect = 0.043, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIM 52
GDLG RG M F+DA+F L ++ PV+T+ G HII+
Sbjct: 119 GDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDS------GIHIIL 159
>pdb|3IK8|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IK8|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IKD|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IKD|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IKG|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3IKG|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (I)
pdb|3JYJ|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
pdb|3JYJ|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
pdb|3I6C|A Chain A, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
pdb|3I6C|B Chain B, Structure-Based Design Of Novel Pin1 Inhibitors (Ii)
Length = 123
Score = 37.0 bits (84), Expect = 0.044, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIM 52
GDLG RG M F+DA+F L ++ PV+T+ G HII+
Sbjct: 80 GDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDS------GIHIIL 120
>pdb|3KAC|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAC|B Chain B, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
Length = 123
Score = 37.0 bits (84), Expect = 0.044, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIM 52
GDLG RG M F+DA+F L ++ PV+T+ G HII+
Sbjct: 80 GDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDS------GIHIIL 120
>pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo Sapiens
pdb|1NMV|A Chain A, Solution Structure Of Human Pin1
Length = 163
Score = 37.0 bits (84), Expect = 0.044, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIM 52
GDLG RG M F+DA+F L ++ PV+T+ G HII+
Sbjct: 120 GDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDS------GIHIIL 160
>pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
pdb|3OOB|A Chain A, Structural And Functional Insights Of Directly Targeting
Pin1 By Epigallocatechin-3-Gallate
Length = 163
Score = 37.0 bits (84), Expect = 0.044, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIM 52
GDLG RG M F+DA+F L ++ PV+T+ G HII+
Sbjct: 120 GDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDS------GIHIIL 160
>pdb|2ZQU|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 37.0 bits (84), Expect = 0.044, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIM 52
GDLG RG M F+DA+F L ++ PV+T+ G HII+
Sbjct: 120 GDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDS------GIHIIL 160
>pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide
pdb|2Q5A|A Chain A, Human Pin1 Bound To L-Peptide
pdb|3KAB|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAG|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAH|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAI|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KCE|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3ODK|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP3|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP4|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP5|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP7|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP8|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP9|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPA|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPB|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|3NTP|A Chain A, Human Pin1 Complexed With Reduced Amide Inhibitor
Length = 167
Score = 37.0 bits (84), Expect = 0.044, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIM 52
GDLG RG M F+DA+F L ++ PV+T+ G HII+
Sbjct: 124 GDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDS------GIHIIL 164
>pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline Recognition
By Group Iv Ww Domains
Length = 167
Score = 37.0 bits (84), Expect = 0.044, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIM 52
GDLG RG M F+DA+F L ++ PV+T+ G HII+
Sbjct: 124 GDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDS------GIHIIL 164
>pdb|3TCZ|A Chain A, Human Pin1 Bound To Cis Peptidomimetic Inhibitor
pdb|3TDB|A Chain A, Human Pin1 Bound To Trans Peptidomimetic Inhibitor
Length = 158
Score = 37.0 bits (84), Expect = 0.046, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIM 52
GDLG RG M F+DA+F L ++ PV+T+ G HII+
Sbjct: 115 GDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDS------GIHIIL 155
>pdb|3TC5|A Chain A, Selective Targeting Of Disease-Relevant Protein Binding
Domains By O- Phosphorylated Natural Product Derivatives
Length = 166
Score = 37.0 bits (84), Expect = 0.046, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIM 52
GDLG RG M F+DA+F L ++ PV+T+ G HII+
Sbjct: 123 GDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDS------GIHIIL 163
>pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant
Length = 161
Score = 37.0 bits (84), Expect = 0.048, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIM 52
GDLG RG M F+DA+F L ++ PV+T+ G HII+
Sbjct: 118 GDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDS------GIHIIL 158
>pdb|2JZV|A Chain A, Solution Structure Of S. Aureus Prsa-Ppiase
Length = 111
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHII 51
G+LG+V++G +F+ A FKL V+ V K+ FGYHII
Sbjct: 68 GELGYVLKGQTDKDFEKALFKLKDGEVSEVV------KSSFGYHII 107
>pdb|2ZQT|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 34.3 bits (77), Expect = 0.27, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIM 52
GDLG RG F+DA+F L ++ PV+T+ G HII+
Sbjct: 120 GDLGAFSRGQAQKPFEDASFALRTGEMSGPVFTDS------GIHIIL 160
>pdb|1YW5|A Chain A, Peptidyl-Prolyl Isomerase Ess1 From Candida Albicans
Length = 177
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 55
GDLG+ +G M F++AAF L + V+N I+T G HI+ G
Sbjct: 134 GDLGFFSKGQMQPPFEEAAFNLHVGEVSN------IIETNSGVHILQRTG 177
>pdb|2LJ4|A Chain A, Solution Structure Of The Tbpin1
Length = 115
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHII 51
GDLG+ G M+ F+DA L I ++ P ++T G HII
Sbjct: 72 GDLGFFSSGEMMKPFEDAVRALKIGDIS------PIVQTDSGLHII 111
>pdb|4G2P|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
Domain Ii Of Molecular Chaperone Sura From Salmonella
Enterica Subsp. Enterica Serovar Typhimurium Str. 14028s
pdb|4G2P|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
Domain Ii Of Molecular Chaperone Sura From Salmonella
Enterica Subsp. Enterica Serovar Typhimurium Str. 14028s
Length = 110
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHII 51
GDLGW F+DA KL ++ PV++ FG+H+I
Sbjct: 63 GDLGWATPDIFDPAFRDALTKLHKGQISAPVHSS------FGWHLI 102
>pdb|2L5Y|A Chain A, Nmr Structure Of Calcium-Loaded Stim2 Ef-Sam
Length = 150
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 33/56 (58%)
Query: 147 NEGSFIYLTDNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSN 202
N+ S ++ D H ++ + + KT+++++++++D L EF E + +N R +N
Sbjct: 52 NKHSHLHREDKHITIEDLWKRWKTSEVHNWTLEDTLQWLIEFVELPQYEKNFRDNN 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,941,338
Number of Sequences: 62578
Number of extensions: 1004155
Number of successful extensions: 2309
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2274
Number of HSP's gapped (non-prelim): 37
length of query: 815
length of database: 14,973,337
effective HSP length: 107
effective length of query: 708
effective length of database: 8,277,491
effective search space: 5860463628
effective search space used: 5860463628
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)