Query psy16512
Match_columns 815
No_of_seqs 454 out of 3775
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 23:13:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16512.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16512hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hvk_A Probable cysteine desul 100.0 8.5E-34 2.9E-38 314.0 31.9 358 62-497 1-372 (382)
2 4eb5_A Probable cysteine desul 100.0 2.6E-32 9.1E-37 302.4 30.0 358 62-497 1-372 (382)
3 3e77_A Phosphoserine aminotran 100.0 1.4E-32 4.9E-37 300.9 25.1 346 64-497 15-374 (377)
4 3qm2_A Phosphoserine aminotran 100.0 8.5E-33 2.9E-37 304.6 21.8 344 61-497 26-384 (386)
5 1kmj_A Selenocysteine lyase; p 100.0 2E-31 6.9E-36 297.7 32.8 364 61-496 23-403 (406)
6 3lvm_A Cysteine desulfurase; s 100.0 1.7E-31 6E-36 300.4 31.2 369 55-499 16-400 (423)
7 1eg5_A Aminotransferase; PLP-d 100.0 6.3E-31 2.2E-35 291.4 31.8 357 63-497 3-375 (384)
8 3cai_A Possible aminotransfera 100.0 2.5E-31 8.7E-36 297.4 28.2 360 54-493 18-404 (406)
9 3vax_A Putative uncharacterize 100.0 1.9E-31 6.4E-36 297.7 24.9 361 58-496 17-398 (400)
10 3e9k_A Kynureninase; kynurenin 100.0 2.8E-31 9.6E-36 302.8 26.6 367 61-497 67-460 (465)
11 1t3i_A Probable cysteine desul 100.0 2.5E-30 8.6E-35 290.3 32.2 369 62-497 29-412 (420)
12 1elu_A L-cysteine/L-cystine C- 100.0 8.7E-30 3E-34 283.0 33.9 364 55-493 10-387 (390)
13 3a9z_A Selenocysteine lyase; P 100.0 7.8E-30 2.7E-34 287.9 30.1 375 48-496 5-426 (432)
14 3m5u_A Phosphoserine aminotran 100.0 2.1E-30 7.2E-35 282.9 23.6 340 62-497 5-359 (361)
15 3ffr_A Phosphoserine aminotran 100.0 7.5E-30 2.6E-34 280.4 27.9 350 63-495 5-361 (362)
16 2z9v_A Aspartate aminotransfer 100.0 4.4E-30 1.5E-34 285.8 23.4 359 55-497 2-370 (392)
17 1iug_A Putative aspartate amin 100.0 1.5E-29 5.1E-34 277.0 23.5 338 64-498 3-348 (352)
18 2huf_A Alanine glyoxylate amin 100.0 2.5E-29 8.6E-34 279.8 23.5 362 46-497 3-382 (393)
19 2dr1_A PH1308 protein, 386AA l 100.0 5.8E-29 2E-33 275.9 23.9 356 55-497 13-378 (386)
20 3zrp_A Serine-pyruvate aminotr 100.0 8.3E-29 2.8E-33 274.4 22.4 344 66-498 6-363 (384)
21 1qz9_A Kynureninase; kynurenin 100.0 2E-27 6.9E-32 266.6 31.3 360 55-499 22-403 (416)
22 2yrr_A Aminotransferase, class 100.0 2E-28 7E-33 267.8 20.9 340 66-496 4-351 (353)
23 2exn_A Hypothetical protein BO 100.0 2E-29 6.9E-34 233.5 10.2 120 535-665 1-123 (136)
24 1vjo_A Alanine--glyoxylate ami 100.0 6.9E-28 2.4E-32 268.2 23.8 341 62-495 34-392 (393)
25 3isl_A Purine catabolism prote 100.0 1E-27 3.5E-32 268.8 23.6 322 107-498 46-390 (416)
26 3nnk_A Ureidoglycine-glyoxylat 100.0 1.2E-27 3.9E-32 267.9 22.6 356 63-498 14-390 (411)
27 2ch1_A 3-hydroxykynurenine tra 100.0 1.4E-27 4.7E-32 266.0 23.0 347 62-498 18-383 (396)
28 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 5E-28 1.7E-32 267.0 19.0 346 61-496 8-368 (371)
29 3kgw_A Alanine-glyoxylate amin 100.0 3.2E-27 1.1E-31 262.4 24.5 352 64-497 25-387 (393)
30 3f0h_A Aminotransferase; RER07 100.0 2.5E-27 8.7E-32 261.9 22.8 343 66-498 23-374 (376)
31 2c0r_A PSAT, phosphoserine ami 100.0 5.2E-27 1.8E-31 258.2 24.2 336 62-496 4-359 (362)
32 1m32_A 2-aminoethylphosphonate 99.9 8.2E-27 2.8E-31 256.4 24.7 314 107-496 39-363 (366)
33 3f9t_A TDC, L-tyrosine decarbo 99.9 4.7E-26 1.6E-30 253.1 28.5 329 63-496 33-396 (397)
34 2bkw_A Alanine-glyoxylate amin 99.9 1.3E-26 4.6E-31 256.8 20.6 312 107-496 40-382 (385)
35 3euc_A Histidinol-phosphate am 99.9 2.8E-25 9.5E-30 244.8 28.7 322 62-496 32-366 (367)
36 3ke3_A Putative serine-pyruvat 99.9 1.1E-26 3.7E-31 257.5 16.7 316 106-497 36-375 (379)
37 3ly1_A Putative histidinol-pho 99.9 3.3E-25 1.1E-29 242.9 26.9 321 62-497 18-351 (354)
38 1w23_A Phosphoserine aminotran 99.9 8.8E-26 3E-30 248.0 22.2 335 63-496 4-358 (360)
39 3ffh_A Histidinol-phosphate am 99.9 4.4E-25 1.5E-29 242.9 27.5 320 61-495 33-363 (363)
40 3hbx_A GAD 1, glutamate decarb 99.9 1E-24 3.5E-29 250.2 30.1 340 71-496 66-442 (502)
41 3get_A Histidinol-phosphate am 99.9 4.7E-25 1.6E-29 242.8 26.1 318 61-495 31-364 (365)
42 2dgk_A GAD-beta, GADB, glutama 99.9 1.2E-24 4.2E-29 246.8 29.2 344 72-497 53-433 (452)
43 3p1t_A Putative histidinol-pho 99.9 5E-25 1.7E-29 239.6 24.8 309 61-496 17-335 (337)
44 3dzz_A Putative pyridoxal 5'-p 99.9 6.4E-25 2.2E-29 243.9 22.4 324 72-497 40-388 (391)
45 3a2b_A Serine palmitoyltransfe 99.9 1.3E-24 4.4E-29 242.4 24.2 350 41-497 29-391 (398)
46 1v2d_A Glutamine aminotransfer 99.9 1.1E-24 3.8E-29 241.4 23.2 315 73-498 39-371 (381)
47 2w8t_A SPT, serine palmitoyltr 99.9 4.1E-24 1.4E-28 240.7 28.2 323 73-497 79-414 (427)
48 2z67_A O-phosphoseryl-tRNA(SEC 99.9 6.2E-26 2.1E-30 257.6 13.3 354 54-495 73-455 (456)
49 3tqx_A 2-amino-3-ketobutyrate 99.9 2.3E-24 7.8E-29 240.1 25.6 349 41-497 29-395 (399)
50 3hdo_A Histidinol-phosphate am 99.9 2E-24 6.9E-29 237.4 24.0 317 61-497 27-354 (360)
51 2jis_A Cysteine sulfinic acid 99.9 3.6E-24 1.2E-28 246.9 27.1 359 61-496 108-513 (515)
52 2fyf_A PSAT, phosphoserine ami 99.9 2.9E-24 9.8E-29 239.6 25.1 336 62-496 40-396 (398)
53 3kax_A Aminotransferase, class 99.9 9.1E-25 3.1E-29 241.9 20.5 323 73-495 38-382 (383)
54 1fc4_A 2-amino-3-ketobutyrate 99.9 3.5E-24 1.2E-28 239.0 25.4 347 41-497 30-396 (401)
55 1lc5_A COBD, L-threonine-O-3-p 99.9 1.1E-23 3.8E-28 231.9 27.9 308 73-496 38-358 (364)
56 1fg7_A Histidinol phosphate am 99.9 5.4E-24 1.8E-28 233.7 24.8 283 107-494 60-354 (356)
57 4dq6_A Putative pyridoxal phos 99.9 2.4E-24 8.3E-29 239.2 22.0 329 63-495 35-390 (391)
58 2qma_A Diaminobutyrate-pyruvat 99.9 7.6E-24 2.6E-28 243.3 25.7 358 60-496 99-494 (497)
59 1pff_A Methionine gamma-lyase; 99.9 8.3E-25 2.9E-29 237.5 16.7 304 109-494 2-330 (331)
60 1gd9_A Aspartate aminotransfer 99.9 3.8E-24 1.3E-28 237.7 22.3 331 62-497 28-385 (389)
61 1bs0_A Protein (8-amino-7-oxon 99.9 7.1E-24 2.4E-28 235.1 24.2 340 43-494 27-383 (384)
62 2z61_A Probable aspartate amin 99.9 2E-24 6.7E-29 238.4 19.5 317 62-496 31-369 (370)
63 3g0t_A Putative aminotransfera 99.9 1E-23 3.5E-28 238.1 25.5 347 62-497 46-436 (437)
64 3mc6_A Sphingosine-1-phosphate 99.9 5.9E-24 2E-28 244.3 23.8 297 107-497 109-436 (497)
65 3fdb_A Beta C-S lyase, putativ 99.9 5.1E-24 1.8E-28 235.4 22.4 318 72-497 36-375 (377)
66 3ftb_A Histidinol-phosphate am 99.9 1.4E-23 4.7E-28 230.6 25.6 320 61-495 27-358 (361)
67 1rv3_A Serine hydroxymethyltra 99.9 7.6E-25 2.6E-29 250.2 15.7 349 68-497 51-430 (483)
68 2fq6_A Cystathionine beta-lyas 99.9 1.1E-23 3.6E-28 235.4 24.6 306 107-493 84-413 (415)
69 1qgn_A Protein (cystathionine 99.9 1.2E-23 4.2E-28 236.3 24.0 309 105-496 114-443 (445)
70 1b5p_A Protein (aspartate amin 99.9 1.2E-23 4.2E-28 233.4 23.4 314 73-495 45-382 (385)
71 1u08_A Hypothetical aminotrans 99.9 5.6E-24 1.9E-28 236.1 20.6 328 62-493 32-385 (386)
72 3dyd_A Tyrosine aminotransfera 99.9 3.4E-23 1.2E-27 233.2 27.2 331 62-497 56-423 (427)
73 3mad_A Sphingosine-1-phosphate 99.9 2.3E-23 7.7E-28 240.4 26.2 296 107-497 141-468 (514)
74 1wyu_A Glycine dehydrogenase ( 99.9 1.2E-23 4.2E-28 237.6 23.2 305 107-495 110-437 (438)
75 3h14_A Aminotransferase, class 99.9 1.7E-23 5.7E-28 232.8 23.6 328 63-498 34-382 (391)
76 3cq5_A Histidinol-phosphate am 99.9 1.2E-22 4.2E-27 224.0 29.9 314 63-496 33-366 (369)
77 1o4s_A Aspartate aminotransfer 99.9 6.6E-24 2.2E-28 236.0 19.8 321 62-496 43-387 (389)
78 3l8a_A METC, putative aminotra 99.9 1.8E-23 6.2E-28 235.0 23.5 321 72-496 74-420 (421)
79 2o0r_A RV0858C (N-succinyldiam 99.9 5.8E-24 2E-28 238.2 19.4 342 62-498 27-396 (411)
80 1gc0_A Methionine gamma-lyase; 99.9 1.8E-23 6.2E-28 233.1 23.2 312 105-494 65-397 (398)
81 2fnu_A Aminotransferase; prote 99.9 2.9E-23 1E-27 229.1 24.0 341 70-496 8-370 (375)
82 3qgu_A LL-diaminopimelate amin 99.9 3.7E-23 1.3E-27 234.4 25.1 343 62-501 71-443 (449)
83 1xi9_A Putative transaminase; 99.9 7.8E-24 2.7E-28 236.7 18.8 330 62-497 40-402 (406)
84 3cog_A Cystathionine gamma-lya 99.9 9.7E-24 3.3E-28 235.5 19.1 307 107-496 69-400 (403)
85 3fkd_A L-threonine-O-3-phospha 99.9 5E-23 1.7E-27 225.3 24.5 303 73-498 29-342 (350)
86 2okj_A Glutamate decarboxylase 99.9 6.4E-23 2.2E-27 235.9 26.5 363 62-496 93-500 (504)
87 1c7n_A Cystalysin; transferase 99.9 4.4E-23 1.5E-27 229.9 24.2 326 63-497 34-392 (399)
88 1j32_A Aspartate aminotransfer 99.9 1.1E-23 3.6E-28 234.0 19.1 316 73-496 44-385 (388)
89 2gb3_A Aspartate aminotransfer 99.9 2.7E-23 9.1E-28 232.7 22.1 328 62-497 45-401 (409)
90 3nra_A Aspartate aminotransfer 99.9 7.3E-24 2.5E-28 236.8 17.1 324 72-497 53-404 (407)
91 2rfv_A Methionine gamma-lyase; 99.9 1E-23 3.4E-28 235.2 18.2 313 107-494 66-396 (398)
92 2cb1_A O-acetyl homoserine sul 99.9 5.2E-23 1.8E-27 230.5 23.7 322 107-493 58-411 (412)
93 1bw0_A TAT, protein (tyrosine 99.9 7.3E-23 2.5E-27 229.5 24.7 326 71-497 49-412 (416)
94 2x5d_A Probable aminotransfera 99.9 2.5E-23 8.7E-28 233.1 20.8 295 107-497 77-397 (412)
95 1vp4_A Aminotransferase, putat 99.9 2.1E-23 7.2E-28 234.7 20.1 304 107-497 87-417 (425)
96 1d2f_A MALY protein; aminotran 99.9 9E-23 3.1E-27 226.7 24.8 319 73-497 42-388 (390)
97 2o1b_A Aminotransferase, class 99.9 9.1E-23 3.1E-27 228.0 24.8 292 107-497 87-402 (404)
98 3ele_A Amino transferase; RER0 99.9 2.2E-23 7.4E-28 232.4 19.6 318 73-497 49-395 (398)
99 3op7_A Aminotransferase class 99.9 1.5E-22 5.2E-27 223.6 25.9 291 107-497 65-370 (375)
100 1yiz_A Kynurenine aminotransfe 99.9 6.2E-23 2.1E-27 231.1 23.1 336 62-496 39-427 (429)
101 2zyj_A Alpha-aminodipate amino 99.9 1.4E-23 4.9E-28 233.8 17.4 297 107-497 76-392 (397)
102 3fvs_A Kynurenine--oxoglutarat 99.9 2.3E-23 8E-28 234.0 19.1 325 73-496 42-420 (422)
103 3asa_A LL-diaminopimelate amin 99.9 1.6E-22 5.5E-27 225.6 24.9 340 62-499 35-394 (400)
104 3ei9_A LL-diaminopimelate amin 99.9 1E-22 3.5E-27 229.6 23.6 328 63-495 59-425 (432)
105 1svv_A Threonine aldolase; str 99.9 3.9E-23 1.3E-27 226.4 19.4 324 62-496 15-356 (359)
106 3e2y_A Kynurenine-oxoglutarate 99.9 3.7E-23 1.3E-27 231.4 19.2 334 61-493 24-408 (410)
107 1n8p_A Cystathionine gamma-lya 99.9 3.1E-23 1.1E-27 230.6 18.1 307 107-494 57-391 (393)
108 2bwn_A 5-aminolevulinate synth 99.9 1E-22 3.6E-27 227.1 21.9 330 64-496 51-398 (401)
109 3vp6_A Glutamate decarboxylase 99.9 5.4E-22 1.8E-26 228.0 28.4 323 107-495 137-502 (511)
110 3aow_A Putative uncharacterize 99.9 1.4E-22 4.7E-27 229.5 23.0 301 107-497 120-444 (448)
111 3ezs_A Aminotransferase ASPB; 99.9 1.6E-22 5.4E-27 223.4 22.9 288 107-496 61-373 (376)
112 2zc0_A Alanine glyoxylate tran 99.9 9.9E-23 3.4E-27 227.7 21.1 301 107-497 77-403 (407)
113 1cs1_A CGS, protein (cystathio 99.9 5.9E-22 2E-26 220.0 26.1 305 107-495 54-384 (386)
114 3k40_A Aromatic-L-amino-acid d 99.9 2.4E-22 8.2E-27 228.9 23.1 315 107-496 115-469 (475)
115 2dou_A Probable N-succinyldiam 99.9 1.6E-22 5.6E-27 223.5 21.0 314 73-495 39-375 (376)
116 2x3l_A ORN/Lys/Arg decarboxyla 99.9 3.3E-23 1.1E-27 234.2 15.7 277 107-496 59-351 (446)
117 3frk_A QDTB; aminotransferase, 99.9 1.4E-22 4.8E-27 223.8 20.2 338 73-495 15-365 (373)
118 3kki_A CAI-1 autoinducer synth 99.9 2.5E-22 8.6E-27 224.7 22.4 318 73-497 74-403 (409)
119 3jtx_A Aminotransferase; NP_28 99.9 1.7E-22 5.8E-27 224.8 20.8 318 73-495 44-395 (396)
120 1v72_A Aldolase; PLP-dependent 99.9 1.6E-22 5.5E-27 221.4 20.2 324 62-496 9-351 (356)
121 3b46_A Aminotransferase BNA3; 99.9 1.5E-22 5.3E-27 229.2 19.6 322 73-493 71-442 (447)
122 1jg8_A L-ALLO-threonine aldola 99.9 6.2E-23 2.1E-27 224.1 15.3 324 62-496 5-344 (347)
123 3ppl_A Aspartate aminotransfer 99.9 3.2E-22 1.1E-26 225.2 21.5 303 107-497 80-419 (427)
124 3ez1_A Aminotransferase MOCR f 99.9 1.1E-21 3.7E-26 220.5 25.8 301 107-497 72-414 (423)
125 1js3_A DDC;, DOPA decarboxylas 99.9 5.7E-22 2E-26 227.0 23.8 319 107-497 115-473 (486)
126 3qhx_A Cystathionine gamma-syn 99.9 3.9E-22 1.3E-26 221.7 21.7 303 107-491 68-391 (392)
127 1uu1_A Histidinol-phosphate am 99.9 2.6E-22 8.8E-27 218.3 19.6 303 61-494 20-334 (335)
128 2vi8_A Serine hydroxymethyltra 99.9 1.2E-22 4.2E-27 226.6 17.3 340 63-498 25-387 (405)
129 1iay_A ACC synthase 2, 1-amino 99.9 1.4E-22 4.7E-27 228.2 16.8 299 107-497 85-426 (428)
130 2eh6_A Acoat, acetylornithine 99.9 9.9E-22 3.4E-26 217.0 23.2 317 61-494 27-374 (375)
131 3tcm_A Alanine aminotransferas 99.9 8.6E-22 2.9E-26 226.0 23.4 336 72-496 106-492 (500)
132 3piu_A 1-aminocyclopropane-1-c 99.9 1.9E-22 6.6E-27 227.6 17.6 304 107-497 88-431 (435)
133 3uwc_A Nucleotide-sugar aminot 99.9 6.8E-22 2.3E-26 218.2 21.3 318 107-498 40-371 (374)
134 3acz_A Methionine gamma-lyase; 99.9 2.5E-21 8.5E-26 215.1 25.6 301 107-492 61-387 (389)
135 2r2n_A Kynurenine/alpha-aminoa 99.9 2.6E-21 9E-26 217.6 25.9 305 108-497 85-423 (425)
136 3ndn_A O-succinylhomoserine su 99.9 1.4E-21 4.7E-26 218.4 22.9 310 106-491 82-413 (414)
137 1e5e_A MGL, methionine gamma-l 99.9 1.6E-20 5.5E-25 209.5 31.0 305 107-496 64-393 (404)
138 4e1o_A HDC, histidine decarbox 99.9 8.3E-22 2.8E-26 225.0 20.9 316 107-496 120-476 (481)
139 3d6k_A Putative aminotransfera 99.9 4.2E-21 1.4E-25 215.7 26.2 301 107-496 78-416 (422)
140 1c4k_A Protein (ornithine deca 99.9 2.3E-21 7.8E-26 229.1 24.0 317 106-497 174-565 (730)
141 3if2_A Aminotransferase; YP_26 99.9 1E-21 3.4E-26 222.3 19.7 304 107-496 85-438 (444)
142 3ruy_A Ornithine aminotransfer 99.9 9.3E-21 3.2E-25 210.6 26.9 322 61-495 35-391 (392)
143 1ibj_A CBL, cystathionine beta 99.9 4.6E-22 1.6E-26 225.2 16.6 308 107-497 135-461 (464)
144 1wyu_B Glycine dehydrogenase s 99.9 3.5E-21 1.2E-25 219.6 23.9 349 62-497 68-440 (474)
145 2ctz_A O-acetyl-L-homoserine s 99.9 6.1E-21 2.1E-25 214.2 25.3 326 106-494 59-419 (421)
146 1b9h_A AHBA synthase, protein 99.9 1.9E-21 6.5E-26 215.8 20.8 352 73-496 15-386 (388)
147 3g7q_A Valine-pyruvate aminotr 99.9 4.1E-21 1.4E-25 215.2 23.7 299 107-497 77-412 (417)
148 1vef_A Acetylornithine/acetyl- 99.9 5.7E-21 2E-25 212.5 24.5 323 62-495 45-394 (395)
149 2x5f_A Aspartate_tyrosine_phen 99.9 9.4E-22 3.2E-26 221.6 17.8 295 107-496 90-427 (430)
150 3b8x_A WBDK, pyridoxamine 5-ph 99.9 1.7E-20 5.8E-25 208.4 27.7 349 70-491 10-389 (390)
151 1mdo_A ARNB aminotransferase; 99.9 3.3E-21 1.1E-25 214.2 21.8 354 73-499 18-387 (393)
152 2dkj_A Serine hydroxymethyltra 99.9 1E-21 3.5E-26 219.3 17.1 336 70-497 32-387 (407)
153 2a7v_A Serine hydroxymethyltra 99.9 4E-21 1.4E-25 217.5 21.6 354 68-498 61-441 (490)
154 3dr4_A Putative perosamine syn 99.9 1.4E-20 4.8E-25 209.1 25.2 345 71-495 32-390 (391)
155 3nyt_A Aminotransferase WBPE; 99.9 2.1E-21 7.2E-26 213.9 18.4 339 72-494 13-360 (367)
156 2oga_A Transaminase; PLP-depen 99.9 2.2E-21 7.4E-26 216.4 18.2 341 73-496 42-394 (399)
157 1o69_A Aminotransferase; struc 99.9 1.3E-20 4.5E-25 209.6 22.8 350 73-499 10-388 (394)
158 3ri6_A O-acetylhomoserine sulf 99.9 1.3E-20 4.4E-25 211.1 22.4 325 107-490 84-428 (430)
159 2c81_A Glutamine-2-deoxy-scyll 99.9 3.4E-20 1.2E-24 208.0 25.5 364 72-496 13-412 (418)
160 3rq1_A Aminotransferase class 99.9 6.5E-21 2.2E-25 213.8 19.5 296 107-497 82-414 (418)
161 3n0l_A Serine hydroxymethyltra 99.9 4.7E-21 1.6E-25 214.7 18.3 336 70-499 34-390 (417)
162 3gbx_A Serine hydroxymethyltra 99.9 5.4E-21 1.8E-25 214.3 18.1 336 70-499 39-397 (420)
163 2vyc_A Biodegradative arginine 99.9 2.3E-20 7.8E-25 222.6 23.5 309 107-497 207-604 (755)
164 3ihj_A Alanine aminotransferas 99.8 3E-20 1E-24 212.9 22.7 336 72-497 101-492 (498)
165 1s0a_A Adenosylmethionine-8-am 99.8 1.1E-19 3.9E-24 204.5 26.9 336 61-496 42-422 (429)
166 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.8 5.8E-20 2E-24 207.4 23.7 353 72-496 40-434 (437)
167 3f6t_A Aspartate aminotransfer 99.8 1E-20 3.6E-25 218.4 17.5 355 63-497 106-524 (533)
168 3bwn_A AT1G70560, L-tryptophan 99.8 1.5E-20 5E-25 209.1 16.9 280 108-496 71-385 (391)
169 3t18_A Aminotransferase class 99.8 3.8E-20 1.3E-24 207.2 19.9 294 107-494 81-410 (413)
170 2po3_A 4-dehydrase; external a 99.8 1.6E-19 5.6E-24 202.9 24.0 341 74-498 31-386 (424)
171 7aat_A Aspartate aminotransfer 99.8 2.6E-20 8.9E-25 207.7 16.9 328 63-495 37-400 (401)
172 2ord_A Acoat, acetylornithine 99.8 1.7E-19 5.8E-24 200.8 23.1 322 61-496 39-395 (397)
173 3fsl_A Aromatic-amino-acid ami 99.8 2.7E-20 9.2E-25 207.1 15.5 324 63-494 35-396 (397)
174 3nmy_A Xometc, cystathionine g 99.8 1.3E-19 4.3E-24 201.6 20.7 307 107-492 69-397 (400)
175 2ay1_A Aroat, aromatic amino a 99.8 8.1E-21 2.8E-25 211.2 11.1 317 70-494 42-392 (394)
176 1sff_A 4-aminobutyrate aminotr 99.8 7.1E-19 2.4E-23 197.6 26.7 326 72-496 57-422 (426)
177 3ecd_A Serine hydroxymethyltra 99.8 9.1E-20 3.1E-24 204.6 18.0 337 70-498 41-397 (425)
178 3b1d_A Betac-S lyase; HET: PLP 99.7 6E-22 2.1E-26 220.3 0.0 292 108-496 69-391 (392)
179 4f4e_A Aromatic-amino-acid ami 99.8 1.4E-19 4.7E-24 203.2 18.9 328 63-495 58-419 (420)
180 4adb_A Succinylornithine trans 99.8 8.2E-20 2.8E-24 203.9 16.6 327 61-497 38-399 (406)
181 2q7w_A Aspartate aminotransfer 99.8 2.4E-20 8.2E-25 207.5 11.7 325 64-494 36-395 (396)
182 3lws_A Aromatic amino acid bet 99.8 2.1E-19 7E-24 197.0 19.0 285 107-495 49-356 (357)
183 1ajs_A Aspartate aminotransfer 99.8 1.2E-19 4.3E-24 202.9 17.5 323 66-496 42-409 (412)
184 1ax4_A Tryptophanase; tryptoph 99.8 6.4E-20 2.2E-24 208.8 14.9 347 61-497 42-440 (467)
185 2ez2_A Beta-tyrosinase, tyrosi 99.8 5.2E-19 1.8E-23 200.7 21.4 311 107-497 77-430 (456)
186 3nx3_A Acoat, acetylornithine 99.8 6.4E-19 2.2E-23 196.0 21.5 324 61-496 35-393 (395)
187 1yaa_A Aspartate aminotransfer 99.8 6.8E-20 2.3E-24 205.1 13.4 324 63-496 38-409 (412)
188 3ju7_A Putative PLP-dependent 99.8 5E-19 1.7E-23 195.5 19.8 346 74-498 15-375 (377)
189 2oqx_A Tryptophanase; lyase, p 99.8 5.5E-20 1.9E-24 209.4 12.4 346 61-497 40-441 (467)
190 3h7f_A Serine hydroxymethyltra 99.8 4.4E-19 1.5E-23 200.7 19.4 343 70-500 54-416 (447)
191 3pj0_A LMO0305 protein; struct 99.8 1E-19 3.4E-24 199.6 13.4 287 107-494 50-358 (359)
192 2aeu_A Hypothetical protein MJ 99.8 1.5E-19 5.2E-24 199.5 14.0 289 108-497 61-370 (374)
193 3meb_A Aspartate aminotransfer 99.8 9.1E-19 3.1E-23 198.2 19.5 324 62-496 57-442 (448)
194 2pb2_A Acetylornithine/succiny 99.8 2.5E-18 8.6E-23 192.9 22.4 325 61-496 56-416 (420)
195 3a8u_X Omega-amino acid--pyruv 99.8 2.2E-18 7.5E-23 195.1 22.0 342 62-497 50-446 (449)
196 3i4j_A Aminotransferase, class 99.8 6.5E-18 2.2E-22 190.1 25.4 346 62-497 29-427 (430)
197 2eo5_A 419AA long hypothetical 99.8 7.3E-18 2.5E-22 189.1 25.6 324 61-496 41-416 (419)
198 3dxv_A Alpha-amino-epsilon-cap 99.8 7.1E-18 2.4E-22 190.3 24.9 340 61-499 42-426 (439)
199 2oat_A Ornithine aminotransfer 99.8 2.6E-17 8.8E-22 185.7 28.9 325 61-496 75-437 (439)
200 2zy4_A L-aspartate beta-decarb 99.8 3E-18 1E-22 197.9 21.3 153 126-295 167-338 (546)
201 2hox_A ALLIIN lyase 1; cystein 99.8 2.6E-18 8.9E-23 193.0 19.4 285 107-497 102-424 (427)
202 1z7d_A Ornithine aminotransfer 99.8 8.9E-17 3E-21 180.9 31.1 325 61-497 64-428 (433)
203 3n75_A LDC, lysine decarboxyla 99.8 2E-17 6.8E-22 193.7 24.4 306 107-496 197-558 (715)
204 1zod_A DGD, 2,2-dialkylglycine 99.8 2.3E-17 7.8E-22 185.8 23.1 343 61-496 42-430 (433)
205 3tfu_A Adenosylmethionine-8-am 99.8 3.7E-17 1.3E-21 185.2 23.4 335 63-497 76-452 (457)
206 2cjg_A L-lysine-epsilon aminot 99.8 1.3E-17 4.4E-22 188.8 19.4 333 61-496 53-446 (449)
207 3jzl_A Putative cystathionine 99.7 1.2E-17 4.2E-22 185.4 17.8 285 75-421 32-339 (409)
208 3n5m_A Adenosylmethionine-8-am 99.7 3.9E-16 1.3E-20 176.8 30.3 347 61-496 48-450 (452)
209 3l44_A Glutamate-1-semialdehyd 99.7 7.8E-17 2.7E-21 181.5 23.9 332 60-497 53-429 (434)
210 3i16_A Aluminum resistance pro 99.7 1.4E-17 4.8E-22 185.5 16.9 271 75-401 46-340 (427)
211 3gju_A Putative aminotransfera 99.7 5.6E-16 1.9E-20 175.9 29.5 348 61-497 50-455 (460)
212 4eu1_A Mitochondrial aspartate 99.7 3.1E-17 1.1E-21 183.2 18.5 283 107-495 81-408 (409)
213 4a6r_A Omega transaminase; tra 99.7 6.1E-16 2.1E-20 175.5 27.0 338 61-497 49-448 (459)
214 3dod_A Adenosylmethionine-8-am 99.7 8E-16 2.7E-20 174.0 27.2 343 61-497 43-442 (448)
215 3i5t_A Aminotransferase; pyrid 99.7 3E-15 1E-19 170.4 31.2 345 61-498 53-454 (476)
216 3fq8_A Glutamate-1-semialdehyd 99.7 1.5E-16 5.2E-21 178.7 20.2 329 61-496 51-425 (427)
217 3hvy_A Cystathionine beta-lyas 99.7 1.5E-16 5.1E-21 177.2 19.6 242 107-401 76-340 (427)
218 3hmu_A Aminotransferase, class 99.7 1.2E-15 4.1E-20 173.5 26.8 341 61-498 54-452 (472)
219 3oks_A 4-aminobutyrate transam 99.7 2.6E-15 8.7E-20 169.9 29.3 340 61-496 60-449 (451)
220 4e77_A Glutamate-1-semialdehyd 99.7 7.5E-16 2.6E-20 173.2 23.2 330 60-496 51-427 (429)
221 4ffc_A 4-aminobutyrate aminotr 99.7 2.4E-15 8.2E-20 170.2 27.0 344 61-497 63-448 (453)
222 3k28_A Glutamate-1-semialdehyd 99.7 3.2E-16 1.1E-20 176.2 16.2 332 60-497 51-426 (429)
223 3k7y_A Aspartate aminotransfer 99.7 4.9E-16 1.7E-20 172.7 17.4 291 107-496 74-403 (405)
224 3ht4_A Aluminum resistance pro 99.7 3.1E-16 1.1E-20 175.5 15.3 257 107-421 67-345 (431)
225 2epj_A Glutamate-1-semialdehyd 99.7 1.3E-15 4.4E-20 171.5 20.3 329 61-496 55-429 (434)
226 1ohv_A 4-aminobutyrate aminotr 99.7 8.3E-15 2.8E-19 166.5 27.1 333 60-496 61-469 (472)
227 2e7u_A Glutamate-1-semialdehyd 99.7 2.4E-15 8.2E-20 168.8 21.4 328 61-495 51-424 (424)
228 2cy8_A D-phgat, D-phenylglycin 99.7 4.3E-15 1.5E-19 168.2 23.2 327 62-497 57-434 (453)
229 4h51_A Aspartate aminotransfer 99.6 3.5E-15 1.2E-19 165.9 19.0 334 63-498 53-417 (420)
230 3bc8_A O-phosphoseryl-tRNA(SEC 99.6 4E-15 1.4E-19 164.4 12.3 168 107-289 100-281 (450)
231 3ou5_A Serine hydroxymethyltra 99.6 1.4E-13 4.9E-18 148.9 20.7 335 70-496 63-439 (490)
232 3hl2_A O-phosphoseryl-tRNA(SEC 99.5 6.8E-13 2.3E-17 144.3 19.3 317 110-498 122-461 (501)
233 2yky_A Beta-transaminase; tran 99.0 7.3E-14 2.5E-18 157.2 0.0 333 59-497 97-459 (465)
234 1oru_A YUAD protein; structura 99.3 2.7E-12 9.1E-17 126.4 10.6 159 531-788 8-171 (195)
235 4atq_A 4-aminobutyrate transam 99.3 3.9E-10 1.3E-14 126.4 29.3 348 60-497 62-454 (456)
236 4ao9_A Beta-phenylalanine amin 99.3 6.5E-11 2.2E-15 132.2 20.8 333 59-500 84-448 (454)
237 2lj4_A Peptidyl-prolyl CIS-tra 99.3 1.1E-12 3.6E-17 117.4 3.6 46 3-54 69-114 (115)
238 3ui4_A Peptidyl-prolyl CIS-tra 99.3 1.3E-12 4.4E-17 114.2 3.7 54 3-56 47-100 (101)
239 4e3q_A Pyruvate transaminase; 99.2 2.5E-08 8.5E-13 112.2 32.4 345 60-496 65-466 (473)
240 3i6c_A Peptidyl-prolyl CIS-tra 99.1 1.7E-11 5.7E-16 110.7 3.2 47 3-55 77-123 (123)
241 4g2p_A Chaperone SURA; structu 99.1 1.4E-11 4.8E-16 109.5 2.3 50 3-58 60-109 (110)
242 1jns_A Peptidyl-prolyl CIS-tra 99.1 1.9E-11 6.4E-16 105.2 2.4 48 3-56 44-91 (92)
243 3gpk_A PPIC-type peptidyl-prol 99.1 1.6E-11 5.4E-16 109.0 1.2 52 3-60 56-107 (112)
244 2rqs_A Parvulin-like peptidyl- 99.0 7.8E-11 2.7E-15 102.3 4.0 47 3-55 51-97 (97)
245 1zk6_A Foldase protein PRSA; a 99.0 1.2E-10 3.9E-15 100.5 3.4 47 3-55 45-92 (93)
246 2kgj_A Peptidyl-prolyl CIS-tra 99.0 4.4E-11 1.5E-15 104.7 0.3 51 3-60 47-97 (102)
247 2pv1_A Chaperone SURA; surviVa 99.0 5.6E-11 1.9E-15 104.6 0.9 48 3-56 55-102 (103)
248 2jzv_A Foldase protein PRSA; p 99.0 1.8E-10 6.2E-15 102.8 3.5 47 3-55 65-111 (111)
249 1j6y_A Peptidyl-prolyl CIS-tra 98.9 1.9E-10 6.5E-15 106.5 2.6 45 4-54 94-138 (139)
250 4a0g_A Adenosylmethionine-8-am 98.9 4.2E-08 1.4E-12 117.9 20.4 212 200-497 593-827 (831)
251 3rfw_A Cell-binding factor 2; 98.6 9.1E-09 3.1E-13 106.3 2.6 50 4-59 161-211 (252)
252 3rgc_A Possible periplasmic pr 98.4 7.9E-08 2.7E-12 99.2 3.9 50 4-59 160-209 (252)
253 3nrk_A LIC12922; NC domain, pa 98.3 1.3E-07 4.5E-12 101.3 1.9 48 4-57 214-265 (325)
254 1m5y_A SurviVal protein, survi 98.1 1.1E-06 3.9E-11 97.4 2.9 50 3-58 316-365 (408)
255 1m5y_A SurviVal protein, survi 97.9 1.3E-06 4.3E-11 97.0 0.4 51 3-59 206-256 (408)
256 1o65_A Hypothetical protein YI 97.8 2.7E-05 9.4E-10 78.4 6.8 98 675-790 67-166 (246)
No 1
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=100.00 E-value=8.5e-34 Score=313.95 Aligned_cols=358 Identities=19% Similarity=0.259 Sum_probs=275.4
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVS 141 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~ 141 (815)
++|||+++.+++++.+.+++.+.+.. .+.||+..+.........++++++++++++|+++++ +++|+|+++|+.+++
T Consensus 1 ~iyld~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--i~~~~g~~~a~~~~~ 77 (382)
T 4hvk_A 1 MAYFDYTSAKPVDERILEAMLPYMTE-SFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGT--VVFTSGATEANNLAI 77 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHHHHT-SCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEE--EEEESSHHHHHHHHH
T ss_pred CEeecCCCcCCCCHHHHHHHHHHHHh-hcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCe--EEEECCchHHHHHHH
Confidence 37999999999999999999887754 466776653333333344889999999999998766 999999999999999
Q ss_pred hhhcc---CCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCC
Q psy16512 142 EYFEF---NEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNF 213 (815)
Q Consensus 142 ~al~~---~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~ 213 (815)
.++.+ ++|| |+++..+|+++......++..| .++++.++.++++++++++ .+++++|++++++||
T Consensus 78 ~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i-------~~~~~~v~~~~~~np 150 (382)
T 4hvk_A 78 IGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKL-------RDDTILVSVQHANNE 150 (382)
T ss_dssp HHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHC-------CTTEEEEECCSBCTT
T ss_pred HHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHh-------ccCceEEEEECCCCC
Confidence 98864 7888 8899999999887666665556 4556655666777776644 467999999999999
Q ss_pred CccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccccc
Q psy16512 214 SGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAH 293 (815)
Q Consensus 214 tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~ 293 (815)
||.+.|+++|.++|+ ++|+ +|+|++|+.+..++++...++|++++|+||++| |.|+|+++++++.
T Consensus 151 tG~~~~~~~i~~l~~-----------~~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g-~~g~g~~~~~~~~-- 215 (382)
T 4hvk_A 151 IGTIQPVEEISEVLA-----------GKAA-LHIDATASVGQIEVDVEKIGADMLTISSNDIYG-PKGVGALWIRKEA-- 215 (382)
T ss_dssp TCBBCCHHHHHHHHS-----------SSSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGTS-CTTCEEEEEETTC--
T ss_pred ceeeCCHHHHHHHHH-----------HcCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhcC-CCceEEEEEcCcc--
Confidence 999999999999999 8999 999999999988777766789999999999887 8899999999876
Q ss_pred ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhcccc
Q psy16512 294 VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYS 372 (815)
Q Consensus 294 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~ 372 (815)
.+.+.+.++.. ..++..++++...+.++.++++.+......+ ++..++++++.+.|+++
T Consensus 216 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~--- 275 (382)
T 4hvk_A 216 KLQPVILGGGQ-----------------ENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI--- 275 (382)
T ss_dssp CCCCSSCSSCT-----------------GGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---
T ss_pred CcCcccccCCC-----------------cCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC---
Confidence 35454443322 2456788999999999988888765432333 88999999999999988
Q ss_pred CCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhh-----hhhcCCCHHHHH
Q psy16512 373 NGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSC-----QRFLGLSDITIK 447 (815)
Q Consensus 373 ~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~-----~~~~g~~~~~~~ 447 (815)
|+++++.+.. ...++++.|.+++.+ ..++.+.|.++||.+++|..|..... ...+|++++.
T Consensus 276 ---~~~~~~~~~~----~~~~~~~~~~~~~~~-----~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~-- 341 (382)
T 4hvk_A 276 ---EESYLNGHPE----KRLPNNVNVRFSYIE-----GESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEE-- 341 (382)
T ss_dssp ---TTEEECSCSS----SBCTTEEEEEETTCC-----HHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHH--
T ss_pred ---CCeEEeCCcc----ccCCCEEEEEECCCC-----HHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhh--
Confidence 7899886642 233568888886433 34588889999999999988875431 1223433211
Q ss_pred HHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 448 FHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 448 ~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
..+++|++++.+++++|+++++++|++++.+
T Consensus 342 -------------------~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~ 372 (382)
T 4hvk_A 342 -------------------AHGTLLLTLGRYNTDEDVDRLLEVLPGVIER 372 (382)
T ss_dssp -------------------HHTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -------------------cCCeEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 1378999999999999999999999998754
No 2
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=100.00 E-value=2.6e-32 Score=302.42 Aligned_cols=358 Identities=19% Similarity=0.255 Sum_probs=268.7
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVS 141 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~ 141 (815)
++|||+++.++.++.+.+++.+.+.. .++|+++.+.........++++++++++++|+++++ +++|+|+++|+.+++
T Consensus 1 ~~yld~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~--v~~~~g~t~a~~~~~ 77 (382)
T 4eb5_A 1 MAYFDYTSAKPVDERILEAMLPYMTE-SFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGT--VVFTSGATEANNLAI 77 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHHHHT-SCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEE--EEEESSHHHHHHHHH
T ss_pred CeeeccCCCCCCCHHHHHHHHHHHHh-ccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCe--EEEcCchHHHHHHHH
Confidence 37999999999999999999887754 456776533222112233889999999999998765 999999999999999
Q ss_pred hhhc---cCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCC
Q psy16512 142 EYFE---FNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNF 213 (815)
Q Consensus 142 ~al~---~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~ 213 (815)
.++. .++|| |+++..+|+++......+...| .++++.++.++++.+++++ .+++++|++++++||
T Consensus 78 ~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i-------~~~~~~v~~~~~~np 150 (382)
T 4eb5_A 78 IGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKL-------RDDTILVSVQHANNE 150 (382)
T ss_dssp HHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHC-------CTTEEEEECCSBCTT
T ss_pred HHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHh-------cCCCeEEEEeccCCC
Confidence 9885 26788 8999999999877666554455 4555555556777766544 457899999999999
Q ss_pred CccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccccc
Q psy16512 214 SGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAH 293 (815)
Q Consensus 214 tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~ 293 (815)
||.++|+++|.++|+ ++|++ |+|++++.|..++++..+++|++++|+||++| |+|+|+++++++.
T Consensus 151 tG~~~~l~~i~~l~~-----------~~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~g-~~g~G~~~~~~~~-- 215 (382)
T 4eb5_A 151 IGTIQPVEEISEVLA-----------GKAAL-HIDATASVGQIEVDVEKIGADMLTISSNDIYG-PKGVGALWIRKEA-- 215 (382)
T ss_dssp TCBBCCHHHHHHHHT-----------TSSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGTC-CSSCEEEEEETTC--
T ss_pred ccccCCHHHHHHHHH-----------HCCCE-EEEcchhcCCcccCccccCCCEEEeehHHhcC-CCceEEEEEcccc--
Confidence 999999999999999 89999 99999998877666655578999999999988 8899999998874
Q ss_pred ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhcccc
Q psy16512 294 VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYS 372 (815)
Q Consensus 294 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~ 372 (815)
.+.+.+.+++. ..++..++++...+.++.++++.+......+ ++..++++++.+.|+++
T Consensus 216 ~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~--- 275 (382)
T 4eb5_A 216 KLQPVILGGGQ-----------------ENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI--- 275 (382)
T ss_dssp CCCCSSCSSCT-----------------GGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---
T ss_pred ccCceecCCCc-----------------cccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC---
Confidence 23333332211 1245678889888888888888765422223 88899999999999887
Q ss_pred CCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchh-----hhhhcCCCHHHHH
Q psy16512 373 NGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGS-----CQRFLGLSDITIK 447 (815)
Q Consensus 373 ~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~-----~~~~~g~~~~~~~ 447 (815)
|+++++.+.. ...++++.|.+++. +..++.+.|.++||.+++|..|.+.. ....+|+++.
T Consensus 276 ---~~~~~~~~~~----~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~--- 340 (382)
T 4eb5_A 276 ---EESYLNGHPE----KRLPNNVNVRFSYI-----EGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHE--- 340 (382)
T ss_dssp ---TTEEECSCSS----SBCTTEEEEEETTS-----CHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHH---
T ss_pred ---CCeEEeCCcc----cCCCCEEEEEeCCc-----CHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChh---
Confidence 7888876532 22367888887632 23458888888999999998765432 1111232210
Q ss_pred HHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 448 FHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 448 ~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
...+++|++++.+++++|+++++++|++++.+
T Consensus 341 ------------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (382)
T 4eb5_A 341 ------------------EAHGTLLLTLGRYNTDEDVDRLLEVLPGVIER 372 (382)
T ss_dssp ------------------HHTTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ------------------ccCCeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 01378999999999999999999999988643
No 3
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=300.93 Aligned_cols=346 Identities=14% Similarity=0.091 Sum_probs=257.1
Q ss_pred hhhhhcccccchhhHHHHHHHHhhccccCCCCh---hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEe-cCCchhhHHH
Q psy16512 64 YLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGN---SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIF-TSGATSAIKT 139 (815)
Q Consensus 64 yLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~---~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~-t~g~t~al~~ 139 (815)
-|+.+.+.++|++|++++.+.+.+ .++|+.+. ......+...++++|+.+++++|+++ .++|+| |+|+|+++++
T Consensus 15 ~~n~at~~~~p~~Vl~a~~~~~~~-~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~-~~evif~t~~~T~a~n~ 92 (377)
T 3e77_A 15 TENLYFQSMLPHSVLLEIQKELLD-YKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPD-NYKVIFLQGGGCGQFSA 92 (377)
T ss_dssp CCCEECSCCCCHHHHHHHHHTSSS-GGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCT-TEEEEEESSHHHHHHHH
T ss_pred cccccccCCCCHHHHHHHHHHHHh-cccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCC-CCeEEEEcCchHHHHHH
Confidence 467777889999999999887654 45666553 11122234449999999999999964 346999 5899999999
Q ss_pred HHhhhcc-CCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCC
Q psy16512 140 VSEYFEF-NEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNF 213 (815)
Q Consensus 140 ~~~al~~-~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~ 213 (815)
++.++.. ++|| +++...+|.+. .|.+.+++.| +++++.+...+++.++. .++++|++|+++|.+|.
T Consensus 93 a~~~l~~~~~Gd~v~~~~~g~~~~-~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~-------~i~~~t~lV~~~h~et~ 164 (377)
T 3e77_A 93 VPLNLIGLKAGRCADYVVTGAWSA-KAAEEAKKFGTINIVHPKLGSYTKIPDPSTW-------NLNPDASYVYYCANETV 164 (377)
T ss_dssp HHHHHGGGSTTCEEEECCCSHHHH-HHHHHHTTTSEEEECSCCCSSSCSCCCGGGC-------CCCTTCSCEEEESEETT
T ss_pred HHHhccCCCCCCeEEEEECCHHHH-HHHHHHHHhCCceEEeccCCCcCCCCChHHh-------ccCCCccEEEEeCccCc
Confidence 9999973 2388 66666665543 6778888888 22444344445554433 34578999999999999
Q ss_pred CccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccccc
Q psy16512 214 SGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAH 293 (815)
Q Consensus 214 tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~ 293 (815)
||.+.|+ +++ ++|+++++|++|++|..|+|+++++ ++++|.||++| |+|+|++++++++++
T Consensus 165 tG~~~pi-----i~~-----------~~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~~g-p~G~g~l~~~~~~l~ 225 (377)
T 3e77_A 165 HGVEFDF-----IPD-----------VKGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQKNVG-SAGVTVVIVRDDLLG 225 (377)
T ss_dssp TTEECSS-----CCC-----------CTTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGGTTS-CTTCEEEEEETTSCS
T ss_pred hheEchh-----hhc-----------cCCCEEEEEcccccCCCCCchhhcC--EEEEecccccC-CCccEEEEEcHHHHh
Confidence 9999998 467 7899999999999999999998876 68899999997 999999999999987
Q ss_pred ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh-hhhH--HHHHHHHHHHHHHHHhcc
Q psy16512 294 VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK-RKSF--TNAFELSQYTYFYFKQLS 370 (815)
Q Consensus 294 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~-~~~~--~~~~~l~~~l~~~L~~l~ 370 (815)
.+.+.... +.++... .....+.||+|+.+++++.++++++.+. |... +|.+++++++++.|+++
T Consensus 226 ~~~~~~p~---------~~~~~~~---~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~- 292 (377)
T 3e77_A 226 FALRECPS---------VLEYKVQ---AGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNS- 292 (377)
T ss_dssp CCCTTSCG---------GGCHHHH---HTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred hccCCCCc---------hhhHHHH---hhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhc-
Confidence 76543211 0111100 0123457899999999999999999887 4433 99999999999999998
Q ss_pred ccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC-CccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHH
Q psy16512 371 YSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG-TYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFH 449 (815)
Q Consensus 371 ~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~-~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~ 449 (815)
|++.+..... ..+.+.+++|++++.+. ..++ ..+.+.+.++||.++.|..+
T Consensus 293 -----~g~~~~~~~~---~~rs~~ivsf~~~~~~~~~~~~-~~~l~~l~~~Gi~~~~g~~~------------------- 344 (377)
T 3e77_A 293 -----QGFYVCPVEP---QNRSKMNIPFRIGNAKGDDALE-KRFLDKALELNMLSLKGHRS------------------- 344 (377)
T ss_dssp -----TTSEECCSCG---GGBCSSEEEEEESSTTCCHHHH-HHHHHHHHHTTEESCBCCTT-------------------
T ss_pred -----CCceecCCCH---HHcCCcEEEEEcCCCCCchhHH-HHHHHHHHHCCcEEeCCCCc-------------------
Confidence 6777643221 12334579999987554 2221 23566677899998876321
Q ss_pred hhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 450 FQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 450 ~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+.+|+|++.++|++||++|+++|+++...
T Consensus 345 ------------------~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 345 ------------------VGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp ------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 256999999999999999999999998754
No 4
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=100.00 E-value=8.5e-33 Score=304.58 Aligned_cols=344 Identities=13% Similarity=0.065 Sum_probs=243.1
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHhhccccCCCChh---hhhhhhhhhHHHHHHHHHhHcCCCCCceeEEe-cCCchhh
Q psy16512 61 DICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNS---VLSDFCVSEIDQMRTKILQYFNTDSDHYSVIF-TSGATSA 136 (815)
Q Consensus 61 ~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~---~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~-t~g~t~a 136 (815)
.++||++++.+++|++|++++.+.+.+ .++||.+.+ .....+...++++|+.+++++|+++ .++|+| |+|+|++
T Consensus 26 ~~~yl~~agpt~~p~~V~~a~~~~~~~-~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~-~~evif~t~~~T~a 103 (386)
T 3qm2_A 26 AQVFNFSSGPAMLPAEVLKLAQQELCD-WHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPS-NYKVLFCHGGGRGQ 103 (386)
T ss_dssp -CCEECCSSSCCCCHHHHHHHTCC------------------------CCHHHHHHHHHHHTCCT-TEEEEEEESCTTHH
T ss_pred ccCccccCCCCCCCHHHHHHHHHHHHh-ccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCC-CceEEEEcCCchHH
Confidence 358999999999999999999776653 455666531 1122234449999999999999953 345999 6999999
Q ss_pred HHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc---eEEcC--chhh-hcchhhhhhhhhhhhhcCCCccEEEEec
Q psy16512 137 IKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ---IYSFS--VDDA-RNMLNEFKESQENVENMRHSNSLFVYPA 209 (815)
Q Consensus 137 l~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g---~v~~~--~~~~-~~~~~~~~~l~~~~~~~~~~t~lv~i~~ 209 (815)
+++++.++. ++|| +++...++.+. .|...+++.| +++++ ..+. .+++.++. .++++|++|++++
T Consensus 104 ~n~ai~~l~-~~gd~v~~~~~~~~~~-~~~~~a~~~G~v~~v~~~~~~~G~~~~~~~~~~-------~l~~~t~lV~~~h 174 (386)
T 3qm2_A 104 FAGVPLNLL-GDKTTADYVDAGYWAA-SAIKEAKKYCAPQIIDAKITVDGKRAVKPMREW-------QLSDNAAYLHYCP 174 (386)
T ss_dssp HHHHHHHHC-TTCCEEEEEESSHHHH-HHHHHHTTTSEEEEEECEEEETTEEEECCGGGC-------CCCTTCSCEEECS
T ss_pred HHHHHHhcc-CCCCeEEEEeCCHHHH-HHHHHHHHhCCeEEEecCcccCCCCCCchHHHh-------hcCCCCcEEEEEC
Confidence 999999997 8888 65555544443 5666677766 56666 3443 56666554 3457899999999
Q ss_pred ccCCCccc-cChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEe
Q psy16512 210 ESNFSGTK-YPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVK 288 (815)
Q Consensus 210 ~~n~tG~~-~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~ 288 (815)
.+|.||.+ .|+++|. +|+++++|++|++|..|+|+++++ ++++|.|||+| |+|+|+|+++
T Consensus 175 ~et~tG~~i~pi~~i~----------------~g~~~~vDa~qs~g~~pidv~~~~--~~~~s~hK~lG-P~G~g~l~v~ 235 (386)
T 3qm2_A 175 NETIDGIAIDETPDFG----------------PEVVVTADFSSTILSAPLDVSRYG--VIYAGAQKNIG-PAGLTLVIVR 235 (386)
T ss_dssp EETTTTEECCCCCCCC----------------TTCCEEEECTTTTTSSCCCGGGCS--EEEEETTTTTC-CTTEEEEEEE
T ss_pred CcCCcCEecCchhhhc----------------CCCEEEEEcccccCCCCCCccccC--EEEEecccccC-CCccEEEEEC
Confidence 99999996 8888873 379999999999999999998875 67799999998 9999999999
Q ss_pred cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh-hhhH--HHHHHHHHHHHHH
Q psy16512 289 QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK-RKSF--TNAFELSQYTYFY 365 (815)
Q Consensus 289 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~-~~~~--~~~~~l~~~l~~~ 365 (815)
+++++.+.+..... .++. .........||+|+.+++++.++++++.+. |... ++..++++++++.
T Consensus 236 ~~~~~~~~~~~p~~---------~~~~---~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~ 303 (386)
T 3qm2_A 236 EDLLGKAHESCPSI---------LDYT---VLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGV 303 (386)
T ss_dssp GGGCSCCCTTSCGG---------GCHH---HHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccCCcH---------HHHH---HHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 99987776532110 0010 001123456899999999999999999887 4433 8999999999999
Q ss_pred HHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHH
Q psy16512 366 FKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDIT 445 (815)
Q Consensus 366 L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~ 445 (815)
|+++ +.+....+. ..+.+.+++|.+++. .++ ..+.+.|.++||.++.|..|.
T Consensus 304 l~~~------~~~~~~~~~----~~rs~~iv~f~~~~~---~~~-~~~~~~L~~~gI~~~~g~~~~-------------- 355 (386)
T 3qm2_A 304 IDNS------DFYRNDVAQ----ANRSRMNVPFQLADN---TLD-KVFLEESFAAGLHALKGHRVV-------------- 355 (386)
T ss_dssp HHTC------SSEECCBCG----GGBCSSEEEEEESSG---GGH-HHHHHHHHHTTEECCBCCTTT--------------
T ss_pred HHHC------CCcccCCCH----HHcCceEEEEECCCc---ccc-HHHHHHHHHCCCEEeCCCCCc--------------
Confidence 9987 222322221 123457999999742 122 246667899999998775431
Q ss_pred HHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 446 IKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 446 ~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
+.+|+|++.++|++||++|+++|+++.+.
T Consensus 356 -----------------------~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 356 -----------------------GGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp -----------------------CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------CeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 45999999999999999999999997653
No 5
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=100.00 E-value=2e-31 Score=297.73 Aligned_cols=364 Identities=20% Similarity=0.264 Sum_probs=276.8
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHhhccccCCCCh-h----hhhhhhhhhHHHHHHHHHhHcCC-CCCceeEEecCCch
Q psy16512 61 DICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGN-S----VLSDFCVSEIDQMRTKILQYFNT-DSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~-~----~~~~~~~~~~~~~r~~la~~~g~-~~~~~~iv~t~g~t 134 (815)
+.+|||.+..++.++.+.+++.+.+.. ...|+++. + ..... ..++++++++++|. ++++ |++|+|+|
T Consensus 23 ~~i~l~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~l~~~la~~~~~~~~~~--v~~~~g~t 95 (406)
T 1kmj_A 23 PLAYLDSAASAQKPSQVIDAEAEFYRH-GYAAVHRGIHTLSAQATEK----MENVRKRASLFINARSAEE--LVFVRGTT 95 (406)
T ss_dssp ECEECCTTTCCCCCHHHHHHHHHHHHH-TCCCCSSCSSHHHHHHHHH----HHHHHHHHHHHTTCSCGGG--EEEESSHH
T ss_pred ceEEecCCccCCCCHHHHHHHHHHHHh-hcCCCCCCcchHHHHHHHH----HHHHHHHHHHHcCCCCCCe--EEEeCChh
Confidence 368999998888888898888776654 34456542 1 23344 88999999999998 5665 99999999
Q ss_pred hhHHHHHhhhc---cCCCc-EEEecCCCcchhh-HHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEE
Q psy16512 135 SAIKTVSEYFE---FNEGS-FIYLTDNHTSVLG-MRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLF 205 (815)
Q Consensus 135 ~al~~~~~al~---~~~gd-vv~~~~~h~s~~~-~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv 205 (815)
+|+.+++.++. .++|| |++...+|++... +...+...| .++.+.++.++++.+++++ .+++++|
T Consensus 96 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l-------~~~~~~v 168 (406)
T 1kmj_A 96 EGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLF-------DEKTRLL 168 (406)
T ss_dssp HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHC-------CTTEEEE
T ss_pred HHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHh-------ccCCeEE
Confidence 99999999992 38898 8999999988653 555555445 4455544456677766543 4679999
Q ss_pred EEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEE
Q psy16512 206 VYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGAL 285 (815)
Q Consensus 206 ~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l 285 (815)
++++++||||.++|+++|.++|+ ++|+++|+|++++.|..++++...++|++++|+||+|| |+|+|++
T Consensus 169 ~~~~~~nptG~~~~l~~i~~l~~-----------~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~~g-~~G~G~~ 236 (406)
T 1kmj_A 169 AITHVSNVLGTENPLAEMITLAH-----------QHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYG-PTGIGIL 236 (406)
T ss_dssp EEESBCTTTCCBCCHHHHHHHHH-----------HTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTS-CTTCEEE
T ss_pred EEeCCCccccCcCCHHHHHHHHH-----------HcCCEEEEEchhhcCCCCCcccccCCCEEEEEchhccC-CCCcEEE
Confidence 99999999999999999999999 89999999999998877666655679999999999997 8889999
Q ss_pred EEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh-h-HHHHHHHHHHHH
Q psy16512 286 IVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK-S-FTNAFELSQYTY 363 (815)
Q Consensus 286 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~-~-~~~~~~l~~~l~ 363 (815)
++++++++.+++...+++.......... ..+...+.+++.|++++..++++.++++.+...+. . .++.+++++++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~ 314 (406)
T 1kmj_A 237 YVKEALLQEMPPWEGGGSMIATVSLSEG--TTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYAL 314 (406)
T ss_dssp EECHHHHHHCCCSSCSTTSEEEEETTTE--EEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred EEeHHHHhhcCCcccCCCceeecccccc--cccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 9999888888776666654332211100 01122345677889999999888888888764332 2 288889999999
Q ss_pred HHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCH
Q psy16512 364 FYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSD 443 (815)
Q Consensus 364 ~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~ 443 (815)
+.|+++ |+++++.+. ..++++.|.+++. +..++.+.|.++||.+++|..|..+... .+|.
T Consensus 315 ~~L~~~------~~~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~~~~~~-~~g~-- 374 (406)
T 1kmj_A 315 SQLESV------PDLTLYGPQ------NRLGVIAFNLGKH-----HAYDVGSFLDNYGIAVRTGHHCAMPLMA-YYNV-- 374 (406)
T ss_dssp HHHTTS------TTEEEESCT------TCCSEEEEEETTC-----CHHHHHHHHHHTTEECEEECTTCHHHHH-HTTC--
T ss_pred HHHhcC------CCeEEecCC------CcCCEEEEEECCC-----CHHHHHHHHhhCCcEEEeccccchHHHH-hcCC--
Confidence 999887 688887652 1378888887532 3345788899999999999888754321 1121
Q ss_pred HHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 444 ITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 444 ~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+++|+|++.++|++|+++++++|++++.
T Consensus 375 ------------------------~~~iRis~~~~~t~~~i~~~~~~l~~~~~ 403 (406)
T 1kmj_A 375 ------------------------PAMCRASLAMYNTHEEVDRLVTGLQRIHR 403 (406)
T ss_dssp ------------------------SCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred ------------------------CCeEEEEeecCCCHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999998764
No 6
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=100.00 E-value=1.7e-31 Score=300.40 Aligned_cols=369 Identities=20% Similarity=0.251 Sum_probs=278.8
Q ss_pred cccccchhhhhhhhcccccchhhHHHHHHHHhh-ccccCCCC-hhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCC
Q psy16512 55 GKNHLKDICYLDYTGAGVYSQSQMNQTIEQLKE-NIFSHPHG-NSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSG 132 (815)
Q Consensus 55 d~~~~~~~iyLd~a~~~~~p~~v~~al~~~l~~-~~~~np~s-~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g 132 (815)
+.+..+..+|||+++.++.++.+.+++.+.+.. ..+++|++ .+.........++++++++++++|+++++ |++|+|
T Consensus 16 ~~~~~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~--v~~~~g 93 (423)
T 3lvm_A 16 VYRAMKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPRE--IVFTSG 93 (423)
T ss_dssp ----CCSSEECBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGG--EEEESS
T ss_pred cccccCCCEeecCCCcCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCe--EEEeCC
Confidence 445566789999999999999999988776541 34667766 32222222334889999999999998877 999999
Q ss_pred chhhHHHHHhhhcc---CCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccE
Q psy16512 133 ATSAIKTVSEYFEF---NEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSL 204 (815)
Q Consensus 133 ~t~al~~~~~al~~---~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~l 204 (815)
+++|+.+++.++.. ++|| |+++..+|+++......+...| .++++.++.++++.+++++ .+++++
T Consensus 94 gt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i-------~~~~~~ 166 (423)
T 3lvm_A 94 ATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAM-------RDDTIL 166 (423)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHC-------CTTEEE
T ss_pred hHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhc-------CCCcEE
Confidence 99999999998862 3788 8888999999877665554445 4555665666777776644 467999
Q ss_pred EEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceE
Q psy16512 205 FVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGA 284 (815)
Q Consensus 205 v~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~ 284 (815)
|++++++||||.+.|+++|.++|+ ++|+++|+|++++.+..++++...++|++++|+||++| |.|+|+
T Consensus 167 v~~~~~~nptG~~~~l~~i~~l~~-----------~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g-~~g~G~ 234 (423)
T 3lvm_A 167 VSIMHVNNEIGVVQDIAAIGEMCR-----------ARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYG-PKGIGA 234 (423)
T ss_dssp EECCSBCTTTCBBCCHHHHHHHHH-----------HHTCEEEEECTTTTTTSCCCTTTSCCSEEEEESTTTTS-CSSCEE
T ss_pred EEEeCCCCCCccccCHHHHHHHHH-----------HcCCEEEEEhhhhcCCCCcChhhcCCCEEEechHHhcC-CCCeEE
Confidence 999999999999999999999999 89999999999999888888888889999999999888 778999
Q ss_pred EEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHH
Q psy16512 285 LIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTY 363 (815)
Q Consensus 285 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~ 363 (815)
++++++..+.+.+...+++. ...+..++++...+.++.++++.+....... ++.+++++++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~ 297 (423)
T 3lvm_A 235 LYVRRKPRVRIEAQMHGGGH-----------------ERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLW 297 (423)
T ss_dssp EEECBTTBCCCCCSSCSSCT-----------------TTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccccCCCCccccCCcc-----------------cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887777665544332 1246678899999999988888776542333 88999999999
Q ss_pred HHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhh-----hhh
Q psy16512 364 FYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSC-----QRF 438 (815)
Q Consensus 364 ~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~-----~~~ 438 (815)
+.|+++ |+++++.+.. ...++++.|.+.+.+ ..++.+.|.+ |.+++|.+|.+... ...
T Consensus 298 ~~L~~~------~~~~~~~~~~----~~~~~~~~~~~~~~~-----~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~ 360 (423)
T 3lvm_A 298 NGIKDI------EEVYLNGDLE----HGAPNILNVSFNYVE-----GESLIMALKD--LAVSSGSACTSASLEPSYVLRA 360 (423)
T ss_dssp HHHTTS------TTEEEESCST----TBCTTEEEEEETTSC-----HHHHHHHTTT--EECBCCCC-----CCCCHHHHH
T ss_pred HHHhcC------CCEEEeCCcc----ccCCCeEEEEeCCCC-----HHHHHHHHhh--heeccCccccCCCccccHHHHH
Confidence 999888 7899887643 234578888884432 3357777766 99999988876432 122
Q ss_pred cCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhcC
Q psy16512 439 LGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQA 499 (815)
Q Consensus 439 ~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~~ 499 (815)
+|++.. ...+++|++++..++++|+++++++|++++..-.
T Consensus 361 ~g~~~~---------------------~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~ 400 (423)
T 3lvm_A 361 LGLNDE---------------------LAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLR 400 (423)
T ss_dssp HTCCHH---------------------HHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcc---------------------ccCceEEEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 333221 1137899999999999999999999999876543
No 7
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=100.00 E-value=6.3e-31 Score=291.42 Aligned_cols=357 Identities=18% Similarity=0.220 Sum_probs=260.1
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHh
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSE 142 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~ 142 (815)
+|||+++.+..++.+.+++.+.+.. .+.+|++.+...........++++++++++|+++++ |++|+|+|+|+.+++.
T Consensus 3 ~yld~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~--v~~~~g~t~a~~~~~~ 79 (384)
T 1eg5_A 3 VYFDNNATTRVDDRVLEEMIVFYRE-KYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSE--IFFTSCATESINWILK 79 (384)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHT-CCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGG--EEEESCHHHHHHHHHH
T ss_pred EEEecCccCCCCHHHHHHHHHHHHh-cCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCe--EEEECCHHHHHHHHHH
Confidence 7999999999999999999887654 455665432111111223789999999999998776 9999999999999999
Q ss_pred hhcc---CCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCC
Q psy16512 143 YFEF---NEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFS 214 (815)
Q Consensus 143 al~~---~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t 214 (815)
++.. ++|| |+++..+|+++......+...| .++.+.++.++++.+++++ .+++++|++++++|||
T Consensus 80 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i-------~~~~~~v~~~~~~npt 152 (384)
T 1eg5_A 80 TVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLV-------DEDTFLVSIMAANNEV 152 (384)
T ss_dssp HHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHC-------CTTEEEEEEESBCTTT
T ss_pred hhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHh-------CCCCeEEEEECCCCCc
Confidence 9873 6888 8899999998876665444455 3444444456666666543 4579999999999999
Q ss_pred ccccChHHHHHHhhccccccccccCCCC--eEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccc
Q psy16512 215 GTKYPLSWCNTVHRNHVFKKHFKCSRSN--CFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSA 292 (815)
Q Consensus 215 G~~~~l~~I~~l~~~~~~~~~~~~~~~g--i~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~ 292 (815)
|.++|+++|.++|+ ++| +++|+|++++.+..++++..+++|++++|+||++| |+|+|++++++++
T Consensus 153 G~~~~~~~i~~l~~-----------~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g-~~G~G~~~~~~~~- 219 (384)
T 1eg5_A 153 GTIQPVEDVTRIVK-----------KKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHG-PKGVGITYIRKGV- 219 (384)
T ss_dssp CBBCCHHHHHHHHH-----------HHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTS-CTTCEEEEECTTS-
T ss_pred ccccCHHHHHHHHH-----------hcCCceEEEEEhhhhcCCcccCchhcCCCEEEecHHHhcC-CCceEEEEEcCCC-
Confidence 99999999999999 788 99999999998877777776789999999999988 8789999999875
Q ss_pred cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccc
Q psy16512 293 HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSY 371 (815)
Q Consensus 293 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~ 371 (815)
.+.+.+.+++. ..++..++++...+.++.++++.+....... ++..++++++.+.|++.
T Consensus 220 -~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 279 (384)
T 1eg5_A 220 -PIRPLIHGGGQ-----------------ERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNL-- 279 (384)
T ss_dssp -CCCCSBCSSCT-----------------TTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred -ccccccccCcc-----------------cccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC--
Confidence 23333222111 1234567889999988888888754332233 88889999999999874
Q ss_pred cCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhh-----hhhcCCCHHHH
Q psy16512 372 SNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSC-----QRFLGLSDITI 446 (815)
Q Consensus 372 ~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~-----~~~~g~~~~~~ 446 (815)
+++++.+.. ...+.++.|.+++. +..++.+.|.++||.+++|..|.+... ...+|++..
T Consensus 280 -----g~~~~~~~~----~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~-- 343 (384)
T 1eg5_A 280 -----GAHIITPLE----ISLPNTLSVSFPNI-----RGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRR-- 343 (384)
T ss_dssp -----TCEECSCTT----SBCTTEEEEECTTC-----CHHHHHHHHHHTTEECBC------------CHHHHTTCCHH--
T ss_pred -----CeEEeCCcc----cCCCCEEEEEeCCC-----CHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChh--
Confidence 677775532 12356788877642 234688888999999999877654321 111222110
Q ss_pred HHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 447 KFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 447 ~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
...+++||+++.+++++|+++++++|++++.+
T Consensus 344 -------------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 375 (384)
T 1eg5_A 344 -------------------IAQGAIRISLCKYNTEEEVDYFLKKIEEILSF 375 (384)
T ss_dssp -------------------HHHHEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -------------------hcCCeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 01378999999999999999999999998753
No 8
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.5e-31 Score=297.36 Aligned_cols=360 Identities=13% Similarity=0.116 Sum_probs=268.9
Q ss_pred ccccccch-hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCC
Q psy16512 54 EGKNHLKD-ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSG 132 (815)
Q Consensus 54 ed~~~~~~-~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g 132 (815)
++|+..+. .+|||+++.+..++.+.+++.+.+.. ...||++.+.........++++++++++++|+++++ |++|+|
T Consensus 18 ~~fp~~~~~~~~ld~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~--v~~~~g 94 (406)
T 3cai_A 18 GLHPSLGDGWVHFDAPAGMLIPDSVATTVSTAFRR-SGASTVGAHPSARRSAAVLDAAREAVADLVNADPGG--VVLGAD 94 (406)
T ss_dssp HTCTTTTSSCEECBGGGCCCCCHHHHHHHHHHHHH-CCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGG--EEEESC
T ss_pred HhhhhcCCCeEEEeCCCcCCCCHHHHHHHHHHHHh-cCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCe--EEEeCC
Confidence 46666654 89999999998899999998877653 334554433322112233889999999999998776 999999
Q ss_pred chhhHHHHHhhh--ccCCCc-EEEecCCCcchhhHHH-Hhhccc----eEEcC-chhhhcchhhhhhhhhhhhhcCCCcc
Q psy16512 133 ATSAIKTVSEYF--EFNEGS-FIYLTDNHTSVLGMRE-LVKTNQ----IYSFS-VDDARNMLNEFKESQENVENMRHSNS 203 (815)
Q Consensus 133 ~t~al~~~~~al--~~~~gd-vv~~~~~h~s~~~~~~-~~~~~g----~v~~~-~~~~~~~~~~~~~l~~~~~~~~~~t~ 203 (815)
+|+++.+++.++ ..++|| |+++..+|+++..... .+...| .++++ .++.++++.+++++ +++++
T Consensus 95 ~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l-------~~~~~ 167 (406)
T 3cai_A 95 RAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLI-------SKSTR 167 (406)
T ss_dssp HHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHC-------CTTEE
T ss_pred hHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHh-------CCCce
Confidence 999999999887 238898 8899999998765433 333334 45555 34456777766543 46799
Q ss_pred EEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcce
Q psy16512 204 LFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLG 283 (815)
Q Consensus 204 lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G 283 (815)
+|++++++||||.+.|+++|.++|+ ++|+++|+|++++.|..++++..+++|++++|+||++| |. +|
T Consensus 168 ~v~~~~~~nptG~~~~l~~i~~l~~-----------~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~~g-~~-~G 234 (406)
T 3cai_A 168 LVAVNSASGTLGGVTDLRAMTKLVH-----------DVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGG-PP-IG 234 (406)
T ss_dssp EEEEESBCTTTCBBCCCHHHHHHHH-----------HTTCEEEEECTTTTTTCCCCHHHHCCSEEEEEGGGGTS-CS-CE
T ss_pred EEEEeCCcCCccccCCHHHHHHHHH-----------HcCCEEEEEcccccCCCCCCchhcCCCEEEeehhhhcC-CC-cC
Confidence 9999999999999999999999999 89999999999998887777666689999999999988 74 88
Q ss_pred -EEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh-------------
Q psy16512 284 -ALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR------------- 349 (815)
Q Consensus 284 -~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~------------- 349 (815)
++++++++++.+++.....+. ..+.++..||++...+.++.++++++...+
T Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~---------------~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~ 299 (406)
T 3cai_A 235 AMVFRDPSVMNSFGSVSTNPYA---------------TGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAV 299 (406)
T ss_dssp EEEESCHHHHHTSCCCCSCTTC---------------CGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHH
T ss_pred eEEEEehHHHhhcCCcccCCCC---------------CccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhh
Confidence 999998887766554211110 013456788999999999989998887643
Q ss_pred --hhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEecc
Q psy16512 350 --KSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRT 426 (815)
Q Consensus 350 --~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~ 426 (815)
..+ ++..++++++.+.|+++ |+++++.+.. ..+++++|.+++. +..++.+.|.++||.++.
T Consensus 300 ~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~L~~~gi~v~~ 363 (406)
T 3cai_A 300 SMQSADAYLNRVFDYLMVSLRSL------PLVMLIGRPE-----AQIPVVSFAVHKV-----PADRVVQRLADNGILAIA 363 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC------TTEEECCCCS-----SBCSEEEEEETTB-----CHHHHHHHHHHTTEECEE
T ss_pred hHHHHHHHHHHHHHHHHHHHhcC------CCeEEcCCcc-----ccCCEEEEEECCc-----CHHHHHHHHHHCCcEEec
Confidence 222 88889999999999987 7888876532 2356888887642 234588888889999998
Q ss_pred CccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHH
Q psy16512 427 GCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 427 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~ 493 (815)
|+ +......+|.+. ..+++|+|++.+++++|+++++++|++
T Consensus 364 g~---~~~~~~~~g~~~-----------------------~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 364 NT---GSRVLDVLGVND-----------------------VGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp CC---SCHHHHHHTTTT-----------------------TTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred CC---hHHHHHHcCCCC-----------------------CCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 76 111111222210 137899999999999999999999975
No 9
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.98 E-value=1.9e-31 Score=297.72 Aligned_cols=361 Identities=20% Similarity=0.208 Sum_probs=255.1
Q ss_pred ccchhhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhH
Q psy16512 58 HLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAI 137 (815)
Q Consensus 58 ~~~~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al 137 (815)
..+..+|||+++.++.++.+.+++.+.+.. .+.||++.+.........++++++++++++|+++++ |++|+|+++|+
T Consensus 17 ~~~~~iyld~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~--v~~~~g~t~al 93 (400)
T 3vax_A 17 RGSHMTYLDAAATTRVDQRVADIVLHWMTA-EFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDE--LIFTSGATESN 93 (400)
T ss_dssp -----CCCCCCCCSSSCHHHHHHHHHHHHH-HHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGG--EEEESCHHHHH
T ss_pred ccCCcEEecCCCCCCCCHHHHHHHHHHHHh-ccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCc--EEEeCCHHHHH
Confidence 445689999999999999999998887654 356776643332222344889999999999998876 99999999999
Q ss_pred HHHHhhhc---cCCCc--EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEe
Q psy16512 138 KTVSEYFE---FNEGS--FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYP 208 (815)
Q Consensus 138 ~~~~~al~---~~~gd--vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~ 208 (815)
.+++.++. .++|| |+++..+|+++......+...| .++++.++.++++++++++ ++++++|+++
T Consensus 94 ~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i-------~~~~~~v~~~ 166 (400)
T 3vax_A 94 NIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERL-------RPDTLLVSLM 166 (400)
T ss_dssp HHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTC-------CTTEEEEECC
T ss_pred HHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhc-------CCCceEEEEE
Confidence 99999884 15676 7777889999877666655555 4555665666777776644 4679999999
Q ss_pred cccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEE-E
Q psy16512 209 AESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALI-V 287 (815)
Q Consensus 209 ~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~-~ 287 (815)
+++||||.+.|+++|.++|+ ++|+++|+|++++.+..+.++... +|++++|+||++| |.|+|+++ +
T Consensus 167 ~~~nptG~~~~l~~i~~la~-----------~~~~~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K~~g-~~g~g~~~~~ 233 (400)
T 3vax_A 167 HVNNETGVIQPVAELAQQLR-----------ATPTYLHVDAAQGYGKVPGDLTTP-IDMISISGHKIGA-PKGVGALVTR 233 (400)
T ss_dssp SBCTTTCBBCCHHHHHHHHT-----------TSSCEEEEECTTTTTTSGGGGGSC-CSEEEEETGGGTS-CSSCEEEEEC
T ss_pred CCCCCceeeCcHHHHHHHHH-----------hcCCEEEEEhhhhcCCCCcChhhc-CcEEEEeHHHhCC-CCceEEEEEe
Confidence 99999999999999999999 899999999999998887777767 9999999999877 88999999 8
Q ss_pred ecccc----cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHH
Q psy16512 288 KQKSA----HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYT 362 (815)
Q Consensus 288 ~~~~~----~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l 362 (815)
+++.+ +.+.+.+.++.. ..++..++++...+.++.++++.+......+ ++..++++++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l 296 (400)
T 3vax_A 234 RREEMDDERVPLEPIMFGGGQ-----------------ERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRL 296 (400)
T ss_dssp BCSSSTTCBCCCCCSSCSSCT-----------------GGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cchhccccccccCceecCCCc-----------------eeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 87322 123333332211 2356788999999999989988766532333 8889999999
Q ss_pred HHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchh-----hhh
Q psy16512 363 YFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGS-----CQR 437 (815)
Q Consensus 363 ~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~-----~~~ 437 (815)
.+.|+ . ++++++.+.. ...++++.|.+++.+ ..++.+.|. +||.+++|..|.+.. ...
T Consensus 297 ~~~L~-~------~~~~~~~~~~----~~~~~~~~~~~~~~~-----~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~ 359 (400)
T 3vax_A 297 LAGLA-S------TSFQVNGDQD----HVVPHILNLSFEDVD-----AEAFLVTLK-DLVAVATGSASTSASFTPSHVLR 359 (400)
T ss_dssp HHHHT-T------TTCEECSCTT----SBCTTEEEEECTTCC-----HHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHH
T ss_pred HHhhC-C------CCEEEeCCcc----cCCCCEEEEEeCCCC-----HHHHHHHHh-cCcEEEecccccCCCCCccHHHH
Confidence 99998 6 6888887653 234578888876433 345888888 999999998776532 222
Q ss_pred hcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEec-cCCCCHHHHHHHHHHHHHHHh
Q psy16512 438 FLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISY-GHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 438 ~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~-g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+|+++.. ..+++|+++ +.+++++|+++++++|++++.
T Consensus 360 ~~g~~~~~---------------------~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~ 398 (400)
T 3vax_A 360 AMGLPEEA---------------------ASKSLRFSWTPGQATDLDVEELARGVAKLKP 398 (400)
T ss_dssp TTTCCHHH---------------------HTSEEEEEEEEC-------------------
T ss_pred HcCCCccc---------------------cCceEEEEccCCCCCHHHHHHHHHHHHHHhc
Confidence 33433211 138999999 999999999999999998764
No 10
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.98 E-value=2.8e-31 Score=302.77 Aligned_cols=367 Identities=12% Similarity=0.142 Sum_probs=270.9
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHhhccc--cCCCC--hhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhh
Q psy16512 61 DICYLDYTGAGVYSQSQMNQTIEQLKENIF--SHPHG--NSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSA 136 (815)
Q Consensus 61 ~~iyLd~a~~~~~p~~v~~al~~~l~~~~~--~np~s--~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~a 136 (815)
..+|||.++.++.++.+.+++.+.+..... .+.+. ....... .+++++++++++|+++++ |++|+|+|++
T Consensus 67 ~~iyld~~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~----~~~l~~~la~~~g~~~~~--v~~t~g~t~a 140 (465)
T 3e9k_A 67 NAIYFLGNSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITG----DESIVGLMKDIVGANEKE--IALMNALTVN 140 (465)
T ss_dssp BCEECBTTTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGT----THHHHGGGHHHHTCCGGG--EEECSCHHHH
T ss_pred CeEEecCCccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHh----HHHHHHHHHHHcCCCcCC--EEEECCHHHH
Confidence 578999999998888887766555432110 01111 0122333 678999999999999877 9999999999
Q ss_pred HHHHHhhhccCCC---c-EEEecCCCcchhh-HHHHhhccc--e----E---EcCchhhhcchhhhhhhhhhhhhcCCCc
Q psy16512 137 IKTVSEYFEFNEG---S-FIYLTDNHTSVLG-MRELVKTNQ--I----Y---SFSVDDARNMLNEFKESQENVENMRHSN 202 (815)
Q Consensus 137 l~~~~~al~~~~g---d-vv~~~~~h~s~~~-~~~~~~~~g--~----v---~~~~~~~~~~~~~~~~l~~~~~~~~~~t 202 (815)
+.+++.++. ++| + ||+...+|++... +...++..| . + +.+.++.+++++++++|+ ...+++
T Consensus 141 l~~~~~~~~-~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~----~~~~~~ 215 (465)
T 3e9k_A 141 LHLLMLSFF-KPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIE----KEGDSI 215 (465)
T ss_dssp HHHHHHHHC-CCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHH----HHGGGE
T ss_pred HHHHHHHhc-cccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHH----hcCCCe
Confidence 999999996 444 4 8999999998655 444555555 1 2 233344567777776553 112479
Q ss_pred cEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEcccccc-ccCCc
Q psy16512 203 SLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMF-GYPTG 281 (815)
Q Consensus 203 ~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~-g~p~G 281 (815)
++|++++++|+||.+.|+++|.++|+ ++|+++++|++|+.|..++++..+++|++++|+||++ ++|.|
T Consensus 216 ~lv~~~~~~n~tG~~~~l~~i~~la~-----------~~g~~vi~D~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~gp~~ 284 (465)
T 3e9k_A 216 AVILFSGVHFYTGQHFNIPAITKAGQ-----------AKGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGG 284 (465)
T ss_dssp EEEEEESBCTTTCBBCCHHHHHHHHH-----------HTTCEEEEECTTTTTTSCCCHHHHTCCEEEECSSSTTCCCTTC
T ss_pred EEEEEeCcccCcceeecHHHHHHHHH-----------HcCCEEEEEhhhhcCCcCCchhhcCCCEEEECcccccccCCCc
Confidence 99999999999999999999999999 8999999999999999998888889999999999999 35878
Q ss_pred ceEEEEecccccccCcccccCceEEEEecCC-cccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhh-H-HHHHHH
Q psy16512 282 LGALIVKQKSAHVLNKTFYGGGTVKISMANE-NFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS-F-TNAFEL 358 (815)
Q Consensus 282 ~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~-~-~~~~~l 358 (815)
+|+++++++..+.+.+...|+........+. .....+.....+++.||++..+++++.++++.+...+.. + ++..++
T Consensus 285 ~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~ 364 (465)
T 3e9k_A 285 IAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLL 364 (465)
T ss_dssp CCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred eEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 9999999998887776655532211000000 000112345678999999999999999999998876422 2 889999
Q ss_pred HHHHHHHHHhcc----ccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchh
Q psy16512 359 SQYTYFYFKQLS----YSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGS 434 (815)
Q Consensus 359 ~~~l~~~L~~l~----~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~ 434 (815)
++++.+.|+++. ..++.++++++.+.. ...++++++|.++ .+... +.+.|.++||.++.+
T Consensus 365 ~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~---~~~~g~~~~~~~~-~~~~~-----l~~~L~~~Gi~v~~~------- 428 (465)
T 3e9k_A 365 TGYLEYLIKHNYGKDKAATKKPVVNIITPSH---VEERGCQLTITFS-VPNKD-----VFQELEKRGVVCDKR------- 428 (465)
T ss_dssp HHHHHHHHHHHCC---------CEEECSCSS---GGGBCSCEEEEEC-CTTCC-----HHHHHHTTTEECEEE-------
T ss_pred HHHHHHHHHhhccccccccCCCCeEEeCCCC---HhhcccEEEEEec-CCHHH-----HHHHHHHCCEEEecC-------
Confidence 999999998741 111224789987653 2345889999887 33333 788888899998621
Q ss_pred hhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEec-cCCCCHHHHHHHHHHHHHHHhh
Q psy16512 435 CQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISY-GHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 435 ~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~-g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+++||+|+ +.+++++||++++++|++++.+
T Consensus 429 --------------------------------~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 429 --------------------------------NPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp --------------------------------TTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred --------------------------------CCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence 037899999 8999999999999999998754
No 11
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.97 E-value=2.5e-30 Score=290.33 Aligned_cols=369 Identities=21% Similarity=0.282 Sum_probs=273.9
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCC-CCCceeEEecCCchhhHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNT-DSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~-~~~~~~iv~t~g~t~al~~ 139 (815)
.+||+.+..+..++.+.+++.+.+.. ...++++. ............++++.+++++|. ++++ +++|+|+|+|+.+
T Consensus 29 ~i~l~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~--v~~~~g~t~a~~~ 105 (420)
T 1t3i_A 29 LVYLDNAATSQKPRAVLEKLMHYYEN-DNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPRE--IVYTRNATEAINL 105 (420)
T ss_dssp CEECBTTTCCCCCHHHHHHHHHHHHH-TCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGG--EEEESSHHHHHHH
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHh-ccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCe--EEEcCChHHHHHH
Confidence 68999988888888888888776653 34455531 111111122378999999999998 6666 9999999999999
Q ss_pred HHhhh----ccCCCc-EEEecCCCcchhh-HHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEec
Q psy16512 140 VSEYF----EFNEGS-FIYLTDNHTSVLG-MRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPA 209 (815)
Q Consensus 140 ~~~al----~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~ 209 (815)
++.++ . ++|| |+++..+|++... +...+...| .++++.++.++++.+++++ .+++++|++++
T Consensus 106 ~~~~~~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l-------~~~~~~v~~~~ 177 (420)
T 1t3i_A 106 VAYSWGMNNL-KAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLL-------SEKTKLVTVVH 177 (420)
T ss_dssp HHHHTHHHHC-CTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHC-------CTTEEEEEEES
T ss_pred HHHHhhhccc-CCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhh-------CCCceEEEEeC
Confidence 99999 5 8898 8899999988643 344444444 4555544456677766543 46799999999
Q ss_pred ccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEec
Q psy16512 210 ESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQ 289 (815)
Q Consensus 210 ~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~ 289 (815)
++||||.++|+++|.++|+ ++|+++|+|++++.+..++++..+++|++++|+||++| |.|+|++++++
T Consensus 178 ~~nptG~~~~l~~i~~l~~-----------~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~-~~g~G~~~~~~ 245 (420)
T 1t3i_A 178 ISNTLGCVNPAEEIAQLAH-----------QAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCA-PTGIGFLYGKE 245 (420)
T ss_dssp BCTTTCBBCCHHHHHHHHH-----------HTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTS-CTTCEEEEECH
T ss_pred CcccccCcCCHHHHHHHHH-----------HcCCEEEEEhhhccCCccCchhhcCCCEEEEehhhhcC-CCceEEEEEch
Confidence 9999999999999999999 89999999999998877666666679999999999887 77899999999
Q ss_pred ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh-h-HHHHHHHHHHHHHHHH
Q psy16512 290 KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK-S-FTNAFELSQYTYFYFK 367 (815)
Q Consensus 290 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~-~-~~~~~~l~~~l~~~L~ 367 (815)
++++.+++...+++........ .+ .+...+.++..|++++...+++.++++++...+. . .++..++++++.+.|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 322 (420)
T 1t3i_A 246 EILEAMPPFFGGGEMIAEVFFD-HF--TTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLG 322 (420)
T ss_dssp HHHHHSCCCSCSTTSEEEECSS-CE--EECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCceecCCCcccccccc-cc--CCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777666555543322111 00 1123345677789999888888878888765332 2 2888999999999999
Q ss_pred hccccCCCCcEEEcCCCCCCCCC-cccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHH
Q psy16512 368 QLSYSNGQPLVELYHDTDYGESK-YQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITI 446 (815)
Q Consensus 368 ~l~~~~~~p~~~l~~~~~~~~~~-~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~ 446 (815)
++ ++++++.+.. .. ..++++.|.+++ .+..++.+.|.++||.+++|..|..+... .+|.
T Consensus 323 ~~------~g~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~gi~v~~~~~~~~~~~~-~~g~----- 382 (420)
T 1t3i_A 323 QI------PQLRLYGPNP---KHGDRAALASFNVAG-----LHASDVATMVDQDGIAIRSGHHCTQPLHR-LFDA----- 382 (420)
T ss_dssp TC------TTEEEESCCG---GGSCBCSEEEEEETT-----BCHHHHHHHHHTTTEECBCSCTTCHHHHH-HTTC-----
T ss_pred hC------CCeEEeCCCc---cccccCCEEEEEECC-----CCHHHHHHHHHHCCeEEeeccccchHHHH-hcCC-----
Confidence 87 6888886531 00 247888888753 23346888899999999999887654221 1111
Q ss_pred HHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 447 KFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 447 ~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+++|+|++.+++++|+++++++|++++..
T Consensus 383 ---------------------~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 412 (420)
T 1t3i_A 383 ---------------------SGSARASLYFYNTKEEIDLFLQSLQATIRF 412 (420)
T ss_dssp ---------------------CCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999997643
No 12
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.97 E-value=8.7e-30 Score=282.97 Aligned_cols=364 Identities=18% Similarity=0.251 Sum_probs=269.8
Q ss_pred cccccchhhhhhhhcccccchhhHHHHHHHHhhccccCCCCh--hh-hhhhhhhhHHHHHHHHHhHcCCCCCceeEEecC
Q psy16512 55 GKNHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGN--SV-LSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTS 131 (815)
Q Consensus 55 d~~~~~~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~--~~-~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~ 131 (815)
+|+...+.+||+.+..++.++.+.+++.+.+......++.+. +. .... ..++++.+++++|+++++ |++|+
T Consensus 10 ~f~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~----~~~l~~~la~~~g~~~~~--v~~~~ 83 (390)
T 1elu_A 10 QFPGLANKTYFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQL----IAQLRQALAETFNVDPNT--ITITD 83 (390)
T ss_dssp CCGGGTTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHH----HHHHHHHHHHHTTSCGGG--EEEES
T ss_pred hcCCCCCeEEecCCccCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHH----HHHHHHHHHHHcCCCHHH--EEEeC
Confidence 445455679999998888888899988877654322334321 11 1234 889999999999998876 99999
Q ss_pred CchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc----eEEcC--chhhhcchhhhhhhhhhhhhcCCCcc
Q psy16512 132 GATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ----IYSFS--VDDARNMLNEFKESQENVENMRHSNS 203 (815)
Q Consensus 132 g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g----~v~~~--~~~~~~~~~~~~~l~~~~~~~~~~t~ 203 (815)
|+++|+.+++.++..++|| |+++..+|+++.. +...+...| .++.+ .+...+++.+++++ .++++
T Consensus 84 g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i-------~~~~~ 156 (390)
T 1elu_A 84 NVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHL-------GPKTR 156 (390)
T ss_dssp SHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTC-------CTTEE
T ss_pred ChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhc-------CCCce
Confidence 9999999999999338898 9999999988764 334444444 34443 23345666665533 46799
Q ss_pred EEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcce
Q psy16512 204 LFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLG 283 (815)
Q Consensus 204 lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G 283 (815)
+|++++++||||.++|+++|.++|++. ++++|+++|+|++++.|..++++...++|+++.|+||++++|.|+|
T Consensus 157 ~v~~~~~~nptG~~~~~~~i~~l~~~~-------~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~G 229 (390)
T 1elu_A 157 LVILSHLLWNTGQVLPLAEIMAVCRRH-------QGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVG 229 (390)
T ss_dssp EEEEESBCTTTCCBCCHHHHHHHHHHC-------CSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCE
T ss_pred EEEEeccccCCceecCHHHHHHHHhhh-------hhhcCcEEEEEcccccCCcCCChhhcCCCEEEccccccccCCCceE
Confidence 999999999999999999999999710 0158999999999999988888777789999999999655588999
Q ss_pred EEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh--h-hHHHHHHHHH
Q psy16512 284 ALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR--K-SFTNAFELSQ 360 (815)
Q Consensus 284 ~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~--~-~~~~~~~l~~ 360 (815)
++++++++++.+.+...+++..........+. ......++..|+++...+.++.++++.+...+ . ..++.+++++
T Consensus 230 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~ 307 (390)
T 1elu_A 230 GLYIHGDCLGEINPTYVGWRSITYGAKGEPTG--WAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSE 307 (390)
T ss_dssp EEEECTTTGGGCCCCSCCTTTEEECTTSCEEE--ECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred EEEECHHhHhhcCCccccCCcccccccCcccc--cccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999998888877666655433211111110 11223466778999999998888998876643 1 2288899999
Q ss_pred HHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcC
Q psy16512 361 YTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLG 440 (815)
Q Consensus 361 ~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g 440 (815)
++.+.|+++ ++++++.+. ...++++.|.++.. .+..++.+.|.++||.+++|..
T Consensus 308 ~l~~~L~~~------~g~~~~~~~-----~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~~~~----------- 361 (390)
T 1elu_A 308 FLWRGLNQL------PHVHCLATS-----APQAGLVSFTVDSP----LGHRAIVQKLEEQRIYLRTIAD----------- 361 (390)
T ss_dssp HHHHHHHHS------TTEEESCSS-----CCSSSEEEEEECSS----SCHHHHHHHHHHTTEECEEETT-----------
T ss_pred HHHHHHHhc------CCcEEecCc-----cccccEEEEEcCCC----CCHHHHHHHHHHCCEEEEecCC-----------
Confidence 999999987 688888642 13478888887521 2334688888899999987530
Q ss_pred CCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHH
Q psy16512 441 LSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 441 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~ 493 (815)
.+++|||++.+++++|+++++++|++
T Consensus 362 ---------------------------~~~iRis~~~~~~~~~i~~~~~~l~~ 387 (390)
T 1elu_A 362 ---------------------------PDCIRACCHYITDEEEINHLLARLAD 387 (390)
T ss_dssp ---------------------------TTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred ---------------------------CCeEEEecccCCCHHHHHHHHHHHHh
Confidence 27899999999999999999999875
No 13
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.97 E-value=7.8e-30 Score=287.86 Aligned_cols=375 Identities=20% Similarity=0.242 Sum_probs=261.1
Q ss_pred cceeeeccccccchhhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeE
Q psy16512 48 YHIIMVEGKNHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSV 127 (815)
Q Consensus 48 yhIi~ved~~~~~~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~i 127 (815)
.++.+.++|+..++.+|||+++.+..++.+.+++.+.+.. .+.+|++.+.........++++++++++++|+++++ |
T Consensus 5 ~~~~~~~~~~~~~~~~~Ld~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~--v 81 (432)
T 3a9z_A 5 RNGARGSVESPPNRKVYMDYNATTPLEPEVIQAVTEAMKE-AWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQD--I 81 (432)
T ss_dssp -------------CCEECBTTTCCCCCHHHHHHHHHHHHH-CCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGG--E
T ss_pred cccccccccCCCCCcEEeeCCccCCCCHHHHHHHHHHHHH-hcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCe--E
Confidence 3556677888888899999999888899999998887654 456676543322222233789999999999998776 9
Q ss_pred EecCCchhhHHHHHhhhcc-------CCC-------------c-EEEecCCCcchhh-HHHHhhccc----eEEcCc-hh
Q psy16512 128 IFTSGATSAIKTVSEYFEF-------NEG-------------S-FIYLTDNHTSVLG-MRELVKTNQ----IYSFSV-DD 180 (815)
Q Consensus 128 v~t~g~t~al~~~~~al~~-------~~g-------------d-vv~~~~~h~s~~~-~~~~~~~~g----~v~~~~-~~ 180 (815)
++|+|+|+|+.+++.++.. ++| + ++++..+|+++.. +..++...| .++++. ++
T Consensus 82 ~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~ 161 (432)
T 3a9z_A 82 IFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNG 161 (432)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTS
T ss_pred EEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccC
Confidence 9999999999999988741 356 3 6667777887655 334444445 445543 44
Q ss_pred hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCC----------eEEEEecc
Q psy16512 181 ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSN----------CFVLLDAA 250 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~g----------i~vivD~a 250 (815)
.++++.+++++ ++++++|++++++||||.++|+++|.++|+ +++ +++|+|++
T Consensus 162 ~~d~~~l~~~i-------~~~~~~v~~~~~~nptG~~~~~~~i~~l~~-----------~~~~~~~~~~~~~~~livDea 223 (432)
T 3a9z_A 162 QVEVEDILAAV-------RPTTCLVTIMLANNETGVIMPISEISRRIK-----------ALNQIRAASGLPRVLVHTDAA 223 (432)
T ss_dssp SCCHHHHHHTC-------CTTEEEEECCSBCTTTCBBCCHHHHHHHHH-----------HHHHHHHHHTCCCCEEEEECT
T ss_pred CcCHHHHHHhc-------cCCceEEEEECcccCcccccCHHHHHHHHH-----------hcCcccccccCCceEEEEEch
Confidence 46666666533 467999999999999999999999999999 777 99999999
Q ss_pred cccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccc-ccccCcccccCceEEEEecCCcccccccCccccccCCC
Q psy16512 251 TYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKS-AHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT 329 (815)
Q Consensus 251 ~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 329 (815)
++.+..++++...++|+++.|+||++| |. +|+++++++. ...+.+.+++++. ..++..|+
T Consensus 224 ~~~~~~~~~~~~~~~d~~~~s~~K~~g-~~-~G~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 284 (432)
T 3a9z_A 224 QALGKRRVDVEDLGVDFLTIVGHKFYG-PR-IGALYVRGVGKLTPLYPMLFGGGQ-----------------ERNFRPGT 284 (432)
T ss_dssp TTTTTSCCCHHHHCCSEEEEEGGGTTC-CS-CEEEEETTBTTTBCCCCSCCSSCG-----------------GGGTSCSC
T ss_pred hhhCCcccChhhcCCCEEEEehhHhcC-Cc-ceEEEEccccccCCcCceeecCCc-----------------cccccCCC
Confidence 998877766655679999999999998 86 9999999876 4455555544432 23567789
Q ss_pred CChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCc--EEEcCCCCCCCCCcccceEEEEEecCCCC
Q psy16512 330 VNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPL--VELYHDTDYGESKYQGNIVNFNLLHKDGT 406 (815)
Q Consensus 330 ~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~--~~l~~~~~~~~~~~~~~i~~f~~~~~~~~ 406 (815)
++..++.++.++++.+......+ ++..++++++.+.|+++ ++ +.+..+.. .....+++++|.+.+...
T Consensus 285 ~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~- 355 (432)
T 3a9z_A 285 ENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLEERLEAE------FGKRIHLNSRFP--GVERLPNTCNFSIQGSQL- 355 (432)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HGGGEEESSCCT--TCCBCTTEEEEEECSTTC-
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc------cCCcEEEeCCCC--cccCCCCEEEEEeCCCCC-
Confidence 99999999988998766532233 88899999999999885 33 44444311 012345688888875321
Q ss_pred ccCHHHHHHhhhcCCcEeccCccCCchhh------hhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCC
Q psy16512 407 YYGYSEVQNLANLKKIQLRTGCHCNPGSC------QRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASN 480 (815)
Q Consensus 407 ~~~~~~v~~~l~~~gI~v~~g~~~~~~~~------~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t 480 (815)
+...+.+.+ .+|.++.|..|.+... ...+|+... ...+++|||++.++|
T Consensus 356 --~~~~~~~~l--~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~---------------------~~~~~iRis~~~~~t 410 (432)
T 3a9z_A 356 --RGYMVLAQC--QTLLASVGASCHSDHEDRPSPVLLSCGIPVD---------------------VARNAVRLSVGRSTT 410 (432)
T ss_dssp --CHHHHHHHC--SSEECBSSCGGGGGGTTSCCHHHHHTTCCHH---------------------HHTTEEEEECCTTCC
T ss_pred --cHHHHHHHh--cCeEEeccccccCCCCCCccHHHHhcCCCcc---------------------ccCceEEEEcCCCCC
Confidence 122344444 4899998888765321 111232210 013789999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy16512 481 WDDVKYFLSFLNQYFL 496 (815)
Q Consensus 481 ~edi~~lv~~L~~~~~ 496 (815)
++|+++++++|++++.
T Consensus 411 ~eei~~~~~~l~~~~~ 426 (432)
T 3a9z_A 411 RAEVDLIVQDLKQAVN 426 (432)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998764
No 14
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.97 E-value=2.1e-30 Score=282.90 Aligned_cols=340 Identities=13% Similarity=0.068 Sum_probs=248.8
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhh---hhhhhhhHHHHHHHHHhHcCCCCCceeEEe-cCCchhhH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVL---SDFCVSEIDQMRTKILQYFNTDSDHYSVIF-TSGATSAI 137 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~---~~~~~~~~~~~r~~la~~~g~~~~~~~iv~-t~g~t~al 137 (815)
+.|+-+++.+++|++|++++.+.+.+ .++||.+.++. ...+...++++|+.+++++|++++ ++|+| |+|+|+++
T Consensus 5 ~~~~f~pgpt~~~~~V~~a~~~~~~~-~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~-~~v~f~t~~~T~a~ 82 (361)
T 3m5u_A 5 RKINFSAGPSTLPLEILEQAQKELCD-YQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDD-YEVLFLQGGASLQF 82 (361)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSS-GGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTT-EEEEEESSHHHHHH
T ss_pred ceEeecCCCCCCcHHHHHHHHHHHHh-cccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCC-ceEEEEcCcHHHHH
Confidence 45677788999999999999887654 45676654211 112334499999999999999643 35888 99999999
Q ss_pred HHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhh--hcchhhhhhhhhhhhhcCCCccEEEEecc
Q psy16512 138 KTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDA--RNMLNEFKESQENVENMRHSNSLFVYPAE 210 (815)
Q Consensus 138 ~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~--~~~~~~~~~l~~~~~~~~~~t~lv~i~~~ 210 (815)
++++.++. +|| +++....+.+ ..|...+++.| +++++.++. .+++. + | +++|++|+++|.
T Consensus 83 n~~~~~~~--~~~~~~~i~~~~~~-~~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~--~-l-------~~~t~lv~~~~~ 149 (361)
T 3m5u_A 83 AMIPMNLA--LNGVCEYANTGVWT-KKAIKEAQILGVNVKTVASSEESNFDHIPRV--E-F-------SDNADYAYICSN 149 (361)
T ss_dssp HHHHHHHC--CSSCEEEEECSHHH-HHHHHHHHHTTCCEEEEEECTTTTSCSCCCC--C-C-------CTTSSEEEEESE
T ss_pred HHHHHhcC--CCCeEEEEeCCHHH-HHHHHHHHHcCCceEEEecccCcCCCcCChh--h-c-------CCCCCEEEEeCC
Confidence 99999987 565 3222221111 24566666666 667776653 34443 2 4 367999999999
Q ss_pred cCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecc
Q psy16512 211 SNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQK 290 (815)
Q Consensus 211 ~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~ 290 (815)
+|.||.+.|. +++ . |+++++|++|++|..++|++. .|++++|.||++| |+|+|+|+++++
T Consensus 150 e~~tG~~~~~-----i~~-----------~-~~~~~vD~~q~~g~~~id~~~--~d~~~~s~~K~~g-p~G~g~l~~~~~ 209 (361)
T 3m5u_A 150 NTIYGTQYQN-----YPK-----------T-KTPLIVDASSDFFSRKVDFSN--IALFYGGVQKNAG-ISGLSCIFIRKD 209 (361)
T ss_dssp ETTTTEECSS-----CCC-----------C-SSCEEEECGGGTTSSCCCCTT--EEEEEEETTTTSS-CTTCEEEEEEHH
T ss_pred CCCcceeCCc-----ccc-----------c-CCEEEEEcccccCCCCCCccc--CCEEEEechhccC-CCccEEEEEcHH
Confidence 9999999873 455 4 999999999999999999975 6999999999998 999999999999
Q ss_pred cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh-hhhH--HHHHHHHHHHHHHHH
Q psy16512 291 SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK-RKSF--TNAFELSQYTYFYFK 367 (815)
Q Consensus 291 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~-~~~~--~~~~~l~~~l~~~L~ 367 (815)
+++.+.+.+... ..++... .......||+|+.+++++.++++++.+. |... +|..++++++++.|+
T Consensus 210 ~~~~~~~~~~p~--------~~~~~~~---~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~ 278 (361)
T 3m5u_A 210 MLERSKNKQIPS--------MLNYLTH---AENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECID 278 (361)
T ss_dssp HHHHHHTCCCCG--------GGCHHHH---HHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcCCCCCc--------eeehHHH---hhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 887665421110 0001000 0123456899999999999999999987 5443 999999999999999
Q ss_pred hccccCCCCcE-EEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHH
Q psy16512 368 QLSYSNGQPLV-ELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITI 446 (815)
Q Consensus 368 ~l~~~~~~p~~-~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~ 446 (815)
++ +++ +++.+.. .+.+.+++|.+++..+ ++ ..+...|.++||.++.|..+
T Consensus 279 ~~------~g~~~~~~~~~----~rs~~ivsf~~~~~~~--~~-~~~~~~L~~~gI~~~~g~~~---------------- 329 (361)
T 3m5u_A 279 LS------NGFYKGHADKK----DRSLMNVSFNIAKNKD--LE-PLFVKEAEEAGMIGLKGHRI---------------- 329 (361)
T ss_dssp TS------TTSEEESSCGG----GBCSSEEEEEESSCTT--HH-HHHHHHHHHTTEECCBCCTT----------------
T ss_pred HC------CCeeeccCCHH----HcCCeEEEEECCCchh--hh-HHHHHHHHHCCCEEecCCCc----------------
Confidence 98 544 6654321 2346799999985211 22 24678889999998876431
Q ss_pred HHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 447 KFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 447 ~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+.+|+|++.++|++||++++++|+++.+.
T Consensus 330 ---------------------~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 330 ---------------------LGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp ---------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------cCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 145999999999999999999999997654
No 15
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.97 E-value=7.5e-30 Score=280.38 Aligned_cols=350 Identities=14% Similarity=0.113 Sum_probs=257.3
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHh
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSE 142 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~ 142 (815)
.++.+.+....++.+.+++.+.+....++..+......+. ++++++++++++|++.. +++++|+|+|+|+.+++.
T Consensus 5 ~~~~~p~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~la~~~g~~~~-~~v~~~~g~t~al~~~~~ 79 (362)
T 3ffr_A 5 KIYFTPGPSELYPTVRQHMITALDEKIGVISHRSKKFEEV----YKTASDNLKTLLELPSN-YEVLFLASATEIWERIIQ 79 (362)
T ss_dssp CEEECSSSCCCCTTHHHHHHHHHHTTTTTSCTTSHHHHHH----HHHHHHHHHHHTTCCTT-EEEEEESCHHHHHHHHHH
T ss_pred ceeccCCCcCCCHHHHHHHHHHhcCCccCcCCCCHHHHHH----HHHHHHHHHHHhCCCCC-cEEEEeCCchHHHHHHHH
Confidence 3455666777889999888777765432222333344455 88999999999998532 359999999999999999
Q ss_pred hhccCCCcEEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcccc
Q psy16512 143 YFEFNEGSFIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKY 218 (815)
Q Consensus 143 al~~~~gdvv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~ 218 (815)
++. ++ ++++....|.+ ..+...++..| .++.+.+..++++.++ .+++|++|++++++||||.++
T Consensus 80 ~l~-~~-~~i~~~~~~~~-~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~---------~~~~~~~v~~~~~~nptG~~~ 147 (362)
T 3ffr_A 80 NCV-EK-KSFHCVNGSFS-KRFYEFAGELGREAYKEEAAFGKGFYPADIT---------VPADAEIICLTHNETSSGVSM 147 (362)
T ss_dssp HHC-SS-EEEEEECSHHH-HHHHHHHHHTTCEEEEEECCTTCCCCGGGCC---------CCTTCCEEEEESEETTTTEEC
T ss_pred hcc-CC-cEEEEcCcHHH-HHHHHHHHHhCCCeEEEecCCCCCCCHHHHh---------ccCCccEEEEEcCCCCcceeC
Confidence 998 66 86655555544 23444555555 5566555556666654 246799999999999999999
Q ss_pred ChHHHHHHhhccccccccccCCC-CeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCc
Q psy16512 219 PLSWCNTVHRNHVFKKHFKCSRS-NCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNK 297 (815)
Q Consensus 219 ~l~~I~~l~~~~~~~~~~~~~~~-gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~ 297 (815)
|+++|.++|+ ++ |+++|+|++++.+..+.++.. +|++++|+||+|++|+|+|++++++++++.+.+
T Consensus 148 ~l~~i~~la~-----------~~p~~~li~D~a~~~~~~~~~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~ 214 (362)
T 3ffr_A 148 PVEDINTFRD-----------KNKDALIFVDAVSSLPYPKFDWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKA 214 (362)
T ss_dssp CHHHHTTSGG-----------GSTTSEEEEECTTTTTSSCCCTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHH
T ss_pred CHHHHHHHHH-----------hCCCCEEEEecccccCCcccChhH--CcEEEEecccccCCCCceEEEEECHHHHHHhhh
Confidence 9999999999 89 999999999999987777654 899999999999988899999999988877766
Q ss_pred ccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHhccccCCC
Q psy16512 298 TFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK--SFTNAFELSQYTYFYFKQLSYSNGQ 375 (815)
Q Consensus 298 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~--~~~~~~~l~~~l~~~L~~l~~~~~~ 375 (815)
...|++.... ...+.............++++...+.++.++++.+...+. ..++..++++++.+.|+++
T Consensus 215 ~~~gg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------ 285 (362)
T 3ffr_A 215 LLAKRKSIGT---YHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESS------ 285 (362)
T ss_dssp HHHTTCCCCS---TTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred ccccCCCCcc---cccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc------
Confidence 5554433111 0111000001111233788999999999999987765432 2288899999999999998
Q ss_pred CcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCc
Q psy16512 376 PLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHI 455 (815)
Q Consensus 376 p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 455 (815)
|+++++.+.. ....+.+++|.+++ +..++.+.|.++||.+++|..|.
T Consensus 286 ~g~~~~~~~~---~~~~~~~~~~~~~~------~~~~~~~~l~~~gi~~~~g~~~~------------------------ 332 (362)
T 3ffr_A 286 KVFSFGVEDA---KLRSMTTIVANTTM------LPGEINKILEPFDMAVGAGYGSK------------------------ 332 (362)
T ss_dssp SSEEESSSCG---GGBCSSEEEEEESS------CHHHHHHHHGGGTEEEEECSGGG------------------------
T ss_pred cCceeccCCh---hhcCCceEEEecCC------CHHHHHHHHHHCCeEEecCcccc------------------------
Confidence 7899886432 12346788888765 23458888888899999874321
Q ss_pred cCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 456 CGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 456 c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
..+++|+|++.+++++|+++++++|++++
T Consensus 333 -----------~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 333 -----------KETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp -----------TTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred -----------CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 13789999999999999999999999864
No 16
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.97 E-value=4.4e-30 Score=285.82 Aligned_cols=359 Identities=10% Similarity=0.015 Sum_probs=261.8
Q ss_pred cccccchhhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 55 GKNHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 55 d~~~~~~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+|+.....+|||+.+....++.+.+++.+.+. + +........ ++++++++++++|+++++ +++|+|+|
T Consensus 2 ~fp~~~~~~yl~~~~~~~~~~~v~~a~~~~~~-----~-~~~~~~~~~----~~~l~~~la~~~g~~~~~--v~~t~g~t 69 (392)
T 2z9v_A 2 RYPEHADPVITLTAGPVNAYPEVLRGLGRTVL-----Y-DYDPAFQLL----YEKVVDKAQKAMRLSNKP--VILHGEPV 69 (392)
T ss_dssp CCCTTSCCSEECSSSCCCCCHHHHHHTTSCCC-----C-TTSHHHHHH----HHHHHHHHHHHTTCSSCC--EEESSCTH
T ss_pred CcccCCCcceeecCCCcCCCHHHHHHHhcccc-----c-cccHHHHHH----HHHHHHHHHHHhCCCCCE--EEEeCCch
Confidence 45666778999999988888888887755332 1 222233344 789999999999998766 99999999
Q ss_pred hhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEec
Q psy16512 135 SAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPA 209 (815)
Q Consensus 135 ~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~ 209 (815)
+|+.+++.++. ++|| |+++..+|++.. +...+...| .++++.++.++++.++++++ + ++++++|++++
T Consensus 70 ~a~~~~~~~~~-~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~---~--~~~~~~v~~~~ 142 (392)
T 2z9v_A 70 LGLEAAAASLI-SPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLK---A--HPEITVVSVCH 142 (392)
T ss_dssp HHHHHHHHHHC-CTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHH---H--CTTCCEEEEES
T ss_pred HHHHHHHHHhc-CCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHh---c--CCCCcEEEEec
Confidence 99999999986 8998 889898888763 444444444 56666655577777776542 0 35689999999
Q ss_pred ccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEec
Q psy16512 210 ESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQ 289 (815)
Q Consensus 210 ~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~ 289 (815)
++||||.++|+++|.++|+ ++|+++|+|++++.|..++++..+++|++++|+||++++|.|+|++++++
T Consensus 143 ~~nptG~~~~l~~i~~l~~-----------~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~ 211 (392)
T 2z9v_A 143 HDTPSGTINPIDAIGALVS-----------AHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSE 211 (392)
T ss_dssp EEGGGTEECCHHHHHHHHH-----------HTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCCCSCCEEEEECH
T ss_pred cCCCCceeccHHHHHHHHH-----------HcCCeEEEEcccccCCcccccccccceEEEecCcccccCCCceeEEEECH
Confidence 9999999999999999999 89999999999998887777766789999999999776688999999998
Q ss_pred ccccccCcccccCceEEEEecCCcccccccC-ccccccCCCCChhHHHHHHHHHHHHHhhhh-h-HHHHHHHHHHHHHHH
Q psy16512 290 KSAHVLNKTFYGGGTVKISMANENFHIKKDG-LFEKFEDGTVNYLAIISLKYGFDTMEKKRK-S-FTNAFELSQYTYFYF 366 (815)
Q Consensus 290 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~gt~~~~~~~al~~al~~l~~~~~-~-~~~~~~l~~~l~~~L 366 (815)
++++.+++...|.+. ....+...... ....+..++++...++++.++++.+...+. . .++..++++++.+.|
T Consensus 212 ~~~~~l~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L 286 (392)
T 2z9v_A 212 RAWAKMKANPLAPRA-----SMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGV 286 (392)
T ss_dssp HHHHHHHTCTTSCCS-----STTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCCc-----eeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 877666432210000 00000000000 012455788999999988888888766532 2 388899999999999
Q ss_pred HhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC-CcEeccCccCCchhhhhhcCCCHHH
Q psy16512 367 KQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK-KIQLRTGCHCNPGSCQRFLGLSDIT 445 (815)
Q Consensus 367 ~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~-gI~v~~g~~~~~~~~~~~~g~~~~~ 445 (815)
+++ +++++.+.. ....+++++|.++.. .+..++.+.|.++ ||.+++|..+.
T Consensus 287 ~~~-------g~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~l~~~L~~~~gi~v~~g~~~~-------------- 338 (392)
T 2z9v_A 287 TAM-------GLSVWAASD---SIASPTTTAVRTPDG----VDEKALRQAARARYGVVFSSGRGET-------------- 338 (392)
T ss_dssp HHT-------TCCBSSSSG---GGBCTTEEEEECCTT----CCHHHHHHHHHHHHCEECEECCGGG--------------
T ss_pred HHc-------CCeeccCCc---cccCCceEEEECCCC----CCHHHHHHHHHhcCCEEEecCCCCC--------------
Confidence 876 455554221 012467888887521 2334577888776 99998875310
Q ss_pred HHHHhhcCCccCCcccccCCCCceEEEEec-cCCCCHHHHHHHHHHHHHHHhh
Q psy16512 446 IKFHFQQGHICGDDKDIIDGKPTGSIRISY-GHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 446 ~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~-g~~~t~edi~~lv~~L~~~~~~ 497 (815)
..+++|+|+ +++++++|+++++++|++++.+
T Consensus 339 ---------------------~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~ 370 (392)
T 2z9v_A 339 ---------------------LGKLTRIGHMGPTAQPIYAIAALTALGGAMNA 370 (392)
T ss_dssp ---------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CCCeEEEeCcccccCHHHHHHHHHHHHHHHHH
Confidence 037899995 5488999999999999998754
No 17
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.97 E-value=1.5e-29 Score=276.96 Aligned_cols=338 Identities=12% Similarity=0.056 Sum_probs=251.4
Q ss_pred hhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhh
Q psy16512 64 YLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEY 143 (815)
Q Consensus 64 yLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~a 143 (815)
|+.+.+..++++.+.+++.+.+.. +........ +.++++++++++|+++++ +++|+|+|+|+.+++.+
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~~~~~------~~~~~~~~~----~~~l~~~la~~~g~~~~~--i~~~~g~t~a~~~~~~~ 70 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALARPQLH------HRTEAAREV----FLKARGLLREAFRTEGEV--LILTGSGTLAMEALVKN 70 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCCC------TTSHHHHHH----HHHHHHHHHHHHTCSSEE--EEEESCHHHHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHhccCCCC------ccCHHHHHH----HHHHHHHHHHHhCCCCce--EEEcCchHHHHHHHHHh
Confidence 566677778888888877654321 222333344 789999999999998655 99999999999999999
Q ss_pred hccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcccc
Q psy16512 144 FEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKY 218 (815)
Q Consensus 144 l~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~ 218 (815)
+. ++|| |+++..+|+++. +...+...| .++++.++.++++.+++ +++++|++++++||||.++
T Consensus 71 ~~-~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~----------~~~~~v~~~~~~nptG~~~ 138 (352)
T 1iug_A 71 LF-APGERVLVPVYGKFSER-FYEIALEAGLVVERLDYPYGDTPRPEDVAK----------EGYAGLLLVHSETSTGALA 138 (352)
T ss_dssp HC-CTTCEEEEEECSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCTTTSCC----------SSCSEEEEESEETTTTEEC
T ss_pred cc-CCCCeEEEEeCCchhHH-HHHHHHHcCCceEEEeCCCCCCCCHHHHhc----------cCCcEEEEEEecCCcceec
Confidence 96 8998 888888898876 555555555 55666554455555432 4689999999999999999
Q ss_pred ChHHHHHHhhccccccccccCCC--CeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccC
Q psy16512 219 PLSWCNTVHRNHVFKKHFKCSRS--NCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLN 296 (815)
Q Consensus 219 ~l~~I~~l~~~~~~~~~~~~~~~--gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~ 296 (815)
|+++|.++|+ ++ |+++|+|++++.|..++++..+++|++++|+||++++|.|+|+++++++.++.++
T Consensus 139 ~l~~i~~l~~-----------~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~ 207 (352)
T 1iug_A 139 DLPALARAFK-----------EKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLK 207 (352)
T ss_dssp CHHHHHHHHH-----------HHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCC
T ss_pred CHHHHHHHHH-----------hhCCCCEEEEECCccccCcceeccccCeeEEEecCcccccCCCceeEEEECHHHHHHhh
Confidence 9999999999 78 9999999999988877777666899999999996666889999999988776554
Q ss_pred cccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCC
Q psy16512 297 KTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQ 375 (815)
Q Consensus 297 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~ 375 (815)
+ ++. +..+.........++..++++...+.++.++++.+......+ ++.+++++++.+.|+++
T Consensus 208 ~---~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~------ 271 (352)
T 1iug_A 208 P---RGY-------YLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG------ 271 (352)
T ss_dssp C---CSS-------TTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred C---CCc-------eeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
Confidence 3 110 000000000011245577899999988888888765432233 88899999999999886
Q ss_pred CcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCc
Q psy16512 376 PLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHI 455 (815)
Q Consensus 376 p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 455 (815)
+++++.+. ..+++++|.++.. .+..++.+.|.++||.+++|..+ .
T Consensus 272 -g~~~~~~~------~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~~~~~----~-------------------- 316 (352)
T 1iug_A 272 -GLRPVPKR------FSPAVAAFYLPEG----VPYARVKEAFAQRGAVIAGGQGP----L-------------------- 316 (352)
T ss_dssp -TCEESCSS------BCTTCEEEECCTT----CCHHHHHHHHHTTTEECEECCGG----G--------------------
T ss_pred -CCcccccc------cCCeEEEEEcCCC----CCHHHHHHHHHHCCEEEEeCCCc----c--------------------
Confidence 56776542 1367888887631 23346888888889999887521 0
Q ss_pred cCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 456 CGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 456 c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
..+++|++++.+++++|+++++++|++++.+-
T Consensus 317 -----------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 317 -----------KGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp -----------TTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 03789999999999999999999999987543
No 18
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.97 E-value=2.5e-29 Score=279.78 Aligned_cols=362 Identities=10% Similarity=0.125 Sum_probs=258.3
Q ss_pred CCcceeeecccccc-chhhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCc
Q psy16512 46 FGYHIIMVEGKNHL-KDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDH 124 (815)
Q Consensus 46 fGyhIi~ved~~~~-~~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~ 124 (815)
|+.+..+. .|++. ++.+|+++.+....++.+.+++.+.+.. +........ .+++++++++++|++++
T Consensus 3 ~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~v~~a~~~~~~~------~~~~~~~~~----~~~l~~~la~~~g~~~~- 70 (393)
T 2huf_A 3 YKVTPPAV-LREPLVTPNKLLMGPGPSNAPQRVLDAMSRPILG------HLHPETLKI----MDDIKEGVRYLFQTNNI- 70 (393)
T ss_dssp CSSCCCGG-GGSCCCCCCCEECSSSCCCCCHHHHHHTTSCCCC------TTSHHHHHH----HHHHHHHHHHHHTCCCS-
T ss_pred ccccchhh-hhcccCCCCeEEecCCCCCCCHHHHHHHHhhhcc------CCCHHHHHH----HHHHHHHHHHHhCCCCC-
Confidence 44444443 35554 3467888888777888887776543321 111122334 88999999999999765
Q ss_pred eeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcC
Q psy16512 125 YSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMR 199 (815)
Q Consensus 125 ~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (815)
+.|++|+|+|+|+.+++.++. ++|| |+++..+|++. .+...++..| .++++.++.++++.++++++
T Consensus 71 ~~i~~~~g~t~a~~~~~~~~~-~~gd~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~------- 141 (393)
T 2huf_A 71 ATFCLSASGHGGMEATLCNLL-EDGDVILIGHTGHWGD-RSADMATRYGADVRVVKSKVGQSLSLDEIRDALL------- 141 (393)
T ss_dssp EEEEESSCHHHHHHHHHHHHC-CTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHH-------
T ss_pred cEEEEcCcHHHHHHHHHHHHh-CCCCEEEEECCCcchH-HHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHh-------
Confidence 249999999999999999996 8998 88888888874 3444444455 56666555567777766543
Q ss_pred C-CccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEcccccccc
Q psy16512 200 H-SNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGY 278 (815)
Q Consensus 200 ~-~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~ 278 (815)
+ ++++|++++++||||.++|+++|.++|+ ++|+++|+|++++.+..++++..+++|++++|+||++++
T Consensus 142 ~~~~~~v~~~~~~nptG~~~~l~~i~~~~~-----------~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~g 210 (393)
T 2huf_A 142 IHKPSVLFLTQGDSSTGVLQGLEGVGALCH-----------QHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGA 210 (393)
T ss_dssp HHCCSEEEEESEETTTTEECCCTTHHHHHH-----------HTTCEEEEECTTTBTTBCCCTTTTTCSEEECCSSSTTCC
T ss_pred ccCCcEEEEEccCCCccccCCHHHHHHHHH-----------HcCCEEEEEcccccCCCCcchhhcCccEEEECCCccccc
Confidence 3 6899999999999999999999999999 899999999999998887777777899999999998766
Q ss_pred CCcceEEEEecccccccCcc-------cccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh-h
Q psy16512 279 PTGLGALIVKQKSAHVLNKT-------FYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-K 350 (815)
Q Consensus 279 p~G~G~l~~~~~~~~~l~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-~ 350 (815)
|+|+|++++++++++.+++. +.+++.. ..++ ......+++.++++..+++++.++++.+...+ .
T Consensus 211 ~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~ 282 (393)
T 2huf_A 211 PPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLV------GDYW--GCFGRPRIYHHTISSTLLYGLREAIAMACEEGLP 282 (393)
T ss_dssp CSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHH------HHHT--TCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred CCCeEEEEECHHHHHHHhhcCCCCceEEEchHHH------Hhhh--ccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHH
Confidence 88999999998877655332 1110000 0000 00112356778999999999988998876432 2
Q ss_pred -hHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhh-cCCcEeccCc
Q psy16512 351 -SFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN-LKKIQLRTGC 428 (815)
Q Consensus 351 -~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~-~~gI~v~~g~ 428 (815)
..++..++++++.+.|+++ +++++.+.. ...+.++.+.++.. .+..++.+.|. ++||.+++|.
T Consensus 283 ~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~L~~~~gi~v~~g~ 347 (393)
T 2huf_A 283 ALIARHEDCAKRLYRGLQDA-------GFELYADPK----DRLSTVTTIKVPQG----VDWLKAAQYAMKTYLVEISGGL 347 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-------TCCBSSCGG----GBCTTEEEEECCTT----CCHHHHHHHHHHHHCEECBCCC
T ss_pred HHHHHHHHHHHHHHHHHHHc-------CCeeccCcc----ccCCcEEEEEcCCC----CCHHHHHHHHHHhCCEEEecCc
Confidence 2388899999999999886 455554421 12245778877521 22345777775 4699998875
Q ss_pred cCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccC-CCCHHHHHHHHHHHHHHHhh
Q psy16512 429 HCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGH-ASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 429 ~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~-~~t~edi~~lv~~L~~~~~~ 497 (815)
.|. ..+++|++++. .++++++++++++|++++.+
T Consensus 348 ~~~-----------------------------------~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~ 382 (393)
T 2huf_A 348 GPT-----------------------------------AGQVFRIGLMGQNATTERVDRVLQVFQEAVAA 382 (393)
T ss_dssp GGG-----------------------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred ccc-----------------------------------cCCEEEEEcccCcCCHHHHHHHHHHHHHHHHH
Confidence 431 03789999944 45799999999999998754
No 19
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.96 E-value=5.8e-29 Score=275.94 Aligned_cols=356 Identities=12% Similarity=0.104 Sum_probs=258.9
Q ss_pred cccccchhhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCC-CCceeEEecCCc
Q psy16512 55 GKNHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTD-SDHYSVIFTSGA 133 (815)
Q Consensus 55 d~~~~~~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~-~~~~~iv~t~g~ 133 (815)
+|+..+..+||++.+.+..++.+.+++.+.+. + +........ .+++++++++++|++ ++ .+++|+|+
T Consensus 13 ~f~~~~~~~~l~~~~~~~~~~~v~~a~~~~~~-----~-~~~~~~~~~----~~~~~~~la~~~g~~~~~--~v~~~~g~ 80 (386)
T 2dr1_A 13 VYEMVKPKYKLFTAGPVACFPEVLEIMKVQMF-----S-HRSKEYRKV----HMDTVERLREFLEVEKGE--VLLVPSSG 80 (386)
T ss_dssp HHHHHSCCSEECCSSSCCCCHHHHHHTTSCCC-----C-TTSHHHHHH----HHHHHHHHHHHHTCSSSE--EEEESSCH
T ss_pred HHhhcCccceeecCCCcCCcHHHHHHHhcccc-----c-ccCHHHHHH----HHHHHHHHHHHhCCCCCc--EEEEeCCh
Confidence 34434556899999888888888777654322 1 111222344 889999999999997 33 49999999
Q ss_pred hhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEe
Q psy16512 134 TSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYP 208 (815)
Q Consensus 134 t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~ 208 (815)
++|+.+++.++. ++|| |+++...|++. .+...+...| .++.+.++..+++.++++++ + .+++++|+++
T Consensus 81 t~a~~~~~~~l~-~~gd~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~---~--~~~~~~v~~~ 153 (386)
T 2dr1_A 81 TGIMEASIRNGV-SKGGKVLVTIIGAFGK-RYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALR---K--NPDVEAVTIT 153 (386)
T ss_dssp HHHHHHHHHHHS-CTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHH---H--CTTCCEEEEE
T ss_pred HHHHHHHHHHhh-cCCCeEEEEcCCchhH-HHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHh---c--CCCCcEEEEE
Confidence 999999999986 8898 88888888762 1333344444 56666555577777776542 0 3578999999
Q ss_pred cccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEe
Q psy16512 209 AESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVK 288 (815)
Q Consensus 209 ~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~ 288 (815)
+++||||.+.|+++|.++|+ ++|+++|+|++++.+..++++..+++|++++|+||++++|.|+|+++++
T Consensus 154 ~~~nptG~~~~l~~i~~l~~-----------~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~ 222 (386)
T 2dr1_A 154 YNETSTGVLNPLPELAKVAK-----------EHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPGLAIGAFS 222 (386)
T ss_dssp SEETTTTEECCHHHHHHHHH-----------HTTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTSTTCCCSSCEEEEEC
T ss_pred eecCCcchhCCHHHHHHHHH-----------HcCCeEEEEccccccCccccccccCCcEEEEeccccccCCCceEEEEEC
Confidence 99999999999999999999 8999999999999888777777778999999999999977789999999
Q ss_pred cccccccCcccccCceEEEEecCCcccccccCcc-ccccCCCCChhHHHHHHHHHHHHHhh-h-hh-HHHHHHHHHHHHH
Q psy16512 289 QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLF-EKFEDGTVNYLAIISLKYGFDTMEKK-R-KS-FTNAFELSQYTYF 364 (815)
Q Consensus 289 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~gt~~~~~~~al~~al~~l~~~-~-~~-~~~~~~l~~~l~~ 364 (815)
+++++.+.+....+.. ..+........ .++..++++...+.++.++++.+... + .. .++.+++++++.+
T Consensus 223 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~ 295 (386)
T 2dr1_A 223 ERFLEIAEKMPERGWY-------FDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVRE 295 (386)
T ss_dssp HHHHHHHTTCTTCCST-------TCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCceE-------EeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 8877666432111110 00000000001 23556788999999998999887654 2 22 3888999999999
Q ss_pred HHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHH
Q psy16512 365 YFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDI 444 (815)
Q Consensus 365 ~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~ 444 (815)
.|+++ +++++.+.. ...++++++.++.. .+..++.+.|.++||.+++|..+.
T Consensus 296 ~L~~~-------g~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~~~~~~------------- 347 (386)
T 2dr1_A 296 GVREI-------GLDILAEPG----HESPTITAVLTPPG----IKGDEVYEAMRKRGFELAKGYGSV------------- 347 (386)
T ss_dssp HHHHT-------TCCBSSCTT----CBCSSEEEEECCTT----CCHHHHHHHHHHTTEECEECCGGG-------------
T ss_pred HHHHc-------CCeeCcCcc----ccCCceEEEEcCCC----CCHHHHHHHHHHCCeEEecCcccc-------------
Confidence 99886 455554421 12467888887631 233457888888899998875210
Q ss_pred HHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 445 TIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 445 ~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
..+++|++++.+++++|+++++++|++++.+
T Consensus 348 ----------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 378 (386)
T 2dr1_A 348 ----------------------KEKTFRIGHMGYMKFEDIQEMLDNLREVINE 378 (386)
T ss_dssp ----------------------TTTEEEEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred ----------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 0378999999999999999999999998643
No 20
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.96 E-value=8.3e-29 Score=274.35 Aligned_cols=344 Identities=13% Similarity=0.105 Sum_probs=250.1
Q ss_pred hhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhc
Q psy16512 66 DYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFE 145 (815)
Q Consensus 66 d~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~ 145 (815)
...+..++++.+.+++.+.+.. +........ ++++++++++++|++++..++++|+|+|+|+. ++.++.
T Consensus 6 ~~~gp~~~~~~v~~a~~~~~~~------~~~~~~~~~----~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~ 74 (384)
T 3zrp_A 6 LHVGPTTIKEDVLVAGLENNVG------FTSKEFVEA----LAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLL 74 (384)
T ss_dssp CCSSCSCCCHHHHHHTTCCSCC------TTSHHHHHH----HHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGC
T ss_pred ccCCCCCCCHHHHHHhhccccc------cccHHHHHH----HHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhc
Confidence 3445556677777766443221 112333444 88999999999999873224999999999999 888886
Q ss_pred cCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccCh
Q psy16512 146 FNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPL 220 (815)
Q Consensus 146 ~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l 220 (815)
++|| |+++...|++. .+...+...| .++++.++.++++.++++++ ..++++|++++++||||.++|+
T Consensus 75 -~~gd~vi~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~------~~~~~~v~~~~~~nptG~~~~l 146 (384)
T 3zrp_A 75 -KPNDKILVVSNGVFGD-RWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVR------KSEYKLVALTHVETSTGVREPV 146 (384)
T ss_dssp -CTTCEEEEECSSHHHH-HHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHH------HSCEEEEEEESEETTTTEECCH
T ss_pred -CCCCEEEEecCCcchH-HHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHH------hCCCcEEEEeCCCCCCceECcH
Confidence 8999 88888777552 2445555556 45556555677777776553 1268999999999999999999
Q ss_pred HHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccccccc-Cccc
Q psy16512 221 SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVL-NKTF 299 (815)
Q Consensus 221 ~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l-~~~~ 299 (815)
++|.++|+ ++|+++|+|++++.+..+.++..+++|++++|+||++++|.|+|+++++++.++.+ ++..
T Consensus 147 ~~i~~l~~-----------~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~ 215 (384)
T 3zrp_A 147 KDVINKIR-----------KYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNS 215 (384)
T ss_dssp HHHHHHHG-----------GGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCC
T ss_pred HHHHHHHH-----------hcCCEEEEECcccccCccccccccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCC
Confidence 99999999 89999999999999988888888889999999999887688999999999887665 3211
Q ss_pred ccCceEEEEecCCcccccccCcc------ccccCCCCChhHHHHHHHHHHHHHhhhh-hH-HHHHHHHHHHHHHHHhccc
Q psy16512 300 YGGGTVKISMANENFHIKKDGLF------EKFEDGTVNYLAIISLKYGFDTMEKKRK-SF-TNAFELSQYTYFYFKQLSY 371 (815)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~~~~~~------~~~~~gt~~~~~~~al~~al~~l~~~~~-~~-~~~~~l~~~l~~~L~~l~~ 371 (815)
.... +.... ...... .....|+++...+.++.++++.+...+. .+ ++.+++++++.+.|+++
T Consensus 216 ~~~~-------~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 285 (384)
T 3zrp_A 216 IAGY-------YLDLR-NWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-- 285 (384)
T ss_dssp SCCS-------TTCHH-HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred CCcc-------cccHH-HHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC--
Confidence 0000 00000 000000 1222368999999999999988776532 22 88899999999999887
Q ss_pred cCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhh
Q psy16512 372 SNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQ 451 (815)
Q Consensus 372 ~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~ 451 (815)
+++++.+.. ....+.+++|.+++. +..++.+.|.++||.+++|.+|.
T Consensus 286 -----g~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~-------------------- 332 (384)
T 3zrp_A 286 -----GLEIVARRP---ESYSNTVTGVILKVA-----DPQKVLAGTVNEGVEFAPGVHPA-------------------- 332 (384)
T ss_dssp -----TCCBSCSSG---GGBCSSEEEEECSSS-----CHHHHHHHHHTTTCCCEECCCTT--------------------
T ss_pred -----CCeEccCcc---cccCccEEEEECCCC-----CHHHHHHHHHHCCEEEecCCCCC--------------------
Confidence 556665431 122367778887652 33468888888899998775321
Q ss_pred cCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 452 QGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 452 ~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
.+++|++++.+++++|+++++++|++++.+-
T Consensus 333 ----------------~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~ 363 (384)
T 3zrp_A 333 ----------------FKYFRIGHMGWVTPNDAIIAISVIERTLRKL 363 (384)
T ss_dssp ----------------CCEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------cCEEEEeccccCCHHHHHHHHHHHHHHHHHc
Confidence 1689999999999999999999999987653
No 21
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.96 E-value=2e-27 Score=266.55 Aligned_cols=360 Identities=12% Similarity=0.107 Sum_probs=255.6
Q ss_pred cccccchhhhhhhhcccccchhhHHHHHHHHhhccccCCCCh--h--hhhhhhhhhHHHHHHHHHhHcCCCCCceeEEec
Q psy16512 55 GKNHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGN--S--VLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFT 130 (815)
Q Consensus 55 d~~~~~~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~--~--~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t 130 (815)
+|+..++.+|||+++.++.++.+.+++.+.+... ++++... + ..... ++++++++++++|+++++ |++|
T Consensus 22 ~f~~~~~~~yld~~~~~~~~~~v~~a~~~~l~~~-~~~~~~~~~~~~~~~~~----~~~l~~~la~~~g~~~~~--v~~~ 94 (416)
T 1qz9_A 22 QFALPEGVIYLDGNSLGARPVAALARAQAVIAEE-WGNGLIRSWNSAGWRDL----SERLGNRLATLIGARDGE--VVVT 94 (416)
T ss_dssp GBCCCTTCEECCTTTSCCCBTTHHHHHHHHHHTC-CCCCGGGHHHHTSGGGH----HHHHHHHHHTTTTCCTTS--EEEC
T ss_pred hCCCCCCeEeecCCCcCCCcHHHHHHHHHHHHHH-HhccCccccchhhHHHH----HHHHHHHHHHHcCCCccc--EEEe
Confidence 4454567899999998888899999988877542 4444321 1 11233 789999999999998776 9999
Q ss_pred CCchhhHHHHHhhhc-c----CCCc-E-EEecCCCcchhhHH-HHhhcc--c--eEEcCchhhhcchhhhhhhhhhhhhc
Q psy16512 131 SGATSAIKTVSEYFE-F----NEGS-F-IYLTDNHTSVLGMR-ELVKTN--Q--IYSFSVDDARNMLNEFKESQENVENM 198 (815)
Q Consensus 131 ~g~t~al~~~~~al~-~----~~gd-v-v~~~~~h~s~~~~~-~~~~~~--g--~v~~~~~~~~~~~~~~~~l~~~~~~~ 198 (815)
+|+++++.+++.++. + ++|| + +++..+|+++.... ..+... | .+.++. ++.+++ .+
T Consensus 95 ~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-----~~~l~~-------~i 162 (416)
T 1qz9_A 95 DTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS-----PEELPQ-------AI 162 (416)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS-----GGGHHH-------HC
T ss_pred CChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc-----HHHHHH-------Hh
Confidence 999999988888763 3 6787 4 45556898766533 333332 5 333332 334443 33
Q ss_pred CCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEcccccccc
Q psy16512 199 RHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGY 278 (815)
Q Consensus 199 ~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~ 278 (815)
++++++|++++++||||.+.|+++|.++|+ ++|+++|+|++++.|..++++..+++|++++|+||++++
T Consensus 163 ~~~~~~v~~~~~~nptG~~~~l~~i~~l~~-----------~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~ 231 (416)
T 1qz9_A 163 DQDTAVVMLTHVNYKTGYMHDMQALTALSH-----------ECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNG 231 (416)
T ss_dssp STTEEEEEEESBCTTTCBBCCHHHHHHHHH-----------HHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCC
T ss_pred CCCceEEEEeccccCcccccCHHHHHHHHH-----------HcCCEEEEEccccccCcCCChhhcCCCEEEecCcccCCC
Confidence 467999999999999999999999999999 899999999999988877666556799999999998754
Q ss_pred CCcc-eEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh-h-HHHH
Q psy16512 279 PTGL-GALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK-S-FTNA 355 (815)
Q Consensus 279 p~G~-G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~-~-~~~~ 355 (815)
+.|+ |++++++++++.+++...++............+ .......++..|+++..+++++.++++.+...+. . .++.
T Consensus 232 g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~ 310 (416)
T 1qz9_A 232 GPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRY-EPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKS 310 (416)
T ss_dssp CTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSC-CBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCCCeEEEEECHHHHhccCCCccccCccccccCCCCcc-CCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 5677 999999998777766543321100000000000 0112234567889999999999899988754332 2 2888
Q ss_pred HHHHHHHHHHHHhccccCCCC--cEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCch
Q psy16512 356 FELSQYTYFYFKQLSYSNGQP--LVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPG 433 (815)
Q Consensus 356 ~~l~~~l~~~L~~l~~~~~~p--~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~ 433 (815)
.++++++.+.|+++. | +++++.+.. ....++++++.+++ ..++.+.|.++||.+...
T Consensus 311 ~~~~~~l~~~L~~~~-----~~~g~~~~~~~~---~~~~~~~~~~~~~~-------~~~l~~~l~~~gi~~~~~------ 369 (416)
T 1qz9_A 311 LALTDLFIELVEQRC-----AAHELTLVTPRE---HAKRGSHVSFEHPE-------GYAVIQALIDRGVIGDYR------ 369 (416)
T ss_dssp HHHHHHHHHHHHHHH-----TTSCCEECSCSS---GGGBCSEEEEECTT-------HHHHHHHHHTTTEECEEE------
T ss_pred HHHHHHHHHHHHhhc-----cCCCeEEeCCCC---HHHcCCEEEEecCC-------HHHHHHHHHhCCcEeccC------
Confidence 999999999998741 3 677776532 11236778887653 235788888889986421
Q ss_pred hhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEecc-CCCCHHHHHHHHHHHHHHHhhcC
Q psy16512 434 SCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYG-HASNWDDVKYFLSFLNQYFLQQA 499 (815)
Q Consensus 434 ~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g-~~~t~edi~~lv~~L~~~~~~~~ 499 (815)
..+++|++++ ++++++|+++++++|++++.+..
T Consensus 370 ---------------------------------~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~~~ 403 (416)
T 1qz9_A 370 ---------------------------------EPRIMRFGFTPLYTTFTEVWDAVQILGEILDRKT 403 (416)
T ss_dssp ---------------------------------TTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ---------------------------------CCCeEEEeCcccCCCHHHHHHHHHHHHHHHhccc
Confidence 0378999998 58999999999999999876543
No 22
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.96 E-value=2e-28 Score=267.77 Aligned_cols=340 Identities=10% Similarity=0.090 Sum_probs=245.3
Q ss_pred hhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhc
Q psy16512 66 DYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFE 145 (815)
Q Consensus 66 d~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~ 145 (815)
.+.+..+.++.+.+++.+.+.. +........ .+++++++++++|++.+.+.+++|+|+++|+.+++.++.
T Consensus 4 ~~~gp~~~~~~v~~a~~~~~~~------~~~~~~~~~----~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~ 73 (353)
T 2yrr_A 4 LTPGPTPIPERVQKALLRPMRG------HLDPEVLRV----NRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD 73 (353)
T ss_dssp CSSSSCCCCHHHHGGGGSCCCC------TTCHHHHHH----HHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS
T ss_pred CCCCCCCCCHHHHHHHhccccc------ccCHHHHHH----HHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc
Confidence 3445566677777766543321 222223344 889999999999986222349999999999999999987
Q ss_pred cCCCcEEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCC-CccEEEEecccCCCccccCh
Q psy16512 146 FNEGSFIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRH-SNSLFVYPAESNFSGTKYPL 220 (815)
Q Consensus 146 ~~~gdvv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~-~t~lv~i~~~~n~tG~~~~l 220 (815)
+ +.++++..+|+++ .+...+...| .++++.++.++++.++++++ + ++++|++++++||||.+.|+
T Consensus 74 -~-d~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~-------~~~~~~v~~~~~~nptG~~~~~ 143 (353)
T 2yrr_A 74 -R-GPVLVLVNGAFSQ-RVAEMAALHGLDPEVLDFPPGEPVDPEAVARALK-------RRRYRMVALVHGETSTGVLNPA 143 (353)
T ss_dssp -C-CCEEEEECSHHHH-HHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHH-------HSCCSEEEEESEETTTTEECCH
T ss_pred -C-CcEEEEcCCCchH-HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHH-------hCCCCEEEEEccCCCcceecCH
Confidence 5 3488888888886 5555555555 56666655577777776553 3 68999999999999999999
Q ss_pred HHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccc
Q psy16512 221 SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFY 300 (815)
Q Consensus 221 ~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~ 300 (815)
++|.++|+ ++|+++|+|++++.+..+.++..+++|++++|+||++++|+|+|+++++++.++.++. ..
T Consensus 144 ~~i~~l~~-----------~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~-~~ 211 (353)
T 2yrr_A 144 EAIGALAK-----------EAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTG-KR 211 (353)
T ss_dssp HHHHHHHH-----------HHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCC-CS
T ss_pred HHHHHHHH-----------HcCCeEEEEcCcccccccccccccCceEEEecCcccccCCCceEEEEECHHHHHHhcc-CC
Confidence 99999999 8999999999998887766665567899999999977668899999999988766642 00
Q ss_pred cCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh-h-HHHHHHHHHHHHHHHHhccccCCCCcE
Q psy16512 301 GGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK-S-FTNAFELSQYTYFYFKQLSYSNGQPLV 378 (815)
Q Consensus 301 g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~-~-~~~~~~l~~~l~~~L~~l~~~~~~p~~ 378 (815)
+.. ..+.............++++...+.++.++++.+...+. . .++.+++++++.+.|+++ ++
T Consensus 212 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~ 276 (353)
T 2yrr_A 212 GWY--------LDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-------GF 276 (353)
T ss_dssp CST--------TCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-------TC
T ss_pred Ccc--------ccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-------CC
Confidence 000 000000000012345678899988888888888765432 2 388899999999999886 56
Q ss_pred EEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCC
Q psy16512 379 ELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGD 458 (815)
Q Consensus 379 ~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~ 458 (815)
+++.+. ...+.+++|.++.. .+..++.+.|.++||.+++|..|.
T Consensus 277 ~~~~~~-----~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~g~~~~--------------------------- 320 (353)
T 2yrr_A 277 RPYPKA-----SPLPTVLVVRPPEG----VDADRLVRALYAEGVAVAGGIGPT--------------------------- 320 (353)
T ss_dssp EESCSS-----SBCTTEEEEECCTT----CCHHHHHHHHHHTTEECEECCGGG---------------------------
T ss_pred ccccCc-----cCCCeEEEEECCCC----CCHHHHHHHHHHCCEEEeCCcccc---------------------------
Confidence 776542 12356777877521 234468888888899999875321
Q ss_pred cccccCCCCceEEEEeccCCCCHHHHH-HHHHHHHHHHh
Q psy16512 459 DKDIIDGKPTGSIRISYGHASNWDDVK-YFLSFLNQYFL 496 (815)
Q Consensus 459 ~~~~~~~~~~g~iRvs~g~~~t~edi~-~lv~~L~~~~~ 496 (815)
..+++|+|++.+++++|++ +++++|++++.
T Consensus 321 --------~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~ 351 (353)
T 2yrr_A 321 --------RGQVLRLGLMGEGARREAYQAFLKALDRALA 351 (353)
T ss_dssp --------TTTCEEEECSGGGSCHHHHHHHHHHHHHHHH
T ss_pred --------CCCeEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 0368999998888999999 99999998764
No 23
>2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1
Probab=99.96 E-value=2e-29 Score=233.54 Aligned_cols=120 Identities=15% Similarity=0.272 Sum_probs=111.1
Q ss_pred EeeeeeccccccCceeeccEEEEEecCCCcCcEEEEEeCCCceEEeccccccccccceeecCCCeEEEEeCCCCeeEEEe
Q psy16512 535 LVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKLEKNLCLVQPNFDITRNIMTLCYKSSGSTVEIG 614 (815)
Q Consensus 535 v~~l~~yPvKs~~g~~~~~~~~~~~~Gl~~DR~~~~~~~~~~~~t~~~~p~l~~i~~~~~~~~~~l~l~~~~~~~~~~~~ 614 (815)
|++|||||||||+|++|+ ++. ++||+|||+|++|+|+|||++|+|++|++.+ +.+.|+|++|+++ ++.|+
T Consensus 1 v~~L~iYPIKSc~g~~l~-~a~------~~DR~wmlvd~~G~~lt~r~~P~Lali~~~~--~~~~L~l~~pg~~-~l~vp 70 (136)
T 2exn_A 1 MSTTAYQPIAECGATTQS-EAA------AYQKRWLVANDAGQWLNRDLCPRLAEVSVEL--RMGYLVLKAPGML-RLDIP 70 (136)
T ss_dssp CCCCCEEEETTTEEECCG-GGG------GTCCSEEEEETTSCEECTTTCGGGGCCEEEE--CSSEEEEECSSSC-EEEEE
T ss_pred CceEEEeccccCCceecC-ccC------ccCCcEEEEeCCCCEEEccCCccccEEEEEe--cCCEEEEEeCCCc-eEEEE
Confidence 578999999999999999 875 9999999999999999999999999999999 5579999999999 99999
Q ss_pred cCCCC---CceeeeEEeCCceeeeecchhHHHHHHHhcCCCCeEEEEecCCCCC
Q psy16512 615 IDNEG---LDLCTSKVCSDKITGFDCGNAVANWLDEQLNRKGLRLIRISKRSSK 665 (815)
Q Consensus 615 ~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~ls~~lg~~~~~L~~~~~~~~~ 665 (815)
+++.. .....+++|++.+.+++||+++++|||++||+| +||++++++..|
T Consensus 71 l~~~~~~~~~~~~v~vw~~~~~a~d~g~~~~~W~S~~Lg~p-~rLv~~~~~~~R 123 (136)
T 2exn_A 71 LDVIEDDDSVRYQMLVGEQTVDVVDEGELAAAWISNHAGVP-CRILKVHPDMAE 123 (136)
T ss_dssp SSCCCSSCSCEEEEEETTEEEEEEECCHHHHHHHHHHTCSS-EEEEEECTTTCC
T ss_pred CCCccccccCceeEEEeCCcceeEeccHHHHHHHHHHhCCC-eEEEEcCCCCcc
Confidence 98753 256789999999999999999999999999999 999999987665
No 24
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.96 E-value=6.9e-28 Score=268.23 Aligned_cols=341 Identities=11% Similarity=0.094 Sum_probs=248.9
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCC-ceeEEecCCchhhHHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSD-HYSVIFTSGATSAIKTV 140 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~-~~~iv~t~g~t~al~~~ 140 (815)
..|+++.+....++.+.+++.+.+.. +........ .+++++++++++|++++ + +++|+|+|+|+.++
T Consensus 34 ~~~l~~~~~~~~~~~v~~a~~~~~~~------~~~~~~~~~----~~~~~~~la~~~g~~~~~~--v~~t~g~t~al~~~ 101 (393)
T 1vjo_A 34 SRLLLGPGPSNAHPSVLQAMNVSPVG------HLDPAFLAL----MDEIQSLLRYVWQTENPLT--IAVSGTGTAAMEAT 101 (393)
T ss_dssp CCEECSSSCCCCCHHHHHHHSSCCCC------TTSHHHHHH----HHHHHHHHHHHHTCCCSCE--EEESSCHHHHHHHH
T ss_pred cceeccCCCCCCCHHHHHHHhccccc------ccCHHHHHH----HHHHHHHHHHHhCCCCCcE--EEEeCchHHHHHHH
Confidence 57899988888888888877553321 111222334 78999999999999766 5 99999999999999
Q ss_pred HhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCC-CccEEEEecccCCC
Q psy16512 141 SEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRH-SNSLFVYPAESNFS 214 (815)
Q Consensus 141 ~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~-~t~lv~i~~~~n~t 214 (815)
+.++. ++|| |++....|++. .+...+...| .++++.++.++++.++++++ + ++++|++++++|||
T Consensus 102 ~~~~~-~~gd~Vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~-------~~~~~~v~~~~~~npt 172 (393)
T 1vjo_A 102 IANAV-EPGDVVLIGVAGYFGN-RLVDMAGRYGADVRTISKPWGEVFSLEELRTALE-------THRPAILALVHAETST 172 (393)
T ss_dssp HHHHC-CTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHH-------HHCCSEEEEESEETTT
T ss_pred HHhcc-CCCCEEEEEcCChhHH-HHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHh-------hCCceEEEEeccCCCc
Confidence 99997 8998 88888888761 1333334444 56666655577777776553 3 68999999999999
Q ss_pred ccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccc
Q psy16512 215 GTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHV 294 (815)
Q Consensus 215 G~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~ 294 (815)
|.+.|+++|.++|+ ++|+++|+|++++.|..++++...++|+++.|+||++++|.|+|++++++++++.
T Consensus 173 G~~~~l~~i~~l~~-----------~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~ 241 (393)
T 1vjo_A 173 GARQPLEGVGELCR-----------EFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEK 241 (393)
T ss_dssp TEECCCTTHHHHHH-----------HHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHH
T ss_pred ceeccHHHHHHHHH-----------HcCCEEEEECCccccCcCCcccccCccEEEEcCcccccCCCceEEEEECHHHHHH
Confidence 99999999999999 8999999999999888888887788999999999998878789999999887765
Q ss_pred cCc-------ccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh-hh-HHHHHHHHHHHHHH
Q psy16512 295 LNK-------TFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-KS-FTNAFELSQYTYFY 365 (815)
Q Consensus 295 l~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-~~-~~~~~~l~~~l~~~ 365 (815)
++. .+++.. |...+ ....++..|+++...+.++.++++.+...+ .. .++..++++++.+.
T Consensus 242 ~~~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~ 310 (393)
T 1vjo_A 242 LQRRRTKVANWYLDMN----------LLGKY-WGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWER 310 (393)
T ss_dssp HHTCSSCCSCSTTCHH----------HHHHH-HSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCCCCceecCcH----------hhhhh-hccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 521 111100 00000 001134445889999999999998865432 22 38889999999999
Q ss_pred HHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC-CcEeccCccCCchhhhhhcCCCHH
Q psy16512 366 FKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK-KIQLRTGCHCNPGSCQRFLGLSDI 444 (815)
Q Consensus 366 L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~-gI~v~~g~~~~~~~~~~~~g~~~~ 444 (815)
|+++ +++++.+.. ...++++.+.++.. .+..++.+.|.++ ||.+++|..|..
T Consensus 311 L~~~-------g~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~------------ 363 (393)
T 1vjo_A 311 LEDI-------GLSLHVEKE----YRLPTLTTVCIPDG----VDGKAVARRLLNEHNIEVGGGLGELA------------ 363 (393)
T ss_dssp HHHT-------TCCBSSCGG----GBCSSEEEEECCTT----CCHHHHHHHHHHHHCEECEECCGGGT------------
T ss_pred HHHc-------CCcccCCcc----ccCCcEEEEEcCCC----CCHHHHHHHHHhhCCEEEecCccccC------------
Confidence 9886 455554431 11356778877521 2234577777776 999998763210
Q ss_pred HHHHHhhcCCccCCcccccCCCCceEEEEec-cCCCCHHHHHHHHHHHHHHH
Q psy16512 445 TIKFHFQQGHICGDDKDIIDGKPTGSIRISY-GHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 445 ~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~-g~~~t~edi~~lv~~L~~~~ 495 (815)
.+++|||+ ++.++++++++++++|++++
T Consensus 364 -----------------------~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 364 -----------------------GKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp -----------------------TTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred -----------------------CCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 37899995 55567888999999999875
No 25
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.96 E-value=1e-27 Score=268.78 Aligned_cols=322 Identities=12% Similarity=0.098 Sum_probs=237.0
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDA 181 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~ 181 (815)
++++++++++++|++++. .+++++|+|+|+.+++.++. ++|| |+++...|++.. +...+...| .++++.++.
T Consensus 46 ~~~l~~~la~~~g~~~~~-~~~~~~s~t~al~~~~~~l~-~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~ 122 (416)
T 3isl_A 46 MNETMEMLRELFQTKNRW-AYPIDGTSRAGIEAVLASVI-EPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLECEWGTV 122 (416)
T ss_dssp HHHHHHHHHHHTTCCCSE-EEEEESCHHHHHHHHHHHHC-CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCC
T ss_pred HHHHHHHHHHHhCCCCCc-EEEecCcHHHHHHHHHHHhc-CCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEecCCCCC
Confidence 889999999999998764 23488999999999999996 9999 888888877622 344444445 667776666
Q ss_pred hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCC
Q psy16512 182 RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLK 261 (815)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~ 261 (815)
++++.++++++ .+++++|++++++||||.+.|+++|.++|+ ++|+++|+|++|+.+..++++.
T Consensus 123 ~d~~~l~~~i~------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~-----------~~~~~li~D~a~~~~~~~~~~~ 185 (416)
T 3isl_A 123 FDPEDIIREIK------KVKPKIVAMVHGETSTGRIHPLKAIGEACR-----------TEDALFIVDAVATIGGCEVKVD 185 (416)
T ss_dssp CCHHHHHHHHH------HHCCSEEEEESEETTTTEECCCHHHHHHHH-----------HTTCEEEEECTTTTTTSCCCTT
T ss_pred CCHHHHHHHHh------hCCCcEEEEEccCCCCceecCHHHHHHHHH-----------HcCCEEEEECCccccCCCcchh
Confidence 78887776553 136899999999999999999999999999 8999999999999998888888
Q ss_pred CCCCcEEEEccccccccCCcceEEEEecccccccCccc---ccCceE----------EEEecCCccccc-ccCccccccC
Q psy16512 262 QHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTF---YGGGTV----------KISMANENFHIK-KDGLFEKFED 327 (815)
Q Consensus 262 ~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~---~g~~~~----------~~~~~~~~~~~~-~~~~~~~~~~ 327 (815)
.+++|++++|+||++++|.|+|++++++++++.+.+.. .||... .....+...... ......++..
T Consensus 186 ~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 265 (416)
T 3isl_A 186 EWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNH 265 (416)
T ss_dssp TTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCS
T ss_pred hcCCCEEEecCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCC
Confidence 88999999999998665889999999998877665321 111110 000000000000 0001345678
Q ss_pred CCCChhHHHHHHHHHHHHHhhh-hhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC
Q psy16512 328 GTVNYLAIISLKYGFDTMEKKR-KSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG 405 (815)
Q Consensus 328 gt~~~~~~~al~~al~~l~~~~-~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~ 405 (815)
++++...+.++.++++.+...+ ..+ ++..++++++.+.|+++ +++++.+.. ...+++++|.++..
T Consensus 266 ~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~----~~~~~~~~~~~~~~-- 332 (416)
T 3isl_A 266 HTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAM-------GLRLFGDDS----CKMPVVTCVEIPGG-- 332 (416)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-------TCCBCSCGG----GBCTTEEEEECCTT--
T ss_pred CCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-------CCEeccCcc----ccCCcEEEEeCCCC--
Confidence 8999999999999998877653 223 88999999999999886 566665432 23367888887532
Q ss_pred CccCHHHHHHhhhcC-CcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHH-
Q psy16512 406 TYYGYSEVQNLANLK-KIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDD- 483 (815)
Q Consensus 406 ~~~~~~~v~~~l~~~-gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ed- 483 (815)
.+..++.+.|.++ ||.+++|... ...+++|++++.+++.+|
T Consensus 333 --~~~~~l~~~L~~~~gi~v~~g~~~-----------------------------------~~~~~iRi~~~~~~~~~e~ 375 (416)
T 3isl_A 333 --IDGESVRDMLLAQFGIEIASSFGP-----------------------------------LAGKIWRIGTMGYSCRKEN 375 (416)
T ss_dssp --CCHHHHHHHHHHHHCEECBCCCST-----------------------------------TTTTEEEEECCGGGCSHHH
T ss_pred --CCHHHHHHHHHHhCCEEEecCCCC-----------------------------------CCCCEEEEecccCCCcHHH
Confidence 2234577777655 9999877421 113789999977777777
Q ss_pred HHHHHHHHHHHHhhc
Q psy16512 484 VKYFLSFLNQYFLQQ 498 (815)
Q Consensus 484 i~~lv~~L~~~~~~~ 498 (815)
+++++++|++++.+-
T Consensus 376 i~~~~~~l~~~~~~~ 390 (416)
T 3isl_A 376 VLFVLAGLEAVLLRH 390 (416)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999987653
No 26
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.95 E-value=1.2e-27 Score=267.92 Aligned_cols=356 Identities=12% Similarity=0.072 Sum_probs=254.0
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHh
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSE 142 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~ 142 (815)
.++...+...+++.+.+++.+.+ .. +........ ++++++++++++|++.++ .+++++|+++|+.+++.
T Consensus 14 ~~~~~pgp~~~~~~v~~a~~~~~----~~--~~~~~~~~~----~~~~~~~la~~~~~~~~~-~v~~~~sgt~al~~~~~ 82 (411)
T 3nnk_A 14 RLLMGPGPINADPRVLRAMSSQL----IG--QYDPAMTHY----MNEVMALYRGVFRTENRW-TMLVDGTSRAGIEAILV 82 (411)
T ss_dssp CEEESSSCCCCCHHHHHHHTSCC----CC--TTCHHHHHH----HHHHHHHHHHHHTCCCSE-EEEEESCHHHHHHHHHH
T ss_pred ceeecCCCCCCCHHHHHHhhccc----cc--cccHHHHHH----HHHHHHHHHHHhCCCCCc-EEEECCCcHHHHHHHHH
Confidence 34555556666777776664322 11 111223344 789999999999997653 47889999999999999
Q ss_pred hhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccc
Q psy16512 143 YFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTK 217 (815)
Q Consensus 143 al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~ 217 (815)
++. ++|| |++...+|++.. +...+...| .++++.++.++++.++++++ ..++++|++++++||||.+
T Consensus 83 ~~~-~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~------~~~~~~v~~~~~~nptG~~ 154 (411)
T 3nnk_A 83 SAI-RPGDKVLVPVFGRFGHL-LCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVK------RIRPRLLLTVQGDTSTTML 154 (411)
T ss_dssp HHC-CTTCEEEEEECSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHH------HHCCSEEEEESEETTTTEE
T ss_pred Hhc-CCCCEEEEecCCchHHH-HHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHh------hCCCeEEEEeCCCCCccee
Confidence 996 8999 888888886622 334444445 56776666678888777553 1268999999999999999
Q ss_pred cChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCc
Q psy16512 218 YPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNK 297 (815)
Q Consensus 218 ~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~ 297 (815)
.|+++|.++|+ ++|+++|+|++++.+..++++...++|++++|+||++++|.|+|++++++++++.+.+
T Consensus 155 ~~l~~i~~l~~-----------~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~ 223 (411)
T 3nnk_A 155 QPLAELGEICR-----------RYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRR 223 (411)
T ss_dssp CCCTTHHHHHH-----------HHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHT
T ss_pred ccHHHHHHHHH-----------HcCCEEEEECCcccCCcccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhh
Confidence 99999999999 8999999999999998888888889999999999986658899999999987765433
Q ss_pred ------ccccCceEEEE-ecCCccccccc-----CccccccCCCCChhHHHHHHHHHHHHHhhhh-h-HHHHHHHHHHHH
Q psy16512 298 ------TFYGGGTVKIS-MANENFHIKKD-----GLFEKFEDGTVNYLAIISLKYGFDTMEKKRK-S-FTNAFELSQYTY 363 (815)
Q Consensus 298 ------~~~g~~~~~~~-~~~~~~~~~~~-----~~~~~~~~gt~~~~~~~al~~al~~l~~~~~-~-~~~~~~l~~~l~ 363 (815)
.+.|++..... .....++.... ....++..++++...+.++.++++.+...+. . .++..++++++.
T Consensus 224 ~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~ 303 (411)
T 3nnk_A 224 RKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALV 303 (411)
T ss_dssp TCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 23332211000 00000000000 0124567889999999999999988776532 2 388999999999
Q ss_pred HHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhc-CCcEeccCccCCchhhhhhcCCC
Q psy16512 364 FYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANL-KKIQLRTGCHCNPGSCQRFLGLS 442 (815)
Q Consensus 364 ~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~-~gI~v~~g~~~~~~~~~~~~g~~ 442 (815)
+.|+++ +++++.+.. ...+++++|.++.. .+..++.+.|.+ +||.+++|.. .
T Consensus 304 ~~L~~~-------g~~~~~~~~----~~~~~~~~~~~~~~----~~~~~l~~~l~~~~gi~v~~g~~----~-------- 356 (411)
T 3nnk_A 304 KGIQAM-------GLETFGDLK----HKMNNVLGVVIPQG----INGDQARKLMLEDFGIEIGTSFG----P-------- 356 (411)
T ss_dssp HHHHHT-------TCCBCSCGG----GBCSSEEEEECCTT----CCHHHHHHHHHHHHSEEEEECCG----G--------
T ss_pred HHHHHc-------CCEeCCCcc----cccccEEEEECCCC----CCHHHHHHHHHHhcCeEEeCccC----C--------
Confidence 999886 566665432 23467888887532 223457777755 5999987631 0
Q ss_pred HHHHHHHhhcCCccCCcccccCCCCceEEEEec-cCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 443 DITIKFHFQQGHICGDDKDIIDGKPTGSIRISY-GHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 443 ~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~-g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
...+++|+++ ++.++++|+++++++|++++.+-
T Consensus 357 -----------------------~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 390 (411)
T 3nnk_A 357 -----------------------LHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYL 390 (411)
T ss_dssp -----------------------GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred -----------------------CCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHc
Confidence 1137899998 77779999999999999987653
No 27
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.95 E-value=1.4e-27 Score=266.04 Aligned_cols=347 Identities=12% Similarity=0.133 Sum_probs=247.6
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCC-ceeEEecCCchhhHHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSD-HYSVIFTSGATSAIKTV 140 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~-~~~iv~t~g~t~al~~~ 140 (815)
..|+.+.+...+++.+.+++.+.+. + +........ ..++++.+++++|++++ + |++|+|+|+|+.++
T Consensus 18 ~~~~~~~~p~~~~~~v~~a~~~~~~-----~-~~~~~~~~~----~~~l~~~la~~~~~~~~~~--v~~~~g~t~al~~~ 85 (396)
T 2ch1_A 18 EKIMMGPGPSNCSKRVLTAMTNTVL-----S-NFHAELFRT----MDEVKDGLRYIFQTENRAT--MCVSGSAHAGMEAM 85 (396)
T ss_dssp CCBCCSSSSCCCCHHHHHHTTSCCC-----C-TTCHHHHHH----HHHHHHHHHHHHTCCCSCE--EEESSCHHHHHHHH
T ss_pred cceeecCCCCCCCHHHHHHhccccc-----c-CCChhHHHH----HHHHHHHHHHHhCCCCCcE--EEECCcHHHHHHHH
Confidence 4456666666677777766543221 1 111122233 78999999999999876 5 99999999999999
Q ss_pred HhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCC-CccEEEEecccCCC
Q psy16512 141 SEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRH-SNSLFVYPAESNFS 214 (815)
Q Consensus 141 ~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~-~t~lv~i~~~~n~t 214 (815)
+.++. ++|| |+++..+|+++. +...+...| .++++.++.++++.++++++ + ++++|++++++|||
T Consensus 86 ~~~~~-~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~-------~~~~~~v~~~~~~npt 156 (396)
T 2ch1_A 86 LSNLL-EEGDRVLIAVNGIWAER-AVEMSERYGADVRTIEGPPDRPFSLETLARAIE-------LHQPKCLFLTHGDSSS 156 (396)
T ss_dssp HHHHC-CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHH-------HHCCSEEEEESEETTT
T ss_pred HHHhc-CCCCeEEEEcCCcccHH-HHHHHHHcCCceEEecCCCCCCCCHHHHHHHHH-------hCCCCEEEEECCCCCC
Confidence 99997 8998 889998888753 333444455 56666555677777776553 3 68999999999999
Q ss_pred ccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccc
Q psy16512 215 GTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHV 294 (815)
Q Consensus 215 G~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~ 294 (815)
|.++|+++|.++|+ ++|+++|+|++++.|..++++..+++|+++.|+||++++|.|+|+++++++.++.
T Consensus 157 G~~~~~~~i~~l~~-----------~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~ 225 (396)
T 2ch1_A 157 GLLQPLEGVGQICH-----------QHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDV 225 (396)
T ss_dssp TEECCCTTHHHHHH-----------HTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHH
T ss_pred ceecCHHHHHHHHH-----------HcCCEEEEEccccccCCccchhhcCcCEEEEcCCccccCCCCeEEEEECHHHHHh
Confidence 99999999999999 8999999999999988888888888999999999988778899999999877665
Q ss_pred cCcc-------cccCceEEEEecCCcccccc-cCccccccCCCCChhHHHHHHHHHHHHHhhh-hh-HHHHHHHHHHHHH
Q psy16512 295 LNKT-------FYGGGTVKISMANENFHIKK-DGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-KS-FTNAFELSQYTYF 364 (815)
Q Consensus 295 l~~~-------~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-~~-~~~~~~l~~~l~~ 364 (815)
+... +++... +...+ .....++..++++..++.++.++++.+...+ .. .++.+++++++.+
T Consensus 226 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~ 296 (396)
T 2ch1_A 226 IRNRRTKSKVFYWDLLL---------LGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYE 296 (396)
T ss_dssp HHTCSSCCSCGGGCHHH---------HHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred hhhccCcccceEechHH---------HHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4321 111000 00000 0011345678899999998888888764332 22 3888999999999
Q ss_pred HHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhc-CCcEeccCccCCchhhhhhcCCCH
Q psy16512 365 YFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANL-KKIQLRTGCHCNPGSCQRFLGLSD 443 (815)
Q Consensus 365 ~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~-~gI~v~~g~~~~~~~~~~~~g~~~ 443 (815)
.|+++ +++++.+.. ....+.++.+.++.. .+..++.+.|.+ +||.+++|..|.
T Consensus 297 ~L~~~-------g~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~L~~~~gi~v~~g~~~~------------ 350 (396)
T 2ch1_A 297 GLGKM-------GLDIFVKDP---RHRLPTVTGIMIPKG----VDWWKVSQYAMNNFSLEVQGGLGPT------------ 350 (396)
T ss_dssp HHHHH-------TCCBSSCSG---GGBCTTEEEEECCTT----CCHHHHHHHHHHHHCBCCBCCCGGG------------
T ss_pred HHHHC-------CCeeccCCc---cccCCceEEEEcCCC----CCHHHHHHHHHHhCCEEEecCcccc------------
Confidence 99887 566665432 012345788877521 233457777755 599998764321
Q ss_pred HHHHHHhhcCCccCCcccccCCCCceEEEEec-cCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 444 ITIKFHFQQGHICGDDKDIIDGKPTGSIRISY-GHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 444 ~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~-g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
..+++||++ ++..+++|+++++++|++++.+-
T Consensus 351 -----------------------~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~ 383 (396)
T 2ch1_A 351 -----------------------FGKAWRVGIMGECSTVQKIQFYLYGFKESLKAT 383 (396)
T ss_dssp -----------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------CCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHh
Confidence 137899999 55668999999999999987654
No 28
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.95 E-value=5e-28 Score=266.98 Aligned_cols=346 Identities=16% Similarity=0.099 Sum_probs=248.2
Q ss_pred hhhhhhh-hcccccchhhHHHHHHHHhhcc---ccCCCCh-hhhhhhhhhhHHHHHHH-HHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDY-TGAGVYSQSQMNQTIEQLKENI---FSHPHGN-SVLSDFCVSEIDQMRTK-ILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~-a~~~~~p~~v~~al~~~l~~~~---~~np~s~-~~~~~~~~~~~~~~r~~-la~~~g~~~~~~~iv~t~g~t 134 (815)
+.+|||. ...+..++.+.+++.+.+.... +++.+.. ...... ..+++++ +++++|++ + |++|+|+|
T Consensus 8 ~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~la~~~~~~--~--v~~~~g~t 79 (371)
T 2e7j_A 8 DFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPP----IHDFIHNQLPKFLGCD--V--ARVTNGAR 79 (371)
T ss_dssp CCEECCHHHHTCCCCHHHHHHHHHC--------------------CC----HHHHHHTHHHHHTTSS--E--EEEESSHH
T ss_pred CcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHH----HHHHHHHHHHHHcCCC--E--EEEeCChH
Confidence 4688998 5567778888888876554321 1111111 223344 8899999 99999986 4 99999999
Q ss_pred hhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEE--cCchhhhcchhhhhhhhhhhhhcCCCccEEEEecc
Q psy16512 135 SAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYS--FSVDDARNMLNEFKESQENVENMRHSNSLFVYPAE 210 (815)
Q Consensus 135 ~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~--~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~ 210 (815)
+|+.+++.++. ++|| |+++..+|+++.......+... .++ .+.+..++++.+++++++... .+++++|+++++
T Consensus 80 ~a~~~~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~--~~~~~~v~~~~~ 156 (371)
T 2e7j_A 80 EAKFAVMHSLA-KKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKK--RGEVVLALITYP 156 (371)
T ss_dssp HHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTT--TSCEEEEEEESS
T ss_pred HHHHHHHHHHh-CCCCEEEEccCcchHHHHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcc--cCCeEEEEEECC
Confidence 99999999996 8998 8899989988766543332222 455 454456677777765531100 157899999999
Q ss_pred cCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecc
Q psy16512 211 SNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQK 290 (815)
Q Consensus 211 ~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~ 290 (815)
+||||.++|+++|.++|+ ++|+++|+|++++.+..++++..+++|++++|+||++++|.|+|+++++++
T Consensus 157 ~nptG~~~~~~~i~~~~~-----------~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~ 225 (371)
T 2e7j_A 157 DGNYGNLPDVKKIAKVCS-----------EYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEE 225 (371)
T ss_dssp CTTTCCCCCHHHHHHHHH-----------TTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTT
T ss_pred CCCCcccCCHHHHHHHHH-----------HcCCeEEEECccccCCCCCChhhcCCCEEEecCCcCCCCCCCcEEEEEech
Confidence 999999999999999999 899999999999998876666666789999999998886778999999998
Q ss_pred cccc-cCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHHH
Q psy16512 291 SAHV-LNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNA--FELSQYTYFYFK 367 (815)
Q Consensus 291 ~~~~-l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~--~~l~~~l~~~L~ 367 (815)
+++. +++...++.. ...++.++++...++++.++++.+.. ...++. +++++++.+.|+
T Consensus 226 ~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~ 286 (371)
T 2e7j_A 226 WAEIVLRRSEKYKNK-----------------EVELLGCTARGATIITLMASFPHVRE--RIKRWDEEVEKARRFAAEME 286 (371)
T ss_dssp TTTTTTCBCSSCTTS-----------------BGGGTTCCCCSHHHHHHHHHHHHHHH--HGGGHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccccCccc-----------------ccccccCCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 8776 6544321110 01244778888888888888888765 233778 899999999998
Q ss_pred hccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHH
Q psy16512 368 QLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIK 447 (815)
Q Consensus 368 ~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~ 447 (815)
++ +++++.+.. ..++++++.++ + ..++.+.|.++||.+++ .. ..+.
T Consensus 287 ~~-------~~~~~~~~~-----~~~~~~~~~~~--~-----~~~~~~~l~~~gi~~~~-~~-------~~~~------- 332 (371)
T 2e7j_A 287 KL-------GIKQLGDNP-----HNHDLMFFHAE--V-----LYEISKKAKGGRFFLYR-EL-------KSRK------- 332 (371)
T ss_dssp HT-------TCEEESSSS-----CCSSEEEEECH--H-----HHHHHHHSSSGGGHHHH-HH-------HHTT-------
T ss_pred Hc-------CcEEecCCC-----ccCceEEEECC--C-----HHHHHHHHHHCCEEEEe-cc-------cccc-------
Confidence 86 567765431 13678888875 1 23577888889998864 11 0010
Q ss_pred HHhhcCCccCCcccccCCCCceEEE-EeccCC-CCHHHHHHHHHHHHHHHh
Q psy16512 448 FHFQQGHICGDDKDIIDGKPTGSIR-ISYGHA-SNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 448 ~~~~~~~~c~~~~~~~~~~~~g~iR-vs~g~~-~t~edi~~lv~~L~~~~~ 496 (815)
.+|...+++| ++++.+ ++++++++++++|++++.
T Consensus 333 ---------------~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~ 368 (371)
T 2e7j_A 333 ---------------IHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIE 368 (371)
T ss_dssp ---------------EECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred ---------------ccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHH
Confidence 0011237899 999988 899999999999999764
No 29
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.95 E-value=3.2e-27 Score=262.38 Aligned_cols=352 Identities=11% Similarity=0.117 Sum_probs=248.6
Q ss_pred hhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhh
Q psy16512 64 YLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEY 143 (815)
Q Consensus 64 yLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~a 143 (815)
++...+....++.+.+++.+.+. . +........ ..++++++++++|.+.+ +.|++|+|+++|+.+++.+
T Consensus 25 ~~~~p~p~~~~~~v~~a~~~~~~----~--~~~~~~~~~----~~~l~~~la~~~~~~~~-~~v~~~~gg~~al~~~~~~ 93 (393)
T 3kgw_A 25 LLLGPGPSNLAPRVLAAGSLRMI----G--HMQKEMLQI----MEEIKQGIQYVFQTRNP-LTLVVSGSGHCAMETALFN 93 (393)
T ss_dssp EECSSSCCCCCHHHHHHTTCCCC----C--TTSHHHHHH----HHHHHHHHHHHHTCCCS-EEEEESCCTTTHHHHHHHH
T ss_pred eeccCCCCCCCHHHHHHhccccc----C--cccHHHHHH----HHHHHHHHHHHhCCCCC-cEEEEeCCcHHHHHHHHHh
Confidence 45555666677777776643221 1 111223344 78999999999998754 2599999999999999999
Q ss_pred hccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCC-CccEEEEecccCCCccc
Q psy16512 144 FEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRH-SNSLFVYPAESNFSGTK 217 (815)
Q Consensus 144 l~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~-~t~lv~i~~~~n~tG~~ 217 (815)
+. ++|| +++....|.+. .+...+...| .++++.++.++++.++++++ + ++++|++++++||||.+
T Consensus 94 ~~-~~gd~vl~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~-------~~~~~~v~~~~~~nptG~~ 164 (393)
T 3kgw_A 94 LL-EPGDSFLTGTNGIWGM-RAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLA-------QHKPVLLFLVHGESSTGVV 164 (393)
T ss_dssp HC-CTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHH-------HHCCSEEEEESEETTTTEE
T ss_pred cC-CCCCEEEEEeCCchhH-HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHh-------hCCCcEEEEeccCCcchhh
Confidence 96 8999 77776554321 2344444455 56666666678887777553 3 68999999999999999
Q ss_pred cChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCc
Q psy16512 218 YPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNK 297 (815)
Q Consensus 218 ~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~ 297 (815)
.|+++|.++|+ ++|+++|+|++++.|..++++..+++|++++|+||++++|.|+|++++++++++.+.+
T Consensus 165 ~~l~~i~~l~~-----------~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~ 233 (393)
T 3kgw_A 165 QPLDGFGELCH-----------RYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYS 233 (393)
T ss_dssp CCCTTHHHHHH-----------HTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHT
T ss_pred ccHHHHHHHHH-----------HcCCEEEEECCccccCcccchhhcCCCEEEecCcccccCCCceeEEEECHHHHHHHhc
Confidence 99999999999 8999999999999888888888888999999999988668899999999988766543
Q ss_pred ccccCceEEEEecCCcccccc-cCccccccCCCCChhHHHHHHHHHHHHHhhhh-h-HHHHHHHHHHHHHHHHhccccCC
Q psy16512 298 TFYGGGTVKISMANENFHIKK-DGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK-S-FTNAFELSQYTYFYFKQLSYSNG 374 (815)
Q Consensus 298 ~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~-~-~~~~~~l~~~l~~~L~~l~~~~~ 374 (815)
...++... ......+...+ .....++..++++...+.++.++++.+...+. . .++..++++++.+.|+++
T Consensus 234 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----- 306 (393)
T 3kgw_A 234 RKTKPVSF--YTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM----- 306 (393)
T ss_dssp CSSCCSCS--TTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred cCCCCCce--eecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-----
Confidence 22111100 00000000000 01123567789999999999999988766432 2 388999999999999987
Q ss_pred CCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC-CcEeccCccCCchhhhhhcCCCHHHHHHHhhcC
Q psy16512 375 QPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK-KIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQG 453 (815)
Q Consensus 375 ~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~-gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~ 453 (815)
+++++.+.. ....+.+++|.++.. .+..++.+.|.++ ||.+++|..+.
T Consensus 307 --g~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~~~---------------------- 355 (393)
T 3kgw_A 307 --GLKFFVKDP---EIRLPTITTVTVPAG----YNWRDIVSYVLDHFSIEISGGLGPT---------------------- 355 (393)
T ss_dssp --TCCBSSSSG---GGBCSSEEEEECCTT----BCHHHHHHHHHHHHCEECBCCCGGG----------------------
T ss_pred --CCeeccCCh---hhcCCeEEEEeCCCC----CCHHHHHHHHHHhCCEEEeCCcccC----------------------
Confidence 556553321 122346667776531 2334577777666 99999875311
Q ss_pred CccCCcccccCCCCceEEEEec-cCCCCHHHHHHHHHHHHHHHhh
Q psy16512 454 HICGDDKDIIDGKPTGSIRISY-GHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 454 ~~c~~~~~~~~~~~~g~iRvs~-g~~~t~edi~~lv~~L~~~~~~ 497 (815)
..+++|+++ ++..+++|+++++++|++++.+
T Consensus 356 -------------~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~ 387 (393)
T 3kgw_A 356 -------------EERVLRIGLLGYNATTENVDRVAEALREALQH 387 (393)
T ss_dssp -------------TTTEEEEECCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred -------------CCCEEEEEecccCCCHHHHHHHHHHHHHHHHh
Confidence 137899998 6556999999999999998754
No 30
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.95 E-value=2.5e-27 Score=261.93 Aligned_cols=343 Identities=9% Similarity=0.060 Sum_probs=240.0
Q ss_pred hhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhc
Q psy16512 66 DYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFE 145 (815)
Q Consensus 66 d~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~ 145 (815)
-+.+....++.+.+++.+.+. .+........ ++++++++++++|++.+...+++|+|+++|+.+++.++.
T Consensus 23 ~~pgp~~~~~~v~~a~~~~~~------~~~~~~~~~~----~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~ 92 (376)
T 3f0h_A 23 FTVGPVMSSEEVRAIGAEQVP------YFRTTEFSST----MLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF 92 (376)
T ss_dssp CSSSSCCCCHHHHHHHTSCCC------CCSSHHHHHH----HHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC
T ss_pred ecCCCCCCcHHHHHHhcCCCC------CCCCHHHHHH----HHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc
Confidence 344556677887777654331 1222233344 789999999999997543235558999999999999997
Q ss_pred cCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccCh
Q psy16512 146 FNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPL 220 (815)
Q Consensus 146 ~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l 220 (815)
++|| +|+....+.+. .+...+...| .++.+.+..++++.++++ +++++++|++++++||||.++|+
T Consensus 93 -~~gd~vi~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~-------~~~~~~~v~~~~~~nptG~~~~l 163 (376)
T 3f0h_A 93 -TKKDKVLVIDGGSFGH-RFVQLCEIHEIPYVALKLEHGKKLTKEKLYEY-------DNQNFTGLLVNVDETSTAVLYDT 163 (376)
T ss_dssp -CTTCCEEEEESSHHHH-HHHHHHHHTTCCEEEEECCTTCCCCHHHHHTT-------TTSCCCEEEEESEETTTTEECCH
T ss_pred -CCCCeEEEEeCChhhH-HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHh-------hccCceEEEEecccCCcceecCH
Confidence 8999 77776544442 2334444445 556665556777776653 34679999999999999999999
Q ss_pred HHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccc
Q psy16512 221 SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFY 300 (815)
Q Consensus 221 ~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~ 300 (815)
++|.++|+ ++|+++|+|++++.+..++++..+++|++++|+||++++|.|+|++++++++++.+.+...
T Consensus 164 ~~i~~l~~-----------~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~ 232 (376)
T 3f0h_A 164 MMIGEFCK-----------KNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKV 232 (376)
T ss_dssp HHHHHHHH-----------HTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCC
T ss_pred HHHHHHHH-----------HcCCEEEEEcCccccCccccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCC
Confidence 99999999 8999999999999988877776677999999999999978899999999988766543211
Q ss_pred cCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh--hhH-HHHHHHHHHHHHHHHhccccCCCCc
Q psy16512 301 GGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR--KSF-TNAFELSQYTYFYFKQLSYSNGQPL 377 (815)
Q Consensus 301 g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~--~~~-~~~~~l~~~l~~~L~~l~~~~~~p~ 377 (815)
.+.. .................+++...++++.++++.+...+ ..+ ++..++++++.+.|+++ +
T Consensus 233 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------~ 298 (376)
T 3f0h_A 233 RTMY-------FDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDL-------P 298 (376)
T ss_dssp CCST-------TCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS-------S
T ss_pred Ccee-------ecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-------C
Confidence 1100 00000000001112244667777788888888877652 222 88888999999999887 5
Q ss_pred EEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC-CcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCcc
Q psy16512 378 VELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK-KIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHIC 456 (815)
Q Consensus 378 ~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~-gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c 456 (815)
+++..+. ....++.+...+. +..++.+.|.++ ||.+++|.. .
T Consensus 299 ~~~~~~~------~~~~~~~~~~~~~-----~~~~l~~~l~~~~gi~v~~g~~----~---------------------- 341 (376)
T 3f0h_A 299 FELVSES------PANGVTSVHPTTA-----NAYDIFLKLKDEYGIWICPNGG----E---------------------- 341 (376)
T ss_dssp EEECCSS------BBTTEEEEEESSS-----CHHHHHHHHHHHSSEECEECCG----G----------------------
T ss_pred CccCccc------cCceEEEEeCCCC-----CHHHHHHHHHHhCCEEEecCcc----c----------------------
Confidence 7776542 2244555543222 234577777776 999987621 0
Q ss_pred CCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 457 GDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 457 ~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
...+++|+|++.++|++|+++++++|++++.+.
T Consensus 342 ---------~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~~ 374 (376)
T 3f0h_A 342 ---------MKDTIFRVGHIGALTHEDNTTLVNAFKDLQKRN 374 (376)
T ss_dssp ---------GTTTCEEEECCSSCCHHHHHHHHHHHHHHHHTT
T ss_pred ---------cCCCEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 013789999999999999999999999987643
No 31
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.95 E-value=5.2e-27 Score=258.25 Aligned_cols=336 Identities=13% Similarity=0.146 Sum_probs=233.5
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccC-------CCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSH-------PHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~n-------p~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
.+|+++++..++++.+.+++.+.+.+. .++ .++....... .+++++++++++|++++...+++|+|+|
T Consensus 4 ~~~l~~~~~~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~la~~~g~~~~~~~i~~t~g~t 78 (362)
T 2c0r_A 4 RAYNFNAGPAALPLEVLERAQAEFVDY-QHTGMSIMEMSHRGAVYEAV----HNEAQARLLALLGNPTGYKVLFIQGGAS 78 (362)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSS-TTSSSCGGGSCTTSHHHHHH----HHHHHHHHHHHTTCCSSEEEEEESSHHH
T ss_pred ceeeccCCCCCCCHHHHHHHHHHHhhh-hhcCccccccCCCcHHHHHH----HHHHHHHHHHHhCCCCCcEEEEECCCch
Confidence 578999999999999999998766432 111 1111223333 7899999999999975411257889999
Q ss_pred hhHHHHHhhhccCCCc-EEEecCCCcch--hhHHHHhhccc-eEEcCch--hh--hcchhhhhhhhhhhhhcCCCccEEE
Q psy16512 135 SAIKTVSEYFEFNEGS-FIYLTDNHTSV--LGMRELVKTNQ-IYSFSVD--DA--RNMLNEFKESQENVENMRHSNSLFV 206 (815)
Q Consensus 135 ~al~~~~~al~~~~gd-vv~~~~~h~s~--~~~~~~~~~~g-~v~~~~~--~~--~~~~~~~~~l~~~~~~~~~~t~lv~ 206 (815)
+|+.+++.++. ++|| +++....|.+. ....+..+ .. .++++.+ .. .+.+++. ++++|++|+
T Consensus 79 ~a~~~~~~~l~-~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~---------i~~~t~~v~ 147 (362)
T 2c0r_A 79 TQFAMIPMNFL-KEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ---------LQDNAAYLH 147 (362)
T ss_dssp HHHHHHHHHHC-CTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC---------CCTTEEEEE
T ss_pred HHHHHHHHhcC-CCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc---------cCCCcCEEE
Confidence 99999999998 8999 76665544332 12223333 33 5666531 11 2222221 246799999
Q ss_pred EecccCCCccc-cChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEE
Q psy16512 207 YPAESNFSGTK-YPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGAL 285 (815)
Q Consensus 207 i~~~~n~tG~~-~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l 285 (815)
+++++||||.. .|+++| +|+++++|++|+.+..++++..+ |++++|+||++| |+|+|++
T Consensus 148 ~~~~~n~tG~~~~~l~~i-----------------~~~~vivD~a~~~~~~~~~~~~~--d~~~~s~~K~~g-~~G~G~l 207 (362)
T 2c0r_A 148 LTSNETIEGAQFKAFPDT-----------------GSVPLIGDMSSDILSRPFDLNQF--GLVYAGAQKNLG-PSGVTVV 207 (362)
T ss_dssp EESEETTTTEECSSCCCC-----------------TTSCEEEECTTTTTSSCCCGGGC--SEEEEETTTTTC-CSSCEEE
T ss_pred EeCCcCccceeccccccc-----------------CCCEEEEEChhhccCCccchhHC--cEEEEecccccc-CcCcEEE
Confidence 99999999996 555554 37999999999999888776554 999999999998 8899999
Q ss_pred EEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh-h-hh-HHHHHHHHHHH
Q psy16512 286 IVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK-R-KS-FTNAFELSQYT 362 (815)
Q Consensus 286 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~-~-~~-~~~~~~l~~~l 362 (815)
++++++++.+.+.... . .++.. ........+|++...++++.++++.+... + .. .++.+++++++
T Consensus 208 ~~~~~~~~~l~~~~~~--~-------~~~~~---~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l 275 (362)
T 2c0r_A 208 IVREDLVAESPKHLPT--M-------LRYDT---YVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLI 275 (362)
T ss_dssp EEEGGGSSSCCTTSCG--G-------GCHHH---HHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred EEcHHHHhhccccCch--H-------HhHHH---HhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999887666432100 0 00000 00012345789999999999999987664 2 22 38999999999
Q ss_pred HHHHHhccccCCCCcE-EEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCC
Q psy16512 363 YFYFKQLSYSNGQPLV-ELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGL 441 (815)
Q Consensus 363 ~~~L~~l~~~~~~p~~-~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~ 441 (815)
.+.|+++ +++ +++.+.. ...+++++|.+++. .+..++.+.|.++||.+++|..+
T Consensus 276 ~~~L~~~------~~~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~L~~~gi~~~~g~~~----------- 330 (362)
T 2c0r_A 276 YDAIDQS------GGFYRGCVDVD----SRSDMNITFRLASE----ELEKEFVKASEQEGFVGLKGHRS----------- 330 (362)
T ss_dssp HHHHHTS------TTSSEESSCGG----GBCSSEEEEECSCH----HHHHHHHHHHHHTTEESCBCCTT-----------
T ss_pred HHHHHHc------CCccccCCChH----HcCCcEEEEEcCCc----chHHHHHHHHHHCCCeeccCCCC-----------
Confidence 9999987 324 6654321 12356778877531 12345788899999988765321
Q ss_pred CHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 442 SDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 442 ~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+.+|+|++.+++++|+++++++|++++.
T Consensus 331 --------------------------~~~iRis~~~~~~~e~i~~l~~~l~~~~~ 359 (362)
T 2c0r_A 331 --------------------------VGGLRASIYNAVPYESCEALVQFMEHFKR 359 (362)
T ss_dssp --------------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred --------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 15699999999999999999999998764
No 32
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.95 E-value=8.2e-27 Score=256.36 Aligned_cols=314 Identities=11% Similarity=0.065 Sum_probs=227.5
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEec-CCCcchhhHHHHhhccc----eEEcCchh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLT-DNHTSVLGMRELVKTNQ----IYSFSVDD 180 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~-~~h~s~~~~~~~~~~~g----~v~~~~~~ 180 (815)
++++++++++++|.+.+...+++|+|+++|+.+++.++. ++|| +++.. ..|++.+ ...+...| .++++.++
T Consensus 39 ~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~-~~gd~vi~~~~~~~~~~~--~~~~~~~g~~~~~v~~~~~~ 115 (366)
T 1m32_A 39 VEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSAL-GPQDKVLIVSNGAYGARM--VEMAGLMGIAHHAYDCGEVA 115 (366)
T ss_dssp HHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSC-CTTCCEEEEESSHHHHHH--HHHHHHHTCCEEEEECCTTS
T ss_pred HHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhc-CCCCeEEEEeCCCccHHH--HHHHHHhCCceEEEeCCCCC
Confidence 889999999999942221249999999999999999997 8888 66554 5666532 22233334 56666655
Q ss_pred hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCC
Q psy16512 181 ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDL 260 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl 260 (815)
..+++.++++++ + .+++++|++++++||||.++|+++|.++|+ ++|+++|+|++++.+..++++
T Consensus 116 ~~d~~~l~~~l~---~--~~~~~~v~~~~~~nptG~~~~l~~i~~l~~-----------~~~~~li~Dea~~~~~~~~~~ 179 (366)
T 1m32_A 116 RPDVQAIDAILN---A--DPTISHIAMVHSETTTGMLNPIDEVGALAH-----------RYGKTYIVDAMSSFGGIPMDI 179 (366)
T ss_dssp CCCHHHHHHHHH---H--CTTCCEEEEESEETTTTEECCHHHHHHHHH-----------HHTCEEEEECTTTTTTSCCCT
T ss_pred CCCHHHHHHHHh---c--CCCeEEEEEecccCCcceecCHHHHHHHHH-----------HcCCEEEEECCccccCcCccc
Confidence 577777776553 1 135889999999999999999999999999 899999999999988887777
Q ss_pred CCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCc--cccccCCCCChhHHHHH
Q psy16512 261 KQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGL--FEKFEDGTVNYLAIISL 338 (815)
Q Consensus 261 ~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~gt~~~~~~~al 338 (815)
..+++|++++|+||++++|.|+|++++++++++.+.+...+.. ......+... ......++++...++++
T Consensus 180 ~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 251 (366)
T 1m32_A 180 AALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLS--------LDLYAQWRCMEDNHGKWRFTSPTHTVLAF 251 (366)
T ss_dssp TTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCST--------TCHHHHHHHHHHTTTCCSSCCCHHHHHHH
T ss_pred cccCccEEEecCcccccCCCceEEEEECHHHHHhhcCCCCCcc--------ccHHHHHhhhcccCCCCCCCCCHHHHHHH
Confidence 7778999999999988658899999999988766643210000 0000000000 00122358888989899
Q ss_pred HHHHHHHHhhh--hhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHH
Q psy16512 339 KYGFDTMEKKR--KSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQN 415 (815)
Q Consensus 339 ~~al~~l~~~~--~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~ 415 (815)
.++++.+...+ ..+ ++.+++++++.+.|+++ +++++.+.. ...+.++++.++... ..+..++.+
T Consensus 252 ~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-------~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~ 318 (366)
T 1m32_A 252 AQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-------GFNTLLDDE----LHSPIITAFYSPEDP--QYRFSEFYR 318 (366)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-------TCCBSSCGG----GBCSSEEEEECCCCT--TCCHHHHHH
T ss_pred HHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC-------CCeeccCch----hcCceEEEEEcCccC--CCCHHHHHH
Confidence 89998876653 233 88899999999999886 455554321 122458888876310 123456888
Q ss_pred hhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 416 LANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 416 ~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.|.++||.+++|..|. .+++|++++.+++++|+++++++|++++
T Consensus 319 ~l~~~gi~v~~~~~~~------------------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 362 (366)
T 1m32_A 319 RLKEQGFVIYPGKVSQ------------------------------------SDCFRIGNIGEVYAADITALLTAIRTAM 362 (366)
T ss_dssp HHHHTTEECEECCCSS------------------------------------SCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred HHHHCCEEEECCcCCC------------------------------------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 8888899998876541 3789999999999999999999999876
Q ss_pred h
Q psy16512 496 L 496 (815)
Q Consensus 496 ~ 496 (815)
.
T Consensus 363 ~ 363 (366)
T 1m32_A 363 Y 363 (366)
T ss_dssp T
T ss_pred H
Confidence 4
No 33
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=4.7e-26 Score=253.08 Aligned_cols=329 Identities=15% Similarity=0.033 Sum_probs=237.3
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHh
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSE 142 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~ 142 (815)
.|+.+. .+.+++.+.+++.+.+.. .+.++......... .+++++++++++|+++++ |++|+|+++|+.+++.
T Consensus 33 ~~~~~~-~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~----~~~l~~~la~~~~~~~~~--i~~~~ggt~a~~~~~~ 104 (397)
T 3f9t_A 33 NIFGSM-CSNVLPITRKIVDIFLET-NLGDPGLFKGTKLL----EEKAVALLGSLLNNKDAY--GHIVSGGTEANLMALR 104 (397)
T ss_dssp CBCSCS-CCCCCTHHHHHHHHHTTC-CTTSGGGBHHHHHH----HHHHHHHHHHHTTCTTCE--EEEESCHHHHHHHHHH
T ss_pred CeEEEe-cCCCcHHHHHHHHHHHhh-cCCCcccChhHHHH----HHHHHHHHHHHhCCCCCC--EEEecCcHHHHHHHHH
Confidence 344544 344567778877766543 23444422233444 778999999999998876 9999999999999999
Q ss_pred hhccC------------CCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCC-CccEEEE
Q psy16512 143 YFEFN------------EGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRH-SNSLFVY 207 (815)
Q Consensus 143 al~~~------------~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~-~t~lv~i 207 (815)
++... +|| |+++...|+++.......+... .++.+.++.++++.++++++ + ++++|++
T Consensus 105 ~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-------~~~~~~v~~ 177 (397)
T 3f9t_A 105 CIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKEDYTIDEKFVKDAVE-------DYDVDGIIG 177 (397)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCTTSSBCHHHHHHHHH-------HSCCCEEEE
T ss_pred HHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCCCCcCCHHHHHHHHh-------hcCCeEEEE
Confidence 98622 378 8899999998776655543332 56666666678888777553 3 7899999
Q ss_pred ecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC--------------CCCCCCCCCcEEEEccc
Q psy16512 208 PAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN--------------MLDLKQHQPDFISISFY 273 (815)
Q Consensus 208 ~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~--------------~~dl~~~~~D~vv~S~~ 273 (815)
++++||||.+.|+++|.++|+ ++|+++|+|++++.+.. ++++.. ++|+++.|+|
T Consensus 178 ~~~~nptG~~~~l~~i~~l~~-----------~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~ 245 (397)
T 3f9t_A 178 IAGTTELGTIDNIEELSKIAK-----------ENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPH 245 (397)
T ss_dssp EBSCTTTCCBCCHHHHHHHHH-----------HHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTT
T ss_pred ECCCCCCCCCCCHHHHHHHHH-----------HhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccc
Confidence 999999999999999999999 89999999999875432 444445 7899999999
Q ss_pred cccccCCcceEEEEecccc-cccC---cccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh
Q psy16512 274 KMFGYPTGLGALIVKQKSA-HVLN---KTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR 349 (815)
Q Consensus 274 K~~g~p~G~G~l~~~~~~~-~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~ 349 (815)
|++++|.++|+++++++.+ +.+. +.+.++. .....++.+.....++.+++..+...+
T Consensus 246 K~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~a~~~~~~~~~ 306 (397)
T 3f9t_A 246 KMGHCPIPSGGILFKDIGYKRYLDVDAPYLTETR-------------------QATILGTRVGFGGACTYAVLRYLGREG 306 (397)
T ss_dssp TTTCCCSSCEEEEESSGGGGGGTCEECTTSSSSE-------------------ECSSCSSCCSHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCceEEEEeCHHHHHhhccCCccccCCC-------------------ccccccccccchHHHHHHHHHHHhHHH
Confidence 9997677899999987643 3331 1111111 112235555556666667777665433
Q ss_pred h-h-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccC
Q psy16512 350 K-S-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTG 427 (815)
Q Consensus 350 ~-~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g 427 (815)
. . .++..++++++.+.|+++ +++++.+. .++++.|.++. ..++.+.|.++||.++++
T Consensus 307 ~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~-------~~~~~~~~~~~-------~~~~~~~l~~~gi~v~~~ 365 (397)
T 3f9t_A 307 QRKIVNECMENTLYLYKKLKEN-------NFKPVIEP-------ILNIVAIEDED-------YKEVCKKLRDRGIYVSVC 365 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-------TCCBSSCC-------SSSEEEEECTT-------HHHHHHHHHHTTCBCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-------CCEEEcCC-------CccEEEEEeCC-------HHHHHHHHHhCCeEEecc
Confidence 2 2 278889999999999887 45555433 26777777643 235788888889998875
Q ss_pred ccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 428 CHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 428 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.. .+++|++++.+++++|+++++++|++++.
T Consensus 366 ~~--------------------------------------~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 366 NC--------------------------------------VKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp SS--------------------------------------SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred CC--------------------------------------CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 31 27899999999999999999999998764
No 34
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.94 E-value=1.3e-26 Score=256.79 Aligned_cols=312 Identities=12% Similarity=0.118 Sum_probs=221.0
Q ss_pred HHHHHHHHHhHcCCC----CCceeEEecCCchhhHHHHHhhhcc--CCCc-EEEecCCCcchhhHHHHhhccc----eEE
Q psy16512 107 IDQMRTKILQYFNTD----SDHYSVIFTSGATSAIKTVSEYFEF--NEGS-FIYLTDNHTSVLGMRELVKTNQ----IYS 175 (815)
Q Consensus 107 ~~~~r~~la~~~g~~----~~~~~iv~t~g~t~al~~~~~al~~--~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~ 175 (815)
..+++++++++++.. +++ |++|+|+|+|+.+++.++.. ++|| +++....+.... +...+...| .++
T Consensus 40 ~~~~~~~l~~~~~~~~~~~~~~--v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~-~~~~~~~~g~~~~~v~ 116 (385)
T 2bkw_A 40 FQRVLKNTRAVFKSAAASKSQP--FVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDR-FADCLRSYGAQVDVVR 116 (385)
T ss_dssp HHHHHHHHHHHTTCCGGGTCEE--EEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHH-HHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHhCCCCCCCCce--EEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHH-HHHHHHHcCCceEEEe
Confidence 667888888888764 344 99999999999999999852 6788 666644322211 123334445 455
Q ss_pred c-CchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCC--CeEEEEecccc
Q psy16512 176 F-SVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRS--NCFVLLDAATY 252 (815)
Q Consensus 176 ~-~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~--gi~vivD~a~~ 252 (815)
+ +.++.++++.++++++ ..++++|++++++||||.++|+++|.++|+ ++ |+++|+|++++
T Consensus 117 ~~~~~~~~d~~~l~~~l~------~~~~~~v~~~~~~nptG~~~~l~~i~~~~~-----------~~~~~~~li~D~a~~ 179 (385)
T 2bkw_A 117 PLKIGESVPLELITEKLS------QNSYGAVTVTHVDTSTAVLSDLKAISQAIK-----------QTSPETFFVVDAVCS 179 (385)
T ss_dssp CSSTTSCCCHHHHHHHHH------HSCCSEEEEESEETTTTEECCHHHHHHHHH-----------HHCTTSEEEEECTTT
T ss_pred cCCCCCCCCHHHHHHHHh------cCCCCEEEEEccCCCcCeEcCHHHHHHHHH-----------hhCCCCEEEEECccc
Confidence 5 5455567777776553 126899999999999999999999999999 78 99999999999
Q ss_pred cCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccccc-ccCc------ccccCceEEEEecCCcccccccCc--cc
Q psy16512 253 CGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAH-VLNK------TFYGGGTVKISMANENFHIKKDGL--FE 323 (815)
Q Consensus 253 ~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~-~l~~------~~~g~~~~~~~~~~~~~~~~~~~~--~~ 323 (815)
.+..++++..+++|++++|+||++++|+|+|+++++++.++ .+++ ..+++.. ..+....... ..
T Consensus 180 ~~~~~~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 252 (385)
T 2bkw_A 180 IGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSL-------RRWTPIMENYEAGK 252 (385)
T ss_dssp TTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCH-------HHHHHHHHHHHTTC
T ss_pred cCCccccccccCceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCCCCCceeecH-------HHHhhHHHhhhccC
Confidence 88887788777899999999998776889999999988765 5531 1111100 0000000000 01
Q ss_pred cccCCCCChhHHHHHHHHHHHHHhhhh-h-HHHHHHHHHHHHHHH-HhccccCCCCcEEEcCCCCCCCCC-cccceEEEE
Q psy16512 324 KFEDGTVNYLAIISLKYGFDTMEKKRK-S-FTNAFELSQYTYFYF-KQLSYSNGQPLVELYHDTDYGESK-YQGNIVNFN 399 (815)
Q Consensus 324 ~~~~gt~~~~~~~al~~al~~l~~~~~-~-~~~~~~l~~~l~~~L-~~l~~~~~~p~~~l~~~~~~~~~~-~~~~i~~f~ 399 (815)
....++++..+++++.++++.+...+. . .++.+++++++.+.| +++ +++++.+.. .. ..+++++|.
T Consensus 253 ~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-------g~~~~~~~~---~~~~~~~~~~~~ 322 (385)
T 2bkw_A 253 GAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL-------QLTSVSRYP---SNMSAHGLTAVY 322 (385)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT-------CCEESSCSS---STTBCSSCEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc-------CceecccCc---ccccCCceEEEe
Confidence 122468899999999899988765432 2 388899999999999 776 567765321 01 247888888
Q ss_pred EecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEe-ccC-
Q psy16512 400 LLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRIS-YGH- 477 (815)
Q Consensus 400 ~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs-~g~- 477 (815)
+++ ..++.+.|.++||.+++|..+.. ..+++|+| ++.
T Consensus 323 ~~~-------~~~~~~~l~~~gi~v~~g~~~~~----------------------------------~~~~iRis~~~~~ 361 (385)
T 2bkw_A 323 VAD-------PPDVIAFLKSHGVVIAGGIHKDI----------------------------------GPKYIRIGHMGVT 361 (385)
T ss_dssp CSC-------HHHHHHHHHHTTEECBCCCCTTT----------------------------------GGGEEEECCCGGG
T ss_pred cCC-------HHHHHHHHHHCCeEEeCCCCccc----------------------------------CCCEEEEEccccc
Confidence 753 23577888889999998754211 13789999 763
Q ss_pred --CCCHHHHHHHHHHHHHHHh
Q psy16512 478 --ASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 478 --~~t~edi~~lv~~L~~~~~ 496 (815)
.++++|+++++++|++++.
T Consensus 362 ~~~~~~e~i~~~~~~l~~~~~ 382 (385)
T 2bkw_A 362 ACNKNLPYMKNCFDLIKLALQ 382 (385)
T ss_dssp TSSTTCTHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHHH
Confidence 4799999999999998764
No 35
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.94 E-value=2.8e-25 Score=244.84 Aligned_cols=322 Identities=11% Similarity=0.085 Sum_probs=230.5
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhh-ccccCCCChhhhhhhhhhhHHHHHHHHHhHcCC-CCCceeEEecCCchhhHH
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKE-NIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNT-DSDHYSVIFTSGATSAIK 138 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~-~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~-~~~~~~iv~t~g~t~al~ 138 (815)
.++|+.+... ..++.+.+++.+.+.. .....+. .. ..++|+++++++|+ ++++ |++|+|+|+|+.
T Consensus 32 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~----~~~l~~~la~~~g~~~~~~--i~~~~g~t~a~~ 99 (367)
T 3euc_A 32 LVKLDAMENPYRLPPALRSELAARLGEVALNRYPV------PS----SEALRAKLKEVMQVPAGME--VLLGNGSDEIIS 99 (367)
T ss_dssp CEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCC------CC----HHHHHHHHHHHHTCCTTCE--EEEEEHHHHHHH
T ss_pred eeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC------Cc----HHHHHHHHHHHhCCCCcce--EEEcCCHHHHHH
Confidence 4555554443 3567788887776653 1122222 12 78899999999999 5555 999999999999
Q ss_pred HHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCC-CccEEEEecccCCCc
Q psy16512 139 TVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRH-SNSLFVYPAESNFSG 215 (815)
Q Consensus 139 ~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~-~t~lv~i~~~~n~tG 215 (815)
+++.++. ++|| |++....|+++....+..+... .++++.+..++++.++++++ + ++++|++++++||||
T Consensus 100 ~~~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~-------~~~~~~v~~~~~~nptG 171 (367)
T 3euc_A 100 MLALAAA-RPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRADFTLDRGAMLAAMA-------EHQPAIVYLAYPNNPTG 171 (367)
T ss_dssp HHHHHTC-CTTCEEEEEESCSCCSCHHHHTTTCEEEEEECCTTSCCCHHHHHHHHH-------HHCCSEEEEESSCTTTC
T ss_pred HHHHHHc-CCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHHHhh-------ccCCCEEEEcCCCCCCC
Confidence 9999997 8999 8888888887765544433222 66777666678888777553 3 689999999999999
Q ss_pred cccChHHHHHHhhccccccccccCCC--CeEEEEecccccCCC--C-CCCCCCCCcEEEEccccccccCCc--ceEEEEe
Q psy16512 216 TKYPLSWCNTVHRNHVFKKHFKCSRS--NCFVLLDAATYCGSN--M-LDLKQHQPDFISISFYKMFGYPTG--LGALIVK 288 (815)
Q Consensus 216 ~~~~l~~I~~l~~~~~~~~~~~~~~~--gi~vivD~a~~~g~~--~-~dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~~ 288 (815)
.++|.+++.++++ .|+++ |+++|+|++++.... . ..+...+.++++.|+||+ + ++| +|+++++
T Consensus 172 ~~~~~~~l~~i~~--------~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~-~~G~r~G~~~~~ 241 (367)
T 3euc_A 172 NLFDAADMEAIVR--------AAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKL-G-LAGIRLGYVAGD 241 (367)
T ss_dssp CCCCHHHHHHHHH--------HTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCT-T-SCSCCEEEEEEC
T ss_pred CCCCHHHHHHHHH--------hhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhh-c-ccccCceeeeeC
Confidence 9998777766655 34489 999999999764221 1 122334566889999999 6 445 7999998
Q ss_pred cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q psy16512 289 QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQ 368 (815)
Q Consensus 289 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~ 368 (815)
+++++.+.... ..++.+..+..++.++++.........++..++++++.+.|++
T Consensus 242 ~~~~~~~~~~~--------------------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 295 (367)
T 3euc_A 242 PQWLEQLDKVR--------------------------PPYNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAA 295 (367)
T ss_dssp HHHHHHHGGGC--------------------------CSSCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC--------------------------CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 87766553221 1235677777777777766222222338888999999999988
Q ss_pred ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHH
Q psy16512 369 LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKF 448 (815)
Q Consensus 369 l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~ 448 (815)
+ |+++++.+. ++++++.++ +..++.+.|.++||.+++|..|...
T Consensus 296 ~------~g~~~~~~~--------~~~~~~~~~-------~~~~l~~~l~~~gi~v~~~~~~~~~--------------- 339 (367)
T 3euc_A 296 H------GGVTVFPSA--------ANFLLARVP-------DAAQTFDRLLARKVLIKNVSKMHPL--------------- 339 (367)
T ss_dssp S------TTCEECCCS--------SSEEEEECS-------CHHHHHHHHHTTTEECEECGGGCGG---------------
T ss_pred C------CCcEECCCC--------CeEEEEECC-------CHHHHHHHHHHCCeEEEECCccCCC---------------
Confidence 7 678765332 667777765 2345888899999999988765421
Q ss_pred HhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 449 HFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 449 ~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
..+++|+|++ +++|+++++++|++++.
T Consensus 340 ------------------~~~~iRis~~---~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 340 ------------------LANCLRVTVS---TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp ------------------GTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred ------------------CCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence 1379999987 89999999999998763
No 36
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.94 E-value=1.1e-26 Score=257.53 Aligned_cols=316 Identities=9% Similarity=0.076 Sum_probs=222.4
Q ss_pred hHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc------eEEcCc
Q psy16512 106 EIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ------IYSFSV 178 (815)
Q Consensus 106 ~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g------~v~~~~ 178 (815)
.++++++.+++++|++ + .++||+|+|+|+++++..+ .+|| +|+....|++. .+...+...| .++.+.
T Consensus 36 ~~~~~~~~l~~~~~~~-~--~v~~~~sgt~a~~~~~~~~--~~gd~vi~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~ 109 (379)
T 3ke3_A 36 VMNDLLSNLKTVYNAE-A--AVIIPGSGTYGMEAVARQL--TIDEDCLIIRNGWFSY-RWTQILEKGKFAKSSTVLTAER 109 (379)
T ss_dssp HHHHHHHHHHHHHTCS-E--EEEEESCHHHHHHHHHHHH--CTTCEEEEEECSHHHH-HHHHHHHHHCCSSEEEEEECEE
T ss_pred HHHHHHHHHHHHhCCC-C--EEEEcCChhHHHHHHHHhC--CCCCeEEEEeCCchhH-HHHHHHHHhCCCCceEEEeccc
Confidence 3899999999999987 3 4999999999999988655 6888 88888777653 2333333222 344432
Q ss_pred h---------hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC---hHHHHHHhhccccccccccCCCCeEEE
Q psy16512 179 D---------DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVL 246 (815)
Q Consensus 179 ~---------~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vi 246 (815)
. +..+++.++++++ .+++++|++++++|+||.+.| +++|.++|+ ++|+++|
T Consensus 110 ~g~~~~~~~~~~~d~~~l~~~i~------~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~-----------~~~~~li 172 (379)
T 3ke3_A 110 TEDTEAPKPFAPVDIETAVAKIK------EDKSAIVYAPHVETSSGIILSEEYIKALSEAVH-----------SVGGLLV 172 (379)
T ss_dssp SSCCSSCCCEECCCHHHHHHHHH------HHTCSEEEEESEETTTTEECCHHHHHHHHHHHH-----------HTTCEEE
T ss_pred cccccccCCCCCCCHHHHHHHHh------hcCCcEEEEEeecCCCceeCCHHHHHHHHHHHH-----------HcCCEEE
Confidence 1 1356666665442 136899999999999999999 889999998 8999999
Q ss_pred EecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccc---cccCccc
Q psy16512 247 LDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHI---KKDGLFE 323 (815)
Q Consensus 247 vD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~---~~~~~~~ 323 (815)
+|++++ |..++++..+++|++++|+||++++|.|+|++++++++++.+.+....... .....|.. ..... .
T Consensus 173 ~D~~~~-g~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~g-~ 246 (379)
T 3ke3_A 173 IDCIAS-GCVWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFS----LDLKQWLTIMRAYENG-G 246 (379)
T ss_dssp EECTTC-TTCCCCHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCST----TCHHHHHHHHHHHHTT-S
T ss_pred EEeccc-CCccccccccCCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCcee----ecHHHHHHHHHhhhcc-C
Confidence 999999 888888777789999999999998898999999999887665432100000 00000000 00000 0
Q ss_pred cccCCCCChhHHHHHHHHHHHHHhhhh-hH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEe
Q psy16512 324 KFEDGTVNYLAIISLKYGFDTMEKKRK-SF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLL 401 (815)
Q Consensus 324 ~~~~gt~~~~~~~al~~al~~l~~~~~-~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~ 401 (815)
+...+|+|...++++.++++.+...+. .+ ++.+++++++++.|+++ +++++.+.. ...+.++.+...
T Consensus 247 ~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-------g~~~~~~~~----~~~~~i~~~~~~ 315 (379)
T 3ke3_A 247 HAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDK-------GIESVAAEG----FEAPGVVVSYTE 315 (379)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-------TCCBSBCTT----CBCSSEEEEECS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-------CCEecCCcc----ccCceEEEEccC
Confidence 112358999999999999999887642 22 88899999999999987 666665432 122334444432
Q ss_pred cCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCH
Q psy16512 402 HKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNW 481 (815)
Q Consensus 402 ~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ 481 (815)
+. . ....+.|.++||.+++|..|..+.. ...+.+|+|++.++|+
T Consensus 316 ~~---~---~~~~~~L~~~Gi~v~~g~~~~~~~~------------------------------~~~~~lRis~~~~~t~ 359 (379)
T 3ke3_A 316 RD---D---MHKGSAFAEAGLQIAAGVPLKVGEP------------------------------DNFKTFRLGLFGLDKL 359 (379)
T ss_dssp CH---H---HHSSHHHHHTTCCCEECCCCSSCCC------------------------------TTCCEEEEECCSHHHH
T ss_pred Cc---c---hHHHHHHHHCCeEEeCCcccccccc------------------------------CcCCEEEEeCCcCCCH
Confidence 21 1 0124677889999998876542110 1137899999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy16512 482 DDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 482 edi~~lv~~L~~~~~~ 497 (815)
+||++++++|++++.+
T Consensus 360 ~di~~~~~~l~~~l~~ 375 (379)
T 3ke3_A 360 TDIDGTVERFEKALDE 375 (379)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987643
No 37
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.94 E-value=3.3e-25 Score=242.86 Aligned_cols=321 Identities=11% Similarity=0.076 Sum_probs=230.1
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHH
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTV 140 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~ 140 (815)
.+.|+.+... ..++.+.+++.+.+.. ...+|. .. ..++|+++++++|+++++ |++|+|+++|+.++
T Consensus 18 ~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~y~~------~~----~~~l~~~la~~~~~~~~~--i~~~~g~~~a~~~~ 84 (354)
T 3ly1_A 18 PIRINFNENPLGMSPKAQAAARDAVVK-ANRYAK------NE----ILMLGNKLAAHHQVEAPS--ILLTAGSSEGIRAA 84 (354)
T ss_dssp CEECSSCCCSSCCCHHHHHHHHHTGGG-TTSCCH------HH----HHHHHHHHHHHTTSCGGG--EEEESHHHHHHHHH
T ss_pred eEEccCCCCCCCCCHHHHHHHHHHHhh-CcCCCC------Cc----hHHHHHHHHHHhCCChHH--EEEeCChHHHHHHH
Confidence 3445544433 3567777777665542 222221 23 789999999999998887 99999999999999
Q ss_pred HhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcccc
Q psy16512 141 SEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKY 218 (815)
Q Consensus 141 ~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~ 218 (815)
+.++. ++|| |++....|+++....+..+... .++.+.+..++++.++++++ ..+++++|++++++||||.++
T Consensus 85 ~~~l~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~-----~~~~~~~v~l~~p~nptG~~~ 158 (354)
T 3ly1_A 85 IEAYA-SLEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVA-----AYSGPSIVYLVNPNNPTGTIT 158 (354)
T ss_dssp HHHHC-CTTCEEEEESSSCTHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHHH-----TCSSCEEEEEESSCTTTCCCC
T ss_pred HHHHh-CCCCeEEECCCCchHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhc-----cCCCCCEEEEeCCCCCcCCCc
Confidence 99997 8998 8888888877655444332222 55566556677777776443 015799999999999999999
Q ss_pred ChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCC---CC----CCC-CCcEEEEccccccccCCc--ceEEEEe
Q psy16512 219 PLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNML---DL----KQH-QPDFISISFYKMFGYPTG--LGALIVK 288 (815)
Q Consensus 219 ~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~---dl----~~~-~~D~vv~S~~K~~g~p~G--~G~l~~~ 288 (815)
|.+++.++++ .| ++|+++|+|++++.....- .. ... +.++++.|+||+|| ++| +|+++++
T Consensus 159 ~~~~l~~l~~--------~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~ 228 (354)
T 3ly1_A 159 PADVIEPWIA--------SK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHA-MAGMRVGYAVAH 228 (354)
T ss_dssp CHHHHHHHHH--------TC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTC-CGGGCCEEEECC
T ss_pred CHHHHHHHHH--------hC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhcc-ChhhhheeeecC
Confidence 9999999999 34 5999999999987433211 11 122 55689999999998 445 7999998
Q ss_pred cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q psy16512 289 QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQ 368 (815)
Q Consensus 289 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~ 368 (815)
+++++.+.... ..++++.....++.++++.........++..++++++.+.|++
T Consensus 229 ~~~~~~~~~~~--------------------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 282 (354)
T 3ly1_A 229 PTVIALMGRYV--------------------------AGEKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALED 282 (354)
T ss_dssp HHHHHHHGGGT--------------------------TCSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--------------------------CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87766553221 1246777888887777765432322337888899999999987
Q ss_pred ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHH
Q psy16512 369 LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKF 448 (815)
Q Consensus 369 l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~ 448 (815)
+ ++.++.+ .++++++.++. +..++.+.|.++||.++ |.+|..
T Consensus 283 ~-------~~~~~~~--------~~~~~~~~~~~------~~~~~~~~l~~~gi~v~-g~~~~~---------------- 324 (354)
T 3ly1_A 283 L-------KLPYLPS--------EGNFVFHQLVV------PLKDYQTHMADAGVLIG-RAFPPA---------------- 324 (354)
T ss_dssp H-------TCCBCCC--------CSSEEEEECSS------CHHHHHHHHHHTTEECC-CCCTTC----------------
T ss_pred C-------CCeECCC--------CceEEEEECCC------CHHHHHHHHHHCCEEEe-ecCCCC----------------
Confidence 6 4554422 26777777764 23457888888999998 765420
Q ss_pred HhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 449 HFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 449 ~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+++|+|++ +++|+++++++|++++..
T Consensus 325 -------------------~~~iRis~~---~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 325 -------------------DNWCRISLG---TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp -------------------TTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred -------------------CCEEEEEcC---CHHHHHHHHHHHHHHHHh
Confidence 378999987 899999999999998754
No 38
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.94 E-value=8.8e-26 Score=247.98 Aligned_cols=335 Identities=13% Similarity=0.122 Sum_probs=233.2
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCCh--------hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc-
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGN--------SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA- 133 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~--------~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~- 133 (815)
+|+++.+..++|+.+.+++.+.+... .|++.. ...... ++++++++++++|++. .++|++|+|+
T Consensus 4 ~~~~~~g~~~~p~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~l~~~la~~~g~~~-~~~v~~~~g~g 76 (360)
T 1w23_A 4 VFNFNAGPSALPKPALERAQKELLNF--NDTQMSVMELSHRSQSYEEV----HEQAQNLLRELLQIPN-DYQILFLQGGA 76 (360)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSS--TTSSSCGGGSCTTSHHHHHH----HHHHHHHHHHHHTCCT-TEEEEEESSHH
T ss_pred eEeecCCCcCCCHHHHHHHHHHhhhh--ccccccccccCCCCHHHHHH----HHHHHHHHHHHhCCCC-CceEEEECCcc
Confidence 57777888888899999887765431 233321 222333 8899999999999962 2349999999
Q ss_pred hhhHHHHHhhhccCC---Cc-EEEecCCCcchhhHHHHhhccc-eEEcCc-hhhhcchhhhh-hhhhhhhhcCCCccEEE
Q psy16512 134 TSAIKTVSEYFEFNE---GS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV-DDARNMLNEFK-ESQENVENMRHSNSLFV 206 (815)
Q Consensus 134 t~al~~~~~al~~~~---gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~-~~~~~~~~~~~-~l~~~~~~~~~~t~lv~ 206 (815)
|+|+.+++.++. .+ |+ ++++..+|++.. .....+ .. .+++++ ++..+++++++ ++ +++|++|+
T Consensus 77 t~al~~~~~~l~-~~~~~g~~vi~~~~~~~~~~-~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i-------~~~~k~v~ 146 (360)
T 1w23_A 77 SLQFTMLPMNLL-TKGTIGNYVLTGSWSEKALK-EAKLLG-ETHIAASTKANSYQSIPDFSEFQL-------NENDAYLH 146 (360)
T ss_dssp HHHHHHHHHHHC-CTTCEEEEEECSHHHHHHHH-HHHTTS-EEEEEEECGGGTSCSCCCGGGCCC-------CTTEEEEE
T ss_pred hHHHHHHHHHhc-CCCCcccEEEecchhHHHHH-HHHHhC-CeEEeecccccCcCCccchHhhcc-------CCCCCEEE
Confidence 999999999987 44 55 455555555422 222222 22 566664 33456666654 33 46799999
Q ss_pred EecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEE
Q psy16512 207 YPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALI 286 (815)
Q Consensus 207 i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~ 286 (815)
+++++||||.++| ++++ ++|+++|+|++|+.+..++++..+ |++++|+||+|| |+|+|+++
T Consensus 147 ~~~~~nptG~~~~-----~i~~-----------~~~~~li~D~a~~~~~~~~~~~~~--di~~~s~sK~~~-~~G~G~~~ 207 (360)
T 1w23_A 147 ITSNNTIYGTQYQ-----NFPE-----------INHAPLIADMSSDILSRPLKVNQF--GMIYAGAQKNLG-PSGVTVVI 207 (360)
T ss_dssp EESEETTTTEECS-----SCCC-----------CCSSCEEEECTTTTTSSCCCGGGC--SEEEEETTTTTS-CTTCEEEE
T ss_pred EeCCCCCcceecc-----cccc-----------cCCceEEEechhhcCCCCcCcccC--CEEEEEcccccC-CCCcEEEE
Confidence 9999999999987 4455 689999999999998877766544 899999999999 88999999
Q ss_pred EecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh-h-hh-HHHHHHHHHHHH
Q psy16512 287 VKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK-R-KS-FTNAFELSQYTY 363 (815)
Q Consensus 287 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~-~-~~-~~~~~~l~~~l~ 363 (815)
++++.++.+.+.. ++.. .+.. . ...++..++++...++++.++++.+... + .. .++.+++++++.
T Consensus 208 ~~~~~~~~~~~~~-~~~~--------~~~~-~--~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~ 275 (360)
T 1w23_A 208 VKKDLLNTKVEQV-PTML--------QYAT-H--IKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIY 275 (360)
T ss_dssp EEHHHHCSCCTTC-CGGG--------CHHH-H--HHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred EcHHHHhhcccCC-cchh--------hhhh-h--hhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 9998876665432 1110 0000 0 0023556789999999999999887654 2 22 388899999999
Q ss_pred HHHHhccccCCCCcE-EEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCC
Q psy16512 364 FYFKQLSYSNGQPLV-ELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLS 442 (815)
Q Consensus 364 ~~L~~l~~~~~~p~~-~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~ 442 (815)
+.|+++ +++ ..+.+.. ...+.+++|.+++. .+..++.+.|.++||.+++|..+
T Consensus 276 ~~L~~~------~~~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~~~~~~~~------------ 329 (360)
T 1w23_A 276 DTIDES------NGFYVGHAEKG----SRSLMNVTFNLRNE----ELNQQFLAKAKEQGFVGLNGHRS------------ 329 (360)
T ss_dssp HHHHTT------TTSSEESSCGG----GBCSSEEEEECSSH----HHHHHHHHHHHHTTEESCBCCTT------------
T ss_pred HHHHHc------cCcccccCCch----hccCcEEEEEcCCC----ccHHHHHHHHHHCCeeeecCCCC------------
Confidence 999887 443 4331110 11234888877531 11234677788899998765320
Q ss_pred HHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 443 DITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 443 ~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+++|+|++.+++++++++++++|++++.
T Consensus 330 -------------------------~~~iRis~~~~~~~~~i~~~~~~l~~~~~ 358 (360)
T 1w23_A 330 -------------------------VGGCRASIYNAVPIDACIALRELMIQFKE 358 (360)
T ss_dssp -------------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred -------------------------CCeEEEEecCCCCHHHHHHHHHHHHHHHh
Confidence 26899999999999999999999998764
No 39
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.94 E-value=4.4e-25 Score=242.90 Aligned_cols=320 Identities=14% Similarity=0.138 Sum_probs=228.9
Q ss_pred hhhhhhhhcccc-cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHH
Q psy16512 61 DICYLDYTGAGV-YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 61 ~~iyLd~a~~~~-~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~ 139 (815)
..++|+.+.... .++.+.+++.+.+. ....+|+ .. ..++|+++++++|+++++ |++|+|+++|+.+
T Consensus 33 ~~i~l~~~~~~~~~~~~v~~a~~~~~~-~~~~y~~------~~----~~~lr~~la~~~~~~~~~--v~~~~g~t~a~~~ 99 (363)
T 3ffh_A 33 KITKLSSNENPLGTSKKVAAIQANSSV-ETEIYPD------GW----ASSLRKEVADFYQLEEEE--LIFTAGVDELIEL 99 (363)
T ss_dssp CCEECSSCSCTTCCCHHHHHHHHTCBS-CCCBC--------------CHHHHHHHHHHHTCCGGG--EEEESSHHHHHHH
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHHHH-HhhcCCC------cc----hHHHHHHHHHHhCCChhh--EEEeCCHHHHHHH
Confidence 345566554443 45667776655332 1222222 22 688999999999998887 9999999999999
Q ss_pred HHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccc
Q psy16512 140 VSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTK 217 (815)
Q Consensus 140 ~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~ 217 (815)
++.++. ++|| |+++...|+++....+..+... .++.++++.++++.+++++ ++++++|++++++||||.+
T Consensus 100 ~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i-------~~~~~~v~~~~p~nptG~~ 171 (363)
T 3ffh_A 100 LTRVLL-DTTTNTVMATPTFVQYRQNALIEGAEVREIPLLQDGEHDLEGMLNAI-------DEKTTIVWICNPNNPTGNY 171 (363)
T ss_dssp HHHHHC-STTCEEEEEESSCHHHHHHHHHHTCEEEEEECCTTSCCCHHHHHHHC-------CTTEEEEEEESSCTTTCCC
T ss_pred HHHHHc-cCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCCCCCcCHHHHHHhc-------ccCCCEEEEeCCCCCcCCC
Confidence 999997 8898 8888888877655544443332 6677766667777776644 4679999999999999999
Q ss_pred cChHHHHHHhhccccccccccCCCCeEEEEecccccCCC---C--CCC-CCCCCcEEEEccccccccCCcc--eEEEEec
Q psy16512 218 YPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN---M--LDL-KQHQPDFISISFYKMFGYPTGL--GALIVKQ 289 (815)
Q Consensus 218 ~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~---~--~dl-~~~~~D~vv~S~~K~~g~p~G~--G~l~~~~ 289 (815)
+|++++.++++ .|++ |+++|+|++++.... . ... ...+.++++.|++|++| ++|+ |++++++
T Consensus 172 ~~~~~l~~l~~--------~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~ 241 (363)
T 3ffh_A 172 IELADIQAFLD--------RVPS-DVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYG-LASARVGYGIADK 241 (363)
T ss_dssp CCHHHHHHHHT--------TSCT-TSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTC-CSSCCCEEEEECH
T ss_pred cCHHHHHHHHH--------hCCC-CcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeechhhhc-CchhceeeeecCH
Confidence 99999999998 2334 999999999873221 1 111 12234578889999998 6675 9999988
Q ss_pred ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q psy16512 290 KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQL 369 (815)
Q Consensus 290 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l 369 (815)
++++.+.+.. ..++.+..+..++.++++.........++..++++++.+.|+++
T Consensus 242 ~~~~~l~~~~--------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 295 (363)
T 3ffh_A 242 EIIRQLNIVR--------------------------PPFNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRF 295 (363)
T ss_dssp HHHHHHHHTC--------------------------CSCCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC--------------------------CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 8776553221 13467778888877777643222222378888999999999985
Q ss_pred cccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHH
Q psy16512 370 SYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFH 449 (815)
Q Consensus 370 ~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~ 449 (815)
++++++.+. ++++++.++. +..++.+.|.++||.+++|..+..
T Consensus 296 ------~g~~~~~~~--------~~~~~~~~~~------~~~~~~~~l~~~gi~v~~g~~~~~----------------- 338 (363)
T 3ffh_A 296 ------EKVKLYPAN--------GNFVLIDLGI------EAGTIFSYLEKNGYITRSGAALGF----------------- 338 (363)
T ss_dssp ------TTCEECCCC--------SSEEEEECSS------CHHHHHHHHHHTTEECEETTTTTC-----------------
T ss_pred ------CCceECCCC--------CeEEEEECCC------CHHHHHHHHHHCCeEEEeCccCCC-----------------
Confidence 477776432 5777777753 234588888889999998765321
Q ss_pred hhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 450 FQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 450 ~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.+++|+|++ +++|+++++++|++++
T Consensus 339 ------------------~~~iRis~~---~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 339 ------------------PTAVRITIG---KEEDNSAVIALLEKLL 363 (363)
T ss_dssp ------------------TTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred ------------------CCeEEEECC---CHHHHHHHHHHHHHhC
Confidence 378999998 8999999999998753
No 40
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.94 E-value=1e-24 Score=250.23 Aligned_cols=340 Identities=11% Similarity=0.031 Sum_probs=237.7
Q ss_pred cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCC--CCc-eeEEecCCchhhHHHHHhhhccC
Q psy16512 71 GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTD--SDH-YSVIFTSGATSAIKTVSEYFEFN 147 (815)
Q Consensus 71 ~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~--~~~-~~iv~t~g~t~al~~~~~al~~~ 147 (815)
+.+++.+.+++.+.+.. .+.+++.......+ .+++++++++++|++ +++ ...++|+|+|+|+.+++.++...
T Consensus 66 ~~~~~~v~~~l~~~~~~-~~~~~~~~p~~~~l----e~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~ 140 (502)
T 3hbx_A 66 TWMEPECDKLIMSSINK-NYVDMDEYPVTTEL----QNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRK 140 (502)
T ss_dssp CCCCHHHHHHHHHTTTC-BTTCTTTCHHHHHH----HHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcc-CCCChhcChhHHHH----HHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHH
Confidence 55667777777665443 33445443444444 678999999999998 443 12356999999999998887521
Q ss_pred -------CC------cEEEecCCCcchhhHHHHhhccc-eEEcCch-hhhcchhhhhhhhhhhhhcCCCccEEEEecccC
Q psy16512 148 -------EG------SFIYLTDNHTSVLGMRELVKTNQ-IYSFSVD-DARNMLNEFKESQENVENMRHSNSLFVYPAESN 212 (815)
Q Consensus 148 -------~g------dvv~~~~~h~s~~~~~~~~~~~g-~v~~~~~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n 212 (815)
+| .+|++..+|+++.......+... .++++++ +.++++.+++++ +++|++|++++++|
T Consensus 141 ~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i-------~~~t~~v~~~~~~n 213 (502)
T 3hbx_A 141 WQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMV-------DENTICVAAILGST 213 (502)
T ss_dssp HHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCBTTBCSCCHHHHHHHC-------CTTEEEEEEEBSCT
T ss_pred HhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecCCCcCcCCHHHHHHHH-------hhCCEEEEEecCCC
Confidence 14 38888889988766555443222 5566554 566777776644 46799999999999
Q ss_pred CCccccChHHHHHHhhccccccccccCCC------CeEEEEecccccC-------CCCCCCCCCCCcEEEEccccccccC
Q psy16512 213 FSGTKYPLSWCNTVHRNHVFKKHFKCSRS------NCFVLLDAATYCG-------SNMLDLKQHQPDFISISFYKMFGYP 279 (815)
Q Consensus 213 ~tG~~~~l~~I~~l~~~~~~~~~~~~~~~------gi~vivD~a~~~g-------~~~~dl~~~~~D~vv~S~~K~~g~p 279 (815)
+||.+.|+++|.++|+ ++ |+++|||++++.+ ..+.++...++|++++|+||++++|
T Consensus 214 ~tG~~~~l~~I~~ia~-----------~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p 282 (502)
T 3hbx_A 214 LNGEFEDVKLLNDLLV-----------EKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVY 282 (502)
T ss_dssp TTCCBCCHHHHHHHHH-----------HHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCC
T ss_pred CCCcccCHHHHHHHHH-----------HhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCC
Confidence 9999999999999999 66 9999999999843 2344455557899999999999779
Q ss_pred CcceEEEEeccc-cc-cc--CcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh--hHH
Q psy16512 280 TGLGALIVKQKS-AH-VL--NKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK--SFT 353 (815)
Q Consensus 280 ~G~G~l~~~~~~-~~-~l--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~--~~~ 353 (815)
.|+|++++++.. +. .+ .+.+.++.... ....++.+...++++.+++..+...+. .++
T Consensus 283 ~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~-----------------~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~ 345 (502)
T 3hbx_A 283 AGIGWVIWRNKEDLPEELIFHINYLGADQPT-----------------FTLNFSKGSSQVIAQYYQLIRLGHEGYRNVME 345 (502)
T ss_dssp SSCEEEEESSGGGSCGGGCEEECSSSSCEEE-----------------CCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCHHHhhHHhccCcccccCCCCC-----------------ccccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999997643 21 11 12233322211 111245555566777777776654332 238
Q ss_pred HHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCch
Q psy16512 354 NAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPG 433 (815)
Q Consensus 354 ~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~ 433 (815)
+..++++++.+.|+++ ++++++.+. ...++++|.+++.. .++..++.+.|.++||.++.... +.
T Consensus 346 ~~~~~a~~l~~~L~~~------~~~~~~~~~------~~~~~v~f~~~~~~--~~~~~~l~~~L~~~Gi~v~~~~~--p~ 409 (502)
T 3hbx_A 346 NCRENMIVLREGLEKT------ERFNIVSKD------EGVPLVAFSLKDSS--CHTEFEISDMLRRYGWIVPAYTM--PP 409 (502)
T ss_dssp HHHHHHHHHHHHHHTT------TCEEECSCS------SSSSEEEEEESSCS--SCCHHHHHHHHHTTTCBCCEEEC--CT
T ss_pred HHHHHHHHHHHHHHhC------CCEEEEeCC------CCceEEEEEecCCC--cCCHHHHHHHHHhCCcEEeeccC--Cc
Confidence 8899999999999998 679998651 13689999987532 23444688999999999864221 11
Q ss_pred hhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 434 SCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 434 ~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.. ....++||+++..+|.+|+++|++.|++++.
T Consensus 410 ~~------------------------------~~~~~lRisv~~~~t~edid~li~~L~~~l~ 442 (502)
T 3hbx_A 410 NA------------------------------QHITVLRVVIREDFSRTLAERLVIDIEKVMR 442 (502)
T ss_dssp TC------------------------------TTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred cc------------------------------CCceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 00 0137899999999999999999999998764
No 41
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.94 E-value=4.7e-25 Score=242.84 Aligned_cols=318 Identities=14% Similarity=0.144 Sum_probs=229.1
Q ss_pred hhhhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHH
Q psy16512 61 DICYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 61 ~~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~ 139 (815)
..++|+.+... ..++.+.+++.+.+.. ...+++. . ..++|+++++++|+++++ |++|+|+++|+.+
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~y~~~------~----~~~lr~~la~~~~~~~~~--v~~~~g~~~a~~~ 97 (365)
T 3get_A 31 EVIKLASNENPFGTPPKAIECLRQNANK-AHLYPDD------S----MIELKSTLAQKYKVQNEN--IIIGAGSDQVIEF 97 (365)
T ss_dssp CCEECSSCCCTTCSCHHHHHHHHHHGGG-TTSCCCT------T----CHHHHHHHHHHHTCCGGG--EEEESSHHHHHHH
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHHHh-hccCCCC------C----hHHHHHHHHHHhCCCcce--EEECCCHHHHHHH
Confidence 34666655444 3567788888776542 2333331 1 358999999999998877 9999999999999
Q ss_pred HHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEc-CchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcc
Q psy16512 140 VSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSF-SVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGT 216 (815)
Q Consensus 140 ~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~-~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~ 216 (815)
++.++. ++|| |++....|+++.......+... .+++ +.+. .+++.+++++ ++++++|++++++||||.
T Consensus 98 ~~~~l~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l-------~~~~~~v~~~~p~nptG~ 168 (365)
T 3get_A 98 AIHSKL-NSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNL-DEFKKLYETH-------KDEIKLIFLCLPNNPLGE 168 (365)
T ss_dssp HHHHHC-CTTCEEEECSSCCTHHHHHHHHHTCEEEECSSSSCCH-HHHHHHHHHT-------TTTEEEEEEESSCTTTCC
T ss_pred HHHHHh-CCCCEEEEeCCChHHHHHHHHHcCCEEEEEecCCCCC-CCHHHHHHHh-------CCCCCEEEEcCCCCCCCC
Confidence 999997 8999 8888888877655444433222 4444 3455 7777776644 478999999999999999
Q ss_pred ccChHHHHHHhhccccccccccCCCCeEEEEecccc------cCCCCCCCC----CCCCcEEEEccccccccCCc--ceE
Q psy16512 217 KYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY------CGSNMLDLK----QHQPDFISISFYKMFGYPTG--LGA 284 (815)
Q Consensus 217 ~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~------~g~~~~dl~----~~~~D~vv~S~~K~~g~p~G--~G~ 284 (815)
++|++++.++++ .| ++|+++|+|++++ .+..+.+.. ..+.++++.|+||+|| ++| +|+
T Consensus 169 ~~~~~~l~~l~~--------~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~ 238 (365)
T 3get_A 169 CLDASEATEFIK--------GV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYG-LGGLRIGY 238 (365)
T ss_dssp CCCHHHHHHHHH--------TS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTS-CTTTCCEE
T ss_pred CcCHHHHHHHHH--------hC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhc-CcchheEE
Confidence 999999999998 34 4699999999987 332222221 2356789999999998 445 799
Q ss_pred EEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy16512 285 LIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYF 364 (815)
Q Consensus 285 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~ 364 (815)
+++++++++.+.... ...+++.....++.++++.........++..++++++.+
T Consensus 239 ~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 292 (365)
T 3get_A 239 GIANANIISAFYKLR--------------------------APFNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKE 292 (365)
T ss_dssp EEECHHHHHHHHHHS--------------------------CTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHhc--------------------------CCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 999887766553211 123467777777777776432222233788888999999
Q ss_pred HHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHH
Q psy16512 365 YFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDI 444 (815)
Q Consensus 365 ~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~ 444 (815)
.|+++ +++++.+. ++++++.++.. +..++.+.|.++||.+++|..|.
T Consensus 293 ~l~~~-------g~~~~~~~--------~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~------------- 339 (365)
T 3get_A 293 FAKKH-------NIKIIDSY--------TNFITYFFDEK-----NSTDLSEKLLKKGIIIRNLKSYG------------- 339 (365)
T ss_dssp HHHHT-------TCEECCCS--------SSEEEEECSSS-----CHHHHHHHHHTTTEECEECGGGT-------------
T ss_pred HHHhC-------CCEECCCC--------CeEEEEECCCC-----CHHHHHHHHHHCCEEEEECccCC-------------
Confidence 99887 56665432 56777777643 23468888888999999876542
Q ss_pred HHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 445 TIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 445 ~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.+++|+|++ +++|+++++++|++++
T Consensus 340 -----------------------~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 340 -----------------------LNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp -----------------------CSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred -----------------------CCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 278999998 8999999999999875
No 42
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.93 E-value=1.2e-24 Score=246.81 Aligned_cols=344 Identities=11% Similarity=0.010 Sum_probs=233.2
Q ss_pred ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCc---eeEEecCCchhhHHHHHhhhcc--
Q psy16512 72 VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDH---YSVIFTSGATSAIKTVSEYFEF-- 146 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~---~~iv~t~g~t~al~~~~~al~~-- 146 (815)
+.++.+.+.+.+.+.. ...++.......+. .+++++++++++|++.+. ..+++|+|+|+|+.+++.++..
T Consensus 53 ~~~~~v~e~~~~a~~~-~~~~~~~~~~~~~l----~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~ 127 (452)
T 2dgk_A 53 WDDENVHKLMDLSINK-NWIDKEEYPQSAAI----DLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRW 127 (452)
T ss_dssp CCCHHHHHHHHHTTTC-BTTCTTTCHHHHHH----HHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhcc-CCCChhhChhHHHH----HHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHH
Confidence 3445566655544432 22333333444444 778999999999997642 2489999999999999888751
Q ss_pred -----CCC-----c-EEEecCCCcchhhHHHHhhccc-eEEcCc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCC
Q psy16512 147 -----NEG-----S-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESNF 213 (815)
Q Consensus 147 -----~~g-----d-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~ 213 (815)
.+| + +|++. .|+++......++... .+++++ ++.++++.++++| +++|++|++++++|+
T Consensus 128 ~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i-------~~~t~~v~~~~~~n~ 199 (452)
T 2dgk_A 128 RKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEAC-------DENTIGVVPTFGVTY 199 (452)
T ss_dssp HHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHC-------CTTEEEEECBBSCTT
T ss_pred HHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCCCCCeECHHHHHHHH-------hhCCEEEEEEcCCcC
Confidence 144 4 88888 8887766555443222 455554 4567777776644 467999999999999
Q ss_pred CccccChHHHHHHhhccccccccccCC------CCeEEEEecccccCCC-------CCCCCCCCCcEEEEccccccccCC
Q psy16512 214 SGTKYPLSWCNTVHRNHVFKKHFKCSR------SNCFVLLDAATYCGSN-------MLDLKQHQPDFISISFYKMFGYPT 280 (815)
Q Consensus 214 tG~~~~l~~I~~l~~~~~~~~~~~~~~------~gi~vivD~a~~~g~~-------~~dl~~~~~D~vv~S~~K~~g~p~ 280 (815)
||.+.|+++|+++|+ + +|+++|||++++.+.. +.++...++|++++|+||++++|.
T Consensus 200 tG~~~~l~~I~~ia~-----------~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~ 268 (452)
T 2dgk_A 200 TGNYEFPQPLHDALD-----------KFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPL 268 (452)
T ss_dssp TCBBCCHHHHHHHHH-----------HHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCS
T ss_pred CcccCCHHHHHHHHH-----------HHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCC
Confidence 999999999999999 6 4999999999886532 234444478999999999887788
Q ss_pred cceEEEEecc-cc-cccC--cccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh--hHHH
Q psy16512 281 GLGALIVKQK-SA-HVLN--KTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK--SFTN 354 (815)
Q Consensus 281 G~G~l~~~~~-~~-~~l~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~--~~~~ 354 (815)
|+|+++++++ .+ +.+. +.+.++.... .-..++.+....+++.+++..+...+. ..++
T Consensus 269 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~ 331 (452)
T 2dgk_A 269 GCGWVIWRDEEALPQELVFNVDYLGGQIGT-----------------FAINFSRPAGQVIAQYYEFLRLGREGYTKVQNA 331 (452)
T ss_dssp SCEEEEESSGGGSCGGGCEEECCTTCCEEE-----------------CCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCHHHHHHHhccCccccCCCCCC-----------------cccCCCChhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999764 32 3221 2222221100 011345555556666666666543322 2288
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchh
Q psy16512 355 AFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGS 434 (815)
Q Consensus 355 ~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~ 434 (815)
..++++++.+.|+++ ++++++.+.. +....++++|.++......++..++.+.|.++||.++... .+..
T Consensus 332 ~~~~a~~l~~~L~~~------~~~~~~~~~~---~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~--~~~~ 400 (452)
T 2dgk_A 332 SYQVAAYLADEIAKL------GPYEFICTGR---PDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFT--LGGE 400 (452)
T ss_dssp HHHHHHHHHHHHHTT------SSEEEEEECC---TTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEE--CSTT
T ss_pred HHHHHHHHHHHHHhC------CCeEEecCCC---CCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeee--CCcc
Confidence 899999999999998 6788875421 1134689999987532222344568888989999876421 1111
Q ss_pred hhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 435 CQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 435 ~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
. ...+++|+|++.++|++|+++++++|++++..
T Consensus 401 ~------------------------------~~~~~lRis~~~~~t~e~id~li~~l~~~~~~ 433 (452)
T 2dgk_A 401 A------------------------------TDIVVMRIMCRRGFEMDFAELLLEDYKASLKY 433 (452)
T ss_dssp C------------------------------TTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred c------------------------------CCeEEEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 0 01378999999999999999999999987643
No 43
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.93 E-value=5e-25 Score=239.65 Aligned_cols=309 Identities=16% Similarity=0.163 Sum_probs=219.4
Q ss_pred hhhhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHH
Q psy16512 61 DICYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 61 ~~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~ 139 (815)
..++|+.+... .+++.+.+++.+.+.. ...+|+ .. ..++|+.+++++|+++++ |++|+|+++++.+
T Consensus 17 ~~i~l~~n~~~~~~~~~v~~a~~~~~~~-~~~y~~------~~----~~~lr~~la~~~~~~~~~--i~~t~G~~~~l~~ 83 (337)
T 3p1t_A 17 QAVCLAFNENPEAVEPRVQAAIAAAAAR-INRYPF------DA----EPRVMRKLAEHFSCPEDN--LMLVRGIDECFDR 83 (337)
T ss_dssp CCEECSSCCCCSCCCHHHHHHHHHHGGG-TTSCCT------TH----HHHHHHHHHHHHTSCGGG--EEEESHHHHHHHH
T ss_pred CceEeeCCCCCCCCCHHHHHHHHHhhhh-hccCCC------Cc----hHHHHHHHHHHhCcCHHH--EEEeCCHHHHHHH
Confidence 45777777554 4567777777665432 111221 23 789999999999998877 9999999999999
Q ss_pred HHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCC
Q psy16512 140 VSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFS 214 (815)
Q Consensus 140 ~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t 214 (815)
++.++ +|| |++..+.|+++... ++..| .++++.+..++++.++++ .+++++++++++|||
T Consensus 84 ~~~~~---~gd~vl~~~p~~~~~~~~---~~~~g~~~~~v~~~~~~~~d~~~l~~~---------~~~~~v~i~~p~npt 148 (337)
T 3p1t_A 84 ISAEF---SSMRFVTAWPGFDGYRAR---IAVSGLRHFEIGLTDDLLLDPNDLAQV---------SRDDCVVLANPSNPT 148 (337)
T ss_dssp HHHHS---TTSEEEEESSSCSHHHHH---HTTSCCEEEEECBCTTSSBCHHHHTTC---------CTTEEEEEESSCTTT
T ss_pred HHHhc---CCCeEEEeCCCcHHHHHH---HHHcCCEEEEecCCCCCCCCHHHHHhh---------cCCCEEEEeCCCCCC
Confidence 99987 688 88888777766443 44445 445555446677666541 458999999999999
Q ss_pred ccccChHHHHHHhhccccccccccCCCCeEEEEeccccc--CCCCCCCCCCCCcEEEEccccccccCCc--ceEEEEecc
Q psy16512 215 GTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC--GSNMLDLKQHQPDFISISFYKMFGYPTG--LGALIVKQK 290 (815)
Q Consensus 215 G~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~--g~~~~dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~ 290 (815)
|.++|++++.++++ .+++ +++|++++. +.........+.++++.|+||+|| ++| +|+++++++
T Consensus 149 G~~~~~~~l~~l~~-----------~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g-~~G~r~G~~~~~~~ 215 (337)
T 3p1t_A 149 GQALSAGELDQLRQ-----------RAGK-LLIDETYVDYSSFRARGLAYGENELVFRSFSKSYG-LAGLRLGALFGPSE 215 (337)
T ss_dssp CCCCCHHHHHHHHH-----------HCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESSSTTC-CTTTCCEEEECCHH
T ss_pred CCCCCHHHHHHHHH-----------hCCc-EEEECCChhhccccccccccCCCEEEEeeCchhcc-CcchheEEEEeCHH
Confidence 99999999999999 7787 566998762 222223333456899999999998 556 699999888
Q ss_pred cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc
Q psy16512 291 SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLS 370 (815)
Q Consensus 291 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~ 370 (815)
+++.+... ...++.+.+++.++..+++.........++..++++++.+.|+++
T Consensus 216 ~~~~l~~~--------------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~- 268 (337)
T 3p1t_A 216 LIAAMKRK--------------------------QWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL- 268 (337)
T ss_dssp HHHHHHTT--------------------------SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHhh--------------------------cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 76655321 123456677777776666543322223366777788888999876
Q ss_pred ccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHh
Q psy16512 371 YSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHF 450 (815)
Q Consensus 371 ~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~ 450 (815)
+++++.+. ++++.+..++ + .++.+.|.++||.+++|..|..
T Consensus 269 ------g~~~~~~~--------~~~~~~~~~~--~-----~~~~~~l~~~gi~v~~g~~~~~------------------ 309 (337)
T 3p1t_A 269 ------GYRVASSE--------ANFVLVENAA--G-----ERTLRFLRERGIQVKDAGQFGL------------------ 309 (337)
T ss_dssp ------TCCBCCCS--------SSEEEEECTT--T-----HHHHHHHHHTTEECEEGGGGTC------------------
T ss_pred ------cCEECCCC--------CeEEEEEcCC--H-----HHHHHHHHHCCeEEEECccCCC------------------
Confidence 45554332 5677766542 2 2477888999999998865421
Q ss_pred hcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 451 QQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 451 ~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+++|+|++ +++|+++++++|++++.
T Consensus 310 -----------------~~~iRis~~---~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 310 -----------------HHHIRISIG---REEDNDRLLAALAEYSD 335 (337)
T ss_dssp -----------------CSEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred -----------------CCeEEEecC---CHHHHHHHHHHHHHHhh
Confidence 278999998 79999999999998753
No 44
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.93 E-value=6.4e-25 Score=243.86 Aligned_cols=324 Identities=13% Similarity=0.084 Sum_probs=222.3
Q ss_pred ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC--CCCCceeEEecCCchhhHHHHHhhhccCCC
Q psy16512 72 VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN--TDSDHYSVIFTSGATSAIKTVSEYFEFNEG 149 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g--~~~~~~~iv~t~g~t~al~~~~~al~~~~g 149 (815)
+.++.+.+++.+.+....+.++.. ..+. .+++.+.+++.+| +++++ |++|+|+++|+.+++.++. ++|
T Consensus 40 ~~~~~v~~a~~~~~~~~~~~y~~~---~~~l----~~~la~~l~~~~g~~~~~~~--i~~~~g~~~a~~~~~~~l~-~~g 109 (391)
T 3dzz_A 40 KIAPEIMASMEEKLKVAAFGYESV---PAEY----YKAVADWEEIEHRARPKEDW--CVFASGVVPAISAMVRQFT-SPG 109 (391)
T ss_dssp CCCHHHHHHHHHHHTTCCCCCBCC---CHHH----HHHHHHHHHHHHSCCCCGGG--EEEESCHHHHHHHHHHHHS-CTT
T ss_pred CCCHHHHHHHHHHHhcCcCCCCCC---CHHH----HHHHHHHHHHHhCCCCCHHH--EEECCCHHHHHHHHHHHhC-CCC
Confidence 356778888877765432222221 2333 6678888888888 56666 9999999999999999997 899
Q ss_pred c-EEEecCCCcchhhHHHHhhccc-eEEcCchhh---hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChH---
Q psy16512 150 S-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDA---RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLS--- 221 (815)
Q Consensus 150 d-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~---~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~--- 221 (815)
| |++...+|+++.......+... .++++.+.. ++++.++++++ .+++++|++++++||||.++|.+
T Consensus 110 d~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~------~~~~~~v~i~~p~nptG~~~~~~~l~ 183 (391)
T 3dzz_A 110 DQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLA------TPSVRMMVFCNPHNPIGYAWSEEEVK 183 (391)
T ss_dssp CEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHT------STTEEEEEEESSBTTTTBCCCHHHHH
T ss_pred CeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHh------ccCceEEEEECCCCCCCcccCHHHHH
Confidence 9 8888888887655444332222 334432222 66777766442 25799999999999999996654
Q ss_pred HHHHHhhccccccccccCCCCeEEEEecccccCC----CCCCCCCCC---Cc--EEEEccccccccCCc--ceEEEEe-c
Q psy16512 222 WCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS----NMLDLKQHQ---PD--FISISFYKMFGYPTG--LGALIVK-Q 289 (815)
Q Consensus 222 ~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~----~~~dl~~~~---~D--~vv~S~~K~~g~p~G--~G~l~~~-~ 289 (815)
+|.++|+ ++|+++|+|++++... .+.++..+. +| +++.|+||++| ++| +|+++++ +
T Consensus 184 ~i~~~~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g-~~G~r~G~~~~~~~ 251 (391)
T 3dzz_A 184 RIAELCA-----------KHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFN-LAALHAACAIIPNP 251 (391)
T ss_dssp HHHHHHH-----------HTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHT-CTTTCCEEEECCSH
T ss_pred HHHHHHH-----------HCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhcc-ccchhheEEEECCH
Confidence 5555566 8999999999987432 233333333 56 89999999998 445 8999987 6
Q ss_pred ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHh
Q psy16512 290 KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQ 368 (815)
Q Consensus 290 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~ 368 (815)
++.+.+.... .....++++..++.++.++++......... ++..++++++.+.|++
T Consensus 252 ~~~~~~~~~~-----------------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 308 (391)
T 3dzz_A 252 DLRARAEESF-----------------------FLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAK 308 (391)
T ss_dssp HHHHHHHHHH-----------------------HHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----------------------HhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6655543221 012233567777777777776533222222 7888899999999988
Q ss_pred -ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHH
Q psy16512 369 -LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITI 446 (815)
Q Consensus 369 -l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~ 446 (815)
+ |+++++.+.. +.++++.++... .+..++.+.| +++||.+++|..|....
T Consensus 309 ~~------~~~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~~~~~~------------ 360 (391)
T 3dzz_A 309 EV------PEVKVLDSNA-------SYLAWVDISALG---MNAEDFCKYLREKTGLIISAGNGYRGNG------------ 360 (391)
T ss_dssp HC------TTSEECCCCB-------SSEEEEECGGGC---SCHHHHHHHHHHHHCEECEESGGGCTTG------------
T ss_pred hC------CCcEEeccCc-------eEEEEEehhhcC---CCHHHHHHHHHHhCCEEEeCchhhCCCC------------
Confidence 6 6788876542 445556665321 2234577777 58999999987654321
Q ss_pred HHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 447 KFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 447 ~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+++|+|++ ++++++++++++|.+++.+
T Consensus 361 ---------------------~~~iRis~~--~~~~~i~~~l~~l~~~l~~ 388 (391)
T 3dzz_A 361 ---------------------HEFVRINLA--CPKELVIDGMQRLKQGVLN 388 (391)
T ss_dssp ---------------------GGEEEEECC--SCHHHHHHHHHHHHHHHHT
T ss_pred ---------------------CCEEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 379999998 6899999999999998754
No 45
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.93 E-value=1.3e-24 Score=242.37 Aligned_cols=350 Identities=12% Similarity=0.119 Sum_probs=235.5
Q ss_pred CcccCCCcceeeeccccccchhhhhhhhcc-cc-cchhhHHHHHHHHhhccccCCCCh--hhhhhhhhhhHHHHHHHHHh
Q psy16512 41 PIKTKFGYHIIMVEGKNHLKDICYLDYTGA-GV-YSQSQMNQTIEQLKENIFSHPHGN--SVLSDFCVSEIDQMRTKILQ 116 (815)
Q Consensus 41 pv~t~fGyhIi~ved~~~~~~~iyLd~a~~-~~-~p~~v~~al~~~l~~~~~~np~s~--~~~~~~~~~~~~~~r~~la~ 116 (815)
.+...-|.++. .+. +..+.|..+.. +. .++.+.+++.+.+........... ...... .+++++++++
T Consensus 29 ~~~~~~g~~~~-~~g----~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~----~~~l~~~la~ 99 (398)
T 3a2b_A 29 PIQSKQDTEVK-IDG----RRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDI----HVELEEKLSA 99 (398)
T ss_dssp CBCSCSSSEEE-ETT----EEEEECSCSCTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHH----HHHHHHHHHH
T ss_pred eecCCCCceEE-ECC----ceEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHH----HHHHHHHHHH
Confidence 45566677665 322 12233333322 22 567777777776654211111100 112234 7889999999
Q ss_pred HcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccceEEcCchhhhcchhhhhhhhhhh
Q psy16512 117 YFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENV 195 (815)
Q Consensus 117 ~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~l~~~~ 195 (815)
++|.+ + +++|+|+++|+.+++.++. ++|| |++....|+++.......+.. .+.++. .+++.++++++
T Consensus 100 ~~g~~--~--v~~~~ggt~a~~~~~~~~~-~~gd~V~~~~p~~~~~~~~~~~~g~~-~~~v~~---~d~~~l~~~l~--- 167 (398)
T 3a2b_A 100 YVGKE--A--AILFSTGFQSNLGPLSCLM-GRNDYILLDERDHASIIDGSRLSFSK-VIKYGH---NNMEDLRAKLS--- 167 (398)
T ss_dssp HHTCS--E--EEEESSHHHHHHHHHHHSS-CTTCEEEEETTCCHHHHHHHHHSSSE-EEEECT---TCHHHHHHHHH---
T ss_pred HhCCC--c--EEEECCHHHHHHHHHHHHh-CCCCEEEECCccCHHHHHHHHHcCCc-eEEeCC---CCHHHHHHHHH---
Confidence 99973 3 9999999999999999997 8999 888898998876654443221 333332 34555555443
Q ss_pred hhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC---CCCCCC-C----CCcE
Q psy16512 196 ENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN---MLDLKQ-H----QPDF 267 (815)
Q Consensus 196 ~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~---~~dl~~-~----~~D~ 267 (815)
+....++++|++++++||||.+.|+++|.++|+ ++|+++|+|++++.+.. ..++.. + ++|+
T Consensus 168 ~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di 236 (398)
T 3a2b_A 168 RLPEDSAKLICTDGIFSMEGDIVNLPELTSIAN-----------EFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDL 236 (398)
T ss_dssp TSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHH-----------HHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSE
T ss_pred hhccCCceEEEEeCCCCCCCCccCHHHHHHHHH-----------HcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeE
Confidence 100116899999999999999999999999999 89999999999976532 122211 1 2699
Q ss_pred EEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHh
Q psy16512 268 ISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK 347 (815)
Q Consensus 268 vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~ 347 (815)
++.|+||+++ |+| |++++++++++.+..... .....++.+....+++.++++.+..
T Consensus 237 ~~~s~sK~~~-~~G-G~~~~~~~~~~~l~~~~~----------------------~~~~~~~~~~~~~a~~~~~l~~~~~ 292 (398)
T 3a2b_A 237 IMGTFSKSLA-SLG-GFVAGDADVIDFLKHNAR----------------------SVMFSASMTPASVASTLKALEIIQN 292 (398)
T ss_dssp EEEESSSTTC-SSC-EEEEECHHHHHHHHHHCH----------------------HHHSSBCCCHHHHHHHHHHHHHHHH
T ss_pred EEeccccccc-CCC-cEEEeCHHHHHHHHHhcc----------------------cceecCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999 888 999999887665532110 0112234555555556677776544
Q ss_pred hhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccC
Q psy16512 348 KRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTG 427 (815)
Q Consensus 348 ~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g 427 (815)
.....++.+++++++.+.|+++ +++++.+ .++++++.++.. .+..++.+.|.++||.+++|
T Consensus 293 ~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~--------~g~~~~~~~~~~----~~~~~l~~~l~~~gi~v~~~ 353 (398)
T 3a2b_A 293 EPEHIEKLWKNTDYAKAQLLDH-------GFDLGAT--------ESPILPIFIRSN----EKTFWVTKMLQDDGVFVNPV 353 (398)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHT-------TCCBCSC--------CSSEEEEECCCH----HHHHHHHHHHHHTTEECEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHhc-------CCCcCCC--------CCCEEEEEcCCH----HHHHHHHHHHHHCCcEEEee
Confidence 3223388899999999999886 4554432 267888877521 12335777887889999988
Q ss_pred ccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 428 CHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 428 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
..|..+. ..+++|++++.+++++++++++++|++++.+
T Consensus 354 ~~~~~~~--------------------------------~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 391 (398)
T 3a2b_A 354 VSPAVPA--------------------------------EESLIRFSLMATHTYDQIDEAIEKMVKVFKQ 391 (398)
T ss_dssp CTTTSCG--------------------------------GGCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCC--------------------------------CCceEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 6653211 1378999999989999999999999998743
No 46
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.93 E-value=1.1e-24 Score=241.37 Aligned_cols=315 Identities=12% Similarity=0.059 Sum_probs=222.0
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-E
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-F 151 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-v 151 (815)
.++.+.+++.+.+.. ... +..... ..++++.+++++++++++ |++|+|+++|+.+++.++. ++|| |
T Consensus 39 ~~~~v~~a~~~~~~~-~~~-----y~~~~~----~~~l~~~la~~~~~~~~~--v~~~~g~~~a~~~~~~~~~-~~gd~V 105 (381)
T 1v2d_A 39 PPPFLLEAVRRALGR-QDQ-----YAPPAG----LPALREALAEEFAVEPES--VVVTSGATEALYVLLQSLV-GPGDEV 105 (381)
T ss_dssp CCHHHHHHHHHHTTT-SCS-----CCCTTC----CHHHHHHHHHHHTSCGGG--EEEESSHHHHHHHHHHHHC-CTTCEE
T ss_pred CCHHHHHHHHHHHHH-hcC-----CCCCCC----CHHHHHHHHHhcCCChhh--EEEcCChHHHHHHHHHHhC-CCCCEE
Confidence 456777777665543 111 111123 678999999999998877 9999999999999999997 8898 8
Q ss_pred EEecCCCcchhhHHHHhhccc-eEEcC---chhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC---hHHHH
Q psy16512 152 IYLTDNHTSVLGMRELVKTNQ-IYSFS---VDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP---LSWCN 224 (815)
Q Consensus 152 v~~~~~h~s~~~~~~~~~~~g-~v~~~---~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~---l~~I~ 224 (815)
++....|+++....+..+... .++.+ .+..++++.+++++ .+++++|++++++||||.++| +++|.
T Consensus 106 l~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l-------~~~~~~v~~~~~~nptG~~~~~~~l~~i~ 178 (381)
T 1v2d_A 106 VVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKAL-------TPRTRALLLNTPMNPTGLVFGERELEAIA 178 (381)
T ss_dssp EEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTC-------CTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred EEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhc-------CcCCEEEEECCCCCCCCCccCHHHHHHHH
Confidence 899989988765444332222 55554 23455666666533 467899999999999999998 55666
Q ss_pred HHhhccccccccccCCCCeEEEEecccccCC---CCCCCC--CCCCcEEEEccccccccCCc--ceEEEEecccccccCc
Q psy16512 225 TVHRNHVFKKHFKCSRSNCFVLLDAATYCGS---NMLDLK--QHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNK 297 (815)
Q Consensus 225 ~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~---~~~dl~--~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~ 297 (815)
++|+ ++|+++|+|++++... .+.++. ..+.|+++.|+||+|| ++| +|++++++++++.+..
T Consensus 179 ~~~~-----------~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~ 246 (381)
T 1v2d_A 179 RLAR-----------AHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLE-ATGYRVGWIVGPKEFMPRLAG 246 (381)
T ss_dssp HHHH-----------HTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTT-CGGGCCEEEECCTTTHHHHHH
T ss_pred HHHH-----------HcCCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcC-CcccceEEEEeCHHHHHHHHH
Confidence 7777 8999999999987532 223332 3478999999999998 558 8999998887665532
Q ss_pred ccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH--HhhhhhH-HHHHHHHHHHHHHHHhccccCC
Q psy16512 298 TFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM--EKKRKSF-TNAFELSQYTYFYFKQLSYSNG 374 (815)
Q Consensus 298 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l--~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~ 374 (815)
.. .+..++.+.....++.++++.. ....... ++..++++++.+.|++.
T Consensus 247 ~~------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----- 297 (381)
T 1v2d_A 247 MR------------------------QWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM----- 297 (381)
T ss_dssp HH------------------------HHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HH------------------------hhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC-----
Confidence 11 1223456777777777777754 2211222 78888999999999885
Q ss_pred CCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCC
Q psy16512 375 QPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGH 454 (815)
Q Consensus 375 ~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~ 454 (815)
+++++.+.. +.++++.++.. . +.+.+.++||.+++|..|....
T Consensus 298 --g~~~~~~~~-------~~~~~~~~~~~---~-----~~~~l~~~gi~v~~g~~~~~~~-------------------- 340 (381)
T 1v2d_A 298 --GLRVYVPEG-------TYFLMAELPGW---D-----AFRLVEEARVALIPASAFYLED-------------------- 340 (381)
T ss_dssp --TCCEECCSB-------SSEEEEECTTC---C-----HHHHHHHTCEECEEGGGGCSSS--------------------
T ss_pred --CCEecCCCc-------ceEEEEecChH---h-----HHHHHHhCCEEEecchHhCCCC--------------------
Confidence 566665432 55677766532 1 6677889999999886553210
Q ss_pred ccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 455 ICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 455 ~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
...+++|+|++. ++++++++++.|.+++.+.
T Consensus 341 -----------~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~ 371 (381)
T 1v2d_A 341 -----------PPKDLFRFAFCK--TEEELHLALERLGRVVNSP 371 (381)
T ss_dssp -----------CCTTEEEEECCS--CHHHHHHHHHHHHHHC---
T ss_pred -----------CCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhc
Confidence 113789999986 8999999999999986543
No 47
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.93 E-value=4.1e-24 Score=240.71 Aligned_cols=323 Identities=14% Similarity=0.071 Sum_probs=229.2
Q ss_pred cchhhHHHHHHHHhhccccCCCCh--hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGN--SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS 150 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~--~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd 150 (815)
.++.+.+++.+.+.....+++.+. ...... ..++++.+++++|++ + .++++++++|+..++.++. ++||
T Consensus 79 ~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~----~~~l~~~la~~~g~~-~---~i~~~sGs~a~~~al~~l~-~~gd 149 (427)
T 2w8t_A 79 FDPDVIAAGKEALEKFGSGTCGSRMLNGTFHD----HMEVEQALRDFYGTT-G---AIVFSTGYMANLGIISTLA-GKGE 149 (427)
T ss_dssp GCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHH----HHHHHHHHHHHHTCS-E---EEEESCHHHHHHHHHHHHS-CTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCcccccccCCcHH----HHHHHHHHHHHhCCC-c---eEEecCcHHHHHHHHHHhc-CCCC
Confidence 557788887776654222222221 112234 789999999999975 2 5555666779999999887 8999
Q ss_pred -EEEecCCCcchhhHHHHhhccceEEcCchhhhcchhhhhhhhhhhhhcCC-CccEEEEecccCCCccccChHHHHHHhh
Q psy16512 151 -FIYLTDNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRH-SNSLFVYPAESNFSGTKYPLSWCNTVHR 228 (815)
Q Consensus 151 -vv~~~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~l~~~~~~~~~-~t~lv~i~~~~n~tG~~~~l~~I~~l~~ 228 (815)
|++....|+++.......+.. .+.++. .+++.++++++ ...+ ++++|++++++||||.+.|+++|.++|+
T Consensus 150 ~vl~~~~~h~~~~~~~~~~g~~-~~~~~~---~d~~~le~~l~----~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~ 221 (427)
T 2w8t_A 150 YVILDADSHASIYDGCQQGNAE-IVRFRH---NSVEDLDKRLG----RLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAK 221 (427)
T ss_dssp EEEEETTCCHHHHHHHHHSCSE-EEEECT---TCHHHHHHHHH----TSCSSSCEEEEEESEETTTTEECCHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHcCCe-eEEeCC---CCHHHHHHHHH----hccCCCCeEEEEcCCCCCCCCccCHHHHHHHHH
Confidence 888888998876655443211 344432 35555655443 1112 6899999999999999999999999999
Q ss_pred ccccccccccCCCCeEEEEecccccCCCC---------CCCCCCCCcEEEEccccccccCCcceEEEEecccccccCccc
Q psy16512 229 NHVFKKHFKCSRSNCFVLLDAATYCGSNM---------LDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTF 299 (815)
Q Consensus 229 ~~~~~~~~~~~~~gi~vivD~a~~~g~~~---------~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~ 299 (815)
++|+++|+|++++.+... +++. .++|+++.|+||++| ++| |++++++++++.+.+..
T Consensus 222 -----------~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~-~~~di~~~s~sK~~g-~~g-G~v~~~~~l~~~l~~~~ 287 (427)
T 2w8t_A 222 -----------KHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSKSVG-TVG-GFVVSNHPKFEAVRLAC 287 (427)
T ss_dssp -----------HTTCEEEEECTTTTTTSSTTSCCHHHHTTCT-TCCSEEEEESSSTTC-SCC-EEEEECCTTGGGGGGTC
T ss_pred -----------HcCCEEEEECCccccccCCCCCchHhhcCCC-cCCcEEEecchhhhc-cCC-CEEEeCHHHHHHHHHhc
Confidence 899999999999877543 3432 267999999999999 767 99999988876654321
Q ss_pred ccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE
Q psy16512 300 YGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE 379 (815)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~ 379 (815)
. .....++.+...++++.++++.+.......++..++++++.+.|+++ ++.
T Consensus 288 ~----------------------~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~ 338 (427)
T 2w8t_A 288 R----------------------PYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-------GFR 338 (427)
T ss_dssp H----------------------HHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH-------TCE
T ss_pred c----------------------cccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-------CCc
Confidence 0 00123567778888877888876543233388999999999999887 566
Q ss_pred EcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCc
Q psy16512 380 LYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDD 459 (815)
Q Consensus 380 l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~ 459 (815)
+..+. ..++++++.+++. ....++.+.|.++||.++++..+..+
T Consensus 339 ~~~~~------~~~~~~~~~~~~~----~~~~~l~~~L~~~Gi~v~~~~~~~~~-------------------------- 382 (427)
T 2w8t_A 339 LGTET------CDSAIVAVMLEDQ----EQAAMMWQALLDGGLYVNMARPPATP-------------------------- 382 (427)
T ss_dssp ESCSS------CCSSEEEEEESSH----HHHHHHHHHHHHTTEECEEECTTTSC--------------------------
T ss_pred ccCCC------CCCCEEEEEECCH----HHHHHHHHHHHHCCeEEeeeCCCCCC--------------------------
Confidence 66332 1267888887531 12235778888889999887543311
Q ss_pred ccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 460 KDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 460 ~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
...+++|++++.+++++|+++++++|++++.+
T Consensus 383 ------~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~ 414 (427)
T 2w8t_A 383 ------AGTFLLRCSICAEHTPAQIQTVLGMFQAAGRA 414 (427)
T ss_dssp ------TTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ------CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 01378999999999999999999999998754
No 48
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.93 E-value=6.2e-26 Score=257.62 Aligned_cols=354 Identities=11% Similarity=0.005 Sum_probs=228.8
Q ss_pred ccccccchhhhhhhhcccccchhhHHHHHHHHhhccccCCCC-----hh-----hhhhhhhhhHHHHHHHHHhHcCCCCC
Q psy16512 54 EGKNHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHG-----NS-----VLSDFCVSEIDQMRTKILQYFNTDSD 123 (815)
Q Consensus 54 ed~~~~~~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s-----~~-----~~~~~~~~~~~~~r~~la~~~g~~~~ 123 (815)
++|+..+..+|||+++.++.++.+.+++....... +.++.. .. ..........+++++++++++|++++
T Consensus 73 ~~~~~~~~~~yld~aa~~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~ 151 (456)
T 2z67_A 73 KFLSMMDTDKDPKSVRIGEREARTYSKIHEELSSG-FCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVH 151 (456)
T ss_dssp HHHHTTBGGGCTTCEECSSCCCCCSCHHHHHHTTT-CTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHhccccccccccccccccccccccccCccccc-cCCCccHHHHHHhhCcccccCcHHHHHHHHHHHHHHHHcCCCCC
Confidence 35555667799999999999999998876643211 222211 00 00001223378899999999999763
Q ss_pred ceeEEecCCch-hhHHHHHhhhcc-CCCc-EEEecCCCcchhhHHHHhhccc-eEEc---Cchhhhcchhhhhhhhhhhh
Q psy16512 124 HYSVIFTSGAT-SAIKTVSEYFEF-NEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSF---SVDDARNMLNEFKESQENVE 196 (815)
Q Consensus 124 ~~~iv~t~g~t-~al~~~~~al~~-~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~---~~~~~~~~~~~~~~l~~~~~ 196 (815)
++||+|+| .++.+++.++.. .+|+ +|++..+|+++....+..+... .++. +.++.+++++++++|+ ..
T Consensus 152 ---~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~--~~ 226 (456)
T 2z67_A 152 ---AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIK--KE 226 (456)
T ss_dssp ---EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHH--HH
T ss_pred ---EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEeccCCCCCcCHHHHHHHHH--HH
Confidence 99999999 566556665431 2567 8888889999765544432222 3333 4455678888877552 00
Q ss_pred hcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc---CCCCCCCCCC--CCcEEEEc
Q psy16512 197 NMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC---GSNMLDLKQH--QPDFISIS 271 (815)
Q Consensus 197 ~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~---g~~~~dl~~~--~~D~vv~S 271 (815)
....++.+|++++++|+||.+.|+++|.++|+ ++|+++++|++++. |..+.+...+ ++|++++|
T Consensus 227 ~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~-----------~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s 295 (456)
T 2z67_A 227 IELGNRPCVLSTLTFFPPRNSDDIVEIAKICE-----------NYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSS 295 (456)
T ss_dssp HHTTCCEEEEEESSCCTTBCCCCHHHHHHHHH-----------HHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEE
T ss_pred hhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----------HcCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEEEc
Confidence 00136788889999999999999999999999 89999999977653 3333332222 78999999
Q ss_pred cccccccCCcceEEEEe-cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh
Q psy16512 272 FYKMFGYPTGLGALIVK-QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK 350 (815)
Q Consensus 272 ~~K~~g~p~G~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~ 350 (815)
+||++++|.|+|+++++ +++++.+.+.+.|+. +....+++.+++..+...+.
T Consensus 296 ~hK~~~~p~g~G~l~~~~~~~~~~l~~~~~g~~---------------------------~~~~~~~~~aal~~l~~~~~ 348 (456)
T 2z67_A 296 SDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRA---------------------------SATPVVNTLVSLLSMGSKNY 348 (456)
T ss_dssp HHHHHCCCSSCEEEEESCHHHHHHHHTTSCSCB---------------------------CSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCCCCeEEEEEcCHHHHhhcCcCCCCCC---------------------------CCCHHHHHHHHHHHHHHHHH
Confidence 99987779999999995 456555544443221 11224445555655543332
Q ss_pred -h-HHHHHHHHHHHHHHHHhccccCCCC---cEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcE-e
Q psy16512 351 -S-FTNAFELSQYTYFYFKQLSYSNGQP---LVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQ-L 424 (815)
Q Consensus 351 -~-~~~~~~l~~~l~~~L~~l~~~~~~p---~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~-v 424 (815)
. .++..++++++.+.|+++ + ++.++.+ . ++++|.+..... ..++.+.|.++||. +
T Consensus 349 ~~~~~~~~~~~~~l~~~L~~~------~~~~g~~v~~~--------~-~~v~~~~~~~~~----~~~l~~~L~~~gi~~~ 409 (456)
T 2z67_A 349 LELVKNQKNSKKLLDELLNDL------SKKTGGKFLDV--------E-SPIASCISVNSD----PVEIAAKLYNLRVTGP 409 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHSSCCBCCC--------C-CSSEEEEECSSC----HHHHHHHHHHTTEESC
T ss_pred HHHHHHHHHHHHHHHHHHHhc------ccccCCEecCC--------C-CeEEEEEecccH----HHHHHHHHHHcCCCcc
Confidence 2 288999999999999887 4 5444432 1 667777632111 23577888888862 2
Q ss_pred ccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 425 RTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 425 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
+... .. | .+. |..|.. .+.+++|+|++.++|++||++++++|++++
T Consensus 410 rv~~--~~-------g--------~f~-G~~~~~-------~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 410 RGIK--KT-------D--------HFG-NCYLGT-------YTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp EEEC--TT-------C--------HHH-HTCSSC-------CSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred eEEe--ec-------C--------ccc-cccccc-------cCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 2110 00 0 000 111211 123799999999999999999999998754
No 49
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.93 E-value=2.3e-24 Score=240.09 Aligned_cols=349 Identities=13% Similarity=0.070 Sum_probs=236.1
Q ss_pred CcccCCCcceeeeccccccchhhhhhhhcccc----cchhhHHHHHHHHhhccccCCCCh--hhhhhhhhhhHHHHHHHH
Q psy16512 41 PIKTKFGYHIIMVEGKNHLKDICYLDYTGAGV----YSQSQMNQTIEQLKENIFSHPHGN--SVLSDFCVSEIDQMRTKI 114 (815)
Q Consensus 41 pv~t~fGyhIi~ved~~~~~~~iyLd~a~~~~----~p~~v~~al~~~l~~~~~~np~s~--~~~~~~~~~~~~~~r~~l 114 (815)
+++..-|-++.. ++..|+|.....+ .++.+.+++.+.+....+..+.+. ...... ..++++++
T Consensus 29 ~~~~~~g~~v~~-------~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~----~~~l~~~l 97 (399)
T 3tqx_A 29 IITSPQNAEIKV-------GEKEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTI----HKELEKDI 97 (399)
T ss_dssp CBCSCSSSEEEE-------TTEEEEECSSCCTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHH----HHHHHHHH
T ss_pred cccCCCCceEee-------CCeeEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchH----HHHHHHHH
Confidence 455666666543 1223444443332 357777777776654222222111 223344 78999999
Q ss_pred HhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc--eEEcCchhhhcchhhhhhh
Q psy16512 115 LQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ--IYSFSVDDARNMLNEFKES 191 (815)
Q Consensus 115 a~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v~~~~~~~~~~~~~~~~l 191 (815)
++++|.+ + .+++++ +++|+..++.++. ++|| |++....|+++...... .| .+.+.. .+++.+++++
T Consensus 98 a~~~~~~-~--~i~~~s-Gt~a~~~~l~~~~-~~gd~v~~~~~~~~~~~~~~~~---~g~~~~~~~~---~d~~~l~~~l 166 (399)
T 3tqx_A 98 SEFLGTD-D--TILYSS-CFDANGGLFETLL-GPEDAIISDELNHASIIDGIRL---CKAQRYRYKN---NAMGDLEAKL 166 (399)
T ss_dssp HHHHTCS-E--EEEESC-HHHHHHTTHHHHC-CTTCEEEEETTCCHHHHHHHHS---CCSEEEEECT---TCTTHHHHHH
T ss_pred HHHHCCC-c--EEEECc-hHHHHHHHHHHhc-CCCCEEEECCcccHHHHHHHHH---cCCceeEeCC---CCHHHHHHHH
Confidence 9999975 3 256555 5789999998887 8999 88888889887654433 34 333332 3455555544
Q ss_pred hhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCC------CC--CC
Q psy16512 192 QENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLD------LK--QH 263 (815)
Q Consensus 192 ~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~d------l~--~~ 263 (815)
+.... ...++++|++++++||||.++|+++|.++|+ ++|+++|+|++++.+....+ .. ..
T Consensus 167 ~~~~~-~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 234 (399)
T 3tqx_A 167 KEADE-KGARFKLIATDGVFSMDGIIADLKSICDLAD-----------KYNALVMVDDSHAVGFIGENGRGTPEYCGVAD 234 (399)
T ss_dssp HHHHT-TTCSSEEEEEESEETTTTEECCHHHHHHHHH-----------HTTCEEEEECTTTTTTSSTTSCCHHHHHTCTT
T ss_pred Hhhhc-cCCCceEEEEeCCCCCCCCcCCHHHHHHHHH-----------HcCCEEEEECCccccccCCCCCchHHhhCCCC
Confidence 31110 0127999999999999999999999999999 89999999999976543221 11 12
Q ss_pred CCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHH
Q psy16512 264 QPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFD 343 (815)
Q Consensus 264 ~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~ 343 (815)
++|+++.|+||+|++++| |+++.++++++.+..... .....++.+...+.++.++++
T Consensus 235 ~~di~~~s~sK~~~g~~g-G~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~l~ 291 (399)
T 3tqx_A 235 RVDILTGTLGKALGGASG-GYTSGHKEIIEWLRNRSR----------------------PYLFSNTVAPVIVATSLKVLE 291 (399)
T ss_dssp CCSEEEEESSSSSCSSCC-EEEEECHHHHHHHHHHCH----------------------HHHSSCCCCHHHHHHHHHHHH
T ss_pred CCcEEEecchHhcccCce-EEEEcCHHHHHHHHHhCc----------------------ceeccCCCcHHHHHHHHHHHH
Confidence 579999999999997777 999999887765532110 011245778888888888888
Q ss_pred HHH-hhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCc
Q psy16512 344 TME-KKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKI 422 (815)
Q Consensus 344 ~l~-~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI 422 (815)
.+. ......++..++++++.+.|+++ ++++..+ .++++++.++.. .+..++.+.|.++||
T Consensus 292 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~--------~~~~~~~~~~~~----~~~~~~~~~l~~~gi 352 (399)
T 3tqx_A 292 LLKTEGPQLRKQLQENSRYFRAGMEKL-------GFQLVPG--------NHPIIPVMLGDA----QLATNMADHLLQEGI 352 (399)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHH-------TCCBCCC--------SSSEEEEEEECH----HHHHHHHHHHHHTTE
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHc-------CCCcCCC--------CCCEEEEEeCCH----HHHHHHHHHHHHCCC
Confidence 773 22223388999999999999887 5555532 267888887642 122357788888999
Q ss_pred EeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 423 QLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 423 ~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.++++.+...+ ...+++|++++.+++++|+++++++|++++.+
T Consensus 353 ~v~~~~~~~~~--------------------------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 395 (399)
T 3tqx_A 353 YVVGFSYPVVP--------------------------------MGKARIRVQMSAVHTQQQLDRAIEAFGQVGKK 395 (399)
T ss_dssp ECCEECTTTSC--------------------------------TTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEeeeCCCCCC--------------------------------CCCceEEEEeecCCCHHHHHHHHHHHHHHHHH
Confidence 99865432110 11379999999999999999999999998754
No 50
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.93 E-value=2e-24 Score=237.40 Aligned_cols=317 Identities=15% Similarity=0.191 Sum_probs=221.0
Q ss_pred hhhhhhhhccc-ccchhhHHHHHHHHhhc---cccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhh
Q psy16512 61 DICYLDYTGAG-VYSQSQMNQTIEQLKEN---IFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSA 136 (815)
Q Consensus 61 ~~iyLd~a~~~-~~p~~v~~al~~~l~~~---~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~a 136 (815)
..++|+.+... ..++.+.+++.+.+... .+.+|+ .. ..++|+++++++|+++++ |++|+|+++|
T Consensus 27 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~------~~----~~~lr~~la~~~g~~~~~--i~~t~g~~~a 94 (360)
T 3hdo_A 27 SWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPS------AS----SQKLREVAGELYGFDPSW--IIMANGSDEV 94 (360)
T ss_dssp TSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCC------SS----CHHHHHHHHHHHTCCGGG--EEEESSHHHH
T ss_pred ceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCC------Cc----hHHHHHHHHHHhCcCcce--EEEcCCHHHH
Confidence 34555555444 35677888887766542 223332 12 578999999999988887 9999999999
Q ss_pred HHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCC
Q psy16512 137 IKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFS 214 (815)
Q Consensus 137 l~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t 214 (815)
+.+++.++. ++|| |++....|+++.......+... .++.+.+ ..++++.+ . .+++++++++++|||
T Consensus 95 l~~~~~~l~-~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~--~~~~~l~~-------~--~~~~~v~i~~p~npt 162 (360)
T 3hdo_A 95 LNNLIRAFA-AEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTGD--FRIAGFPE-------R--YEGKVFFLTTPNAPL 162 (360)
T ss_dssp HHHHHHHHC-CTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCTT--SSBTTCCS-------S--BCSSEEEEESSCTTT
T ss_pred HHHHHHHHh-CCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCCC--CCHHHHHh-------h--cCCCEEEEeCCCCCC
Confidence 999999997 8998 8888888877655444433222 4444433 22233222 1 236799999999999
Q ss_pred ccccChHHHHHHhhccccccccccCCCCeEEEEecccccC--CCCCCC-CCCCCcEEEEccccccccCCc--ceEEEEec
Q psy16512 215 GTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG--SNMLDL-KQHQPDFISISFYKMFGYPTG--LGALIVKQ 289 (815)
Q Consensus 215 G~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g--~~~~dl-~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~ 289 (815)
|.++|+++|.++|+ ++|+++|+|++++.. .....+ ...+.++++.|+||+|| ++| +|++++++
T Consensus 163 G~~~~~~~l~~l~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~ 230 (360)
T 3hdo_A 163 GPSFPLEYIDELAR-----------RCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYS-LAGMRIGLAIARP 230 (360)
T ss_dssp CCCCCHHHHHHHHH-----------HBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTS-CTTSCCEEEECCH
T ss_pred CCCcCHHHHHHHHH-----------HCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhc-CCccceeeEeeCH
Confidence 99999999999999 789999999998742 111111 12345688899999998 445 79999987
Q ss_pred ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q psy16512 290 KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQL 369 (815)
Q Consensus 290 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l 369 (815)
++.+.+.... ...+.+..+..++.++++.........++..++++++.+.|+++
T Consensus 231 ~~~~~~~~~~--------------------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 284 (360)
T 3hdo_A 231 EVIAALDKIR--------------------------DHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI 284 (360)
T ss_dssp HHHHHHHHHS--------------------------CSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC--------------------------CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 7765553211 12356777777777777753322223378888999999999886
Q ss_pred cccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHH
Q psy16512 370 SYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFH 449 (815)
Q Consensus 370 ~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~ 449 (815)
++.++.+. ++++.+.+++. +..++.+.|.++||.++++.. ..
T Consensus 285 -------~~~~~~~~--------~~~~~~~~~~~-----~~~~l~~~l~~~gi~v~~~~~---~~--------------- 326 (360)
T 3hdo_A 285 -------GYDVIPSQ--------GNYLFATPPDR-----DGKRVYDGLYARKVLVRHFSD---PL--------------- 326 (360)
T ss_dssp -------TCEECCCS--------SSEEEEECTTC-----CHHHHHHHHHHTTEECBCCCS---TT---------------
T ss_pred -------CCEEcCCC--------ccEEEEECCCC-----CHHHHHHHHHHCCEEEEECCC---CC---------------
Confidence 56665332 67777766533 234688889999999987532 00
Q ss_pred hhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 450 FQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 450 ~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
..+++|+|++ +.+|+++++++|+++..+
T Consensus 327 -----------------~~~~iRis~~---~~~e~~~l~~al~~~~~~ 354 (360)
T 3hdo_A 327 -----------------LAHGMRISIG---TREEMEQTLAALKEIGEG 354 (360)
T ss_dssp -----------------TTTSEEEECC---CHHHHHHHHHHHHHHHC-
T ss_pred -----------------CCCEEEEEcC---CHHHHHHHHHHHHHHhcc
Confidence 0378999998 899999999999986543
No 51
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.93 E-value=3.6e-24 Score=246.95 Aligned_cols=359 Identities=12% Similarity=0.066 Sum_probs=226.8
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHhhccccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHH
Q psy16512 61 DICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 61 ~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~ 139 (815)
...|+++...+..+..+..++..... |++.. +.......+..+++++++++++|+++++ ++||+|+|+|+.+
T Consensus 108 ~p~~~~~~~~~~~~~~~~~~~l~~~~-----n~~~~~~~~s~~~~~le~~~~~~la~l~g~~~~~--~~~t~ggtea~~~ 180 (515)
T 2jis_A 108 HPRFFNQLFSGLDPHALAGRIITESL-----NTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSGD--GIFCPGGSISNMY 180 (515)
T ss_dssp STTEESSSCCCCCHHHHHHHHHHHHH-----CCCTTCTTTCHHHHHHHHHHHHHHHHHHTCSSCE--EEEESSHHHHHHH
T ss_pred CCCeEEEeeCCCCHHHHHHHHHHHHh-----ccCCCchhhchHHHHHHHHHHHHHHHHhCCCCCC--eEEcCCcHHHHHH
Confidence 34688888777777777665544322 33321 2222222222778999999999998655 9999999999988
Q ss_pred HHhhhcc-------CCC-------cEEEecCCCcchhhHHHHhhc---cc-eEEcCchhhhcchhhhhhhhhhhhhcCCC
Q psy16512 140 VSEYFEF-------NEG-------SFIYLTDNHTSVLGMRELVKT---NQ-IYSFSVDDARNMLNEFKESQENVENMRHS 201 (815)
Q Consensus 140 ~~~al~~-------~~g-------dvv~~~~~h~s~~~~~~~~~~---~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (815)
++.++.. .+| .++++..+|+++.......+. .. .++++.++.++++.++++|.+.. ....+
T Consensus 181 al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~-~~g~~ 259 (515)
T 2jis_A 181 AVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAE-AEGAV 259 (515)
T ss_dssp HHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHH-HTTCE
T ss_pred HHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHcCCCCCcEEEEecCCCCcCCHHHHHHHHHHHH-hCCCC
Confidence 8887631 245 367777889998877666544 12 56666666778888887664111 01225
Q ss_pred ccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCC-----CCCC-CCcEEEEccccc
Q psy16512 202 NSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLD-----LKQH-QPDFISISFYKM 275 (815)
Q Consensus 202 t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~d-----l~~~-~~D~vv~S~~K~ 275 (815)
+++|++++++|+||.+.|+++|+++|+ ++|+++|+|++++.+..+.+ +... ++|++++|+|||
T Consensus 260 ~~~Vv~~~~~n~tG~i~~l~~I~~la~-----------~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~ 328 (515)
T 2jis_A 260 PFLVSATSGTTVLGAFDPLEAIADVCQ-----------RHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKL 328 (515)
T ss_dssp EEEEEEEBSCTTTCCBCCHHHHHHHHH-----------HHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTST
T ss_pred cEEEEEeCCCCCCCCccCHHHHHHHHH-----------HcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccc
Confidence 899999999999999999999999999 89999999999988876554 3333 789999999999
Q ss_pred cccCCcceEEEEecc--ccccc----CcccccCceEEEEecCCcccccccCccccccCCC-CChhHHHHHHHHHHHHHhh
Q psy16512 276 FGYPTGLGALIVKQK--SAHVL----NKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT-VNYLAIISLKYGFDTMEKK 348 (815)
Q Consensus 276 ~g~p~G~G~l~~~~~--~~~~l----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt-~~~~~~~al~~al~~l~~~ 348 (815)
+++|.|+|+++++++ +++.. .+.+.+++.. ....+. ........+. .... ++..++..+...
T Consensus 329 l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~----~~~~~~----~~~~~~~~~rr~~al---~~~~~l~~lg~~ 397 (515)
T 2jis_A 329 LAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKF----YDVALD----TGDKVVQCGRRVDCL---KLWLMWKAQGDQ 397 (515)
T ss_dssp TCCCSCCEEEEESCCSCHHHHHHCC---------CC----SCGGGC----CGGGCSCSSCCCCHH---HHHHHHHHHHHH
T ss_pred cCCCCCeeEEEEeChHHHHHHHhcCCchhccCCccc----ccccCC----CCCCCCCCCCcccHH---HHHHHHHHHhHH
Confidence 988999999999987 44431 1222222110 000000 0000001110 1122 233334433332
Q ss_pred hh--hHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecC--C----CCccCH------HHHH
Q psy16512 349 RK--SFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHK--D----GTYYGY------SEVQ 414 (815)
Q Consensus 349 ~~--~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~--~----~~~~~~------~~v~ 414 (815)
+. ..++..++++++.+.|+++ |+++++.+.. .+.++|..... . ...+.. ..+.
T Consensus 398 g~~~~~~~~~~~a~~l~~~L~~~------~g~~~~~~~~-------~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~ 464 (515)
T 2jis_A 398 GLERRIDQAFVLARYLVEEMKKR------EGFELVMEPE-------FVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLK 464 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS------TTEEESSCCS-------SSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC------CCEEEeCCCC-------eeEEEEEEeCccccccccchhHHHHHHHHHHHHH
Confidence 22 2288899999999999998 7999987532 46678876321 1 111100 0133
Q ss_pred HhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEec-cCCCCHHHHHHHHHHHHH
Q psy16512 415 NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISY-GHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 415 ~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~-g~~~t~edi~~lv~~L~~ 493 (815)
+.+.+.|+..... .. .++. .+++|+++ +.++|++||++++++|++
T Consensus 465 ~~l~~~G~~~~~~-----~~----------------------------~~~~-~~~lRis~~~~~~t~edid~~~~~l~~ 510 (515)
T 2jis_A 465 ERMVKEGSMMIGY-----QP----------------------------HGTR-GNFFRVVVANSALTCADMDFLLNELER 510 (515)
T ss_dssp HHHHHHTSCEEEE-----EE----------------------------ETTE-EEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCEEEEE-----EE----------------------------ECCc-eEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3444555432110 00 0011 37899999 899999999999999998
Q ss_pred HHh
Q psy16512 494 YFL 496 (815)
Q Consensus 494 ~~~ 496 (815)
++.
T Consensus 511 ~~~ 513 (515)
T 2jis_A 511 LGQ 513 (515)
T ss_dssp HHT
T ss_pred HHh
Confidence 753
No 52
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.92 E-value=2.9e-24 Score=239.65 Aligned_cols=336 Identities=13% Similarity=0.138 Sum_probs=227.7
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEe-cCCchhhHHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIF-TSGATSAIKTV 140 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~-t~g~t~al~~~ 140 (815)
.+|+.+.+...+++.+.+++.+.. .......+........ ++++++++++++|++++ ++|++ |+|+|+|+.++
T Consensus 40 ~~~~~~~~~~~~~~~v~~a~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~la~~~g~~~~-~~i~~~t~g~t~al~~~ 113 (398)
T 2fyf_A 40 RDGRFGSGPSKVRLEQLQTLTTTA-AALFGTSHRQAPVKNL----VGRVRSGLAELFSLPDG-YEVILGNGGATAFWDAA 113 (398)
T ss_dssp SSCBCCSSSCCCCHHHHHGGGTTT-TTTTTSCTTSHHHHHH----HHHHHHHHHHHTTCCTT-CEEEEEETCHHHHHHHH
T ss_pred CCccccCCCCCCCHHHHHHHhhcC-CCccCcCcCCHHHHHH----HHHHHHHHHHHhCCCCC-ceEEEeCCchhHHHHHH
Confidence 456667777788888888775421 0111111222223334 78999999999999742 24888 99999999999
Q ss_pred HhhhccCCC-cEEEecCCCcchhhHHHHhhcc--c----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCC
Q psy16512 141 SEYFEFNEG-SFIYLTDNHTSVLGMRELVKTN--Q----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNF 213 (815)
Q Consensus 141 ~~al~~~~g-dvv~~~~~h~s~~~~~~~~~~~--g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~ 213 (815)
+.++. ++| +++ +..+|... +...+... | .++++ ++..... .++++|++|++++++||
T Consensus 114 ~~~l~-~~gv~~v-~~~~~~~~--~~~~~~~~~~g~~~~~v~~~-~g~~~~~-----------~i~~~~~~v~~~~~~np 177 (398)
T 2fyf_A 114 AFGLI-DKRSLHL-TYGEFSAK--FASAVSKNPFVGEPIIITSD-PGSAPEP-----------QTDPSVDVIAWAHNETS 177 (398)
T ss_dssp HHHTC-SSCEEEE-ECSHHHHH--HHHHHHHCTTSCCCEEEECC-TTCCCCC-----------CCCTTCSEEEEESEETT
T ss_pred HHHhc-CCCeEEE-eCCHHHHH--HHHHHHHhCCCCceEEEecC-CCCCCCc-----------cccCCCCEEEEeCcCCC
Confidence 99997 777 444 44444321 11122222 3 55665 2221111 12467999999999999
Q ss_pred CccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccccc
Q psy16512 214 SGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAH 293 (815)
Q Consensus 214 tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~ 293 (815)
||.++|+++|.++ +|+++|+|++++.+..++++. ++|++++|+||++|.+.|+|++++++++++
T Consensus 178 tG~~~~~~~i~~~--------------~~~~vivD~a~~~~~~~~~~~--~~di~~~s~sK~~~~~gg~g~l~~~~~~~~ 241 (398)
T 2fyf_A 178 TGVAVAVRRPEGS--------------DDALVVIDATSGAGGLPVDIA--ETDAYYFAPQKNFASDGGLWLAIMSPAALS 241 (398)
T ss_dssp TTEECCCCCCTTC--------------C-CEEEEECTTTTTTSCCCGG--GCSEEEECTTSTTCSCSSEEEEEECHHHHH
T ss_pred cceecchHHhhhh--------------cCCeEEEEeccccCCcccCcc--cCcEEEEecCcccCCCCceEEEEECHHHHH
Confidence 9999999887543 589999999999988777654 489999999999995546999999998876
Q ss_pred ccCc---------ccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh--hh-HHHHHHHHHH
Q psy16512 294 VLNK---------TFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR--KS-FTNAFELSQY 361 (815)
Q Consensus 294 ~l~~---------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~--~~-~~~~~~l~~~ 361 (815)
.+++ .+..++.. . .........++++..+++++.++++.+...+ .. .++..+++++
T Consensus 242 ~l~~~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~ 309 (398)
T 2fyf_A 242 RIEAIAATGRWVPDFLSLPIA---------V---ENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQR 309 (398)
T ss_dssp HHHHHHHTTCCCCGGGCHHHH---------H---HHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred HhhcccccCCCCCcEEehHHH---------h---hhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5532 11111100 0 0000123456889999999989998876543 22 3888999999
Q ss_pred HHHHHHhccccCCCCcEEEcCCCCCCCCCcccc-eEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcC
Q psy16512 362 TYFYFKQLSYSNGQPLVELYHDTDYGESKYQGN-IVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLG 440 (815)
Q Consensus 362 l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~-i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g 440 (815)
+.+.|+++ |+++++.+. +..+++ +++|.++.. ++..++.+.|.++||.+++|.. .+
T Consensus 310 l~~~L~~~------~g~~~~~~~----~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~gI~v~~g~~--------~~- 366 (398)
T 2fyf_A 310 LYSWAQER------PYTTPFVTD----PGLRSQVVGTIDFVDD----VDAGTVAKILRANGIVDTEPYR--------KL- 366 (398)
T ss_dssp HHHHHHHS------TTEEESCCS----GGGBCSSEEEEEECTT----SCHHHHHHHHHHTTCBCCSCCT--------TT-
T ss_pred HHHHHHHc------CCceeccCC----hhhcCCcEEEEECCCC----CCHHHHHHHHHHCCcEEecCcc--------cC-
Confidence 99999988 688887421 011244 888888531 2344688888888999987510 00
Q ss_pred CCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 441 LSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 441 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
..+++|+|++.+++++|+++++++|++++.
T Consensus 367 --------------------------~~~~iRis~~~~~t~e~i~~~~~~l~~~l~ 396 (398)
T 2fyf_A 367 --------------------------GRNQLRVAMFPAVEPDDVSALTECVDWVVE 396 (398)
T ss_dssp --------------------------CSSEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred --------------------------CCCEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 137899999999999999999999998764
No 53
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.92 E-value=9.1e-25 Score=241.91 Aligned_cols=323 Identities=13% Similarity=0.152 Sum_probs=220.9
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC--CCCCceeEEecCCchhhHHHHHhhhccCCCc
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN--TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS 150 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g--~~~~~~~iv~t~g~t~al~~~~~al~~~~gd 150 (815)
.++.+.+++.+.+....+.++.. ..+. .+++++.+++.+| +++++ |++|+|+++|+.+++.++. ++||
T Consensus 38 ~~~~v~~a~~~~~~~~~~~y~~~---~~~~----~~~l~~~l~~~~g~~~~~~~--v~~~~g~~~a~~~~~~~l~-~~gd 107 (383)
T 3kax_A 38 VPQPIQTALKKRIEHPIFGYTLP---PENI----GDIICNWTKKQYNWDIQKEW--IVFSAGIVPALSTSIQAFT-KENE 107 (383)
T ss_dssp CCHHHHHHHHHHHHSCCCCCCCC---CTTH----HHHHHHHHHHHHCCCCCGGG--EEEESCHHHHHHHHHHHHC-CTTC
T ss_pred CCHHHHHHHHHHHhcCCCCCCCC---CHHH----HHHHHHHHHHHhCCCCChhh--EEEcCCHHHHHHHHHHHhC-CCCC
Confidence 56778888877765433333221 2334 7788888999988 66666 9999999999999999997 8998
Q ss_pred -EEEecCCCcchhhHHHHhhccc-eEEcCchhh---hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHH
Q psy16512 151 -FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDA---RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNT 225 (815)
Q Consensus 151 -vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~---~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~ 225 (815)
|++....|+++.......+... .++++.++. ++++.+++++ ++++++|++++++||||.++|.+++.+
T Consensus 108 ~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l-------~~~~~~v~i~~p~nptG~~~~~~~l~~ 180 (383)
T 3kax_A 108 SVLVQPPIYPPFFEMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQF-------QQGVKLMLLCSPHNPIGRVWKKEELTK 180 (383)
T ss_dssp EEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHH-------TTTCCEEEEESSBTTTTBCCCHHHHHH
T ss_pred EEEEcCCCcHHHHHHHHHcCCEEEeccceecCCcEEEcHHHHHHHh-------CcCCeEEEEeCCCCCCCcCcCHHHHHH
Confidence 8888888877655444332222 334433222 5666666533 467999999999999999999777666
Q ss_pred HhhccccccccccCCCCeEEEEecccccCC----CCCCCCCC-----CCcEEEEccccccccCCc--ceEEEE-eccccc
Q psy16512 226 VHRNHVFKKHFKCSRSNCFVLLDAATYCGS----NMLDLKQH-----QPDFISISFYKMFGYPTG--LGALIV-KQKSAH 293 (815)
Q Consensus 226 l~~~~~~~~~~~~~~~gi~vivD~a~~~g~----~~~dl~~~-----~~D~vv~S~~K~~g~p~G--~G~l~~-~~~~~~ 293 (815)
+++ .|+++|+++|+|++++... .+.++..+ +.++++.|+||++| ++| +|++++ ++++.+
T Consensus 181 l~~--------~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~ 251 (383)
T 3kax_A 181 LGS--------LCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTITCMAPSKTFN-IAGLQASIIIIPNEKLRQ 251 (383)
T ss_dssp HHH--------HHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHT-CGGGCCEEEECCCHHHHH
T ss_pred HHH--------HHHHCCCEEEEEccccccccCCCCceeHhhcCccccCcEEEEEEChhhcc-CcchhheEEEeCCHHHHH
Confidence 633 2238999999999987532 22233222 34588999999998 556 799988 455555
Q ss_pred ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHh-ccc
Q psy16512 294 VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQ-LSY 371 (815)
Q Consensus 294 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~-l~~ 371 (815)
.+.... ..+..++++..++.++.++++......... ++.+++++++.+.|++ +
T Consensus 252 ~~~~~~-----------------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-- 306 (383)
T 3kax_A 252 AFTSIQ-----------------------YRQGFHGLNIFAYTAMQSAYTECNDWLNEIRFYIEDNAKFACEYIKDHI-- 306 (383)
T ss_dssp HHHHHH-----------------------HHTTCCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHH-----------------------hhcccCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhC--
Confidence 443221 112234677777777777776532222222 7888889999999987 6
Q ss_pred cCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhh-cCCcEeccCccCCchhhhhhcCCCHHHHHHHh
Q psy16512 372 SNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN-LKKIQLRTGCHCNPGSCQRFLGLSDITIKFHF 450 (815)
Q Consensus 372 ~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~-~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~ 450 (815)
|+++++.+.. +.++++.++... .+..++.+.|. ++||.+++|..|...
T Consensus 307 ----~~~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~~~~~----------------- 355 (383)
T 3kax_A 307 ----PTLSVMKPEG-------SFLLWIDCSALN---LSQDERTKLLEEKGKIIVEPGEKYGLG----------------- 355 (383)
T ss_dssp ----TTCEECCCSB-------SSEEEEECGGGC---CCHHHHHHHHHHTSCEECEESGGGCTT-----------------
T ss_pred ----CCceEecCCc-------eEEEEEEccccC---CCHHHHHHHHHhhCCEEeECchhhcCC-----------------
Confidence 6788876542 444456665421 23345777775 799999998765431
Q ss_pred hcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 451 QQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 451 ~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
..+++|+|++ ++++++++++++|++++
T Consensus 356 ----------------~~~~iRi~~~--~~~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 356 ----------------GEEHIGINIG--CPRSVLEEILNRLRHTF 382 (383)
T ss_dssp ----------------CTTEEEEECS--SCHHHHHHHHHHHHHHH
T ss_pred ----------------CCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 1378999998 48999999999998865
No 54
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.92 E-value=3.5e-24 Score=238.99 Aligned_cols=347 Identities=11% Similarity=0.070 Sum_probs=234.8
Q ss_pred CcccCCCcceeeeccccccchhhhhhhhcccc----cchhhHHHHHHHHhhccccCCCC--hhh--hhhhhhhhHHHHHH
Q psy16512 41 PIKTKFGYHIIMVEGKNHLKDICYLDYTGAGV----YSQSQMNQTIEQLKENIFSHPHG--NSV--LSDFCVSEIDQMRT 112 (815)
Q Consensus 41 pv~t~fGyhIi~ved~~~~~~~iyLd~a~~~~----~p~~v~~al~~~l~~~~~~np~s--~~~--~~~~~~~~~~~~r~ 112 (815)
.+...-|.++... ++..|+|..+..+ .++.+.+++.+.+.. +++... .+. .... ..++++
T Consensus 30 ~~~~~~g~~~~~~------~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~g~~~~----~~~l~~ 97 (401)
T 1fc4_A 30 IITSAQQADITVA------DGSHVINFCANNYLGLANHPDLIAAAKAGMDS--HGFGMASVRFICGTQDS----HKELEQ 97 (401)
T ss_dssp CBCSCSSSEEEBT------TSCEEEECCCSCTTSCTTCHHHHHHHHHHHHH--HCSCCCSCHHHHCCBHH----HHHHHH
T ss_pred eeccCCCceEEee------CCccEEEeeccCcccccCCHHHHHHHHHHHHH--hCCCCCCCCcccCCcHH----HHHHHH
Confidence 4445556554332 1233555443322 367788888776643 222221 111 1334 789999
Q ss_pred HHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc--eEEcCchhhhcchhhhh
Q psy16512 113 KILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ--IYSFSVDDARNMLNEFK 189 (815)
Q Consensus 113 ~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v~~~~~~~~~~~~~~~ 189 (815)
.+++++|++ +. +++ +++|+|+..++.++. ++|| |++....|+++.... ...| .+.++. .+.+.+++
T Consensus 98 ~la~~~g~~-~~--i~~-~sGs~a~~~~~~~~~-~~gd~v~~~~~~~~~~~~~~---~~~g~~~~~~~~---~d~~~l~~ 166 (401)
T 1fc4_A 98 KLAAFLGME-DA--ILY-SSCFDANGGLFETLL-GAEDAIISDALNHASIIDGV---RLCKAKRYRYAN---NDMQELEA 166 (401)
T ss_dssp HHHHHHTCS-EE--EEE-SCHHHHHHTTHHHHC-CTTCEEEEETTCCHHHHHHH---HTSCSEEEEECT---TCHHHHHH
T ss_pred HHHHHhCCC-cE--EEe-CChHHHHHHHHHHHc-CCCCEEEEcchhHHHHHHHH---HHcCCceEEECC---CCHHHHHH
Confidence 999999986 32 555 555779999999887 8999 888888887765543 3445 444432 24455555
Q ss_pred hhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC-C--------CCC
Q psy16512 190 ESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-M--------LDL 260 (815)
Q Consensus 190 ~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-~--------~dl 260 (815)
+++.... ...++++|++++++||||.++|+++|.++|+ ++|+++|+|++++.+.. + .++
T Consensus 167 ~l~~~~~-~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~-----------~~~~~li~De~~~~g~~~~~g~~~~~~~~~ 234 (401)
T 1fc4_A 167 RLKEARE-AGARHVLIATDGVFSMDGVIANLKGVCDLAD-----------KYDALVMVDDSHAVGFVGENGRGSHEYCDV 234 (401)
T ss_dssp HHHHHHH-TTCSSEEEEEESEETTTTEECCHHHHHHHHH-----------HTTEEEEEECTTTTTTSSTTSCCHHHHTTC
T ss_pred HHHHhhc-cCCCceEEEEeCCcCCCCCCCCHHHHHHHHH-----------HcCCEEEEECcccccccCCCCCccHHHcCC
Confidence 4431110 0116899999999999999999999999999 89999999999975543 2 333
Q ss_pred CCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 261 KQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 261 ~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
.. +.|+++.|+||+|+++.| |++++++++++.+..... .....++.+...+.++.+
T Consensus 235 ~~-~~di~~~s~sK~~~~~~g-G~~~~~~~~~~~l~~~~~----------------------~~~~~~~~~~~~~~a~~~ 290 (401)
T 1fc4_A 235 MG-RVDIITGTLGKALGGASG-GYTAARKEVVEWLRQRSR----------------------PYLFSNSLAPAIVAASIK 290 (401)
T ss_dssp TT-CCSEEEEESSSTTCSSSC-EEEEECHHHHHHHHHHCH----------------------HHHHSCCCCHHHHHHHHH
T ss_pred Cc-CCcEEEecchhhccCCCC-EEEEcCHHHHHHHHHhCc----------------------CceeCCCCCHHHHHHHHH
Confidence 32 579999999999944666 999998877665532110 001134678888888888
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK 420 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~ 420 (815)
+++.+.......++..++++++.+.|+++ +++++ +. .++++++.+++. .+..++.+.|.++
T Consensus 291 ~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~-~~-------~~~~~~~~~~~~----~~~~~l~~~l~~~ 351 (401)
T 1fc4_A 291 VLEMVEAGSELRDRLWANARQFREQMSAA-------GFTLA-GA-------DHAIIPVMLGDA----VVAQKFARELQKE 351 (401)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHT-------TCCBC-CS-------SSSEEEEEEECH----HHHHHHHHHHHHT
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHc-------CCccc-CC-------CCCEEEEEcCCh----HHHHHHHHHHHHC
Confidence 88877653223388899999999999886 44544 22 378888888631 1233577888888
Q ss_pred CcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 421 KIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 421 gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
||.+++|..|..+. ..+++|++++.+++++++++++++|++++..
T Consensus 352 gi~v~~~~~~~~~~--------------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 396 (401)
T 1fc4_A 352 GIYVTGFFYPVVPK--------------------------------GQARIRTQMSAAHTPEQITRAVEAFTRIGKQ 396 (401)
T ss_dssp TEECCEECTTSSCT--------------------------------TCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CcEEeeecCCCCCC--------------------------------CCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999876543110 1378999999999999999999999998653
No 55
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.92 E-value=1.1e-23 Score=231.86 Aligned_cols=308 Identities=15% Similarity=0.111 Sum_probs=213.0
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-E
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-F 151 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-v 151 (815)
.++.+.+++.+.+.. ....+. .. ..++|+.+++++|+++++ |++|+|+++|+.+++.++ +|| |
T Consensus 38 ~~~~v~~a~~~~~~~-~~~y~~------~~----~~~l~~~la~~~~~~~~~--v~~~~g~~~al~~~~~~~---~gd~v 101 (364)
T 1lc5_A 38 MPVSVKRALIDNLDC-IERYPD------AD----YFHLHQALARHHQVPASW--ILAGNGETESIFTVASGL---KPRRA 101 (364)
T ss_dssp CCHHHHHHHHHTGGG-GGSCCC------TT----CHHHHHHHHHHHTSCGGG--EEEESSHHHHHHHHHHHH---CCSEE
T ss_pred CCHHHHHHHHHHHHH-hhcCCC------CC----HHHHHHHHHHHHCcCHHH--EEECCCHHHHHHHHHHHc---CCCeE
Confidence 456777777665432 111121 12 678999999999998777 999999999999999988 457 8
Q ss_pred EEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC---hHHHHHHh
Q psy16512 152 IYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP---LSWCNTVH 227 (815)
Q Consensus 152 v~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~---l~~I~~l~ 227 (815)
++....|+++.......+... .++.+.++.++. +++.+ +.+.+++++|++++++||||.++| +++|.++|
T Consensus 102 l~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~--l~~~~----~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~ 175 (364)
T 1lc5_A 102 MIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL--TDAIL----EALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRC 175 (364)
T ss_dssp EEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC--CTTHH----HHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred EEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch--hHHHH----HhccCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHh
Confidence 888888877655444332222 556654333333 22222 133467899999999999999999 66677777
Q ss_pred hccccccccccCCCCeEEEEecccccCCC----CCCC-CCCCCcEEEEccccccccCCc--ceEEE-EecccccccCccc
Q psy16512 228 RNHVFKKHFKCSRSNCFVLLDAATYCGSN----MLDL-KQHQPDFISISFYKMFGYPTG--LGALI-VKQKSAHVLNKTF 299 (815)
Q Consensus 228 ~~~~~~~~~~~~~~gi~vivD~a~~~g~~----~~dl-~~~~~D~vv~S~~K~~g~p~G--~G~l~-~~~~~~~~l~~~~ 299 (815)
+ ++|+++|+|++++.+.. .++. ...+.++++.|+||+|| ++| +|+++ .++++++.+.+..
T Consensus 176 ~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~l~~~~ 243 (364)
T 1lc5_A 176 K-----------SLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYA-IPGLRLGYLVNSDDAAMARMRRQQ 243 (364)
T ss_dssp H-----------HHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTT-CTTTCCEEEECCCHHHHHHHHHHS
T ss_pred h-----------hcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhc-CCccceEEEEECCHHHHHHHHHhC
Confidence 7 89999999999875431 1222 33567899999999998 557 69999 8887765553211
Q ss_pred ccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE
Q psy16512 300 YGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE 379 (815)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~ 379 (815)
..++.+..+..++.++++.........++.+++++++.+.|+++ |+++
T Consensus 244 --------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~------~~~~ 291 (364)
T 1lc5_A 244 --------------------------MPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQL------PLLT 291 (364)
T ss_dssp --------------------------CTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTS------TTEE
T ss_pred --------------------------CCCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcC------CCCE
Confidence 12356777777776666542212122277788889999999887 6888
Q ss_pred EcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCc
Q psy16512 380 LYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDD 459 (815)
Q Consensus 380 l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~ 459 (815)
++.+. ++++++.++.. ... +.+.|.++||.+++|..|..
T Consensus 292 ~~~~~--------g~~~~~~~~~~-~~~-----l~~~l~~~gi~v~~g~~~~~--------------------------- 330 (364)
T 1lc5_A 292 VYPGR--------ANYLLLRCERE-DID-----LQRRLLTQRILIRSCANYPG--------------------------- 330 (364)
T ss_dssp ECCCS--------SSEEEEEESCT-TCC-----HHHHHHTTTEECEECTTSTT---------------------------
T ss_pred ECCCC--------CeEEEEECCCc-HHH-----HHHHHHHCCcEEeeCcccCC---------------------------
Confidence 76432 67778877642 222 67778788999998865431
Q ss_pred ccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 460 KDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 460 ~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
...+++|+|++ +.+|+++++++|++++.
T Consensus 331 ------~~~~~iRis~~---~~~~~~~l~~~l~~~~~ 358 (364)
T 1lc5_A 331 ------LDSRYYRVAIR---SAAQNERLLAALRNVLT 358 (364)
T ss_dssp ------CCTTEEEEECC---CHHHHHHHHHHHHHHC-
T ss_pred ------CCCCEEEEEeC---CHHHHHHHHHHHHHHhh
Confidence 11378999987 78999999999998764
No 56
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.92 E-value=5.4e-24 Score=233.73 Aligned_cols=283 Identities=14% Similarity=0.111 Sum_probs=204.4
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCC-c-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEG-S-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARN 183 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~g-d-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~ 183 (815)
..++|+.+++++|+++++ |++|+|+++++.+++.++. ++| | |++..+.|+++.......+... .++.+.+...+
T Consensus 60 ~~~lr~~la~~~~~~~~~--v~~~~G~~~ai~~~~~~~~-~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d 136 (356)
T 1fg7_A 60 PKAVIENYAQYAGVKPEQ--VLVSRGADEGIELLIRAFC-EPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLD 136 (356)
T ss_dssp CHHHHHHHHHHHTSCGGG--EEEESHHHHHHHHHHHHHC-CTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCTTSCCC
T ss_pred HHHHHHHHHHHhCCChHH--EEEcCCHHHHHHHHHHHHh-CCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCCCCCCCC
Confidence 678999999999998877 9999999999999999997 889 8 8888888877665544432222 34444333455
Q ss_pred chhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC---CCCC
Q psy16512 184 MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN---MLDL 260 (815)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~---~~dl 260 (815)
++.+++ .++ ++++|++++++||||.++|.+++.++++ .|+ +|+++|+|++++.... ..++
T Consensus 137 ~~~l~~-------~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~~--------~~~-~~~~li~De~~~~~~~~~~~~~~ 199 (356)
T 1fg7_A 137 LQGISD-------KLD-GVKVVYVCSPNNPTGQLINPQDFRTLLE--------LTR-GKAIVVADEAYIEFCPQASLAGW 199 (356)
T ss_dssp HHHHHT-------SCT-TEEEEEEESSCTTTCCCCCHHHHHHHHH--------HHT-TTCEEEEECTTGGGSGGGCSGGG
T ss_pred HHHHHH-------Hhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHH--------hCC-CCCEEEEEccchhhcCCCcHHHH
Confidence 565554 233 6899999999999999999999999988 455 8999999999874331 1222
Q ss_pred -CCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHH
Q psy16512 261 -KQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIIS 337 (815)
Q Consensus 261 -~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a 337 (815)
...+.++++.|+||+|| ++| +|++++++++++.+.... ...+.|..+..+
T Consensus 200 ~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~l~~~~--------------------------~~~~~~~~~~~a 252 (356)
T 1fg7_A 200 LAEYPHLAILRTLSKAFA-LAGLRCGFTLANEEVINLLMKVI--------------------------APYPLSTPVADI 252 (356)
T ss_dssp TTTCTTEEEEEESSSTTC-CGGGCCEEEEECHHHHHHHHHHS--------------------------CSSCSCHHHHHH
T ss_pred HhhCCCEEEEecchHhhc-CchhhhEEEEeCHHHHHHHHHhc--------------------------CCCCCCHHHHHH
Confidence 33456789999999998 567 799999888766553211 111466666666
Q ss_pred HHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHH
Q psy16512 338 LKYGFDTMEK--KRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQN 415 (815)
Q Consensus 338 l~~al~~l~~--~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~ 415 (815)
+.++++.... .....++.+++++++.+.|+++ +++..+.+. .++++++.++ + ..++.+
T Consensus 253 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~~~-------~~~~~~~~~~--~-----~~~l~~ 312 (356)
T 1fg7_A 253 AAQALSPQGIVAMRERVAQIIAEREYLIAALKEI------PCVEQVFDS-------ETNYILARFK--A-----SSAVFK 312 (356)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHS------TTEEEECCC-------SSSEEEEEET--T-----HHHHHH
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhC------CCceEECCC-------CCeEEEEECC--C-----HHHHHH
Confidence 6666654221 2222377888899999999887 454333332 2678888775 2 235778
Q ss_pred hhhcCCcEecc-CccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 416 LANLKKIQLRT-GCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 416 ~l~~~gI~v~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
.|.++||.+++ |..|.. .+++|+|++ +.+|+++++++|+++
T Consensus 313 ~L~~~gI~v~~~g~~~~~-----------------------------------~~~iRis~~---~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 313 SLWDQGIILRDQNKQPSL-----------------------------------SGCLRITVG---TREESQRVIDALRAE 354 (356)
T ss_dssp HHHHTTEECEECTTSTTC-----------------------------------TTEEEEECC---CHHHHHHHHHHHHTC
T ss_pred HHHHCCEEEEECCCCCCC-----------------------------------CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 88999999998 654321 268999998 689999999999864
No 57
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.92 E-value=2.4e-24 Score=239.19 Aligned_cols=329 Identities=11% Similarity=0.153 Sum_probs=222.6
Q ss_pred hhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC--CCCCceeEEecCCchhhHHH
Q psy16512 63 CYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN--TDSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 63 iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g--~~~~~~~iv~t~g~t~al~~ 139 (815)
+.|..+... ..++.+.+++.+.+....+..+. ...+. .+++++.+++++| +++++ |++|+|+++|+.+
T Consensus 35 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~---~~~~~----~~~l~~~l~~~~g~~~~~~~--v~~~~g~~~a~~~ 105 (391)
T 4dq6_A 35 LPMWVADMDFKAAPCIIDSLKNRLEQEIYGYTT---RPDSY----NESIVNWLYRRHNWKIKSEW--LIYSPGVIPAISL 105 (391)
T ss_dssp EECCSSSCSSCCCHHHHHHHHHHHTTCCCCCBC---CCHHH----HHHHHHHHHHHHCCCCCGGG--EEEESCHHHHHHH
T ss_pred eeccccCCCCCCCHHHHHHHHHHHhCCCCCCCC---CCHHH----HHHHHHHHHHHhCCCCcHHH--eEEcCChHHHHHH
Confidence 344443333 34577888887766542222211 12334 7788889999999 66766 9999999999999
Q ss_pred HHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcC--chh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCC
Q psy16512 140 VSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFS--VDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNF 213 (815)
Q Consensus 140 ~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~--~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~ 213 (815)
++.++. ++|| |++....|+++.......+... .++++ .++ .++++.+++++ .+ +++|++++++||
T Consensus 106 ~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l-------~~-~~~v~i~~p~np 176 (391)
T 4dq6_A 106 LINELT-KANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKI-------KD-VKLFILCNPHNP 176 (391)
T ss_dssp HHHHHS-CTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHC-------TT-EEEEEEESSBTT
T ss_pred HHHHhC-CCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHh-------hc-CCEEEEECCCCC
Confidence 999997 8998 8888888877655444332222 33443 112 25666766644 34 899999999999
Q ss_pred CccccChHH---HHHHhhccccccccccCCCCeEEEEecccccC----CCCCCCCCCCCc-----EEEEccccccccCCc
Q psy16512 214 SGTKYPLSW---CNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG----SNMLDLKQHQPD-----FISISFYKMFGYPTG 281 (815)
Q Consensus 214 tG~~~~l~~---I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g----~~~~dl~~~~~D-----~vv~S~~K~~g~p~G 281 (815)
||.++|.++ |.++|+ ++|+++|+|++++.. ..+.++..+..| +++.|+||++| ++|
T Consensus 177 tG~~~~~~~l~~i~~~~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G 244 (391)
T 4dq6_A 177 VGRVWTKDELKKLGDICL-----------KHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFN-IAG 244 (391)
T ss_dssp TTBCCCHHHHHHHHHHHH-----------HTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHT-CGG
T ss_pred CCcCcCHHHHHHHHHHHH-----------HcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhcc-Ccc
Confidence 999977555 555566 899999999998763 222333333333 88999999998 445
Q ss_pred --ceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHH
Q psy16512 282 --LGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFE 357 (815)
Q Consensus 282 --~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~ 357 (815)
+|++++++ ++.+.+.... ..+..++++..++.++.++++......... ++.++
T Consensus 245 ~r~G~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 301 (391)
T 4dq6_A 245 LQSSYVVLPDEKDYKLLDDAF-----------------------TRIDIKRNNCFSLVATEASYNNGESWLESFLEYLES 301 (391)
T ss_dssp GCCEEEECCSHHHHHHHHHHH-----------------------HHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHH-----------------------HhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 79998886 6655443221 112234677788877777776533222222 78888
Q ss_pred HHHHHHHHHHh-ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC-CcEeccCccCCchhh
Q psy16512 358 LSQYTYFYFKQ-LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK-KIQLRTGCHCNPGSC 435 (815)
Q Consensus 358 l~~~l~~~L~~-l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~-gI~v~~g~~~~~~~~ 435 (815)
+++++.+.|++ + |+++++.+.. +.++++.++... .+..++.+.|.++ ||.+++|..|...
T Consensus 302 ~~~~l~~~l~~~~------~~~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~~~~~-- 363 (391)
T 4dq6_A 302 NIDFAIKYINENM------PKLKVRKPEG-------TYLLWVDFSALG---LSDEELESILVQKGKVALNQGNSFGIG-- 363 (391)
T ss_dssp HHHHHHHHHHHHC------TTSEECCCSB-------SSEEEEECGGGC---CCHHHHHHHHHHTTCEECEEGGGGCTT--
T ss_pred HHHHHHHHHHhhC------CCCEecCCCc-------cEEEEEEhhhcC---CCHHHHHHHHHHhCCEEeeCchhhCCC--
Confidence 99999999987 5 6788876542 444457665311 2334577778776 9999988665421
Q ss_pred hhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 436 QRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 436 ~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
..+++|+|++ ++++++++++++|.+++
T Consensus 364 -------------------------------~~~~iRis~~--~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 364 -------------------------------GSGYQRINLA--CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp -------------------------------CTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred -------------------------------CCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 1378999998 58999999999999875
No 58
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.92 E-value=7.6e-24 Score=243.26 Aligned_cols=358 Identities=13% Similarity=0.071 Sum_probs=233.3
Q ss_pred chhhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHH
Q psy16512 60 KDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 60 ~~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~ 139 (815)
....||++...+..++.+++++....... +.+.. ..........+++++++++++|+++. ..++||+|+|+|+.+
T Consensus 99 ~~~~yl~~~~~~~~~~~v~~~~~~~~~n~---~~~~~-~~~~~~~~le~~~~~~la~~~g~~~~-~~~~~t~ggt~a~~~ 173 (497)
T 2qma_A 99 QHPDCIAHLHTPPLMPAVAAEAMIAALNQ---SMDSW-DQASSATYVEQKVVNWLCDKYDLSEK-ADGIFTSGGTQSNQM 173 (497)
T ss_dssp TSTTBCSSSCCCCBHHHHHHHHHHHHHCC---CTTCG-GGCHHHHHHHHHHHHHHHHHTTCCTT-CEEEEESSHHHHHHH
T ss_pred CCCCeeEeCCCCCcHHHHHHHHHHHhhcc---cccch-hhChHHHHHHHHHHHHHHHHhCCCCC-CCeEEcCCchHHHHH
Confidence 34689999999999999999886655421 22221 11111112255679999999999752 249999999999999
Q ss_pred HHhhhc---c---------CC------Cc--EEEecCCCcchhhHHHHhhc---cc-eEEcCchhhhcchhhhhhhhhhh
Q psy16512 140 VSEYFE---F---------NE------GS--FIYLTDNHTSVLGMRELVKT---NQ-IYSFSVDDARNMLNEFKESQENV 195 (815)
Q Consensus 140 ~~~al~---~---------~~------gd--vv~~~~~h~s~~~~~~~~~~---~g-~v~~~~~~~~~~~~~~~~l~~~~ 195 (815)
++.++. . .+ |+ ++++..+|+++......++. .. .++.+.++.++++.++++|+.
T Consensus 174 al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~-- 251 (497)
T 2qma_A 174 GLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQ-- 251 (497)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHH--
T ss_pred HHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCCCCcCCHHHHHHHHHH--
Confidence 888741 0 12 45 77777899998776666543 12 566666667788888876641
Q ss_pred hhcCCC--ccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCC----CCCC-CCcEE
Q psy16512 196 ENMRHS--NSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLD----LKQH-QPDFI 268 (815)
Q Consensus 196 ~~~~~~--t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~d----l~~~-~~D~v 268 (815)
..... +.+|++++++|+||.+.|+++|.++|+ ++|+++|+|++++.+..+.+ +... .+|++
T Consensus 252 -~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~-----------~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i 319 (497)
T 2qma_A 252 -AKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAV-----------KHDMWMHVDGAYGGALILSSHKSRLKGVERAHSI 319 (497)
T ss_dssp -HHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH-----------HHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEE
T ss_pred -HHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHH-----------HcCCEEEEehhhhHHHHhCcchHhhcCcccCCEE
Confidence 11122 448999999999999999999999999 89999999999988776554 2233 68999
Q ss_pred EEccccccccCCcceEEEEeccc-ccccCcccccCceEEEEecC-CcccccccCccccccCCCCChhHHHHHHHHHHHHH
Q psy16512 269 SISFYKMFGYPTGLGALIVKQKS-AHVLNKTFYGGGTVKISMAN-ENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME 346 (815)
Q Consensus 269 v~S~~K~~g~p~G~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~ 346 (815)
++|+||++++|.|+|+++++++. ++.+. ....+....... .+.. ....+ ++..+. ..++..+++.+.
T Consensus 320 ~~s~hK~l~~p~~~G~l~~~~~~~~~~~~---~~~~yl~~~~~~~~~~~------~~~~~-~~r~~~-al~~~~~l~~lg 388 (497)
T 2qma_A 320 SVDFHKLFYQTISCGALLVNDKSNFKFLL---HHADYLNREHDELPNLV------DKSIA-TTKRFD-ALKVFMTMQNVG 388 (497)
T ss_dssp EEETTTTTCCCSSCEEEEESCGGGGGGGC---C--------------------------C-CSCCCT-HHHHHHHHHHTC
T ss_pred EEcchhccCCCcceEEEEEeCHHHHHHhc---CCchhcCCccccCCCcc------ccCCC-CCCchh-HHHHHHHHHHhC
Confidence 99999999889899999998764 32221 111110000000 0000 00000 111111 223444555443
Q ss_pred hhh--hhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccC--HHHHHHhhhcCCc
Q psy16512 347 KKR--KSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYG--YSEVQNLANLKKI 422 (815)
Q Consensus 347 ~~~--~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~--~~~v~~~l~~~gI 422 (815)
..+ ...++..++++++.+.|+++ |+++++.+.. .++++|.+..... ..+ ...+.+.+.+.|+
T Consensus 389 ~~g~~~~~~~~~~~a~~l~~~L~~~------~~~~~~~~~~-------~~~v~f~~~~~~~-~~~~l~~~l~~~l~~~G~ 454 (497)
T 2qma_A 389 PKALGDMYDHLLAQTLEVADMIRTN------DQFELLAEPS-------LSTVLFRATHETA-DLDELNKALRLEALTRGI 454 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC------TTEEECSCCS-------SSEEEEEECCSSS-CHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC------CCeEEEcCCC-------ceEEEEEEcCCcc-CHHHHHHHHHHHHHhCCC
Confidence 222 12288899999999999988 7899875432 6799998864321 110 1235566667787
Q ss_pred EeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEec-cCCCCHHHHHHHHHHHHHHHh
Q psy16512 423 QLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISY-GHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 423 ~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~-g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+.++... .+ .+++|+++ ++++|++|+++++++|++++.
T Consensus 455 ~~~~~~~~---------------------------------~g--~~~lRis~~~~~~t~edi~~~~~~l~~~~~ 494 (497)
T 2qma_A 455 AVLGETIV---------------------------------DG--KTALKFTILNPCLTTSDFESLLSKINMLAV 494 (497)
T ss_dssp CBCEEEEE---------------------------------TT--EEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEeeEE---------------------------------CC--EEEEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 66432110 01 37899998 889999999999999998764
No 59
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.92 E-value=8.3e-25 Score=237.49 Aligned_cols=304 Identities=14% Similarity=0.084 Sum_probs=199.9
Q ss_pred HHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHH-HHhhccc--eEEcCchhhhcc
Q psy16512 109 QMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMR-ELVKTNQ--IYSFSVDDARNM 184 (815)
Q Consensus 109 ~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~-~~~~~~g--~v~~~~~~~~~~ 184 (815)
++++.+++++|++ +. +++++| ++|+.+++.++. ++|| ++++..+|+++.... ..++..| ...++. .++
T Consensus 2 ~l~~~la~~~g~~-~~--i~~~sG-~~a~~~~~~~~~-~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~d~ 73 (331)
T 1pff_A 2 ALEGKIAKLEHAE-AC--AATASG-MGAIAASVWTFL-KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM---AVP 73 (331)
T ss_dssp HHHHHHHHHHTCS-EE--EEESSH-HHHHHHHHHHHC-CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT---TST
T ss_pred hHHHHHHHHhCCC-eE--EEeCCh-HHHHHHHHHHhc-CCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC---CCH
Confidence 5789999999986 32 566555 899999999886 8898 999999998876543 3244455 333332 344
Q ss_pred hhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCC-CCeEEEEecccccCCCCCCCCCC
Q psy16512 185 LNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSR-SNCFVLLDAATYCGSNMLDLKQH 263 (815)
Q Consensus 185 ~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~-~gi~vivD~a~~~g~~~~dl~~~ 263 (815)
+.+++ .+++++++|++++++||||.+.|+++|.++|+ + +|+++++|++++.+....++ .+
T Consensus 74 ~~l~~-------~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~-----------~~~~~~li~D~a~~~~~~~~~~-~~ 134 (331)
T 1pff_A 74 GNIEK-------HLKPNTRIVYFETPANPTLKVIDIEDAVKQAR-----------KQKDILVIVDNTFASPILTNPL-DL 134 (331)
T ss_dssp THHHH-------TCCTTEEEEEEESSCTTTCCCCCHHHHHHHHT-----------TSSSCEEEEECTTTHHHHCCGG-GG
T ss_pred HHHHH-------hhcCCCeEEEEECCCCCcCcccCHHHHHHHHh-----------hhcCCEEEEECCCcccccCChh-hc
Confidence 45544 33467999999999999999999999999999 8 99999999999887643334 46
Q ss_pred CCcEEEEccccccccCCc--ceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 264 QPDFISISFYKMFGYPTG--LGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 264 ~~D~vv~S~~K~~g~p~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
++|+++.|+||+|++|.+ .|++++++ ++++.+++...++ ..++.+....+++..
T Consensus 135 ~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~~~~~~~~~~~ 191 (331)
T 1pff_A 135 GVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDI-----------------------TGAIISPHDAWLITR 191 (331)
T ss_dssp TCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCC-----------------------CCCCCCHHHHHHHHH
T ss_pred CCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhh-----------------------cCCCCCHHHHHHHHc
Confidence 799999999999997766 79999998 7766554432110 123455555555555
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhcc------c--cCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHH
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLS------Y--SNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSE 412 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~------~--~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~ 412 (815)
+++.+... .++.....+.+.+.+++.. + ....|+++++.+.. ...+++++|.+. + ..+
T Consensus 192 ~l~~~~~~---~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~--~-----~~~ 257 (331)
T 1pff_A 192 GTLTLDMR---VKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQM----KMFGSMIAFDVD--G-----LEK 257 (331)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHC----SSCCSEEEEECS--S-----HHH
T ss_pred CcchHHHH---HHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhC----CCCceEEEEEEC--C-----HHH
Confidence 55543321 2333444444445554331 0 00112333332211 235789998875 1 235
Q ss_pred HHHhhhcCCcEeccC---------ccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHH
Q psy16512 413 VQNLANLKKIQLRTG---------CHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDD 483 (815)
Q Consensus 413 v~~~l~~~gI~v~~g---------~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ed 483 (815)
+.+.|.++||.++.. ++|..+.. ..+... .+..+ |...+++|+|++.++++++
T Consensus 258 ~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~---~~~~~~-~~~~~--------------g~~~~~iRis~~~~~t~~~ 319 (331)
T 1pff_A 258 AKKVLDNCHVVSLAVSLGGPESLIQHPASMTH---AGVPKE-EREAA--------------GLTDNLIRLSVGCENVQDI 319 (331)
T ss_dssp HHHHHHTCSSSEECSSCCSSSCEEECHHHHTS---TTSCHH-HHHHT--------------TCCTTEEEEECCSSCHHHH
T ss_pred HHHHHHhCCCceeccCCCCcceeeecchhhcc---cccCHH-HHHhc--------------CCCCCeEEEEEecCCHHHH
Confidence 888899999977654 24432211 011111 11111 2334899999999999999
Q ss_pred HHHHHHHHHHH
Q psy16512 484 VKYFLSFLNQY 494 (815)
Q Consensus 484 i~~lv~~L~~~ 494 (815)
+++++++|+++
T Consensus 320 i~~l~~~l~~~ 330 (331)
T 1pff_A 320 IDDLKQALDLV 330 (331)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999999764
No 60
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.92 E-value=3.8e-24 Score=237.68 Aligned_cols=331 Identities=12% Similarity=0.079 Sum_probs=222.2
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc----CCCCCcee-EEecCCchh
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF----NTDSDHYS-VIFTSGATS 135 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g~~~~~~~-iv~t~g~t~ 135 (815)
.++|+.+... ..++.+.+++.+.+.......+. ... ..++|+.+++++ |.+.+..+ |++|+|+++
T Consensus 28 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-----~~g----~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~ 98 (389)
T 1gd9_A 28 VISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGP-----NIG----LLELREAIAEKLKKQNGIEADPKTEIMVLLGANQ 98 (389)
T ss_dssp CEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCC-----TTC----CHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTH
T ss_pred eEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCC-----CCC----cHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHH
Confidence 3455554443 24567777777666432111111 122 567778888877 85322225 999999999
Q ss_pred hHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh--hhcchhhhhhhhhhhhhcCCCccEEEEeccc
Q psy16512 136 AIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD--ARNMLNEFKESQENVENMRHSNSLFVYPAES 211 (815)
Q Consensus 136 al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~ 211 (815)
|+.+++.++. ++|| |++....|+++.......+... .++.+.++ .++++.+++++ .+++++|++++++
T Consensus 99 a~~~~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l-------~~~~~~v~~~~~~ 170 (389)
T 1gd9_A 99 AFLMGLSAFL-KDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYV-------TDKTRALIINSPC 170 (389)
T ss_dssp HHHHHHTTTC-CTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHC-------CTTEEEEEEESSC
T ss_pred HHHHHHHHhC-CCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhc-------CcCceEEEEECCC
Confidence 9999999997 8898 8899999988766554443332 56666432 34666666543 3578999999999
Q ss_pred CCCccccC---hHHHHHHhhccccccccccCCCCeEEEEecccccCCC----CCCCCC----CCCcEEEEccccccccCC
Q psy16512 212 NFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN----MLDLKQ----HQPDFISISFYKMFGYPT 280 (815)
Q Consensus 212 n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~----~~dl~~----~~~D~vv~S~~K~~g~p~ 280 (815)
||||.++| +++|.++|+ ++|+++|+|++++.+.. +.++.. .+.|+++.|+||+|| ++
T Consensus 171 nptG~~~~~~~l~~l~~~~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~ 238 (389)
T 1gd9_A 171 NPTGAVLTKKDLEEIADFVV-----------EHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFA-MT 238 (389)
T ss_dssp TTTCCCCCHHHHHHHHHHHH-----------HTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTT-CG
T ss_pred CCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcC-Cc
Confidence 99999997 556666776 89999999999876542 222322 346899999999998 66
Q ss_pred c--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHh--hhhhH-HHH
Q psy16512 281 G--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK--KRKSF-TNA 355 (815)
Q Consensus 281 G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~--~~~~~-~~~ 355 (815)
| +|++++++++++.+.+... ...++.+.....++.++++.... ....+ ++.
T Consensus 239 G~r~G~~~~~~~~~~~l~~~~~------------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 294 (389)
T 1gd9_A 239 GWRLGFVAAPSWIIERMVKFQM------------------------YNATCPVTFIQYAAAKALKDERSWKAVEEMRKEY 294 (389)
T ss_dssp GGCCEEEECCHHHHHHHHHHHT------------------------TTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccceEEEEECHHHHHHHHHHHh------------------------hhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 7 6999998877665532211 11235566677777667664332 11222 778
Q ss_pred HHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhh-cCCcEeccCccCCchh
Q psy16512 356 FELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN-LKKIQLRTGCHCNPGS 434 (815)
Q Consensus 356 ~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~-~~gI~v~~g~~~~~~~ 434 (815)
.++++++.+.|+++ +++++.+.. +.++++.++.. + .+..++.+.|. ++||.+++|..|...
T Consensus 295 ~~~~~~l~~~L~~~-------g~~~~~~~~-------~~~~~~~~~~~-~--~~~~~~~~~l~~~~gi~v~~g~~~~~~- 356 (389)
T 1gd9_A 295 DRRRKLVWKRLNEM-------GLPTVKPKG-------AFYIFPRIRDT-G--LTSKKFSELMLKEARVAVVPGSAFGKA- 356 (389)
T ss_dssp HHHHHHHHHHHHHT-------TCCCCCCCB-------TTEECCBCGGG-T--CCHHHHHHHHHHHTCEECEEGGGGCGG-
T ss_pred HHHHHHHHHHHHHc-------CCeecCCCe-------eeEEEEeccCC-C--CCHHHHHHHHHHhCCEEEeCchhhCCC-
Confidence 88899999999876 455544321 44555565421 1 23345777776 899999988655421
Q ss_pred hhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 435 CQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 435 ~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
..+++|+|++. ++++++++++.|.+++.+
T Consensus 357 --------------------------------~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 357 --------------------------------GEGYVRISYAT--AYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp --------------------------------GTTBEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 03789999985 899999999999998754
No 61
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.92 E-value=7.1e-24 Score=235.06 Aligned_cols=340 Identities=13% Similarity=0.114 Sum_probs=229.4
Q ss_pred ccCCCcceeeeccccccchhhhhhhhcc---c-ccchhhHHHHHHHHhhccccCCCChh--hhhhhhhhhHHHHHHHHHh
Q psy16512 43 KTKFGYHIIMVEGKNHLKDICYLDYTGA---G-VYSQSQMNQTIEQLKENIFSHPHGNS--VLSDFCVSEIDQMRTKILQ 116 (815)
Q Consensus 43 ~t~fGyhIi~ved~~~~~~~iyLd~a~~---~-~~p~~v~~al~~~l~~~~~~np~s~~--~~~~~~~~~~~~~r~~la~ 116 (815)
...-|.++. . ++..|+|.... + ..++.+.+++.+.+......++.+.+ ..... ..++++.+++
T Consensus 27 ~~~~g~~~~-~------~g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~----~~~l~~~la~ 95 (384)
T 1bs0_A 27 AQGAGRWLV-A------DDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVV----HQALEEELAE 95 (384)
T ss_dssp SBCSSSEEE-E------TTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHH----HHHHHHHHHH
T ss_pred cCCCCceEE-E------CCceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHH----HHHHHHHHHH
Confidence 445565544 1 23345565543 2 35677888877766542222222111 22234 7899999999
Q ss_pred HcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc--eEEcCchhhhcchhhhhhhhh
Q psy16512 117 YFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ--IYSFSVDDARNMLNEFKESQE 193 (815)
Q Consensus 117 ~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v~~~~~~~~~~~~~~~~l~~ 193 (815)
++|++ + .++++++++|+..++.++. ++|| |++....|+++...... .| .+.++. .+.+.++++++
T Consensus 96 ~~g~~-~---~i~~~sGt~a~~~~~~~~~-~~gd~v~~~~~~~~~~~~~~~~---~g~~~~~~~~---~d~~~l~~~l~- 163 (384)
T 1bs0_A 96 WLGYS-R---ALLFISGFAANQAVIAAMM-AKEDRIAADRLSHASLLEAASL---SPSQLRRFAH---NDVTHLARLLA- 163 (384)
T ss_dssp HHTCS-E---EEEESCHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHT---SSSEEEEECT---TCHHHHHHHHH-
T ss_pred HhCCC-c---EEEeCCcHHHHHHHHHHhC-CCCcEEEEcccccHHHHHHHHH---cCCCEEEeCC---CCHHHHHHHHH-
Confidence 99985 2 4555555899999999987 8999 77888888876554443 34 334432 34455554442
Q ss_pred hhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC---CC---CCCCCCcE
Q psy16512 194 NVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM---LD---LKQHQPDF 267 (815)
Q Consensus 194 ~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~---~d---l~~~~~D~ 267 (815)
...+++++|++++++||||.++|+++|.++|+ ++|+++|+|++++.+... .. .-..++|+
T Consensus 164 ---~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di 229 (384)
T 1bs0_A 164 ---SPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQ-----------QHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPEL 229 (384)
T ss_dssp ---SCCSSCEEEEEESBCTTTCCBCCHHHHHHHHH-----------HTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSE
T ss_pred ---hcCCCCeEEEEeCCCCCCCCccCHHHHHHHHH-----------HcCcEEEEECCcccceecCCCCchHHhcCCCCcE
Confidence 11124789999999999999999999999999 899999999999766421 11 11135899
Q ss_pred EEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHh
Q psy16512 268 ISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK 347 (815)
Q Consensus 268 vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~ 347 (815)
++.|+||+++ |+| |++++++++++.+...... ....++.+...+.++.++++.+..
T Consensus 230 ~~~s~sK~~~-~~G-G~~~~~~~~~~~l~~~~~~----------------------~~~~~~~~~~~~~~~~~al~~~~~ 285 (384)
T 1bs0_A 230 LVVTFGKGFG-VSG-AAVLCSSTVADYLLQFARH----------------------LIYSTSMPPAQAQALRASLAVIRS 285 (384)
T ss_dssp EEEESSSTTS-SCC-EEEEECHHHHHHHHHHCHH----------------------HHSSBCCCHHHHHHHHHHHHHHHS
T ss_pred EEeeccchhh-ccC-cEEEeCHHHHHHHHHhchh----------------------hhcCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999 878 9999988776654321100 011225677788888888887763
Q ss_pred --hhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEec
Q psy16512 348 --KRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLR 425 (815)
Q Consensus 348 --~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~ 425 (815)
.....++.+++++++.+.|+++ ++++..+ .++++++.++.. .+..++.+.|.++||.++
T Consensus 286 ~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~--------~~~~~~~~~~~~----~~~~~l~~~l~~~gi~v~ 346 (384)
T 1bs0_A 286 DEGDARREKLAALITRFRAGVQDL-------PFTLADS--------CSAIQPLIVGDN----SRALQLAEKLRQQGCWVT 346 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS-------SCEECSC--------CSSBCCEEEESH----HHHHHHHHHHHHTTEECC
T ss_pred cccHHHHHHHHHHHHHHHHHHHhc-------CCcccCC--------CCCEEEEEeCCH----HHHHHHHHHHHHCCcEEE
Confidence 2223388899999999999886 4666532 256777777521 123357788888899998
Q ss_pred cCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 426 TGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 426 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
+|..+..+ ...+++|++++.+++++++++++++|+++
T Consensus 347 ~~~~~~~~--------------------------------~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 347 AIRPPTVP--------------------------------AGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp EECTTSSC--------------------------------TTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred eecCCCCC--------------------------------CCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 87542110 01378999999999999999999999874
No 62
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.92 E-value=2e-24 Score=238.40 Aligned_cols=317 Identities=14% Similarity=0.108 Sum_probs=218.7
Q ss_pred hhhhhhhcccc-cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC------CCCCceeEEecCCch
Q psy16512 62 ICYLDYTGAGV-YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN------TDSDHYSVIFTSGAT 134 (815)
Q Consensus 62 ~iyLd~a~~~~-~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g------~~~~~~~iv~t~g~t 134 (815)
.++|+.+.... .++.+.+++.+.+.......+. ... ..++|+.++++++ +++++ |++|+|++
T Consensus 31 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-----~~~----~~~l~~~la~~~~~~~g~~~~~~~--v~~~~g~~ 99 (370)
T 2z61_A 31 VIHLEIGEPDFNTPKPIVDEGIKSLKEGKTHYTD-----SRG----ILELREKISELYKDKYKADIIPDN--IIITGGSS 99 (370)
T ss_dssp CEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCC-----TTC----CHHHHHHHHHHHHHHSSCCCCGGG--EEEESSHH
T ss_pred EEEccCCCCCCCCCHHHHHHHHHHHHcCccCCCC-----CCC----CHHHHHHHHHHHHHHhCCCCChhh--EEECCChH
Confidence 34555544432 4567777776666432111111 122 5678888888774 56666 99999999
Q ss_pred hhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc--eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEeccc
Q psy16512 135 SAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ--IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAES 211 (815)
Q Consensus 135 ~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~ 211 (815)
+|+.+++.++. ++|| |++....|+++...... .| .+.++ .+++.+++++ .+++++|++++++
T Consensus 100 ~a~~~~~~~~~-~~gd~vl~~~p~~~~~~~~~~~---~g~~~~~v~----~d~~~l~~~l-------~~~~~~v~~~~p~ 164 (370)
T 2z61_A 100 LGLFFALSSII-DDGDEVLIQNPCYPCYKNFIRF---LGAKPVFCD----FTVESLEEAL-------SDKTKAIIINSPS 164 (370)
T ss_dssp HHHHHHHHHHC-CTTCEEEEESSCCTHHHHHHHH---TTCEEEEEC----SSHHHHHHHC-------CSSEEEEEEESSC
T ss_pred HHHHHHHHHhc-CCCCEEEEeCCCchhHHHHHHH---cCCEEEEeC----CCHHHHHHhc-------ccCceEEEEcCCC
Confidence 99999999997 8898 88999888877654433 44 33333 4555555433 3578999999999
Q ss_pred CCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC---CCCCCC----CCCcEEEEccccccccCCc--c
Q psy16512 212 NFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN---MLDLKQ----HQPDFISISFYKMFGYPTG--L 282 (815)
Q Consensus 212 n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~---~~dl~~----~~~D~vv~S~~K~~g~p~G--~ 282 (815)
||||.++|++ |.++|+ ++|+++|+|++++.+.. +.++.. .+.|+++.|+||+|| ++| +
T Consensus 165 nptG~~~~~~-l~~~~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~ 231 (370)
T 2z61_A 165 NPLGEVIDRE-IYEFAY-----------ENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYA-MTGWRI 231 (370)
T ss_dssp TTTCCCCCHH-HHHHHH-----------HHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTT-CGGGCC
T ss_pred CCcCcccCHH-HHHHHH-----------HcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccC-CccceE
Confidence 9999999999 999999 89999999999876532 223322 357899999999998 667 8
Q ss_pred eEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH-HHhhhhh-HHHHHHHHH
Q psy16512 283 GALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT-MEKKRKS-FTNAFELSQ 360 (815)
Q Consensus 283 G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~-l~~~~~~-~~~~~~l~~ 360 (815)
|++++++++++.+.... ....++.+.....++.++++. ....... .+++.++++
T Consensus 232 G~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 287 (370)
T 2z61_A 232 GYVISNDEIIEAILKLQ------------------------QNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRR 287 (370)
T ss_dssp EEEECCHHHHHHHHHHH------------------------HHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHH------------------------hhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 99999987766553321 111235677777777677654 2222122 277888899
Q ss_pred HHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhh-cCCcEeccCccCCchhhhhhc
Q psy16512 361 YTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN-LKKIQLRTGCHCNPGSCQRFL 439 (815)
Q Consensus 361 ~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~-~~gI~v~~g~~~~~~~~~~~~ 439 (815)
++.+.|+++ +++++.+.. +.++++.++. +..++.+.|. ++||.+++|..|...
T Consensus 288 ~l~~~L~~~-------g~~~~~~~~-------~~~~~~~~~~------~~~~~~~~l~~~~gi~v~~g~~f~~~------ 341 (370)
T 2z61_A 288 LVLKYVKDF-------GWEVNNPIG-------AYYVFPNIGE------DGREFAYKLLKEKFVALTPGIGFGSK------ 341 (370)
T ss_dssp HHHHHHHHT-------TCBCCCCCB-------TTEECCBCSS------CHHHHHHHHHHHHCEECEEGGGGCGG------
T ss_pred HHHHHHHHc-------CCeecCCCc-------ceEEEEecCC------CHHHHHHHHHHhCCEEEeCchhhCCC------
Confidence 999999876 455543321 4455555543 2335777775 789999988655320
Q ss_pred CCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 440 GLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 440 g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
..+++|++++ +++++++++++.|.+++.
T Consensus 342 ---------------------------~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 342 ---------------------------GKNYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp ---------------------------GSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred ---------------------------CCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 0378999999 689999999999998764
No 63
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.92 E-value=1e-23 Score=238.08 Aligned_cols=347 Identities=10% Similarity=0.004 Sum_probs=230.3
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhhcc-ccCCCChhhhhhhhhhhHHHHHHHHHhHcC------CCCCceeEEecCCc
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKENI-FSHPHGNSVLSDFCVSEIDQMRTKILQYFN------TDSDHYSVIFTSGA 133 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~~~-~~np~s~~~~~~~~~~~~~~~r~~la~~~g------~~~~~~~iv~t~g~ 133 (815)
.+.|..+... ..++.+.+++.+.+.... ...+. ... ..++|+.++++++ +++++ |++|+|+
T Consensus 46 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-----~~g----~~~lr~~la~~~~~~~g~~~~~~~--i~~t~g~ 114 (437)
T 3g0t_A 46 FCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPN-----LDG----LPELKQEASRFAKLFVNIDIPARA--CVPTVGS 114 (437)
T ss_dssp CEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCC-----TTC----CHHHHHHHHHHHHHHHCCCCCGGG--EEEESHH
T ss_pred EEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCC-----CCC----hHHHHHHHHHHHHHhhCCCCCccc--EEEeCCH
Confidence 3444444433 345777777777665322 22221 112 5678888888877 56666 9999999
Q ss_pred hhhHHHHHhhhcc-CCCc---EEEecCCCcchhhHHHHhhccc-eEEcCchh-hhcchhhhhhhhhhhhhcCCCccEEEE
Q psy16512 134 TSAIKTVSEYFEF-NEGS---FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD-ARNMLNEFKESQENVENMRHSNSLFVY 207 (815)
Q Consensus 134 t~al~~~~~al~~-~~gd---vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~-~~~~~~~~~~l~~~~~~~~~~t~lv~i 207 (815)
|+|+.+++.++.+ ++|| |++...+|+++.......+... .++++.++ .++++.++++++ ++++++|++
T Consensus 115 t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~------~~~~~~v~l 188 (437)
T 3g0t_A 115 MQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQ------TGQFCSIIY 188 (437)
T ss_dssp HHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHT------TTCCCEEEE
T ss_pred HHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHh------cCCceEEEE
Confidence 9999999999852 5666 7888888877665555444333 66665433 367777766442 467999999
Q ss_pred ecccCCCccccChHH---HHHHhhccccccccccCCCCeEEEEecccccCC----CC--------CCCCC-CCCcEEEEc
Q psy16512 208 PAESNFSGTKYPLSW---CNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS----NM--------LDLKQ-HQPDFISIS 271 (815)
Q Consensus 208 ~~~~n~tG~~~~l~~---I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~----~~--------~dl~~-~~~D~vv~S 271 (815)
++++||||.++|.++ |.++|+ ++|+++|+|++++... .+ .++.. .+.++++.|
T Consensus 189 ~~p~nptG~~~~~~~l~~i~~~a~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 257 (437)
T 3g0t_A 189 SNPNNPTWQCMTDEELRIIGELAT-----------KHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALS 257 (437)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHH-----------HTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEE
T ss_pred eCCCCCCCCcCCHHHHHHHHHHHH-----------HCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEc
Confidence 999999999999665 556666 8999999999987422 12 12222 456799999
Q ss_pred cccccccCCc--ceEEEEeccccc-ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHh-
Q psy16512 272 FYKMFGYPTG--LGALIVKQKSAH-VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK- 347 (815)
Q Consensus 272 ~~K~~g~p~G--~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~- 347 (815)
+||++| ++| +|++++++++++ .+.......+... . .+. .-........++.+..+..++.++++....
T Consensus 258 ~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~--~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 329 (437)
T 3g0t_A 258 SSKAFS-YAGQRIGVLMISGKLYEREYPDLEESFGRLR----F-GEA--LSSSALYALSSGATHSAQWGMAAMLKACNDG 329 (437)
T ss_dssp STTTTS-CGGGCCEEEEECHHHHHCBCGGGHHHHSCSB----H-HHH--HHTTHHHHHHSSSCHHHHHHHHHHHHHHHTT
T ss_pred CccCCC-CccceeEEEEECHHHhhhhhhcccccccccc----h-hHH--HHHHHHhhhcCCCCHHHHHHHHHHHhCcHhH
Confidence 999998 556 899999988766 5211110000000 0 000 000001222456777888888888876553
Q ss_pred ---hhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEc------CC-CCCCCCCcccceEEEEEecCCCCccCHHHHHHhh
Q psy16512 348 ---KRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELY------HD-TDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA 417 (815)
Q Consensus 348 ---~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~------~~-~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l 417 (815)
.....+++.++++++.+.|+++ +++++ .+ . .+.++++.+++ .+..++.+.|
T Consensus 330 ~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~~~~~~-------~~~~~~~~~~~-----~~~~~l~~~L 390 (437)
T 3g0t_A 330 EYNFRDSVIEYGRKARIMKKMFLDN-------GFNIVYDKDGNEPLA-------DGFYFTVGYKG-----MDSSKLIEKF 390 (437)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTT-------TEEESSCEETTEECC-------SSSEEEEEETT-----CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-------CCEEeccccCCCCCc-------eeEEEEEecCC-----CCHHHHHHHH
Confidence 2222388899999999999887 67777 23 2 26778888763 2334688888
Q ss_pred hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 418 NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 418 ~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.++||.+++|..|... ..+++|+|++. .+++++++++++|++++.+
T Consensus 391 ~~~gi~v~~~~~~~~~---------------------------------~~~~iRis~~~-~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 391 VRYGMCAITLKTTGSK---------------------------------RNEAMRICTSL-LPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp HHTTEECEESTTTTCC---------------------------------CTTCEEEECSS-SCGGGHHHHHHHHHHHHHH
T ss_pred HHcCeEEeeccccCCC---------------------------------CCCEEEEEEec-CCHHHHHHHHHHHHHHHhc
Confidence 8899999988665321 12679999994 4899999999999997654
No 64
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.9e-24 Score=244.27 Aligned_cols=297 Identities=11% Similarity=0.060 Sum_probs=221.8
Q ss_pred HHHHHHHHHhHcCCC--CCceeEEecCCchhhHHHHHhhhcc----CCC---c-EEEecCCCcchhhHHHHhhccc-eEE
Q psy16512 107 IDQMRTKILQYFNTD--SDHYSVIFTSGATSAIKTVSEYFEF----NEG---S-FIYLTDNHTSVLGMRELVKTNQ-IYS 175 (815)
Q Consensus 107 ~~~~r~~la~~~g~~--~~~~~iv~t~g~t~al~~~~~al~~----~~g---d-vv~~~~~h~s~~~~~~~~~~~g-~v~ 175 (815)
.+++++++++++|++ ++. +++|+|+|+|+.+++.++.. .+| + |+++...|+++.......+... .++
T Consensus 109 ~~~~~~~la~~~g~~~~~~~--~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~ 186 (497)
T 3mc6_A 109 ESEVVSMVLRMFNAPSDTGC--GTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAYYFGMKLRHVE 186 (497)
T ss_dssp HHHHHHHHHHHTTCCTTTCC--EEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHHHHHSCCEEEEEC
T ss_pred HHHHHHHHHHHhCCCCCCCe--EEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHHHHHcCCeEEEEe
Confidence 678999999999998 444 99999999999999998851 145 5 8899999988766555543222 556
Q ss_pred cCc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccC
Q psy16512 176 FSV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG 254 (815)
Q Consensus 176 ~~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g 254 (815)
++. ++.++++++++++ .+++++|++++++||||.+.|+++|.++|+ ++|+++|+|++++.+
T Consensus 187 ~~~~~~~~d~~~l~~~i-------~~~~~~v~~~~p~nptG~~~~l~~i~~la~-----------~~g~~livD~a~~~~ 248 (497)
T 3mc6_A 187 LDPTTYQVDLGKVKKFI-------NKNTVLLVGSAPNFPHGIADDIEGLGKIAQ-----------KYKLPLHVDSCLGSF 248 (497)
T ss_dssp BCTTTCSBCTTTTGGGC-------CSSEEEEEEETTCTTTCCCCSCTTTTTHHH-----------HTTCCEEEETTTTHH
T ss_pred cCcccCcCCHHHHHHHH-------hhCCEEEEEECCCCCCCcCCCHHHHHHHHH-----------HhCCEEEEECcchhh
Confidence 665 4567788777644 467999999999999999999999999999 899999999998732
Q ss_pred C-----------C-CCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCc----ccccCceEEEEecCCcccccc
Q psy16512 255 S-----------N-MLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNK----TFYGGGTVKISMANENFHIKK 318 (815)
Q Consensus 255 ~-----------~-~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~----~~~g~~~~~~~~~~~~~~~~~ 318 (815)
. . +++....++|+++.|+||++++|.|+|+++++++.+..... .+.++..
T Consensus 249 ~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 314 (497)
T 3mc6_A 249 IVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLY-------------- 314 (497)
T ss_dssp HHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTSCB--------------
T ss_pred hhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCCCc--------------
Confidence 2 2 35566678999999999997668899999998876543321 1111110
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhhhh-hH-HHHHHHHHHHHHHHHh-ccccCCCCcEEEcCCCCCCCCCcccce
Q psy16512 319 DGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK-SF-TNAFELSQYTYFYFKQ-LSYSNGQPLVELYHDTDYGESKYQGNI 395 (815)
Q Consensus 319 ~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~-~~-~~~~~l~~~l~~~L~~-l~~~~~~p~~~l~~~~~~~~~~~~~~i 395 (815)
......|+.+...++++.++++.+...+. .+ ++..++++++.+.|++ + |+++++.+. .+++
T Consensus 315 ---~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~------~g~~~~~~~-------~~~~ 378 (497)
T 3mc6_A 315 ---GSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENI------PDLDIMGNP-------RYSV 378 (497)
T ss_dssp ---CCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC------TTCEECSCC-------CSSE
T ss_pred ---CCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC------CCEEEecCC-------CeeE
Confidence 01122456666667778888887765542 22 8889999999999998 6 788888653 2678
Q ss_pred EEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEec
Q psy16512 396 VNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISY 475 (815)
Q Consensus 396 ~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~ 475 (815)
+.|...+. +..++.+.|.++||.++.+.. ...+|+++
T Consensus 379 v~~~~~~~-----~~~~l~~~L~~~Gi~v~~~~~--------------------------------------~~~~ri~~ 415 (497)
T 3mc6_A 379 ISFSSKTL-----NIHELSDRLSKKGWHFNALQK--------------------------------------PVALHMAF 415 (497)
T ss_dssp EEEECTTT-----THHHHHHHHHTTTCBCEECCS--------------------------------------SCCEEEEC
T ss_pred EEEeCCCC-----CHHHHHHHHHhCCEEEecCCC--------------------------------------CCeEEEEE
Confidence 88875432 334688999999998865421 24589998
Q ss_pred cCCCCHHHHHHHHHHHHHHHhh
Q psy16512 476 GHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 476 g~~~t~edi~~lv~~L~~~~~~ 497 (815)
. ..+++++++++++|++++.+
T Consensus 416 ~-~~t~e~i~~~~~~L~~~l~~ 436 (497)
T 3mc6_A 416 T-RLSAHVVDEICDILRTTVQE 436 (497)
T ss_dssp C-TTTTCTHHHHHHHHHHHHHH
T ss_pred e-CCCHHHHHHHHHHHHHHHHH
Confidence 8 67999999999999998754
No 65
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.92 E-value=5.1e-24 Score=235.44 Aligned_cols=318 Identities=9% Similarity=0.070 Sum_probs=216.5
Q ss_pred ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC------CCCCceeEEecCCchhhHHHHHhhhc
Q psy16512 72 VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN------TDSDHYSVIFTSGATSAIKTVSEYFE 145 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g------~~~~~~~iv~t~g~t~al~~~~~al~ 145 (815)
..++.+.+++.+.+.......+.. ..++|+.++++++ +++++ |++|+|+++|+.+++.++.
T Consensus 36 ~~~~~v~~a~~~~~~~~~~~y~~~-----------~~~lr~~la~~~~~~~~~~~~~~~--i~~t~g~~~a~~~~~~~~~ 102 (377)
T 3fdb_A 36 STCPAVLQAITDAVQREAFGYQPD-----------GSLLSQATAEFYADRYGYQARPEW--IFPIPDVVRGLYIAIDHFT 102 (377)
T ss_dssp CCCHHHHHHHHHHHHTTCCSSCCS-----------SCCHHHHHHHHHHHHHCCCCCGGG--EEEESCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCC-----------CHHHHHHHHHHHHHHhCCCCCHHH--EEEeCChHHHHHHHHHHhc
Confidence 356778888877665422222221 1245566666655 66666 9999999999999999997
Q ss_pred cCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHH
Q psy16512 146 FNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWC 223 (815)
Q Consensus 146 ~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I 223 (815)
++|| |++....|+++.......+... .++.+.+ ++++.++++++ ++++++++++++||||.++|.+++
T Consensus 103 -~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~d~~~l~~~l~-------~~~~~v~i~~p~nptG~~~~~~~l 172 (377)
T 3fdb_A 103 -PAQSKVIVPTPAYPPFFHLLSATQREGIFIDATGG--INLHDVEKGFQ-------AGARSILLCNPYNPLGMVFAPEWL 172 (377)
T ss_dssp -CTTCCEEEEESCCTHHHHHHHHHTCCEEEEECTTS--CCHHHHHHHHH-------TTCCEEEEESSBTTTTBCCCHHHH
T ss_pred -CCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCC--CCHHHHHHHhc-------cCCCEEEEeCCCCCCCCCCCHHHH
Confidence 8998 8888988888766555443333 6666655 67777776543 568999999999999999987776
Q ss_pred HHHhhccccccccccCCCCeEEEEecccccCC-----CCCCCCC---CCCcEEEEccccccccCCc--ceEEEE-ecccc
Q psy16512 224 NTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS-----NMLDLKQ---HQPDFISISFYKMFGYPTG--LGALIV-KQKSA 292 (815)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~-----~~~dl~~---~~~D~vv~S~~K~~g~p~G--~G~l~~-~~~~~ 292 (815)
.++++ .|+++|+++|+|++++... .+.++.. .+.++++.|+||++| ++| +|++++ ++++.
T Consensus 173 ~~l~~--------~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~ 243 (377)
T 3fdb_A 173 NELCD--------LAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWN-IAGLKCAQIIFSNPSDA 243 (377)
T ss_dssp HHHHH--------HHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTT-CGGGCCEEEECCSHHHH
T ss_pred HHHHH--------HHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhcc-CcchhheEEEeCCHHHH
Confidence 65543 2338999999999987632 2222222 234488999999998 446 798887 45555
Q ss_pred cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHh-cc
Q psy16512 293 HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS-FTNAFELSQYTYFYFKQ-LS 370 (815)
Q Consensus 293 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~-~~~~~~l~~~l~~~L~~-l~ 370 (815)
+.+.... ....++.+.++..++.++++........ .++.+++++++.+.|++ +
T Consensus 244 ~~~~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~- 298 (377)
T 3fdb_A 244 EHWQQLS------------------------PVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRI- 298 (377)
T ss_dssp HHHHHSC------------------------HHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHH------------------------HhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhC-
Confidence 4442211 1122466777777777777653222122 38888999999999988 6
Q ss_pred ccCCCCcEEEcCCCCCCCCCcccceEEEEEecC-CCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHH
Q psy16512 371 YSNGQPLVELYHDTDYGESKYQGNIVNFNLLHK-DGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFH 449 (815)
Q Consensus 371 ~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~-~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~ 449 (815)
|+++++.+.. +.++++.++.. .... .+..+++++||.+++|..|...
T Consensus 299 -----~~~~~~~~~~-------~~~~~~~~~~~~~~~~----~~~~l~~~~gi~v~~g~~~~~~---------------- 346 (377)
T 3fdb_A 299 -----PGAKITPMQA-------TYLMWIDFRDTTIEGS----PSEFFIEKAKVAMNDGAWFGED---------------- 346 (377)
T ss_dssp -----TTCEECCCSB-------CSEEEEECTTSCCCSC----HHHHHHHHHCEECEEGGGGCGG----------------
T ss_pred -----CCceEecCCe-------eEEEEEECcccCCCHH----HHHHHHHhCCEEecCChhccCC----------------
Confidence 6788876542 44556777642 1222 2444456669999998766532
Q ss_pred hhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 450 FQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 450 ~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
..+++|+|++. +++++++++++|.+++.+
T Consensus 347 -----------------~~~~~Ris~~~--~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 347 -----------------GTGFCRLNFAT--SREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp -----------------GTTEEEEECCS--CHHHHHHHHHHHHHHHTT
T ss_pred -----------------CCCEEEEEeCC--CHHHHHHHHHHHHHHHhh
Confidence 13789999984 899999999999998753
No 66
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.92 E-value=1.4e-23 Score=230.56 Aligned_cols=320 Identities=12% Similarity=0.064 Sum_probs=222.6
Q ss_pred hhhhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHH
Q psy16512 61 DICYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 61 ~~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~ 139 (815)
..+.|..+... ..++.+.+++.+.+.. ...+|+ .. ..++|+++++++++++++ |++|+|+|+|+.+
T Consensus 27 ~~idl~~~~~~~~~~~~v~~a~~~~~~~-~~~y~~------~~----~~~l~~~la~~~~~~~~~--i~~~~g~t~al~~ 93 (361)
T 3ftb_A 27 ELLDYSSNINPLGIPKSFLNNIDEGIKN-LGVYPD------VN----YRRLNKSIENYLKLKDIG--IVLGNGASEIIEL 93 (361)
T ss_dssp -CEETTCCCCTTCSCHHHHTTHHHHHHG-GGSCCC------TT----CHHHHHHHHHHHTCCSCE--EEEESSHHHHHHH
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHHH-hcCCCC------cc----HHHHHHHHHHHhCCCcce--EEEcCCHHHHHHH
Confidence 34555544333 3567777777766553 222232 12 678999999999998876 9999999999999
Q ss_pred HHhhhccCCCcEEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcccc
Q psy16512 140 VSEYFEFNEGSFIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKY 218 (815)
Q Consensus 140 ~~~al~~~~gdvv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~ 218 (815)
++.++ ..|++....|+++.......+... .++++.++.++++.+++++ ++ +++|++++++||||.++
T Consensus 94 ~~~~~----d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l-------~~-~~~v~i~~p~nptG~~~ 161 (361)
T 3ftb_A 94 SISLF----EKILIIVPSYAEYEINAKKHGVSVVFSYLDENMCIDYEDIISKI-------DD-VDSVIIGNPNNPNGGLI 161 (361)
T ss_dssp HHTTC----SEEEEEESCCTHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHT-------TT-CSEEEEETTBTTTTBCC
T ss_pred HHHHc----CcEEEecCChHHHHHHHHHcCCeEEEeecCcccCCCHHHHHHhc-------cC-CCEEEEeCCCCCCCCCC
Confidence 99887 338888888877655544433222 6677766566666666543 34 89999999999999999
Q ss_pred ChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC-----CCC-CCCCCcEEEEccccccccCCc--ceEEE-Eec
Q psy16512 219 PLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM-----LDL-KQHQPDFISISFYKMFGYPTG--LGALI-VKQ 289 (815)
Q Consensus 219 ~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~-----~dl-~~~~~D~vv~S~~K~~g~p~G--~G~l~-~~~ 289 (815)
|.+++.++++ .|+++|+++|+|++++..... ... ...+..+++.|+||.+| ++| +|+++ .++
T Consensus 162 ~~~~l~~i~~--------~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~g~~~~~~~ 232 (361)
T 3ftb_A 162 NKEKFIHVLK--------LAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFA-MPGIRFGYGITNNK 232 (361)
T ss_dssp CHHHHHHHHH--------HHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTS-CGGGCCEEEEESCH
T ss_pred CHHHHHHHHH--------HhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcC-CCCcceeEEEeCCH
Confidence 9777555554 334899999999998743321 111 12234577889999998 445 79988 566
Q ss_pred ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q psy16512 290 KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQL 369 (815)
Q Consensus 290 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l 369 (815)
++.+.+... ...++++..+..++.++++.........++..++++++.+.|+++
T Consensus 233 ~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 286 (361)
T 3ftb_A 233 EIAAKIKAK--------------------------QNPWNINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKI 286 (361)
T ss_dssp HHHHHHHTT--------------------------SCTTCSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhh--------------------------CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 665544221 112367778888777777642222222378888999999999988
Q ss_pred cccCCCCcEE-EcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHH
Q psy16512 370 SYSNGQPLVE-LYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKF 448 (815)
Q Consensus 370 ~~~~~~p~~~-l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~ 448 (815)
|++. ++.+. ++++++.++.. +..++.+.|.++||.+++|..|..
T Consensus 287 ------~~~~~~~~~~--------~~~~~~~~~~~-----~~~~l~~~l~~~gi~v~~g~~~~~---------------- 331 (361)
T 3ftb_A 287 ------GFIKRVFSPH--------ANFVLCRLENI-----SGEKLYDSLLKEDIVIRRCCNFIG---------------- 331 (361)
T ss_dssp ------SSEEEEECCS--------SSEEEEEESSS-----CHHHHHHHHHTTTEECEECTTSTT----------------
T ss_pred ------CCCceecCCC--------CeEEEEEcCCC-----CHHHHHHHHHHCCeEEeeCccCCC----------------
Confidence 7888 66443 67788887652 334588888888999998876531
Q ss_pred HhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 449 HFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 449 ~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
...+++|+|++ +.+++++++++|+++.
T Consensus 332 -----------------~~~~~iRis~~---~~~~~~~l~~~l~~~~ 358 (361)
T 3ftb_A 332 -----------------LDDSFVRFAIK---DEKKNTKFLRALKGVE 358 (361)
T ss_dssp -----------------CCTTEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred -----------------CCCCEEEEEcC---CHHHHHHHHHHHHHHH
Confidence 11479999998 8899999999998865
No 67
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.92 E-value=7.6e-25 Score=250.24 Aligned_cols=349 Identities=10% Similarity=0.057 Sum_probs=234.9
Q ss_pred hcccccchhhHHHHHHHHhhccc--cCCCCh-hhhhhhhhhhHHHHHHHHHhHcCCCCCc--eeEEecCCchhhHHHHHh
Q psy16512 68 TGAGVYSQSQMNQTIEQLKENIF--SHPHGN-SVLSDFCVSEIDQMRTKILQYFNTDSDH--YSVIFTSGATSAIKTVSE 142 (815)
Q Consensus 68 a~~~~~p~~v~~al~~~l~~~~~--~np~s~-~~~~~~~~~~~~~~r~~la~~~g~~~~~--~~iv~t~g~t~al~~~~~ 142 (815)
++..+.++.+.+++.+.+.. .+ ++|++. +..........+.+++++++++|+++++ ..|++++|+ +|+.+++.
T Consensus 51 a~e~~~~~~V~eA~~~~l~~-~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~an~~~~~ 128 (483)
T 1rv3_A 51 ASENFASRAVLEALGSCLNN-KYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS-PANFAVYT 128 (483)
T ss_dssp TTCCCCCHHHHHHHTSGGGT-CCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-HHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhc-cCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-HHHHHHHH
Confidence 34556788888888776654 23 566543 1111221122567889999999998754 237787777 88888899
Q ss_pred hhccCCCc-EEEecCCCcchhhH--------HHHhhccc-eEEc--C-chhhhcchhhhhhhhhhhhhcCCCccEEEEec
Q psy16512 143 YFEFNEGS-FIYLTDNHTSVLGM--------RELVKTNQ-IYSF--S-VDDARNMLNEFKESQENVENMRHSNSLFVYPA 209 (815)
Q Consensus 143 al~~~~gd-vv~~~~~h~s~~~~--------~~~~~~~g-~v~~--~-~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~ 209 (815)
++. ++|| |+++..+|+++... ....+... .+++ + .++.+|++.++++++ .++|++|++ +
T Consensus 129 all-~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~------~~~tklIi~-~ 200 (483)
T 1rv3_A 129 ALV-EPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENAR------LFHPKLIIA-G 200 (483)
T ss_dssp HHT-CTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHH------HHCCSEEEE-C
T ss_pred Hhc-CCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHh------hcCCcEEEE-e
Confidence 987 9999 88888888876531 12222112 4444 4 345678888776543 146899999 8
Q ss_pred ccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCC---CCcEEEEccccccccCCcceEEE
Q psy16512 210 ESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQH---QPDFISISFYKMFGYPTGLGALI 286 (815)
Q Consensus 210 ~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~---~~D~vv~S~~K~~g~p~G~G~l~ 286 (815)
++|++ .+.|+++|.++|+ ++|+++++|++|+.|....++... ++|++++|+||+|++|.| |+++
T Consensus 201 ~sn~~-~~~dl~~i~~ia~-----------~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l~Gprg-G~i~ 267 (483)
T 1rv3_A 201 TSCYS-RNLDYGRLRKIAD-----------ENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRA-GMIF 267 (483)
T ss_dssp CSSCC-SCCCHHHHHHHHH-----------HTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCSC-EEEE
T ss_pred CCcCC-CcCCHHHHHHHHH-----------HcCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcccCCCCCc-eEEE
Confidence 99998 9999999999999 899999999999876544333333 689999999999877988 9999
Q ss_pred EecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh-hhH-HHHHHHHHHHHH
Q psy16512 287 VKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-KSF-TNAFELSQYTYF 364 (815)
Q Consensus 287 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-~~~-~~~~~l~~~l~~ 364 (815)
++++... ++ ..++... .+ ...............|+++...+.++.++++.+...+ ..+ ++..++++++.+
T Consensus 268 ~~~~~~~-~~--~~~g~~~----~y-~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~ 339 (483)
T 1rv3_A 268 YRRGVRS-VD--PKTGKEI----LY-NLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSA 339 (483)
T ss_dssp EECSBCC----------CC----BC-CHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred Ecchhhh-hc--cccCcch----hh-HHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence 9987542 22 1111100 00 0000000000011267888888999888888765322 233 888999999999
Q ss_pred HHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEec----cCccCCchhhhhhcC
Q psy16512 365 YFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLR----TGCHCNPGSCQRFLG 440 (815)
Q Consensus 365 ~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~----~g~~~~~~~~~~~~g 440 (815)
.|.++ +++++.+.. ...++.+.+... .++..++.+.|.+.||.++ +|..|. +
T Consensus 340 ~L~~~-------g~~~~~~~~------~~~~~~v~~~~~---g~~~~~~~~~L~~~gI~v~~~~~pg~~~~-------~- 395 (483)
T 1rv3_A 340 ALVEL-------GYKIVTGGS------DNHLILVDLRSK---GTDGGRAEKVLEACSIACNKNTCPGDKSA-------L- 395 (483)
T ss_dssp HHHHT-------TCEEGGGSC------SSSEEEEEGGGG---TCCHHHHHHHHHHTTEECEEECCSSCSCT-------T-
T ss_pred HHHhc-------CCEeccCCC------CCceEEEeccCC---CCCHHHHHHHHHhCCcEEecCCCCCCCcC-------C-
Confidence 99887 678876431 124555555421 1234468888999999998 654321 1
Q ss_pred CCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCC----HHHHHHHHHHHHHHHhh
Q psy16512 441 LSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASN----WDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 441 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t----~edi~~lv~~L~~~~~~ 497 (815)
..+++|||++.+++ ++|+++++++|.+++..
T Consensus 396 --------------------------~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 396 --------------------------RPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp --------------------------SCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------CCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 13789999998888 99999999999998765
No 68
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.92 E-value=1.1e-23 Score=235.38 Aligned_cols=306 Identities=10% Similarity=0.033 Sum_probs=205.1
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHH-HHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMR-ELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~-~~~~~~g--~v~~~~~~~~ 182 (815)
.+++++++++++|++. +++++|+++|+.+++.++. ++|| ||++...|++..... ..++..| ...++.+
T Consensus 84 ~~~le~~lA~l~g~~~----~i~~ssGt~Ai~~al~~l~-~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~--- 155 (415)
T 2fq6_A 84 HFSLQQAMCELEGGAG----CVLFPCGAAAVANSILAFI-EQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL--- 155 (415)
T ss_dssp HHHHHHHHHHHHTCSE----EEEESSHHHHHHHHHHTTC-CTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT---
T ss_pred HHHHHHHHHHHhCCCe----EEEeCCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCC---
Confidence 7899999999999852 5566788999999999987 8999 889998998876543 4455556 3334332
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCC--CCeEEEEecccccCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSR--SNCFVLLDAATYCGSNMLDL 260 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~--~gi~vivD~a~~~g~~~~dl 260 (815)
++++++++| +++|++|++++++||+|.+.|+++|+++|+ + +|+++++|++++.+.....+
T Consensus 156 d~~~le~ai-------~~~tklV~~e~~~NptG~v~dl~~I~~la~-----------~~~~g~~livD~a~a~~~~~~p~ 217 (415)
T 2fq6_A 156 IGADIVKHL-------QPNTKIVFLESPGSITMEVHDVPAIVAAVR-----------SVVPDAIIMIDNTWAAGVLFKAL 217 (415)
T ss_dssp CGGGGGGGC-------CTTEEEEEEESSCTTTCCCCCHHHHHHHHH-----------HHCTTCEEEEECTTTTTTSSCGG
T ss_pred CHHHHHHhh-------ccCCcEEEEECCCCCCCEeecHHHHHHHHH-----------hhcCCCEEEEECCCcccccCCcc
Confidence 555555533 467999999999999999999999999999 8 99999999999866432222
Q ss_pred CCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHH
Q psy16512 261 KQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISL 338 (815)
Q Consensus 261 ~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al 338 (815)
.+++|++++|+||+++++.+ .|+++.+++.++.++... +...++.+....+.+
T Consensus 218 -~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~------------------------~~~G~~~~~~~a~~~ 272 (415)
T 2fq6_A 218 -DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA------------------------YLMGQMVDADTAYIT 272 (415)
T ss_dssp -GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH------------------------HHTTCCCCHHHHHHH
T ss_pred -ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHH------------------------HhcCCCCCHHHHHHH
Confidence 45899999999999994433 699998887655442211 111223333333333
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCCC---------CcccceEEEEEecC-CCCc
Q psy16512 339 KYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGES---------KYQGNIVNFNLLHK-DGTY 407 (815)
Q Consensus 339 ~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~~---------~~~~~i~~f~~~~~-~~~~ 407 (815)
..+++.+. ..+++..+.+..+.+.|.+. |.+. ++.|.....+ ...+++++|.+++. +...
T Consensus 273 ~~~l~~l~---~r~~~~~~n~~~l~~~L~~~------~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~ 343 (415)
T 2fq6_A 273 SRGLRTLG---VRLRQHHESSLKVAEWLAEH------PQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEE 343 (415)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHTC------TTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHH
T ss_pred HhhhhHHH---HHHHHHHHHHHHHHHHHHcC------CCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHH
Confidence 34444332 23356677777888888776 4443 2222210001 13588999999752 1111
Q ss_pred cCHHHHHHhhhcCCcEeccCccCCchhh-----hhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHH
Q psy16512 408 YGYSEVQNLANLKKIQLRTGCHCNPGSC-----QRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWD 482 (815)
Q Consensus 408 ~~~~~v~~~l~~~gI~v~~g~~~~~~~~-----~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~e 482 (815)
...+...|...+|.++.|..|+.... ..+... . . .-|...+.||+|+|.+++++
T Consensus 344 --~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~-~--------------~----~~g~~~~~iRlS~G~e~~~d 402 (415)
T 2fq6_A 344 --LANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRP-Q--------------G----EIDFSGTLIRLHIGLEDVDD 402 (415)
T ss_dssp --HHHHHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCT-T--------------C----CCCCCSCEEEEECCSSCHHH
T ss_pred --HHHHHHhCCcCeEeccCCCCceeEEecCCCccccccc-h--------------h----hcCCCCCEEEEEecCCCHHH
Confidence 12345555667788899988874321 111000 0 0 01333589999999999999
Q ss_pred HHHHHHHHHHH
Q psy16512 483 DVKYFLSFLNQ 493 (815)
Q Consensus 483 di~~lv~~L~~ 493 (815)
+|+++.++|++
T Consensus 403 ~i~~l~~al~~ 413 (415)
T 2fq6_A 403 LIADLDAGFAR 413 (415)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999999975
No 69
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.91 E-value=1.2e-23 Score=236.29 Aligned_cols=309 Identities=14% Similarity=0.086 Sum_probs=210.1
Q ss_pred hhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHH-Hhhccc--eEEcCchh
Q psy16512 105 SEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRE-LVKTNQ--IYSFSVDD 180 (815)
Q Consensus 105 ~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~-~~~~~g--~v~~~~~~ 180 (815)
..++++++++++++|++ + .+++++|+ +|+.+++.++. ++|| ||++...|++++.+.. .+...| ...++.+
T Consensus 114 ~~~~~l~~~lA~l~g~~-~--~v~~~sG~-~Ai~~al~~l~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~- 187 (445)
T 1qgn_A 114 PTTVVLEEKISALEGAE-S--TLLMASGM-CASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPA- 187 (445)
T ss_dssp HHHHHHHHHHHHHHTCS-E--EEEESCHH-HHHHHHHHHHS-CSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS-
T ss_pred hHHHHHHHHHHHHhCCC-c--EEEeCCHH-HHHHHHHHHHh-CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-
Confidence 34889999999999985 3 36666665 99999999987 8999 8888888988776544 355556 3344432
Q ss_pred hhcchhhhhhhhhhhhhcCCCc-cEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCC
Q psy16512 181 ARNMLNEFKESQENVENMRHSN-SLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLD 259 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t-~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~d 259 (815)
+++.++++|+ ++| ++|++++++||||.+.|+++|.++|+ ++|+++|+|++++.+.....
T Consensus 188 --d~~~l~~ai~-------~~tv~lV~le~p~NptG~v~dl~~I~~la~-----------~~g~~livD~a~~~~~~~~~ 247 (445)
T 1qgn_A 188 --DVGALELALN-------QKKVNLFFTESPTNPFLRCVDIELVSKLCH-----------EKGALVCIDGTFATPLNQKA 247 (445)
T ss_dssp --CHHHHHHHHH-------HSCEEEEEEESSCTTTCCCCCHHHHHHHHH-----------HTTCEEEEECTTTCTTTCCT
T ss_pred --CHHHHHHHhc-------cCCCCEEEEeCCCCCCCcccCHHHHHHHHH-----------HcCCEEEEECCCcccccCCc
Confidence 4555555442 568 99999999999999999999999999 89999999999987764322
Q ss_pred CCCCCCcEEEEccccccccCCc---ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHH
Q psy16512 260 LKQHQPDFISISFYKMFGYPTG---LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAII 336 (815)
Q Consensus 260 l~~~~~D~vv~S~~K~~g~p~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 336 (815)
..+++|+++.|+||++| +.| +|+++.++++++.+.... +...++++....+
T Consensus 248 -~~~g~Div~~S~sK~~g-g~gd~~~G~l~~~~~l~~~l~~~~------------------------~~~g~~~~~~~a~ 301 (445)
T 1qgn_A 248 -LALGADLVLHSATKFLG-GHNDVLAGCISGPLKLVSEIRNLH------------------------HILGGALNPNAAY 301 (445)
T ss_dssp -TTTTCSEEEECTTTTTT-CSSSCCCEEEEECHHHHHHHHHHH------------------------HHHCCCCCHHHHH
T ss_pred -cccCCEEEEECCccccc-ccccceEEEEEECHHHHHHHHHHH------------------------HHhCCCCCHHHHH
Confidence 35689999999999999 656 899999887765543211 1112334444444
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcE-EEcCCCCCCCC---------CcccceEEEEEecCCCC
Q psy16512 337 SLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLV-ELYHDTDYGES---------KYQGNIVNFNLLHKDGT 406 (815)
Q Consensus 337 al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~-~l~~~~~~~~~---------~~~~~i~~f~~~~~~~~ 406 (815)
.+..+++.+. ..+++..+.++++.+.|+++ |++ +++.|...+.+ ...+++++|.+++.. .
T Consensus 302 ~~~~~l~~l~---~r~~~~~~~a~~l~~~L~~~------p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~-~ 371 (445)
T 1qgn_A 302 LIIRGMKTLH---LRVQQQNSTALRMAEILEAH------PKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL-L 371 (445)
T ss_dssp HHHHHGGGHH---HHHHHHHHHHHHHHHHHHTC------TTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH-H
T ss_pred HHHHhHHHHH---HHHHHHHHHHHHHHHHHhcC------CCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCH-H
Confidence 4444444432 23355566688888889887 677 55554210001 135899999997521 1
Q ss_pred ccCHHHHHHhhhcCCcEeccCccCCch---hhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHH
Q psy16512 407 YYGYSEVQNLANLKKIQLRTGCHCNPG---SCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDD 483 (815)
Q Consensus 407 ~~~~~~v~~~l~~~gI~v~~g~~~~~~---~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ed 483 (815)
. ...+...|...+|.++.|..|+.. ....+..++.+. +..+ |...+.||+|+|. ||
T Consensus 372 ~--~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~-~~~~--------------g~~~~~iRlSvG~----Ed 430 (445)
T 1qgn_A 372 T--TAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSD-RAKY--------------GIMDNLVRFSFGV----ED 430 (445)
T ss_dssp H--HHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHH-HHTT--------------TCCSSEEEEECCS----SC
T ss_pred H--HHHHHHhCCCceEeccCCCCceeeecccccccccCCHHH-HHhc--------------CCCCCeEEEEecc----CC
Confidence 0 123555666678999999888642 222222333322 2221 3445899999993 67
Q ss_pred HHHHHHHHHHHHh
Q psy16512 484 VKYFLSFLNQYFL 496 (815)
Q Consensus 484 i~~lv~~L~~~~~ 496 (815)
++++++.|++.+.
T Consensus 431 id~li~~L~~al~ 443 (445)
T 1qgn_A 431 FDDLKADILQALD 443 (445)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988763
No 70
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.91 E-value=1.2e-23 Score=233.42 Aligned_cols=314 Identities=11% Similarity=0.061 Sum_probs=208.8
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc----C--CCCCceeEEecCCchhhHHHHHhhhcc
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF----N--TDSDHYSVIFTSGATSAIKTVSEYFEF 146 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~~~iv~t~g~t~al~~~~~al~~ 146 (815)
.++.+.+++.+.+.......+. ... ..++|+.+++++ | +++++ |++|+|+++|+.+++.++.
T Consensus 45 ~~~~v~~a~~~~~~~~~~~y~~-----~~g----~~~lr~~ia~~~~~~~g~~~~~~~--i~~t~g~~~al~~~~~~l~- 112 (385)
T 1b5p_A 45 TPEHVKEAARRALAQGKTKYAP-----PAG----IPELREALAEKFRRENGLSVTPEE--TIVTVGGSQALFNLFQAIL- 112 (385)
T ss_dssp CCHHHHHHHHHHHHTTCCSCCC-----TTC----CHHHHHHHHHHHHHTTCCCCCGGG--EEEESHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHhcCCCCCCC-----CCC----CHHHHHHHHHHHHHHhCCCCChHH--EEEcCChHHHHHHHHHHhc-
Confidence 3466677666655432111111 122 566777777776 4 34555 9999999999999999997
Q ss_pred CCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC---
Q psy16512 147 NEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP--- 219 (815)
Q Consensus 147 ~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~--- 219 (815)
++|| |+++.+.|+.+....+..+... .+++++++ .++++.+++++ .+++++|++++++||||.++|
T Consensus 113 ~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l-------~~~~~~v~~~~p~NPtG~~~~~~~ 185 (385)
T 1b5p_A 113 DPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAI-------TPRTKALVVNSPNNPTGAVYPKEV 185 (385)
T ss_dssp CTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTC-------CTTEEEEEEESSCTTTCCCCCHHH
T ss_pred CCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhc-------CCCCEEEEEeCCCCCCCCCcCHHH
Confidence 8999 9999988877665544433222 56666422 45666666533 457899999999999999999
Q ss_pred hHHHHHHhhccccccccccCCCCeEEEEecccccCCC---CCCCCCC--CCcEEEEccccccccCCc--ceEEEEecccc
Q psy16512 220 LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN---MLDLKQH--QPDFISISFYKMFGYPTG--LGALIVKQKSA 292 (815)
Q Consensus 220 l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~---~~dl~~~--~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~ 292 (815)
+++|.++|+ ++|+++|+|++++.... ..++..+ +.++++.|+||+|| ++| +|+++++++++
T Consensus 186 l~~i~~~~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~G~RiG~~~~~~~~~ 253 (385)
T 1b5p_A 186 LEALARLAV-----------EHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFA-MTGWRIGYACGPKEVI 253 (385)
T ss_dssp HHHHHHHHH-----------HTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTT-CGGGCCEEEECCHHHH
T ss_pred HHHHHHHHH-----------HcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcC-CcccceEEEEeCHHHH
Confidence 555666666 89999999999765321 1222222 56789999999999 558 89999988776
Q ss_pred cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHHHHHHh
Q psy16512 293 HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT----MEKKRKSFTNAFELSQYTYFYFKQ 368 (815)
Q Consensus 293 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~----l~~~~~~~~~~~~l~~~l~~~L~~ 368 (815)
+.+.+.. .....+.+.....++.++++. ...+....+++++.++++.+.|++
T Consensus 254 ~~l~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 309 (385)
T 1b5p_A 254 KAMASVS------------------------RQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTA 309 (385)
T ss_dssp HHHHHHH------------------------HTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH------------------------hhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5553221 011124455666666566643 112212227778888889999987
Q ss_pred ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHH
Q psy16512 369 LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKF 448 (815)
Q Consensus 369 l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~ 448 (815)
+ +++++.+.. +.++.+.++.. + .+..++.+.|.++||.+++|..|..
T Consensus 310 ~-------g~~~~~~~~-------~~~~~~~~~~~-~--~~~~~l~~~l~~~gv~v~~g~~f~~---------------- 356 (385)
T 1b5p_A 310 L-------GLKAVRPSG-------AFYVLMDTSPI-A--PDEVRAAERLLEAGVAVVPGTDFAA---------------- 356 (385)
T ss_dssp H-------TCCBCCCSB-------TTEEEEECTTT-C--SSHHHHHHHHHHTTEECEESGGGTC----------------
T ss_pred C-------CCeecCCCe-------eEEEEEecCCC-C--CCHHHHHHHHHHCCeEEecccccCC----------------
Confidence 6 455554432 44555555421 1 2344677777899999998865421
Q ss_pred HhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 449 HFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 449 ~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.+++|||++ +++++++++++.|.+++
T Consensus 357 -------------------~~~iRis~~--~~~~~i~~~l~~l~~~l 382 (385)
T 1b5p_A 357 -------------------FGHVRLSYA--TSEENLRKALERFARVL 382 (385)
T ss_dssp -------------------TTEEEEECC--SCHHHHHHHHHHGGGGC
T ss_pred -------------------CCeEEEEec--CCHHHHHHHHHHHHHHH
Confidence 278999998 68999999999887754
No 71
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.91 E-value=5.6e-24 Score=236.13 Aligned_cols=328 Identities=12% Similarity=0.027 Sum_probs=216.8
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhH----cC--CCCC-ceeEEecCCc
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQY----FN--TDSD-HYSVIFTSGA 133 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~----~g--~~~~-~~~iv~t~g~ 133 (815)
.++|+.+... ..++.+.+++.+.+.......+. ... ..++++.++++ +| ++++ + |++|+|+
T Consensus 32 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-----~~g----~~~l~~~la~~l~~~~g~~~~~~~~--v~~~~g~ 100 (386)
T 1u08_A 32 AINLSQGFPDFDGPRYLQERLAHHVAQGANQYAP-----MTG----VQALREAIAQKTERLYGYQPDADSD--ITVTAGA 100 (386)
T ss_dssp CEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCC-----TTC----CHHHHHHHHHHHHHHHSCCCCTTTT--EEEESSH
T ss_pred eEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCC-----CCC----CHHHHHHHHHHHHHHhCCCCCCCCC--EEEcCCh
Confidence 4555555433 34577777777666431111111 112 45666777766 46 4455 6 9999999
Q ss_pred hhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch-hhhcchhhhhhhhhhhhhcCCCccEEEEecc
Q psy16512 134 TSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD-DARNMLNEFKESQENVENMRHSNSLFVYPAE 210 (815)
Q Consensus 134 t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~ 210 (815)
++|+.+++.++. ++|| |++....|+++....+..+... .++.+.+ ...+++.+++++ .+++++|+++++
T Consensus 101 ~~a~~~~~~~~~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l-------~~~~~~v~l~~p 172 (386)
T 1u08_A 101 TEALYAAITALV-RNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALL-------SERTRLVILNTP 172 (386)
T ss_dssp HHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHC-------CTTEEEEEEESS
T ss_pred HHHHHHHHHHhC-CCCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhh-------cccCEEEEEeCC
Confidence 999999999997 8898 8899988987765444332222 5566542 345666666533 467899999999
Q ss_pred cCCCccccChH---HHHHHhhccccccccccCCCCeEEEEeccccc----CCCCCCCC----CCCCcEEEEccccccccC
Q psy16512 211 SNFSGTKYPLS---WCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC----GSNMLDLK----QHQPDFISISFYKMFGYP 279 (815)
Q Consensus 211 ~n~tG~~~~l~---~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~----g~~~~dl~----~~~~D~vv~S~~K~~g~p 279 (815)
+||||.++|.+ +|.++|+ ++|+++|+|++++. |....++. ..+.|+++.|+||+|| +
T Consensus 173 ~nptG~~~~~~~l~~i~~~~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~-~ 240 (386)
T 1u08_A 173 HNPSATVWQQADFAALWQAIA-----------GHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYH-M 240 (386)
T ss_dssp CTTTCCCCCHHHHHHHHHHHT-----------TSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTT-C
T ss_pred CCCCCccCCHHHHHHHHHHHH-----------HcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcC-C
Confidence 99999999864 4555666 89999999999875 22222222 2367999999999999 6
Q ss_pred Cc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHH
Q psy16512 280 TG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAF 356 (815)
Q Consensus 280 ~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~ 356 (815)
+| +|++++++++++.+.+.. ....++.+.+...++.++++........+ ++..
T Consensus 241 ~G~r~G~~~~~~~~~~~l~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 296 (386)
T 1u08_A 241 TGWKVGYCVAPAPISAEIRKVH------------------------QYLTFSVNTPAQLALADMLRAEPEHYLALPDFYR 296 (386)
T ss_dssp GGGCCEEEECCHHHHHHHHHHH------------------------HHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHH
T ss_pred cccceEEEEcCHHHHHHHHHHH------------------------HhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 68 899999888766553221 11123456666666666766432111222 7788
Q ss_pred HHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh-hcCCcEeccCccCCchhh
Q psy16512 357 ELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSC 435 (815)
Q Consensus 357 ~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~ 435 (815)
++++++.+.|+++ +++++.+.. +.++++.++... ..+..++.+.| .++||.+++|..|....
T Consensus 297 ~~~~~l~~~L~~~-------g~~~~~~~~-------g~~~~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~- 359 (386)
T 1u08_A 297 QKRDILVNALNES-------RLEILPCEG-------TYFLLVDYSAVS--TLDDVEFCQWLTQEHGVAAIPLSVFCADP- 359 (386)
T ss_dssp HHHHHHHHHTTSS-------SCEECCCCB-------SSEEEEECTTTC--CSCHHHHHHHHHHHSCEECEEGGGGCSSC-
T ss_pred HHHHHHHHHHHHC-------CCeecCCCc-------eEEEEEecCCCC--CCCHHHHHHHHHHhCCEEEeCchHhCCCC-
Confidence 8888898888776 567765432 567888775421 02234566655 57899999875432110
Q ss_pred hhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHH
Q psy16512 436 QRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 436 ~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~ 493 (815)
...+++|+|++ ++++++++++++|++
T Consensus 360 ------------------------------~~~~~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 360 ------------------------------FPHKLIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp ------------------------------CCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred ------------------------------CCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence 11378999998 489999999998864
No 72
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.91 E-value=3.4e-23 Score=233.17 Aligned_cols=331 Identities=13% Similarity=0.057 Sum_probs=224.3
Q ss_pred hhhhhhhcc-----cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC-----CCCCceeEEecC
Q psy16512 62 ICYLDYTGA-----GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN-----TDSDHYSVIFTS 131 (815)
Q Consensus 62 ~iyLd~a~~-----~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g-----~~~~~~~iv~t~ 131 (815)
.++|..... .++++.+.+++.+.+..... ..+..... ..++|+.++++++ +++++ |++|+
T Consensus 56 ~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~----~~y~~~~g----~~~lr~~la~~~~~~~~~~~~~~--v~~t~ 125 (427)
T 3dyd_A 56 MISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKY----NGYAPSIG----FLSSREEIASYYHCPEAPLEAKD--VILTS 125 (427)
T ss_dssp CEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCS----SSCCCTTC----CHHHHHHHHHHHCBTTBCCCGGG--EEEES
T ss_pred EEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcC----CCCCCCCC----cHHHHHHHHHHHhhcCCCCChHH--EEEec
Confidence 466665543 25677888888776654211 01111223 7789999999998 66776 99999
Q ss_pred CchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch--hhhcchhhhhhhhhhhhhcCCCccEEEE
Q psy16512 132 GATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD--DARNMLNEFKESQENVENMRHSNSLFVY 207 (815)
Q Consensus 132 g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~--~~~~~~~~~~~l~~~~~~~~~~t~lv~i 207 (815)
|+|+|+.+++.++. ++|| |++..+.|+.+.......+... .++.+++ ..++++.+++++ .+++++|++
T Consensus 126 g~t~al~~~~~~l~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l-------~~~~~~v~i 197 (427)
T 3dyd_A 126 GCSQAIDLCLAVLA-NPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLI-------DEKTACLIV 197 (427)
T ss_dssp SHHHHHHHHHHHHC-CTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSC-------CTTEEEEEE
T ss_pred CcHHHHHHHHHHhc-CCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHh-------ccCCCEEEE
Confidence 99999999999998 8898 8888877776554444333222 4555432 245666666533 457899999
Q ss_pred ecccCCCccccC---hHHHHHHhhccccccccccCCCCeEEEEeccccc----CCCCCCCCCCCCc---EEEEccccccc
Q psy16512 208 PAESNFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC----GSNMLDLKQHQPD---FISISFYKMFG 277 (815)
Q Consensus 208 ~~~~n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~----g~~~~dl~~~~~D---~vv~S~~K~~g 277 (815)
++++||||..+| +++|.++|+ ++|+++|+|+++.. +....++..++.+ +++.|+||.|+
T Consensus 198 ~~p~nptG~~~~~~~l~~i~~~~~-----------~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~ 266 (427)
T 3dyd_A 198 NNPSNPCGSVFSKRHLQKILAVAA-----------RQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWL 266 (427)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHH-----------HTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSS
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHH-----------HCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCC
Confidence 999999999999 777777777 89999999999875 2222233333333 66789999988
Q ss_pred cCCc--ceEEEEecc-------cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH--H
Q psy16512 278 YPTG--LGALIVKQK-------SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM--E 346 (815)
Q Consensus 278 ~p~G--~G~l~~~~~-------~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l--~ 346 (815)
++| +|++++++. +.+.+... .....+++.++..++.++++.. .
T Consensus 267 -~~G~riG~~~~~~~~~~~~~~i~~~l~~~-------------------------~~~~~~~~~~~~~a~~~~L~~~~~~ 320 (427)
T 3dyd_A 267 -VPGWRLGWILIHDRRDIFGNEIRDGLVKL-------------------------SQRILGPCTIVQGALKSILCRTPGE 320 (427)
T ss_dssp -CGGGCCEEEEEECSTTSSHHHHHHHHHHH-------------------------HHHHCCSCHHHHHHHHHHHHHSCHH
T ss_pred -CcCcceEEEEecCcchhhHHHHHHHHHHH-------------------------HhccCCCCHHHHHHHHHHHHhcCHH
Confidence 457 799999853 22222110 0012467777787777777642 1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC-CCccCHHHHHHhh-hcCCcEe
Q psy16512 347 KKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD-GTYYGYSEVQNLA-NLKKIQL 424 (815)
Q Consensus 347 ~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~-~~~~~~~~v~~~l-~~~gI~v 424 (815)
......++..++++++.+.|+++ |+++++.+.. +.++.+.+.... ....+..++.+.| .++||.+
T Consensus 321 ~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~p~~-------g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v 387 (427)
T 3dyd_A 321 FYHNTLSFLKSNADLCYGALAAI------PGLRPVRPSG-------AMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHC 387 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS------TTEEEECCSB-------TTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC------CCceecCCCe-------eEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEE
Confidence 12112278888999999999988 7888876543 667777775210 0012233455555 6899999
Q ss_pred ccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 425 RTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 425 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+|..|.. .+++|++++ ++++++++++++|.+++.+
T Consensus 388 ~~g~~~~~-----------------------------------~~~iRis~~--~~~e~i~~~l~~l~~~l~~ 423 (427)
T 3dyd_A 388 LPATCFEY-----------------------------------PNFIRVVIT--VPEVMMLEACSRIQEFCEQ 423 (427)
T ss_dssp EEGGGGTC-----------------------------------TTEEEEESC--SCHHHHHHHHHHHHHHHHH
T ss_pred ECCcccCC-----------------------------------CCeEEEEEC--CCHHHHHHHHHHHHHHHHH
Confidence 98865431 378999987 6899999999999998754
No 73
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.91 E-value=2.3e-23 Score=240.39 Aligned_cols=296 Identities=11% Similarity=0.031 Sum_probs=220.9
Q ss_pred HHHHHHHHHhHcCCCC--CceeE--EecCCchhhHHHHHhhhccCCC--------c-EEEecCCCcchhhHHHHhhccc-
Q psy16512 107 IDQMRTKILQYFNTDS--DHYSV--IFTSGATSAIKTVSEYFEFNEG--------S-FIYLTDNHTSVLGMRELVKTNQ- 172 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~--~~~~i--v~t~g~t~al~~~~~al~~~~g--------d-vv~~~~~h~s~~~~~~~~~~~g- 172 (815)
.+++++++++++|++. ++ + ++|+|+|+|+.+++.++. .+| | |+++...|+++.......+...
T Consensus 141 e~~l~~~la~~~g~~~~~~~--v~~~~t~ggt~a~~~al~a~~-~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~~~G~~v~ 217 (514)
T 3mad_A 141 EAEVVAMTAHMLGGDAAGGT--VCGTVTSGGTESLLLAMKTYR-DWARATKGITAPEAVVPVSAHAAFDKAAQYFGIKLV 217 (514)
T ss_dssp HHHHHHHHHHHTTGGGGTSC--CEEEEESSHHHHHHHHHHHHH-HHHHHHHCCSSCEEEEETTSCTHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHcCCCCccCC--cceEEcCcHHHHHHHHHHHHH-HHhhhhcCCCCCeEEEeCccchHHHHHHHHcCCeeE
Confidence 5678899999999874 44 6 999999999999999987 554 6 8899999988766655543332
Q ss_pred eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccc
Q psy16512 173 IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY 252 (815)
Q Consensus 173 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~ 252 (815)
.++++.++.++++.++++| ++++++|++++++||||.+.|+++|.++|+ ++|+++|+|++++
T Consensus 218 ~v~~~~~~~~d~~~Le~~i-------~~~~~~v~~~~~~nptG~~~~l~~i~~la~-----------~~~i~livDea~~ 279 (514)
T 3mad_A 218 RTPLDADYRADVAAMREAI-------TPNTVVVAGSAPGYPHGVVDPIPEIAALAA-----------EHGIGCHVDACLG 279 (514)
T ss_dssp EECBCTTSCBCHHHHHHHC-------CTTEEEEEEETTCTTTCCCCCHHHHHHHHH-----------HHTCEEEEECTTT
T ss_pred EeeeCCCCCCCHHHHHHHh-------ccCCEEEEEeCCCCCCccccCHHHHHHHHH-----------HhCCeEEEecccc
Confidence 5666666667888777644 467999999999999999999999999999 8999999999977
Q ss_pred cCC-----------CCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcc----cccCceEEEEecCCccccc
Q psy16512 253 CGS-----------NMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKT----FYGGGTVKISMANENFHIK 317 (815)
Q Consensus 253 ~g~-----------~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~----~~g~~~~~~~~~~~~~~~~ 317 (815)
.+. .+++....++|++++|+||++++|.|+|+++++++........ +.++..
T Consensus 280 ~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------------- 346 (514)
T 3mad_A 280 GFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLY------------- 346 (514)
T ss_dssp TTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTCSE-------------
T ss_pred cccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCCcc-------------
Confidence 432 2455566789999999999966688999999998765432211 111111
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccce
Q psy16512 318 KDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS--FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNI 395 (815)
Q Consensus 318 ~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~--~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i 395 (815)
......|+.+...++++.+++..+...+.. .++..++++++.+.|+++ ++++++.+. .++
T Consensus 347 ----~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~--------~~~ 408 (514)
T 3mad_A 347 ----FSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAI------PSLKILGDP--------LWV 408 (514)
T ss_dssp ----EESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------TTCEESSCC--------SSE
T ss_pred ----cCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC------CCeEEeCCC--------eEE
Confidence 011235677777788888888877654322 288899999999999988 788888654 347
Q ss_pred EEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEec
Q psy16512 396 VNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISY 475 (815)
Q Consensus 396 ~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~ 475 (815)
+.|...+ .+..++.+.|.++||.+ .|..+ .+.+|+++
T Consensus 409 ~~~~~~~-----~~~~~l~~~L~~~Gi~v-~g~~~-------------------------------------~~~~Ri~~ 445 (514)
T 3mad_A 409 IAVASDE-----LNIYQVMEEMAGRGWRL-NGLHR-------------------------------------PPAFHVAL 445 (514)
T ss_dssp EEEECSS-----SCHHHHHHHHHTTTCBC-EEETT-------------------------------------TTEEEEEC
T ss_pred EEEeCCC-----CCHHHHHHHHHhcCCEe-ccCCC-------------------------------------CCeEEEEE
Confidence 7776533 23346888898899987 33211 25799999
Q ss_pred cC-CCCHHHHHHHHHHHHHHHhh
Q psy16512 476 GH-ASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 476 g~-~~t~edi~~lv~~L~~~~~~ 497 (815)
+. .++++++++++++|++++.+
T Consensus 446 ~~~~~~~e~i~~~l~~L~~~l~~ 468 (514)
T 3mad_A 446 TLRHTEPGVVDRFLADLQDAVAQ 468 (514)
T ss_dssp CGGGGSTTHHHHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHHHH
Confidence 84 45679999999999988753
No 74
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.91 E-value=1.2e-23 Score=237.58 Aligned_cols=305 Identities=12% Similarity=0.059 Sum_probs=209.5
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcC-chhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFS-VDDA 181 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~-~~~~ 181 (815)
+.++++++++++|+++++ +++++|+|.+++.+..++..++|| ||++..+|+++.. +...++..| .+.++ .++.
T Consensus 110 ~~~~~~~la~~~g~~~~~--i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~~~~ 187 (438)
T 1wyu_A 110 TFEYQTMIAELAGLEIAN--ASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGR 187 (438)
T ss_dssp HHHHHHHHHHHHTSSEEC--SCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTB
T ss_pred HHHHHHHHHHHhCCCccc--eEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCcCCc
Confidence 889999999999998766 899999996655555554447888 9999999999875 444455556 33333 3333
Q ss_pred hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecc-cccCCCCCCC
Q psy16512 182 RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAA-TYCGSNMLDL 260 (815)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a-~~~g~~~~dl 260 (815)
+++++ | +++|++|+++++ |+||.+.|+++|.++|+ ++|+++++|+. ++.|....+
T Consensus 188 ~d~~~----i-------~~~t~~v~i~~p-n~tG~~~~l~~i~~la~-----------~~g~~vivd~d~~a~g~~~~~- 243 (438)
T 1wyu_A 188 TPLPE----V-------GEEVGAVVVQNP-NFLGALEDLGPFAEAAH-----------GAGALFVAVADPLSLGVLKPP- 243 (438)
T ss_dssp CCCCC----C-------CTTEEEEEEESS-CTTSBCCCHHHHHHHHH-----------HTTCEEEEECCTTGGGTBCCH-
T ss_pred cCHHH----h-------CCCeEEEEEECC-CCCeEEecHHHHHHHHH-----------HcCCEEEEEechhhccCcCCC-
Confidence 44433 2 367999999998 99999999999999999 89999998855 555654333
Q ss_pred CCCCCcEEEEcccc-----ccccCCcceEEEEecccccccCcccccCceEEEEecC-Ccccccc--cCccccccCCCCCh
Q psy16512 261 KQHQPDFISISFYK-----MFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMAN-ENFHIKK--DGLFEKFEDGTVNY 332 (815)
Q Consensus 261 ~~~~~D~vv~S~~K-----~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~-~~~~~~~--~~~~~~~~~gt~~~ 332 (815)
..+++|++++|.|| ++++| |+|++++++++.+.+.....|+ ... ... ..+.... .....+++.++.|+
T Consensus 244 ~~~g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~~~~~l~~~~~g~-~~~--~~~~~~~~~~l~~~~~~~r~~~~t~~~ 319 (438)
T 1wyu_A 244 GAYGADIAVGDGQSLGLPMGFGGP-HFGFLATKKAFVRQLPGRLVSE-TVD--VEGRRGFILTLQAREQYIRRAKAKSNI 319 (438)
T ss_dssp HHHTCSEEEEECTTTTCCCGGGCS-CCEEEEECGGGGGGCCSCCEEE-EEB--TTSCEEEEECCGGGSHHHHGGGSSCCC
T ss_pred ccCCCCEEEECCcccCCCccCCCC-CeeEEEEcHHHHHhCCCceecc-ccc--cCCCcceeeeccccccccchhcccCCc
Confidence 34578999999777 56668 8999999998877664433222 110 000 0011000 11122455677776
Q ss_pred ---hHHHHHHHH--HHHHHhhhh-hH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC
Q psy16512 333 ---LAIISLKYG--FDTMEKKRK-SF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG 405 (815)
Q Consensus 333 ---~~~~al~~a--l~~l~~~~~-~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~ 405 (815)
..+.++.++ +..+...+. .+ ++..++++++.+.|+++ ++++++.+.. .-.++.+.+.
T Consensus 320 ~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~------~~~~~~~~~~---- 383 (438)
T 1wyu_A 320 TTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEV------PGVRPFTPKP------FFNEFALALP---- 383 (438)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------TTCEECSCSS------BCSEEEEECS----
T ss_pred cchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC------CCeEECCCCC------eEEEEEEeCC----
Confidence 445555444 555544322 22 88899999999999988 7888876421 1233444432
Q ss_pred CccCHHHHHHhhhcCCcEe--ccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHH
Q psy16512 406 TYYGYSEVQNLANLKKIQL--RTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDD 483 (815)
Q Consensus 406 ~~~~~~~v~~~l~~~gI~v--~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ed 483 (815)
.+..++.+.|.++||.+ +.+.+|. .+++|||++.++|++|
T Consensus 384 --~~~~~~~~~L~~~gi~v~~~~~~~~~------------------------------------~~~lRis~~~~~t~ed 425 (438)
T 1wyu_A 384 --KDPEAVRRALAERGFHGATPVPREYG------------------------------------ENLALFAATELHEEED 425 (438)
T ss_dssp --SCHHHHHHHHHHTTCCCCEECCTTSC------------------------------------SSEEEEECCTTCCHHH
T ss_pred --CCHHHHHHHHHHCCceeccccccccC------------------------------------CCeEEEEecccCCHHH
Confidence 23346888888889998 5454321 3789999999999999
Q ss_pred HHHHHHHHHHHH
Q psy16512 484 VKYFLSFLNQYF 495 (815)
Q Consensus 484 i~~lv~~L~~~~ 495 (815)
+++++++|++++
T Consensus 426 i~~~~~~l~~~l 437 (438)
T 1wyu_A 426 LLALREALKEVL 437 (438)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 75
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.91 E-value=1.7e-23 Score=232.76 Aligned_cols=328 Identities=10% Similarity=0.076 Sum_probs=214.3
Q ss_pred hhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC------CCCCceeEEecCCchh
Q psy16512 63 CYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN------TDSDHYSVIFTSGATS 135 (815)
Q Consensus 63 iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g------~~~~~~~iv~t~g~t~ 135 (815)
+.|..+... ..++.+.+++.+.+.......+ .... ..++|+.++++++ +++++ |++|+|+++
T Consensus 34 i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~y~-----~~~g----~~~lr~~ia~~~~~~~g~~~~~~~--v~~t~g~~~ 102 (391)
T 3h14_A 34 IHMEVGQPGTGAPRGAVEALAKSLETDALGYT-----VALG----LPALRQRIARLYGEWYGVDLDPGR--VVITPGSSG 102 (391)
T ss_dssp EECCCSSCSSCSCHHHHHHHHHHHC---------------C----CHHHHHHHHHHHHHHHCCCCCGGG--EEEESSHHH
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHhcCCCCCC-----CCCC----hHHHHHHHHHHHHHHhCCCCCHHH--EEEecChHH
Confidence 444443333 2356677777766543211111 1122 5667777777764 56666 999999999
Q ss_pred hHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh--hhcchhhhhhhhhhhhhcCCCccEEEEeccc
Q psy16512 136 AIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD--ARNMLNEFKESQENVENMRHSNSLFVYPAES 211 (815)
Q Consensus 136 al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~ 211 (815)
|+.+++.++. ++|| |++....|+++....+..+... .++++.++ .++++.+++ . ++++|++++++
T Consensus 103 al~~~~~~l~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~-------~---~~~~v~i~~p~ 171 (391)
T 3h14_A 103 GFLLAFTALF-DSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAG-------L---DLAGLMVASPA 171 (391)
T ss_dssp HHHHHHHHHC-CTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTT-------S---CCSEEEEESSC
T ss_pred HHHHHHHHhc-CCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHh-------c---CCeEEEECCCC
Confidence 9999999997 8999 8888888877655444433222 66776554 346655553 1 68999999999
Q ss_pred CCCccccC---hHHHHHHhhccccccccccCCCCeEEEEecccccCC---CCCCCCC-CCCcEEEEccccccccCCc--c
Q psy16512 212 NFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS---NMLDLKQ-HQPDFISISFYKMFGYPTG--L 282 (815)
Q Consensus 212 n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~---~~~dl~~-~~~D~vv~S~~K~~g~p~G--~ 282 (815)
||||.++| +++|.++|+ ++|+++|+|++++... .+..... .+.++++.|++|++| ++| +
T Consensus 172 nptG~~~~~~~l~~l~~~~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~ 239 (391)
T 3h14_A 172 NPTGTMLDHAAMGALIEAAQ-----------AQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFS-MTGWRV 239 (391)
T ss_dssp TTTCCCCCHHHHHHHHHHHH-----------HTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTC-CTTSCC
T ss_pred CCCCccCCHHHHHHHHHHHH-----------HcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccC-Ccccee
Confidence 99999999 455566666 8999999999987432 1222222 245688899999998 556 7
Q ss_pred eEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy16512 283 GALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYT 362 (815)
Q Consensus 283 G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l 362 (815)
|++++++++++.+.... ....++.+..+..++.++++....+....++..++++++
T Consensus 240 G~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l 295 (391)
T 3h14_A 240 GWMVVPEDQVRVVERIA------------------------QNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLM 295 (391)
T ss_dssp EEEECCGGGHHHHHHHH------------------------HHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHHH------------------------hhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 99999888766553221 122346677777777666652222222237888889999
Q ss_pred HHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCC
Q psy16512 363 YFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGL 441 (815)
Q Consensus 363 ~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~ 441 (815)
.+.|+++ +...+..+. .+.++.+.++... .+..++.+.| +++||.+++|..|..+.
T Consensus 296 ~~~l~~~------~~~~~~~~~-------~~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~~~~~~------- 352 (391)
T 3h14_A 296 LERLPKA------GFTRIAPPD-------GAFYVYADVSDLT---DDSRAFAAEILEKAGVAVTPGLDFDPER------- 352 (391)
T ss_dssp HHHHHHH------TCCCBCCCC-------BTTEEEEECTTTC---SCHHHHHHHHHHHHCEECEEGGGTCTTT-------
T ss_pred HHHHHHc------CCCcccCCC-------eeEEEEEecCccC---CCHHHHHHHHHHHCCEEEcCchhhCCCC-------
Confidence 9999887 222222332 1455666665311 2233566665 45699999988765411
Q ss_pred CHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 442 SDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 442 ~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
..+++|+|++. +++++++++++|.+++...
T Consensus 353 -------------------------~~~~iRis~~~--~~~~i~~~l~~l~~~~~~~ 382 (391)
T 3h14_A 353 -------------------------GAGTLRFSYAR--ATADIEEGLDRLEAFMQAR 382 (391)
T ss_dssp -------------------------GGGEEEEECCS--CHHHHHHHHHHHHHHHHHC
T ss_pred -------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHHh
Confidence 13799999996 7899999999999987543
No 76
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.91 E-value=1.2e-22 Score=224.00 Aligned_cols=314 Identities=12% Similarity=0.075 Sum_probs=220.1
Q ss_pred hhhhhhccc-ccchhhHHHHHHHHhhc---cccCCCChhhhhhhhhhhHHHHHHHHHhH------cCCCCCceeEEecCC
Q psy16512 63 CYLDYTGAG-VYSQSQMNQTIEQLKEN---IFSHPHGNSVLSDFCVSEIDQMRTKILQY------FNTDSDHYSVIFTSG 132 (815)
Q Consensus 63 iyLd~a~~~-~~p~~v~~al~~~l~~~---~~~np~s~~~~~~~~~~~~~~~r~~la~~------~g~~~~~~~iv~t~g 132 (815)
++|+.+... ..++.+.+++.+.+... ....+. .. ..++++.++++ +++++++ |++|+|
T Consensus 33 idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~------~~----~~~l~~~la~~l~~~~g~~~~~~~--v~~~~G 100 (369)
T 3cq5_A 33 IRLNTNENPYPPSEALVADLVATVDKIATELNRYPE------RD----AVELRDELAAYITKQTGVAVTRDN--LWAANG 100 (369)
T ss_dssp EECSSCCCCSCCCHHHHHHHHHHHHHHGGGTTSCCC------TT----CHHHHHHHHHHHHHHHCCCCCGGG--EEEESH
T ss_pred eeccCCCCCCCCCHHHHHHHHHHHHhcccccccCCC------cc----HHHHHHHHHHhhhhcccCCCChHh--EEECCC
Confidence 445544433 35677788777766432 111111 11 34677788877 5666666 999999
Q ss_pred chhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCC-CccEEEEec
Q psy16512 133 ATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRH-SNSLFVYPA 209 (815)
Q Consensus 133 ~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~-~t~lv~i~~ 209 (815)
+++++.+++.++. ++|| |++....|+++.......+... .++.+.+...+++.++++++ + ++++|++++
T Consensus 101 ~~~al~~~~~~l~-~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-------~~~~~~v~~~~ 172 (369)
T 3cq5_A 101 SNEILQQLLQAFG-GPGRTALGFQPSYSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIR-------AKQPDIVFVTT 172 (369)
T ss_dssp HHHHHHHHHHHHC-STTCEEEEEESSCTHHHHHHHHTTCEEEEEECCTTSSCCHHHHHHHHH-------HHCCSEEEEES
T ss_pred hHHHHHHHHHHhc-CCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCcCCCCCHHHHHHHhh-------ccCCCEEEEeC
Confidence 9999999999997 8898 8888988887765444433222 55655444567777766443 3 689999999
Q ss_pred ccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC---CCC-CCCC-CcEEEEccccccccCCc--c
Q psy16512 210 ESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM---LDL-KQHQ-PDFISISFYKMFGYPTG--L 282 (815)
Q Consensus 210 ~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~---~dl-~~~~-~D~vv~S~~K~~g~p~G--~ 282 (815)
++||||.++|++++.++++ .+++++|+|++++.+... ..+ ...+ .++++.|+||+|| ++| +
T Consensus 173 ~~nptG~~~~~~~l~~l~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~ 240 (369)
T 3cq5_A 173 PNNPTGDVTSLDDVERIIN-----------VAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFD-FAGGRL 240 (369)
T ss_dssp SCTTTCCCCCHHHHHHHHH-----------HCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTS-CGGGCC
T ss_pred CCCCCCCCCCHHHHHHHHH-----------hCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcC-Ccccce
Confidence 9999999999999999999 667999999998866532 221 2234 6689999999998 447 6
Q ss_pred eEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy16512 283 GALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYT 362 (815)
Q Consensus 283 G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l 362 (815)
|++++++++++.+.... ...+.+.....++.++++.........++..++++++
T Consensus 241 G~~~~~~~~~~~l~~~~--------------------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l 294 (369)
T 3cq5_A 241 GYFVANPAFIDAVMLVR--------------------------LPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRV 294 (369)
T ss_dssp EEEEECTHHHHHHHTTS--------------------------CTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHcC--------------------------CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 99999988765543211 1124666777777777765322222237888899999
Q ss_pred HHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCC
Q psy16512 363 YFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLS 442 (815)
Q Consensus 363 ~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~ 442 (815)
.+.|++. +++++.+ .++++++.++ . +..++.+.|.++||.+++|. .
T Consensus 295 ~~~L~~~-------g~~~~~~--------~~~~~~~~~~-~-----~~~~l~~~l~~~gi~v~~~~------~------- 340 (369)
T 3cq5_A 295 AARLEEL-------GYAVVPS--------ESNFVFFGDF-S-----DQHAAWQAFLDRGVLIRDVG------I------- 340 (369)
T ss_dssp HHHHHHH-------TCEEECC--------SSSEEEEECC-S-----SHHHHHHHHHHTTEECBCCS------C-------
T ss_pred HHHHHhC-------CCEECCC--------CCeEEEEECC-C-----CHHHHHHHHHHCCEEEEECC------C-------
Confidence 9999875 5666532 2577777764 1 23457788889999998751 0
Q ss_pred HHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 443 DITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 443 ~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+++|+|++ +++|+++++++|++++.
T Consensus 341 -------------------------~~~iRis~~---~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 341 -------------------------AGHLRTTIG---VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp -------------------------TTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred -------------------------CCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence 268999998 78999999999998763
No 77
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.91 E-value=6.6e-24 Score=235.97 Aligned_cols=321 Identities=14% Similarity=0.114 Sum_probs=215.6
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc----CC--CCCceeEEecCCch
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF----NT--DSDHYSVIFTSGAT 134 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g~--~~~~~~iv~t~g~t 134 (815)
.++|+.+... ..++.+.+++.+.+.......+ .... ..++|+.+++++ |+ ++++ |++|+|++
T Consensus 43 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~-----~~~g----~~~lr~~la~~~~~~~g~~~~~~~--v~~~~g~t 111 (389)
T 1o4s_A 43 VINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYT-----DPRG----IYELREGIAKRIGERYKKDISPDQ--VVVTNGAK 111 (389)
T ss_dssp CEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCC-----CTTC----CHHHHHHHHHHHHHHHTCCCCGGG--EEEESHHH
T ss_pred EEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCC-----CCCC----CHHHHHHHHHHHHHHhCCCCCHHH--EEEecCHH
Confidence 3455554433 3456777777666643211111 1122 567788888877 65 5555 99999999
Q ss_pred hhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch--hhhcchhhhhhhhhhhhhcCCCccEEEEecc
Q psy16512 135 SAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD--DARNMLNEFKESQENVENMRHSNSLFVYPAE 210 (815)
Q Consensus 135 ~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~--~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~ 210 (815)
+|+.+++.++. ++|| |++....|+++.......+... .++.+.+ ..++++.+++++ .+++++|+++++
T Consensus 112 ~al~~~~~~l~-~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l-------~~~~~~v~~~~p 183 (389)
T 1o4s_A 112 QALFNAFMALL-DPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLL-------VGKTKAVLINSP 183 (389)
T ss_dssp HHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTC-------CTTEEEEEEESS
T ss_pred HHHHHHHHHhC-CCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhc-------ccCceEEEEcCC
Confidence 99999999996 8898 8899989988766554433222 5666543 234666666533 457899999999
Q ss_pred cCCCccccC---hHHHHHHhhccccccccccCCCCeEEEEecccccCCC---CCCCCC----CCCcEEEEccccccccCC
Q psy16512 211 SNFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN---MLDLKQ----HQPDFISISFYKMFGYPT 280 (815)
Q Consensus 211 ~n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~---~~dl~~----~~~D~vv~S~~K~~g~p~ 280 (815)
+||||.++| +++|.++|+ ++|+++|+|++++.+.. +.++.. .+.|+++.|+||+|| ++
T Consensus 184 ~nptG~~~~~~~l~~l~~~~~-----------~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~~ 251 (389)
T 1o4s_A 184 NNPTGVVYRREFLEGLVRLAK-----------KRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHS-MT 251 (389)
T ss_dssp CTTTCCCCCHHHHHHHHHHHH-----------HHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTT-CG
T ss_pred CCCCCCCCCHHHHHHHHHHHH-----------HcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcC-Cc
Confidence 999999999 666777777 89999999999876542 122211 367999999999998 66
Q ss_pred c--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHH
Q psy16512 281 G--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFEL 358 (815)
Q Consensus 281 G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l 358 (815)
| +|++++++++++.+.+.... ...+.+.....++.++++.. .....++..++
T Consensus 252 G~r~G~l~~~~~~~~~l~~~~~~------------------------~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~ 305 (389)
T 1o4s_A 252 GWRVGYLISSEKVATAVSKIQSH------------------------TTSCINTVAQYAALKALEVD--NSYMVQTFKER 305 (389)
T ss_dssp GGCCEEEECCHHHHHHHHHHHHH------------------------HTCSCCHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred ccceEEEEeCHHHHHHHHHHhhh------------------------cccCCCHHHHHHHHHHHhcc--HHHHHHHHHHH
Confidence 7 89999988876655332111 11233445555444444321 11122788889
Q ss_pred HHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhh-cCCcEeccCccCCchhhhh
Q psy16512 359 SQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN-LKKIQLRTGCHCNPGSCQR 437 (815)
Q Consensus 359 ~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~-~~gI~v~~g~~~~~~~~~~ 437 (815)
++++.+.|+++ +++++.+. .+.++++.++ . +..++.+.|. ++||.+++|..|..
T Consensus 306 ~~~l~~~L~~~-------g~~~~~~~-------~~~~~~~~~~-~-----~~~~l~~~l~~~~gi~v~~g~~f~~----- 360 (389)
T 1o4s_A 306 KNFVVERLKKM-------GVKFVEPE-------GAFYLFFKVR-G-----DDVKFCERLLEEKKVALVPGSAFLK----- 360 (389)
T ss_dssp HHHHHHHHHHT-------TCCCCCCS-------BSSEEEEECS-S-----CHHHHHHHHHHHHCEECEEGGGGTC-----
T ss_pred HHHHHHHHHhc-------CCeeecCC-------cceEEEEeCC-C-----CHHHHHHHHHHHCCEEEeCchhcCC-----
Confidence 99999999886 45554332 2455666664 1 2345777775 89999988754321
Q ss_pred hcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 438 FLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 438 ~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+++|+|++. ++++++++++.|.+++.
T Consensus 361 ------------------------------~~~~Ris~~~--~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 361 ------------------------------PGFVRLSFAT--SIERLTEALDRIEDFLN 387 (389)
T ss_dssp ------------------------------TTEEEEECCS--CHHHHHHHHHHHHHHHT
T ss_pred ------------------------------CCeEEEEEeC--CHHHHHHHHHHHHHHHh
Confidence 2689999983 89999999999998764
No 78
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.91 E-value=1.8e-23 Score=234.98 Aligned_cols=321 Identities=12% Similarity=0.073 Sum_probs=221.6
Q ss_pred ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC--CCCCceeEEecCCchhhHHHHHhhhccCCC
Q psy16512 72 VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN--TDSDHYSVIFTSGATSAIKTVSEYFEFNEG 149 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g--~~~~~~~iv~t~g~t~al~~~~~al~~~~g 149 (815)
..++.+.+++.+.+....+..+.. ..+. .+++.+++++.+| +++++ |+||+|+++|+.+++.++. ++|
T Consensus 74 ~~~~~v~~a~~~~~~~~~~~y~~~---~~~l----~~~l~~~l~~~~g~~~~~~~--v~~~~g~~ea~~~a~~~~~-~~g 143 (421)
T 3l8a_A 74 LPVPEIKEAIINYGREHIFGYNYF---NDDL----YQAVIDWERKEHDYAVVKED--ILFIDGVVPAISIALQAFS-EKG 143 (421)
T ss_dssp CCCHHHHHHHHHHHHHCCSSCBCC---CHHH----HHHHHHHHHHHHCCCCCGGG--EEEESCHHHHHHHHHHHHS-CTE
T ss_pred CCCHHHHHHHHHHHhcCCcCCCCC---CHHH----HHHHHHHHHHHhCCCCCHHH--EEEcCCHHHHHHHHHHHhc-CCC
Confidence 346788888877765433322221 1334 6778888888888 55665 9999999999999999997 899
Q ss_pred c-EEEecCCCcchhhHHHHhhccc-eEEcC-chh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccCh---H
Q psy16512 150 S-FIYLTDNHTSVLGMRELVKTNQ-IYSFS-VDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPL---S 221 (815)
Q Consensus 150 d-vv~~~~~h~s~~~~~~~~~~~g-~v~~~-~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l---~ 221 (815)
| |++....|+++.......+... .++++ .++ .++++.++++++ .+++++|++++++||||.++|. +
T Consensus 144 d~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~------~~~~~~vil~~p~nptG~~~~~~~l~ 217 (421)
T 3l8a_A 144 DAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDII------DNNVKIYLLCSPHNPGGRVWDNDDLI 217 (421)
T ss_dssp EEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHH------HTTEEEEEEESSBTTTTBCCCHHHHH
T ss_pred CEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhh------ccCCeEEEECCCCCCCCCcCCHHHHH
Confidence 8 8888888877665554443332 55654 222 357777766443 2579999999999999999664 4
Q ss_pred HHHHHhhccccccccccCCCCeEEEEecccccC----CCCCCCCC-----CCCcEEEEccccccccCCc--ceEEEEe-c
Q psy16512 222 WCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG----SNMLDLKQ-----HQPDFISISFYKMFGYPTG--LGALIVK-Q 289 (815)
Q Consensus 222 ~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g----~~~~dl~~-----~~~D~vv~S~~K~~g~p~G--~G~l~~~-~ 289 (815)
+|.++|+ ++|+++|+|++|+.. .....+.. .+.++++.|++|+|| ++| +|+++++ +
T Consensus 218 ~l~~l~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~~~G~~~~~~~ 285 (421)
T 3l8a_A 218 KIAELCK-----------KHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFN-IAGTKNSFAIIQNE 285 (421)
T ss_dssp HHHHHHH-----------HHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHT-CGGGCCEEEECCSH
T ss_pred HHHHHHH-----------HcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhcc-CchhheEeEEcCCH
Confidence 5566666 899999999998642 22222222 234588999999998 446 6999988 5
Q ss_pred ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHh
Q psy16512 290 KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQ 368 (815)
Q Consensus 290 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~ 368 (815)
++.+.+.+.. .....++.|..++.++.++++......... ++..++++++.+.|++
T Consensus 286 ~l~~~~~~~~-----------------------~~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~ 342 (421)
T 3l8a_A 286 SLRRKFQYRQ-----------------------LANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEA 342 (421)
T ss_dssp HHHHHHHHHH-----------------------HHTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----------------------HhcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6655442211 112334678888888888877533322223 7888899999999988
Q ss_pred ccccCCCCcEEEcCCCCCCCCCcccceEEEEEec--CCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHH
Q psy16512 369 LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLH--KDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDIT 445 (815)
Q Consensus 369 l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~--~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~ 445 (815)
+ |+++++.+.. +.++++.++. .+.. ++.+.| +++||.+++|..|...
T Consensus 343 ~------~~i~~~~~~~-------~~~~~v~~~~~~~~~~-----~l~~~l~~~~gi~v~~g~~f~~~------------ 392 (421)
T 3l8a_A 343 K------TKIKVMEPEG-------TYLVWLDFSAYAIAQP-----QLSEKLQNEAKVVLNDGAHFGKE------------ 392 (421)
T ss_dssp H------CSCEEECCSB-------SSEEEEECGGGTCCTT-----HHHHHHHHTTCEECEEGGGGCGG------------
T ss_pred C------CCceEeCCCe-------eEEEEEeccccCCCHH-----HHHHHHHHhCCEEEECchhhCCC------------
Confidence 7 6788876542 3444477664 2333 366666 5779999988765421
Q ss_pred HHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 446 IKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 446 ~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
..+++|++++ +++++++++++.|++++.
T Consensus 393 ---------------------~~~~iRi~~~--~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 393 ---------------------GKYFARLNVA--TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp ---------------------GTTEEEEECC--SCHHHHHHHHHHHHHHC-
T ss_pred ---------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 1379999998 589999999999998763
No 79
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.91 E-value=5.8e-24 Score=238.19 Aligned_cols=342 Identities=11% Similarity=-0.011 Sum_probs=220.1
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc----CC--CCC-ceeEEecCCc
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF----NT--DSD-HYSVIFTSGA 133 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g~--~~~-~~~iv~t~g~ 133 (815)
.++|+.+... ..++.+.+++.+.+.......+. ... ..++++.+++++ |. +++ + |++|+|+
T Consensus 27 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-----~~g----~~~l~~~la~~~~~~~g~~~~~~~~--v~~t~g~ 95 (411)
T 2o0r_A 27 AVNLGQGFPDEDGPPKMLQAAQDAIAGGVNQYPP-----GPG----SAPLRRAIAAQRRRHFGVDYDPETE--VLVTVGA 95 (411)
T ss_dssp CEESSCSSCSSCCCHHHHHHHHHHHHTTCCSCCC-----TTC----CHHHHHHHHHHHHHHHCCCCCTTTS--EEEEEHH
T ss_pred eeeccCcCCCCCCCHHHHHHHHHHHhcCCCCCCC-----CCC----CHHHHHHHHHHHHHHcCCCCCCCce--EEEeCCH
Confidence 3455544433 34567777777766531111111 122 456666676665 64 454 5 9999999
Q ss_pred hhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch---hhhcchhhhhhhhhhhhhcCCCccEEEEe
Q psy16512 134 TSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD---DARNMLNEFKESQENVENMRHSNSLFVYP 208 (815)
Q Consensus 134 t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~---~~~~~~~~~~~l~~~~~~~~~~t~lv~i~ 208 (815)
++|+.+++.++. ++|| |++....|+++.......+... .++.+.+ ..++++.+++++ .+++++|+++
T Consensus 96 ~~al~~~~~~~~-~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l-------~~~~~~v~l~ 167 (411)
T 2o0r_A 96 TEAIAAAVLGLV-EPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAV-------TPRTRALIIN 167 (411)
T ss_dssp HHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHC-------CTTEEEEEEE
T ss_pred HHHHHHHHHHhc-CCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhh-------ccCceEEEEe
Confidence 999999999997 8898 8899989988765544333222 5555543 235666666533 4678999999
Q ss_pred cccCCCccccCh---HHHHHHhhccccccccccCCCCeEEEEecccccCCC----CCCCCC----CCCcEEEEccccccc
Q psy16512 209 AESNFSGTKYPL---SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN----MLDLKQ----HQPDFISISFYKMFG 277 (815)
Q Consensus 209 ~~~n~tG~~~~l---~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~----~~dl~~----~~~D~vv~S~~K~~g 277 (815)
+++||||.++|. ++|.++|+ ++|+++|+|++++.+.. +.++.. .+.|+++.|+||+||
T Consensus 168 ~~~nptG~~~~~~~l~~i~~~~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~ 236 (411)
T 2o0r_A 168 SPHNPTGAVLSATELAAIAEIAV-----------AANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFN 236 (411)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHH-----------HTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH-----------HcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcC
Confidence 999999999997 55666676 89999999999875431 222222 357899999999999
Q ss_pred cCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HH
Q psy16512 278 YPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TN 354 (815)
Q Consensus 278 ~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~ 354 (815)
++| +|++++++++++.+.... ....++.+.....++.++++........+ ++
T Consensus 237 -~~G~r~G~~~~~~~~~~~l~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 291 (411)
T 2o0r_A 237 -CTGWKIGWACGPAELIAGVRAAK------------------------QYLSYVGGAPFQPAVALALDTEDAWVAALRNS 291 (411)
T ss_dssp -CTTTCEEEEECCHHHHHHHHHHH------------------------HHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHH
T ss_pred -CccceEEEEeeCHHHHHHHHHHH------------------------hhccCCCChHHHHHHHHHHhCChHHHHHHHHH
Confidence 668 899999887765543211 11122444555666666666432221222 78
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh-hcCCcEeccCccCCch
Q psy16512 355 AFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPG 433 (815)
Q Consensus 355 ~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~ 433 (815)
..++++++.+.|+++ +++++.+.. +.++++.++.... .+..++.+.| .++||.+++|..|...
T Consensus 292 ~~~~~~~l~~~L~~~-------g~~~~~~~~-------g~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~ 355 (411)
T 2o0r_A 292 LRARRDRLAAGLTEI-------GFAVHDSYG-------TYFLCADPRPLGY--DDSTEFCAALPEKVGVAAIPMSAFCDP 355 (411)
T ss_dssp HHHHHHHHHHHHHHH-------TCEECCCCB-------SSEEEEECGGGTC--CCHHHHHHHHHHHHSEECEEGGGGSCC
T ss_pred HHHHHHHHHHHHHHc-------CCEecCCCe-------eEEEEEecCCCCC--CCHHHHHHHHHHhCCEEEcChhhhCCC
Confidence 888899999999886 567665432 5577888764210 1233566655 5789999988665321
Q ss_pred hhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 434 SCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 434 ~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
.... .+. ......+++|||++ ++++++++++++|++++.+.
T Consensus 356 ~~~~------~~~----------------~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~~~~~ 396 (411)
T 2o0r_A 356 AAGQ------ASQ----------------QADVWNHLVRFTFC--KRDDTLDEAIRRLSVLAERP 396 (411)
T ss_dssp C------------------------------CCGGGCEEEECC--SCHHHHHHHHHHHGGGGC--
T ss_pred cccc------ccc----------------cccCCCCeEEEEec--CCHHHHHHHHHHHHHHHhcc
Confidence 1000 000 00001378999997 38999999999998865443
No 80
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.91 E-value=1.8e-23 Score=233.14 Aligned_cols=312 Identities=11% Similarity=0.094 Sum_probs=201.9
Q ss_pred hhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHH-HHhhccc--eEEcCchh
Q psy16512 105 SEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMR-ELVKTNQ--IYSFSVDD 180 (815)
Q Consensus 105 ~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~-~~~~~~g--~v~~~~~~ 180 (815)
...+++++++++++|.+ + .++++++++|+.+++.++. ++|| |+++...|+++.... ..+...| ...++..
T Consensus 65 ~~~~~l~~~la~~~g~~-~---~i~~~sG~~a~~~~l~~~~-~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~- 138 (398)
T 1gc0_A 65 PTLNLLEARMASLEGGE-A---GLALASGMGAITSTLWTLL-RPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA- 138 (398)
T ss_dssp HHHHHHHHHHHHHHTCS-E---EEEESSHHHHHHHHHHHHC-CTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTT-
T ss_pred hHHHHHHHHHHHHhCCC-c---EEEECCHHHHHHHHHHHHh-cCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-
Confidence 33889999999999986 2 4555555799999999987 8898 899999999876544 3335555 3333322
Q ss_pred hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCC
Q psy16512 181 ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDL 260 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl 260 (815)
+++.+++ .+.+++++|++++++||||.+.|+++|.++|+ ++|+++|+|++++.+....++
T Consensus 139 --d~~~l~~-------~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~-----------~~~~~li~D~~~~~~~~~~~~ 198 (398)
T 1gc0_A 139 --DLQALEA-------AMTPATRVIYFESPANPNMHMADIAGVAKIAR-----------KHGATVVVDNTYCTPYLQRPL 198 (398)
T ss_dssp --CHHHHHH-------HCCTTEEEEEEESSCTTTCCCCCHHHHHHHHG-----------GGTCEEEEECTTTHHHHCCGG
T ss_pred --CHHHHHH-------hcCCCCeEEEEECCCCCCcccccHHHHHHHHH-----------HcCCEEEEECCCcccccCCch
Confidence 4444444 33467999999999999999999999999999 899999999999877643333
Q ss_pred CCCCCcEEEEccccccccCCc--ceEEEEeccccc-ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHH
Q psy16512 261 KQHQPDFISISFYKMFGYPTG--LGALIVKQKSAH-VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIIS 337 (815)
Q Consensus 261 ~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a 337 (815)
.+++|+++.|+||+|++|.+ .|+++++++.++ .+++... .+..++.+....++
T Consensus 199 -~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~ 254 (398)
T 1gc0_A 199 -ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLK-----------------------DMTGAVLSPHDAAL 254 (398)
T ss_dssp -GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHH-----------------------HHTCCCCCHHHHHH
T ss_pred -hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhh-----------------------ccCCCCCCHHHHHH
Confidence 35789999999999997765 499998877654 3322110 11235666666666
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc------c--cCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccC
Q psy16512 338 LKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLS------Y--SNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYG 409 (815)
Q Consensus 338 l~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~------~--~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~ 409 (815)
+..+++.+.. .+++..+.++.+.+.|.++. + ....|+++++.+.. ...+++++|.+.+.
T Consensus 255 ~~~~l~~~~~---~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~----~~~~~~~~~~l~~~------ 321 (398)
T 1gc0_A 255 LMRGIKTLNL---RMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQM----SQPGGMIAFELKGG------ 321 (398)
T ss_dssp HHHHHTTHHH---HHHHHHHHHHHHHHHHHTCTTEEEEEEC--------------------CCTTEEEEEETTH------
T ss_pred HHhccchHHH---HHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhC----CCCceEEEEEECCC------
Confidence 6566654322 23556666777777776641 0 01123444443321 23589999988632
Q ss_pred HHHHHHhhhcCCcEecc---CccCC---chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHH
Q psy16512 410 YSEVQNLANLKKIQLRT---GCHCN---PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDD 483 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~---g~~~~---~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ed 483 (815)
...+.+.+.+.+|.++. |...+ ++....+..++.+. +..+ |...+.||+|++.++++++
T Consensus 322 ~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~-~~~~--------------g~~~~~iRis~g~~~~~~~ 386 (398)
T 1gc0_A 322 IGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEE-RAHY--------------GISEGLVRLSVGLEDIDDL 386 (398)
T ss_dssp HHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHH-HHHT--------------TCCTTEEEEECCSSCHHHH
T ss_pred HHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHH-HHhc--------------CCCCCeEEEEeCcCCHHHH
Confidence 12366777788877655 42200 01111111122211 1111 3335899999999999999
Q ss_pred HHHHHHHHHHH
Q psy16512 484 VKYFLSFLNQY 494 (815)
Q Consensus 484 i~~lv~~L~~~ 494 (815)
|+.+.++|+++
T Consensus 387 i~~l~~al~~~ 397 (398)
T 1gc0_A 387 LADVQQALKAS 397 (398)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999999874
No 81
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.91 E-value=2.9e-23 Score=229.06 Aligned_cols=341 Identities=14% Similarity=0.092 Sum_probs=219.7
Q ss_pred ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhc--cC
Q psy16512 70 AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFE--FN 147 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~--~~ 147 (815)
.+++++.+.+++.+.+... ..+|+ .. ..++++.+++++|++ + +++|+|+++|+.+++.++. .+
T Consensus 8 ~~~~~~~v~~a~~~~~~~~-~~~~~------~~----~~~l~~~la~~~~~~--~--v~~~~ggt~al~~~~~~~~~~~~ 72 (375)
T 2fnu_A 8 EPCLDKEDKKAVLEVLNSK-QLTQG------KR----SLLFEEALCEFLGVK--H--ALVFNSATSALLTLYRNFSEFSA 72 (375)
T ss_dssp CCCCCHHHHHHHHHHHTSS-CCSSS------HH----HHHHHHHHHHHHTCS--E--EEEESCHHHHHHHHHHHSSCCCT
T ss_pred CCCCCHHHHHHHHHHHHcC-cccCC------hH----HHHHHHHHHHHhCCC--e--EEEeCCHHHHHHHHHHHhcccCC
Confidence 4567788888888776532 22332 23 789999999999986 3 9999999999999999993 38
Q ss_pred CCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHH
Q psy16512 148 EGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNT 225 (815)
Q Consensus 148 ~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~ 225 (815)
+|| |+++..+|+++.......+... .+++++++.++++.+++++ ++++++|+++++ ||.+.|+++|.+
T Consensus 73 ~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i-------~~~~~~v~~~~~---tG~~~~l~~i~~ 142 (375)
T 2fnu_A 73 DRNEIITTPISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLI-------NERTKAIVSVDY---AGKSVEVESVQK 142 (375)
T ss_dssp TSCEEEECSSSCTHHHHHHHHTTCEEEECCBCTTSSBCGGGSGGGC-------CTTEEEEEEECG---GGCCCCHHHHHH
T ss_pred CCCEEEECCCccHhHHHHHHHCCCEEEEeccCCCCCCCHHHHHhhc-------CcCceEEEEeCC---cCCccCHHHHHH
Confidence 898 8899999988766544432222 4455544456777766543 467888888766 999999999999
Q ss_pred HhhccccccccccCCCCeEEEEecccccCCCCCC--CCCCCCcEEEEccc--cccccCCcceEEEEe--cccccccCccc
Q psy16512 226 VHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLD--LKQHQPDFISISFY--KMFGYPTGLGALIVK--QKSAHVLNKTF 299 (815)
Q Consensus 226 l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~d--l~~~~~D~vv~S~~--K~~g~p~G~G~l~~~--~~~~~~l~~~~ 299 (815)
+|+ ++|+++|+|++++.+..+.. +..+ .|+++.|++ |+++ | |+|++++. +++.+.+++..
T Consensus 143 l~~-----------~~~~~li~D~a~~~~~~~~~~~~~~~-~~i~~~s~s~~K~~~-~-g~g~~~~~~~~~~~~~~~~~~ 208 (375)
T 2fnu_A 143 LCK-----------KHSLSFLSDSSHALGSEYQNKKVGGF-ALASVFSFHAIKPIT-T-AEGGAVVTNDSELHEKMKLFR 208 (375)
T ss_dssp HHH-----------HHTCEEEEECTTCTTCEETTEETTSS-SSEEEEECCTTSSSC-C-SSCEEEEESCHHHHHHHHHHT
T ss_pred HHH-----------HcCCEEEEECccccCCeECCeecccc-CCeEEEeCCCCCCcc-c-cCceEEEeCCHHHHHHHHHHH
Confidence 999 89999999999988765432 2222 367777766 9998 7 89999985 44555554433
Q ss_pred ccCceEEEEecCCcccccccCcccccc---CCCC-ChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCC
Q psy16512 300 YGGGTVKISMANENFHIKKDGLFEKFE---DGTV-NYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQ 375 (815)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~~~~~~~~~~---~gt~-~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~ 375 (815)
.++.. . . . +.+++ .+.. ....+.++ .++..+..+....++.+++++++.+.|+++
T Consensus 209 ~~~~~-~---~-~---------~~~~~~~~~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------ 267 (375)
T 2fnu_A 209 SHGML-K---K-D---------FFEGEVKSIGHNFRLNEIQSA-LGLSQLKKAPFLMQKREEAALTYDRIFKDN------ 267 (375)
T ss_dssp BTTEE-E---S-S---------SSCEEESSCCCBCCCCHHHHH-HHHHHHTTHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred hcCCc-c---c-c---------ccccccccccccCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------
Confidence 22221 0 0 0 00111 1111 11111111 122222222222388889999999999987
Q ss_pred CcEEEcCCCCCCCCCcccceEEEEEecCCCCcc-CHHHHHHhhhcCCcEeccCccCCchhhhhhcC-------CCHHHHH
Q psy16512 376 PLVELYHDTDYGESKYQGNIVNFNLLHKDGTYY-GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLG-------LSDITIK 447 (815)
Q Consensus 376 p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~-~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g-------~~~~~~~ 447 (815)
|+++++.+... ....+.++.+.++.. .+ +..++.+.|.++||.++. .|.+......++ +...+
T Consensus 268 ~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~l~~~L~~~gi~v~~--~~~p~~~~~~~~~~~~~~~~~~~~-- 338 (375)
T 2fnu_A 268 PYFTPLHPLLK--DKSSNHLYPILMHQK---FFTCKKLILESLHKRGILAQV--HYKPIYQYQLYQQLFNTAPLKSAE-- 338 (375)
T ss_dssp SSEEESGGGCS--SCCCCSCEEEEECGG---GGGGHHHHHHHHHHTTEECBC--CCCCGGGSHHHHHHHCCCCCHHHH--
T ss_pred CCccccCCCCC--CCcceEEEEEEeCcc---ccchHHHHHHHHHHCCCCccc--cccccccchhhhcCCCccCChHHH--
Confidence 78888765210 011234456666531 11 234688888899999984 344432211111 10000
Q ss_pred HHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 448 FHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 448 ~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
....+++||+++.++|++|+++++++|++++.
T Consensus 339 -----------------~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~ 370 (375)
T 2fnu_A 339 -----------------DFYHAEISLPCHANLNLESVQNIAHSVLKTFE 370 (375)
T ss_dssp -----------------HHHHHEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred -----------------HHHhCEEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence 01137899999999999999999999999764
No 82
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.91 E-value=3.7e-23 Score=234.40 Aligned_cols=343 Identities=10% Similarity=0.028 Sum_probs=221.7
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc----CCCCCceeEEecCCchhh
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF----NTDSDHYSVIFTSGATSA 136 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g~~~~~~~iv~t~g~t~a 136 (815)
.+.|..+... ..++.+.+++.+.+...........+..... ..++++.+++++ ++++++ |++|+|++++
T Consensus 71 ~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g----~~~lr~~ia~~~~~g~~~~~~~--i~~t~G~~~a 144 (449)
T 3qgu_A 71 IISLGIGDTTEPLPKYIADAMAKAAAGLATREGYSGYGAEQG----QGALREAVASTFYGHAGRAADE--IFISDGSKCD 144 (449)
T ss_dssp CEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTC----CHHHHHHHHHHHHTTTTCCGGG--EEEESCHHHH
T ss_pred EEEeeCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCC----cHHHHHHHHHHHHcCCCCCHHH--EEEccCHHHH
Confidence 3445444333 3567788888776653211011111222233 678999999998 777776 9999999999
Q ss_pred HHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhcc----------c-eEEcCchhhhcchhhhhhhhhhhhhcCCCccE
Q psy16512 137 IKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTN----------Q-IYSFSVDDARNMLNEFKESQENVENMRHSNSL 204 (815)
Q Consensus 137 l~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~----------g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~l 204 (815)
+.++ .++. ++|| |++..+.|+++......++.. . .++++.++.+..+. ++ .+++++
T Consensus 145 l~~~-~~l~-~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~ 212 (449)
T 3qgu_A 145 IARI-QMMF-GSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDL-SK---------AKRTDI 212 (449)
T ss_dssp HHHH-HHHH-CSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCG-GG---------CCCCSE
T ss_pred HHHH-HHHh-CCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCCh-hH---------cCCCCE
Confidence 9998 7777 8998 999999999988777777665 3 55666543333221 11 156899
Q ss_pred EEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccC----CCCCCCCCC----CCcEEEEcccccc
Q psy16512 205 FVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG----SNMLDLKQH----QPDFISISFYKMF 276 (815)
Q Consensus 205 v~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g----~~~~dl~~~----~~D~vv~S~~K~~ 276 (815)
|++++++||||.++|.+++.++++ .|+++|+++|+|++++.. ..+.++..+ +.++++.|++|+|
T Consensus 213 v~l~~p~NPtG~~~~~~~l~~l~~--------l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 284 (449)
T 3qgu_A 213 IFFCSPNNPTGAAATRAQLTELVN--------FARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYA 284 (449)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHH--------HHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGG
T ss_pred EEEeCCCCCCCCcCCHHHHHHHHH--------HHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhc
Confidence 999999999999999666555443 233899999999998762 222233222 4568999999999
Q ss_pred ccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHH--hhhhhH
Q psy16512 277 GYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME--KKRKSF 352 (815)
Q Consensus 277 g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~--~~~~~~ 352 (815)
| ++| +|++++++++++.....+.. .+. ........+.+.++..++.++++... ......
T Consensus 285 g-~~G~r~G~~~~~~~~~~~~~~~~~~-----------~~~-----~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 347 (449)
T 3qgu_A 285 G-FTGVRLGWTVVPKALKYANGEPVHA-----------DWN-----RVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMI 347 (449)
T ss_dssp T-CTTCCCEEEECCTTCBCTTSCBHHH-----------HHH-----HHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred C-CccceeEEEecCHHHHhhhhhhHHH-----------HHH-----HHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHH
Confidence 8 556 89999988876420000000 000 00112233566677776666665421 121122
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh-hcCCcEeccCccCC
Q psy16512 353 TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCN 431 (815)
Q Consensus 353 ~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~ 431 (815)
+++.++++++.+.|+++ +++++.+.. +.++++.+++ .+..++.+.| +++||.+++|..|.
T Consensus 348 ~~~~~~~~~l~~~L~~~-------g~~~~~~~~-------~~~~~~~~~~-----~~~~~~~~~l~~~~gI~v~pg~~f~ 408 (449)
T 3qgu_A 348 KFYKENAQILKTTFTEM-------GFSVYGGDD-------APYIWVGFPG-----KPSWDVFAEILERCNIVTTPGSGYG 408 (449)
T ss_dssp HHHHHHHHHHHHHHHHT-------TCCEEESSS-------SSEEEEECTT-----SCHHHHHHHHHHHHCEECEEGGGGC
T ss_pred HHHHHHHHHHHHHHHHC-------CCeeeCCCC-------eeEEEEECCC-----CCHHHHHHHHHHHCCEEEecchHhC
Confidence 78889999999999887 566665432 6777777762 1223455555 55699999987665
Q ss_pred chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhcCcc
Q psy16512 432 PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQADF 501 (815)
Q Consensus 432 ~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~~~~ 501 (815)
+.. .+++|||+. .+++++++++++|++++....+.
T Consensus 409 ~~~---------------------------------~~~iRis~~--~~~e~i~~~l~~l~~~~~~~~~~ 443 (449)
T 3qgu_A 409 PAG---------------------------------EGFVRASAF--GSRENILEAVRRFKEAYGKRNAS 443 (449)
T ss_dssp GGG---------------------------------TTEEEEECC--SCHHHHHHHHHHHHHHHC-----
T ss_pred CCC---------------------------------CCeEEEEec--CCHHHHHHHHHHHHHHHHhcCcc
Confidence 311 379999965 49999999999999987665544
No 83
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.91 E-value=7.8e-24 Score=236.74 Aligned_cols=330 Identities=12% Similarity=0.071 Sum_probs=219.3
Q ss_pred hhhhhhhcc---c-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc------CCCCCceeEEecC
Q psy16512 62 ICYLDYTGA---G-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF------NTDSDHYSVIFTS 131 (815)
Q Consensus 62 ~iyLd~a~~---~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~------g~~~~~~~iv~t~ 131 (815)
.++|+.+.. . ..++.+.+++.+.+.......+ .... ..++++.+++++ ++++++ |++|+
T Consensus 40 ~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~-----~~~g----~~~l~~~la~~l~~~~g~~~~~~~--v~~t~ 108 (406)
T 1xi9_A 40 VIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYG-----DSEG----LPELRKAIVEREKRKNGVDITPDD--VRVTA 108 (406)
T ss_dssp CEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCC-----CTTC----CHHHHHHHHHHHHHHHCCCCCGGG--EEEES
T ss_pred EEEecCCCCCcCCCCCCHHHHHHHHHHHhcCCCCCC-----CCCC----cHHHHHHHHHHHHHhcCCCCCHHH--EEEcC
Confidence 455665544 2 3456777777666643211111 1122 567777788776 455666 99999
Q ss_pred CchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh--hhcchhhhhhhhhhhhhcCCCccEEEE
Q psy16512 132 GATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD--ARNMLNEFKESQENVENMRHSNSLFVY 207 (815)
Q Consensus 132 g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i 207 (815)
|+++|+.+++.++. ++|| |++...+|+++.......+... .++.+.+. .++++.+++++ .+++++|++
T Consensus 109 g~~~al~~~~~~l~-~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l-------~~~~~~v~i 180 (406)
T 1xi9_A 109 AVTEALQLIFGALL-DPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKI-------TDRTKAIAV 180 (406)
T ss_dssp HHHHHHHHHHHHHC-CTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHC-------CTTEEEEEE
T ss_pred ChHHHHHHHHHHhC-CCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhh-------CcCceEEEE
Confidence 99999999999996 8898 8899988887655444332222 45555422 34666666543 357899999
Q ss_pred ecccCCCccccC---hHHHHHHhhccccccccccCCCCeEEEEecccccCCC---CCCCCC--CCC-cEEEEcccccccc
Q psy16512 208 PAESNFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN---MLDLKQ--HQP-DFISISFYKMFGY 278 (815)
Q Consensus 208 ~~~~n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~---~~dl~~--~~~-D~vv~S~~K~~g~ 278 (815)
++++||||.++| +++|.++|+ ++|+++|+|++++.+.. +.++.. .+. ++++.|+||+++
T Consensus 181 ~~p~nptG~~~~~~~l~~i~~~a~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~- 248 (406)
T 1xi9_A 181 INPNNPTGALYDKKTLEEILNIAG-----------EYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYF- 248 (406)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHH-----------HHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTC-
T ss_pred ECCCCCCCCCcCHHHHHHHHHHHH-----------HcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccC-
Confidence 999999999998 666777777 89999999999876432 122222 245 789999999998
Q ss_pred CCc--ceEEE--Eec----ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh
Q psy16512 279 PTG--LGALI--VKQ----KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK 350 (815)
Q Consensus 279 p~G--~G~l~--~~~----~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~ 350 (815)
++| +|+++ .++ ++++.+.... ... ++.+.....++.++++.......
T Consensus 249 ~~G~r~G~~~~~~~~~~~~~l~~~l~~~~------------------------~~~-~~~~~~~~~a~~~~l~~~~~~~~ 303 (406)
T 1xi9_A 249 ATGWRLGYMYFVDPENKLSEVREAIDRLA------------------------RIR-LCPNTPAQFAAIAGLTGPMDYLK 303 (406)
T ss_dssp CGGGCCEEEEEECTTCTTHHHHHHHHHHH------------------------HHT-CCSCSHHHHHHHHHHHSCCHHHH
T ss_pred CCccEEEEEEEecCchhHHHHHHHHHHHH------------------------Hhh-cCCCHHHHHHHHHHHhCCcHHHH
Confidence 667 89999 777 6655442211 111 45666677777677642211111
Q ss_pred h-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhh-cCCcEeccCc
Q psy16512 351 S-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN-LKKIQLRTGC 428 (815)
Q Consensus 351 ~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~-~~gI~v~~g~ 428 (815)
. .++..++++++.+.|+++ |+++++.+.. +.++.+.++...+ .+..++.+.|. ++||.+++|.
T Consensus 304 ~~~~~~~~~~~~l~~~L~~~------~~~~~~~~~~-------~~~~~~~~~~~~~--~~~~~l~~~l~~~~gi~v~~g~ 368 (406)
T 1xi9_A 304 EYMKKLKERRDYIYKRLNEI------PGISTTKPQG-------AFYIFPKIEVGPW--KNDKEFVLDVLHNAHVLFVHGS 368 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTS------TTEECCCCCB-------SSEECCEECSCSC--SSHHHHHHHHHHHHCEECEEGG
T ss_pred HHHHHHHHHHHHHHHHHHhC------CCCeeecCCe-------eEEEEEecCccCC--CCHHHHHHHHHHhCCEEEeCch
Confidence 2 277888899999999887 6787765432 3444445542101 22345666664 8999999886
Q ss_pred cCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 429 HCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 429 ~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.|... ..+++|+|++ +++++++++++.|.+++.+
T Consensus 369 ~f~~~---------------------------------~~~~lRis~~--~~~~~i~~~~~~l~~~l~~ 402 (406)
T 1xi9_A 369 GFGEY---------------------------------GAGHFRAVFL--PPIEILEEAMDRFEKFMKE 402 (406)
T ss_dssp GGCGG---------------------------------GTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred hcCCC---------------------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 55320 0378999998 7999999999999987743
No 84
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.91 E-value=9.7e-24 Score=235.45 Aligned_cols=307 Identities=13% Similarity=0.078 Sum_probs=200.9
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
..++++++++++|.+ + .+++++| ++|+.+++. +. ++|| |+++...|++.+. +...+...| ...++.+
T Consensus 69 ~~~l~~~la~~~g~~-~--~i~~~sG-~~ai~~~~~-l~-~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~--- 139 (403)
T 3cog_A 69 RNCLEKAVAALDGAK-Y--CLAFASG-LAATVTITH-LL-KAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCS--- 139 (403)
T ss_dssp HHHHHHHHHHHHTCS-E--EEEESCH-HHHHHHHHT-TS-CTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTT---
T ss_pred HHHHHHHHHHHhCCC-c--EEEECCH-HHHHHHHHH-Hh-CCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCC---
Confidence 788999999999986 3 3777666 589999998 75 8998 9999999987665 444455566 4444432
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCC-eEEEEecccccCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSN-CFVLLDAATYCGSNMLDLK 261 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~g-i~vivD~a~~~g~~~~dl~ 261 (815)
+++.+++ .++++|++|++++++||||.+.|+++|.++|+ ++| +++|+|++++.+.....+
T Consensus 140 d~~~l~~-------~i~~~t~~v~~~~p~nptG~~~~l~~i~~la~-----------~~g~~~livD~~~~~~~~~~~~- 200 (403)
T 3cog_A 140 KIKLLEA-------AITPETKLVWIETPTNPTQKVIDIEGCAHIVH-----------KHGDIILVVDNTFMSPYFQRPL- 200 (403)
T ss_dssp SHHHHHH-------HCCTTEEEEEEESSCTTTCCCCCHHHHHHHHT-----------SSSCCEEEEECTTTCTTTCCTT-
T ss_pred CHHHHHH-------hcCcCCeEEEEECCCCCCCeeeCHHHHHHHHH-----------HcCCCEEEEECCCcccccCCcc-
Confidence 4444444 33468999999999999999999999999999 899 999999999887532233
Q ss_pred CCCCcEEEEccccccccCCc--ceEEEEe-cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHH
Q psy16512 262 QHQPDFISISFYKMFGYPTG--LGALIVK-QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISL 338 (815)
Q Consensus 262 ~~~~D~vv~S~~K~~g~p~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al 338 (815)
.+++|+++.|+||+|++|.| +|+++++ +++.+.+++...+ ..++.+....+++
T Consensus 201 ~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~------------------------~g~~~~~~~~~~~ 256 (403)
T 3cog_A 201 ALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNS------------------------LGAVPSPIDCYLC 256 (403)
T ss_dssp TTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHH------------------------HCCCCCHHHHHHH
T ss_pred ccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHh------------------------cCCCCCHHHHHHH
Confidence 25899999999999998876 4999986 4655555332211 1224455555555
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc------c--cCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCH
Q psy16512 339 KYGFDTMEKKRKSFTNAFELSQYTYFYFKQLS------Y--SNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGY 410 (815)
Q Consensus 339 ~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~------~--~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~ 410 (815)
..+++.+.. .+++..+.+..+.+.|++.+ + ....|+++++.+. ....+++++|.+++..
T Consensus 257 ~~~l~~l~~---r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~----~~~~g~~~~~~l~~~~------ 323 (403)
T 3cog_A 257 NRGLKTLHV---RMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQ----CTGCTGMVTFYIKGTL------ 323 (403)
T ss_dssp HHHHTTHHH---HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHH----CSCCCSEEEEEESSCH------
T ss_pred HhhhhHHHH---HHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhc----CCCCceEEEEEecCCH------
Confidence 555554322 23444555555666665541 0 0011233322211 0134889999876421
Q ss_pred HHHHHhhhcCCcEecc---Cc------cCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCH
Q psy16512 411 SEVQNLANLKKIQLRT---GC------HCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNW 481 (815)
Q Consensus 411 ~~v~~~l~~~gI~v~~---g~------~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ 481 (815)
..+.+.+.+.||.++. |. +|.... +..++.+.. ..+ |...+.||+|+|.++++
T Consensus 324 ~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~---~~~~~~~~~-~~~--------------g~~~~~iRlSvg~e~~~ 385 (403)
T 3cog_A 324 QHAEIFLKNLKLFTLAESLGGFESLAELPAIMT---HASVLKNDR-DVL--------------GISDTLIRLSVGLEDEE 385 (403)
T ss_dssp HHHHHHHHHCSSSEECSCCSSSSCEEECTTTTT---TTTSCHHHH-HHH--------------TCCTTEEEEECCSSCHH
T ss_pred HHHHHHHHhCCcceEccCCCCcceeeecccccc---cccCCHHHH-Hhc--------------CCCcCeEEEEeCCCCHH
Confidence 2467778888886542 42 332211 111111111 111 23358999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy16512 482 DDVKYFLSFLNQYFL 496 (815)
Q Consensus 482 edi~~lv~~L~~~~~ 496 (815)
++|++|.++|++++.
T Consensus 386 d~i~~l~~al~~~~~ 400 (403)
T 3cog_A 386 DLLEDLDQALKAAHP 400 (403)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999988654
No 85
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.91 E-value=5e-23 Score=225.26 Aligned_cols=303 Identities=14% Similarity=0.115 Sum_probs=211.8
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-E
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-F 151 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-v 151 (815)
.++.+.+++.+.+ .....+|.. . ..++|+++++++|+++++ |++|+|+++|+.+++.++. || |
T Consensus 29 ~~~~v~~a~~~~~-~~~~~y~~~------~----~~~lr~~la~~~~~~~~~--i~~t~g~~~al~~~~~~l~---gd~V 92 (350)
T 3fkd_A 29 DKDHLEKHLVENL-NCIRHYPEP------D----AGTLRQMLAKRNSVDNNA--ILVTNGPTAAFYQIAQAFR---GSRS 92 (350)
T ss_dssp CCHHHHHHHHHTG-GGGGSCCCT------T----CHHHHHHHHHHTTCCGGG--EEEESHHHHHHHHHHHHTT---TCEE
T ss_pred CCHHHHHHHHHhH-hHHhcCCCC------c----HHHHHHHHHHHhCcCHHH--EEEcCCHHHHHHHHHHHHC---CCEE
Confidence 5577777776655 223333331 1 468999999999998887 9999999999999999986 88 8
Q ss_pred EEecCCCcchhhHHHHhhccc-eEEc-CchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhc
Q psy16512 152 IYLTDNHTSVLGMRELVKTNQ-IYSF-SVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRN 229 (815)
Q Consensus 152 v~~~~~h~s~~~~~~~~~~~g-~v~~-~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~ 229 (815)
++....|+++.......+... .+++ +.++.+++ +++++|++++++||||.++|+++|.++++
T Consensus 93 i~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~---------------~~~~~v~i~~p~nptG~~~~~~~l~~l~~- 156 (350)
T 3fkd_A 93 LIAIPSFAEYEDACRMYEHEVCFYPSNEDIGEADF---------------SNMDFCWLCNPNNPDGRLLQRTEILRLLN- 156 (350)
T ss_dssp EEEESCCHHHHHHHHHTTCEEEEEETTSCGGGSCC---------------TTCSEEEEESSCTTTCCCCCHHHHHHHHH-
T ss_pred EEeCCCcHHHHHHHHHcCCeEEEEecCCccccCcc---------------CCCCEEEEeCCCCCcCCCCCHHHHHHHHH-
Confidence 888878777654444332222 5555 43332222 35899999999999999999999999998
Q ss_pred cccccccccCCCCeEEEEecccccCCCC-----CCCCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccC
Q psy16512 230 HVFKKHFKCSRSNCFVLLDAATYCGSNM-----LDLKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGG 302 (815)
Q Consensus 230 ~~~~~~~~~~~~gi~vivD~a~~~g~~~-----~dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~ 302 (815)
.|++ .++|+|++++..... ..+...+.++++.|+||++| ++| +|++++++++++.+....
T Consensus 157 -------~~~~--~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~--- 223 (350)
T 3fkd_A 157 -------DHPD--TTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYG-IPGLRIGYIVANKDFMKRVAAFS--- 223 (350)
T ss_dssp -------HCTT--SEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHS-CGGGCCEEEECCHHHHHHHHTTC---
T ss_pred -------hCCC--CEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhcc-CcchheEeEEeCHHHHHHHHHhC---
Confidence 2223 399999998643211 11223455688999999998 445 799999887766553221
Q ss_pred ceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcC
Q psy16512 303 GTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYH 382 (815)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~ 382 (815)
..++++..+..++..+++....+....++..++++++.+.|+++ |+++++.
T Consensus 224 -----------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~ 274 (350)
T 3fkd_A 224 -----------------------TPWAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRL------DGVEVHP 274 (350)
T ss_dssp -----------------------CTTCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHS------TTEEECC
T ss_pred -----------------------CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC------CCcEECC
Confidence 12356666666666666543222233344458899999999887 7888864
Q ss_pred CCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhc-CCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCccc
Q psy16512 383 DTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANL-KKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKD 461 (815)
Q Consensus 383 ~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~-~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~ 461 (815)
+. ++++.+.++.. +..++.+.|.+ +||.+++|..|..
T Consensus 275 ~~--------~~~~~~~~~~~-----~~~~l~~~L~~~~gi~v~~g~~f~~----------------------------- 312 (350)
T 3fkd_A 275 SG--------TTFFLLRLKKG-----TAAELKKYMLEEYNMLIRDASNFRG----------------------------- 312 (350)
T ss_dssp CS--------SSEEEEEESSS-----CHHHHHHHHHHTTCEECEECTTSTT-----------------------------
T ss_pred CC--------CcEEEEECCCC-----CHHHHHHHHHHHCCEEEEeCccCCC-----------------------------
Confidence 32 67777887653 23457777777 9999999876531
Q ss_pred ccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 462 IIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 462 ~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
...+++|+|++ +.+++++++++|+++....
T Consensus 313 ----~~~~~iRis~~---~~~~~~~l~~al~~~~~~~ 342 (350)
T 3fkd_A 313 ----LDESYVRITTQ---RPAQNQLFIKALETFLEKY 342 (350)
T ss_dssp ----CCTTEEEEECC---CHHHHHHHHHHHHHHHTC-
T ss_pred ----CCCCEEEEEcC---CHHHHHHHHHHHHHHHHHh
Confidence 11379999998 8899999999999976544
No 86
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.91 E-value=6.4e-23 Score=235.93 Aligned_cols=363 Identities=12% Similarity=0.065 Sum_probs=227.0
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVS 141 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~ 141 (815)
..|+++...+..+..+..++.....+.....+........+ .+++++++++++|++.+...++||+|+|+|+.+++
T Consensus 93 p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l----e~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al 168 (504)
T 2okj_A 93 PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLM----EQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSI 168 (504)
T ss_dssp TTEESSSSCCCCHHHHHHHHHHHHHCCBSSCTTTCHHHHHH----HHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHH
T ss_pred CCEEEEccCCCCHHHHHHHHHHHhhccCCCchhhChHHHHH----HHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHH
Confidence 45777776666666655544443322111111111222222 55677999999999831224999999999999998
Q ss_pred hhhcc-------CCC-----c--EEEecCCCcchhhHHHHhhc---cc-eEEcCchhhhcchhhhhhhhhhhhhcCCCcc
Q psy16512 142 EYFEF-------NEG-----S--FIYLTDNHTSVLGMRELVKT---NQ-IYSFSVDDARNMLNEFKESQENVENMRHSNS 203 (815)
Q Consensus 142 ~al~~-------~~g-----d--vv~~~~~h~s~~~~~~~~~~---~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~ 203 (815)
.++.. ++| + ++++...|+++......++. .. .++++.++.++++.++++|+.-. ....+|+
T Consensus 169 ~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~-~~g~~~~ 247 (504)
T 2okj_A 169 MAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAK-QKGYVPF 247 (504)
T ss_dssp HHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHH-HTTCEEE
T ss_pred HHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcCCCcccEEEEecCCCCCCCHHHHHHHHHHHH-HCCCCce
Confidence 88752 245 5 77778899998776666543 12 56666666788888887664111 1122589
Q ss_pred EEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC-----CCCCC-CCCcEEEEccccccc
Q psy16512 204 LFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM-----LDLKQ-HQPDFISISFYKMFG 277 (815)
Q Consensus 204 lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~-----~dl~~-~~~D~vv~S~~K~~g 277 (815)
+|++++++|+||.+.|+++|+++|+ ++|+++|+|++++.+... ..+.. .++|++++|+|||++
T Consensus 248 ~V~~~~~~~~tG~i~~l~~I~~la~-----------~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~ 316 (504)
T 2okj_A 248 YVNATAGTTVYGAFDPIQEIADICE-----------KYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMG 316 (504)
T ss_dssp EEEECBSCSSSCCBCCHHHHHHHHH-----------HHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTC
T ss_pred EEEEeCCCCCCCCcCCHHHHHHHHH-----------HcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcC
Confidence 9999999999999999999999999 899999999998877643 22332 268999999999999
Q ss_pred cCCcceEEEEecc-cccc----cCcccccCceEEE-EecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh--
Q psy16512 278 YPTGLGALIVKQK-SAHV----LNKTFYGGGTVKI-SMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-- 349 (815)
Q Consensus 278 ~p~G~G~l~~~~~-~~~~----l~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-- 349 (815)
+|.|+|+++++++ .++. ..+.+.+++.... ......+. -+..++ .+...++++ ++.+...+
T Consensus 317 ~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~rr-----~~~l~~~a~---l~~lg~~g~~ 385 (504)
T 2okj_A 317 VLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKA---IQCGRH-----VDIFKFWLM---WKAKGTVGFE 385 (504)
T ss_dssp CCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGS---SCSSCB-----CCHHHHHHH---HHHHHHHHHH
T ss_pred CCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCC---CCCCCC-----ccHHHHHHH---HHHhhHHHHH
Confidence 8989999999874 4432 1122222221000 00000000 000111 123333333 33333222
Q ss_pred hhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC--C----Cc----cC--HHHHHHhh
Q psy16512 350 KSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD--G----TY----YG--YSEVQNLA 417 (815)
Q Consensus 350 ~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~--~----~~----~~--~~~v~~~l 417 (815)
...++..++++++.+.|+++ |+++++.+.. ...++++|...... + .. ++ ...+.+.|
T Consensus 386 ~~~~~~~~~a~~l~~~L~~~------~~~~~~~~~~-----p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 454 (504)
T 2okj_A 386 NQINKCLELAEYLYAKIKNR------EEFEMVFNGE-----PEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALM 454 (504)
T ss_dssp HHHHHHHHHHHHHHHHHTTC------TTEEESSSSC-----CSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC------CCEEEEecCC-----CCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHH
Confidence 12388899999999999987 7899986311 23567788763211 0 00 00 13466677
Q ss_pred hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEecc-CCCCHHHHHHHHHHHHHHHh
Q psy16512 418 NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYG-HASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 418 ~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g-~~~t~edi~~lv~~L~~~~~ 496 (815)
.++|+.+..+... .+ ..+++|++++ .++|++||++++++|+++..
T Consensus 455 ~~~G~~~~~~~~~---------------------------------~~-~~~~lRis~~~~~~t~edi~~~~~~l~~~~~ 500 (504)
T 2okj_A 455 MESGTTMVGYQPQ---------------------------------GD-KANFFRMVISNPAATQSDIDFLIEEIERLGQ 500 (504)
T ss_dssp HHHTSCEEEEEEE---------------------------------TT-EEEEEEECCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred HhCCcEEEEeeEE---------------------------------CC-ceEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 7777543221100 01 0268999996 89999999999999998764
No 87
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.91 E-value=4.4e-23 Score=229.92 Aligned_cols=326 Identities=12% Similarity=0.112 Sum_probs=215.1
Q ss_pred hhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhH----cC--CCCCceeEEecCCchh
Q psy16512 63 CYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQY----FN--TDSDHYSVIFTSGATS 135 (815)
Q Consensus 63 iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~----~g--~~~~~~~iv~t~g~t~ 135 (815)
++|..+... ..++.+.+++.+.+.......+.. ..++++.++++ +| +++++ |++|+|+++
T Consensus 34 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~-----------~~~l~~~la~~l~~~~g~~~~~~~--v~~t~g~~~ 100 (399)
T 1c7n_A 34 VPLSVADMEFKNPPELIEGLKKYLDETVLGYTGP-----------TEEYKKTVKKWMKDRHQWDIQTDW--IINTAGVVP 100 (399)
T ss_dssp CCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSBCC-----------CHHHHHHHHHHHHHHHCCCCCGGG--EEEESSHHH
T ss_pred eeeeecCCCCCCCHHHHHHHHHHHhcCCCCCCCC-----------cHHHHHHHHHHHHHHhCCCCChhh--EEEcCCHHH
Confidence 444444332 345677777777664322222211 34566666665 47 55666 999999999
Q ss_pred hHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc--eE--EcCch-h--hhcchhhhhhhhhhhhhcCCCccEEEE
Q psy16512 136 AIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ--IY--SFSVD-D--ARNMLNEFKESQENVENMRHSNSLFVY 207 (815)
Q Consensus 136 al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v--~~~~~-~--~~~~~~~~~~l~~~~~~~~~~t~lv~i 207 (815)
|+.+++.++. ++|| |++..+.|+++..... ..| .+ +.+.+ + .++++.++++++ .+++++|++
T Consensus 101 a~~~~~~~l~-~~gd~vl~~~p~~~~~~~~~~---~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~------~~~~~~v~~ 170 (399)
T 1c7n_A 101 AVFNAVREFT-KPGDGVIIITPVYYPFFMAIK---NQERKIIECELLEKDGYYTIDFQKLEKLSK------DKNNKALLF 170 (399)
T ss_dssp HHHHHHHHHC-CTTCEEEECSSCCTHHHHHHH---TTTCEEEECCCEEETTEEECCHHHHHHHHT------CTTEEEEEE
T ss_pred HHHHHHHHhc-CCCCEEEEcCCCcHhHHHHHH---HcCCEEEecccccCCCCEEEcHHHHHHHhc------cCCCcEEEE
Confidence 9999999997 8898 8888877777654433 344 33 33312 1 256666665432 256899999
Q ss_pred ecccCCCccccC---hHHHHHHhhccccccccccCCCCeEEEEecccccCC----CCCCCCCC-----CCcEEEEccccc
Q psy16512 208 PAESNFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS----NMLDLKQH-----QPDFISISFYKM 275 (815)
Q Consensus 208 ~~~~n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~----~~~dl~~~-----~~D~vv~S~~K~ 275 (815)
++++||||.++| +++|.++|+ ++|+++|+|++++... .+.++..+ +.++++.|+||+
T Consensus 171 ~~~~nptG~~~~~~~l~~i~~~~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~ 239 (399)
T 1c7n_A 171 CSPHNPVGRVWKKDELQKIKDIVL-----------KSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKT 239 (399)
T ss_dssp ESSBTTTTBCCCHHHHHHHHHHHH-----------HSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHH
T ss_pred cCCCCCCCcCcCHHHHHHHHHHHH-----------HcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhh
Confidence 999999999999 667777777 8999999999987532 22333322 456889999999
Q ss_pred cccCCc--ceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhh-
Q psy16512 276 FGYPTG--LGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS- 351 (815)
Q Consensus 276 ~g~p~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~- 351 (815)
|| ++| +|++++++ ++++.+.... ..+..++++..+..++.++++.....-..
T Consensus 240 ~~-~~G~r~G~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 295 (399)
T 1c7n_A 240 FN-IAGMGMSNIIIKNPDIRERFTKSR-----------------------DATSGMPFTTLGYKACEICYKECGKWLDGC 295 (399)
T ss_dssp HT-CGGGCCEEEECCCHHHHHHHHHHH-----------------------HHTTCCCCCHHHHHHHHHHHHHCHHHHHHH
T ss_pred cc-ccchheEEEEECCHHHHHHHHHHH-----------------------hhcccCCCCHHHHHHHHHHHhCChHHHHHH
Confidence 98 557 79999874 4665543221 01222356777777777777642222122
Q ss_pred HHHHHHHHHHHHHHHHh-ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhh-cCCcEeccCcc
Q psy16512 352 FTNAFELSQYTYFYFKQ-LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN-LKKIQLRTGCH 429 (815)
Q Consensus 352 ~~~~~~l~~~l~~~L~~-l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~-~~gI~v~~g~~ 429 (815)
.++..++++++.+.|++ + |+++++.+.. +.++++.++... .+..++.+.|. ++||.+++|..
T Consensus 296 ~~~~~~~~~~l~~~L~~~~------~~~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~ 359 (399)
T 1c7n_A 296 IKVIDKNQRIVKDFFEVNH------PEIKAPLIEG-------TYLQWIDFRALK---MDHKAMEEFMIHKAQIFFDEGYI 359 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHC------TTSBCCCCSB-------SSEEEEECGGGC---CCHHHHHHHHHHTTCCCCEEGGG
T ss_pred HHHHHHHHHHHHHHHHhhC------CCCeEecCCc-------eEEEEEEcccCC---CCHHHHHHHHHHhCCEEEeCccc
Confidence 27788889999999987 6 5666554331 344457775320 22345777775 79999998866
Q ss_pred CCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 430 CNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 430 ~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
|.+. ..+++|+|++.. +++++++++.|.+++.+
T Consensus 360 ~~~~---------------------------------~~~~iRis~~~~--~~~l~~~l~~l~~~l~~ 392 (399)
T 1c7n_A 360 FGDG---------------------------------GIGFERINLAAP--SSVIQESLERLNKALKD 392 (399)
T ss_dssp GCGG---------------------------------GTTEEEEECCSC--HHHHHHHHHHHHHHHHH
T ss_pred cCCC---------------------------------CCCeEEEEeccC--HHHHHHHHHHHHHHHHH
Confidence 5421 037899999864 78999999999987643
No 88
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.91 E-value=1.1e-23 Score=234.00 Aligned_cols=316 Identities=15% Similarity=0.133 Sum_probs=206.8
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc----CC--CCCceeEEecCCchhhHHHHHhhhcc
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF----NT--DSDHYSVIFTSGATSAIKTVSEYFEF 146 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g~--~~~~~~iv~t~g~t~al~~~~~al~~ 146 (815)
.++.+.+++.+.+.......+. ... ..++++.+++++ |+ ++++ |++|+|+++|+.+++.++.
T Consensus 44 ~~~~v~~a~~~~~~~~~~~y~~-----~~g----~~~l~~~la~~~~~~~g~~~~~~~--v~~~~g~~~a~~~~~~~~~- 111 (388)
T 1j32_A 44 TPKHIVEAAKAALEQGKTRYGP-----AAG----EPRLREAIAQKLQRDNGLCYGADN--ILVTNGGKQSIFNLMLAMI- 111 (388)
T ss_dssp CCHHHHHHHHHHHHTTCCSCCC-----TTC----CHHHHHHHHHHHHHHHCCCCCGGG--EEEESHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHhcCCCCCCC-----CCC----CHHHHHHHHHHHHHhcCCCCChhh--EEEcCCHHHHHHHHHHHhc-
Confidence 4566777776665432111111 112 455666666665 53 4555 9999999999999999996
Q ss_pred CCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch--hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC---
Q psy16512 147 NEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD--DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP--- 219 (815)
Q Consensus 147 ~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~--~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~--- 219 (815)
++|| |++...+|+++....+..+... .++.+.+ ..++++.+++++ .+++++|++++++||||.++|
T Consensus 112 ~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l-------~~~~~~v~~~~p~nptG~~~~~~~ 184 (388)
T 1j32_A 112 EPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAI-------TPKTKLLVFNTPSNPTGMVYTPDE 184 (388)
T ss_dssp CTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHC-------CTTEEEEEEESSCTTTCCCCCHHH
T ss_pred CCCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhc-------CcCceEEEEeCCCCCCCcCCCHHH
Confidence 8998 8899988888765444332222 4455442 235666666533 457899999999999999987
Q ss_pred hHHHHHHhhccccccccccCCCCeEEEEecccccCCC----CCCCCC-----CCCcEEEEccccccccCCc--ceEEEEe
Q psy16512 220 LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN----MLDLKQ-----HQPDFISISFYKMFGYPTG--LGALIVK 288 (815)
Q Consensus 220 l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~----~~dl~~-----~~~D~vv~S~~K~~g~p~G--~G~l~~~ 288 (815)
+++|.++|+ ++|+++|+|++++.... ..++.. .+.|+++.|+||+|| ++| +|+++++
T Consensus 185 l~~i~~~~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~-~~G~r~G~~~~~ 252 (388)
T 1j32_A 185 VRAIAQVAV-----------EAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYA-MTGWRVGFLAGP 252 (388)
T ss_dssp HHHHHHHHH-----------HHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTT-CTTTCCEEEECC
T ss_pred HHHHHHHHH-----------HcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccC-CcccceEEEEeC
Confidence 566677777 89999999999875321 112221 346899999999998 668 8999998
Q ss_pred cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHH
Q psy16512 289 QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS-FTNAFELSQYTYFYFK 367 (815)
Q Consensus 289 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~-~~~~~~l~~~l~~~L~ 367 (815)
+++++.+.+... ....+.+.....++.++++........ .++..++++++.+.|+
T Consensus 253 ~~~~~~l~~~~~------------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 308 (388)
T 1j32_A 253 VPLVKAATKIQG------------------------HSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALN 308 (388)
T ss_dssp HHHHHHHHHHHH------------------------TTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh------------------------hcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 887665533211 111233445555554555421111112 2778888999999998
Q ss_pred hccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhh-cCCcEeccCccCCchhhhhhcCCCHHHH
Q psy16512 368 QLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN-LKKIQLRTGCHCNPGSCQRFLGLSDITI 446 (815)
Q Consensus 368 ~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~-~~gI~v~~g~~~~~~~~~~~~g~~~~~~ 446 (815)
++ |+++++.+.. +.++.+.++.. + .+..++.+.|. ++||.+++|..|..
T Consensus 309 ~~------~g~~~~~~~~-------~~~~~~~~~~~-~--~~~~~~~~~l~~~~gi~v~~g~~~~~-------------- 358 (388)
T 1j32_A 309 AM------PGLECPKPDG-------AFYMFPSIAKT-G--RSSLDFCSELLDQHQVATVPGAAFGA-------------- 358 (388)
T ss_dssp TC------TTCBCCCCCB-------TTEECCBCGGG-T--CCHHHHHHHHHHHHCEECEEGGGGTC--------------
T ss_pred hC------CCCcccCCCe-------eEEEEEecCCC-C--CCHHHHHHHHHHhCCEEEeChhhhCC--------------
Confidence 87 6776664432 33444444321 1 23345777775 47999988754321
Q ss_pred HHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 447 KFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 447 ~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+++|+|++ +++++++++++.|++++.
T Consensus 359 ---------------------~~~iRis~~--~~~~~i~~~~~~l~~~l~ 385 (388)
T 1j32_A 359 ---------------------DDCIRLSYA--TDLDTIKRGMERLEKFLH 385 (388)
T ss_dssp ---------------------TTBEEEECC--SCHHHHHHHHHHHHHHHH
T ss_pred ---------------------CCcEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 268999997 689999999999998764
No 89
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.91 E-value=2.7e-23 Score=232.67 Aligned_cols=328 Identities=13% Similarity=0.046 Sum_probs=217.5
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC------CCCCceeEEecCCch
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN------TDSDHYSVIFTSGAT 134 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g------~~~~~~~iv~t~g~t 134 (815)
.++|+.+... ..++.+.+++ +.+.......+ .... ..++++.++++++ +++++ |++|+|++
T Consensus 45 ~i~l~~~~~~~~~~~~v~~a~-~~l~~~~~~y~-----~~~g----~~~l~~~la~~~~~~~g~~~~~~~--v~~~~g~t 112 (409)
T 2gb3_A 45 IHHLNIGQPDLKTPEVFFERI-YENKPEVVYYS-----HSAG----IWELREAFASYYKRRQRVDVKPEN--VLVTNGGS 112 (409)
T ss_dssp EEECSSCCCCSCCCTHHHHHH-HHTCCSSCCCC-----CTTC----CHHHHHHHHHHHHHTSCCCCCGGG--EEEESHHH
T ss_pred EEeccCCCCCCCCCHHHHHHH-HHHhcCCCCCC-----CCCC----cHHHHHHHHHHHHHHhCCCCCHHH--EEEeCCHH
Confidence 4566655544 3456777777 65543111111 1122 5677788888764 45555 99999999
Q ss_pred hhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhc-chhhhhhhhhhhhhcCCCccEEEEeccc
Q psy16512 135 SAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARN-MLNEFKESQENVENMRHSNSLFVYPAES 211 (815)
Q Consensus 135 ~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~-~~~~~~~l~~~~~~~~~~t~lv~i~~~~ 211 (815)
+|+.+++.++. ++|| |++....|+++.......+... .++.+.++.++ ++.++++ +.+++++|++++++
T Consensus 113 ~a~~~~~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~-------l~~~~~~v~~~~p~ 184 (409)
T 2gb3_A 113 EAILFSFAVIA-NPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESF-------INERTKGIVLSNPC 184 (409)
T ss_dssp HHHHHHHHHHC-CTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGG-------CCTTEEEEEEESSC
T ss_pred HHHHHHHHHhC-CCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCccHHHHHHh-------hCcCCeEEEECCCC
Confidence 99999999997 8898 8899989988766554443332 56666433333 5555543 34578999999999
Q ss_pred CCCccccC---hHHHHHHhhccccccccccCCCCeEEEEecccccCCC---CCC-CCC-CCCcEEEEccccccccCCc--
Q psy16512 212 NFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN---MLD-LKQ-HQPDFISISFYKMFGYPTG-- 281 (815)
Q Consensus 212 n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~---~~d-l~~-~~~D~vv~S~~K~~g~p~G-- 281 (815)
||||.++| +++|.++|+ ++|+++|+|++++.+.. +.+ +.. .+.|+++.|+||+|| ++|
T Consensus 185 nptG~~~~~~~l~~i~~~~~-----------~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r 252 (409)
T 2gb3_A 185 NPTGVVYGKDEMRYLVEIAE-----------RHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFS-ACGAR 252 (409)
T ss_dssp TTTCCCCCHHHHHHHHHHHH-----------HTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTT-CGGGC
T ss_pred CCCCCCcCHHHHHHHHHHHH-----------HcCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhccC-Cccce
Confidence 99999987 455666676 89999999999876532 222 222 357999999999998 567
Q ss_pred ceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhh-HHHHHHHH
Q psy16512 282 LGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS-FTNAFELS 359 (815)
Q Consensus 282 ~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~-~~~~~~l~ 359 (815)
+|++++++ ++++.+.... .... +.+.+...++.++++........ .++..+++
T Consensus 253 ~G~~~~~~~~l~~~l~~~~------------------------~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 307 (409)
T 2gb3_A 253 VGCLITRNEELISHAMKLA------------------------QGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERV 307 (409)
T ss_dssp CEEEECSCHHHHHHHHHHH------------------------HHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEECcHHHHHHHHHHH------------------------hccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 89999998 7766553221 0111 45666666666666431111122 27778888
Q ss_pred HHHHHHHHhccccCCCCcEEE-cCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC------CcEeccCccCCc
Q psy16512 360 QYTYFYFKQLSYSNGQPLVEL-YHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK------KIQLRTGCHCNP 432 (815)
Q Consensus 360 ~~l~~~L~~l~~~~~~p~~~l-~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~------gI~v~~g~~~~~ 432 (815)
+++.+.|+++ ++++ ..+. .+.++.+.+++ .+..++.+.|.++ ||.+++|..|..
T Consensus 308 ~~l~~~L~~~-------g~~~~~~~~-------~~~~~~~~~~~-----~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~ 368 (409)
T 2gb3_A 308 ETVLKKLEEH-------GLKRFTKPS-------GAFYITAELPV-----EDAEEFARWMLTDFNMDGETTMVAPLRGFYL 368 (409)
T ss_dssp HHHHHHHHHT-------TCCCBCCCS-------BSSEEEEECSS-----SCHHHHHHHHHHSCCBTTEEEECEEGGGGCS
T ss_pred HHHHHHHHHc-------CceeeeCCC-------eeEEEEEEeCC-----CCHHHHHHHHHhccccccCcEEEeCchHhCC
Confidence 8999999876 4555 3332 24555556652 2334577777655 999998765432
Q ss_pred hhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 433 GSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 433 ~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.. +...+++|++++ ++++++++++++|++++.+
T Consensus 369 ~~------------------------------~~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~ 401 (409)
T 2gb3_A 369 TP------------------------------GLGKKEIRIACV--LEKDLLSRAIDVLMEGLKM 401 (409)
T ss_dssp ST------------------------------TTTSSEEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred CC------------------------------CCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHH
Confidence 10 111478999998 7999999999999988753
No 90
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.91 E-value=7.3e-24 Score=236.77 Aligned_cols=324 Identities=10% Similarity=0.062 Sum_probs=217.3
Q ss_pred ccchhhHHHHHHHHhhc-cccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCC---CceeEEecCCchhhHHHHHhhhccC
Q psy16512 72 VYSQSQMNQTIEQLKEN-IFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDS---DHYSVIFTSGATSAIKTVSEYFEFN 147 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~-~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~---~~~~iv~t~g~t~al~~~~~al~~~ 147 (815)
..++.+.+++.+.+... .+..+.. ...... .+++.+.+++++|.+. ++ |++|+|+++|+.+++.++. +
T Consensus 53 ~~~~~v~~a~~~~~~~~~~~~y~~~-~g~~~l----~~~l~~~l~~~~g~~~~~~~~--i~~~~g~~~a~~~~~~~l~-~ 124 (407)
T 3nra_A 53 EPTPGAFDLFSAGVQSGGVQAYTEY-RGDLGI----RDLLAPRLAAFTGAPVDARDG--LIITPGTQGALFLAVAATV-A 124 (407)
T ss_dssp CCCTTHHHHHHHHHHHTHHHHSCCT-TCCHHH----HHHHHHHHHHHHTSCCCTTTS--EEEESHHHHHHHHHHHTTC-C
T ss_pred CCcHHHHHHHHHHHhcCCCCCcCCC-CCCHHH----HHHHHHHHHHHhCCCCCCCCc--EEEeCCcHHHHHHHHHHhC-C
Confidence 46677888887766532 1111110 112233 6678888888888752 45 9999999999999999997 8
Q ss_pred CCc-EEEecCCCcchhhHHHHhhccc-eEEcC------chhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC
Q psy16512 148 EGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFS------VDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP 219 (815)
Q Consensus 148 ~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~------~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~ 219 (815)
+|| |++....|+++....+..+... .++.+ .+..++++.++++++ +++++|++++++||||.++|
T Consensus 125 ~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~-------~~~~~v~~~~p~nptG~~~~ 197 (407)
T 3nra_A 125 RGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK-------AGARVFLFSNPNNPAGVVYS 197 (407)
T ss_dssp TTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHH-------TTCCEEEEESSCTTTCCCCC
T ss_pred CCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHh-------hCCcEEEEcCCCCCCCcccC
Confidence 999 8888888887765555443332 55652 344567777776553 47899999999999999999
Q ss_pred ---hHHHHHHhhccccccccccCCCCeEEEEecccccCC----CCCCCC-----CCCCcEEEEccccccccCCc--ceEE
Q psy16512 220 ---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS----NMLDLK-----QHQPDFISISFYKMFGYPTG--LGAL 285 (815)
Q Consensus 220 ---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~----~~~dl~-----~~~~D~vv~S~~K~~g~p~G--~G~l 285 (815)
+++|.++|+ ++|+++|+|++|+.+. ....+. ..+.++++.|+||+|| ++| +|++
T Consensus 198 ~~~l~~i~~~~~-----------~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~ 265 (407)
T 3nra_A 198 AEEIGQIAALAA-----------RYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTES-LSGYRLGVA 265 (407)
T ss_dssp HHHHHHHHHHHH-----------HHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTC-CGGGCCEEE
T ss_pred HHHHHHHHHHHH-----------HcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccC-CCeeeEEEE
Confidence 666777777 8999999999987632 222222 2345688999999998 446 7999
Q ss_pred EEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHH
Q psy16512 286 IVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK-KRKSFTNAFELSQYTYF 364 (815)
Q Consensus 286 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~-~~~~~~~~~~l~~~l~~ 364 (815)
+.++++++.+.... +....+.+.....++..+++.... .....++.+++++++.+
T Consensus 266 ~~~~~~~~~l~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 321 (407)
T 3nra_A 266 FGSRAIIARMEKLQ------------------------AIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLH 321 (407)
T ss_dssp EECHHHHHHHHHHH------------------------HHHTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHHH------------------------hhhccCCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 99887766553221 111223344444444444331111 11122777888899999
Q ss_pred HHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCH
Q psy16512 365 YFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSD 443 (815)
Q Consensus 365 ~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~ 443 (815)
.|+++ |+++++.+.. +.++.+.++.. ..+..++.+.| +++||.+++|..|.+.
T Consensus 322 ~L~~~------~~~~~~~~~~-------~~~~~~~~~~~---~~~~~~~~~~l~~~~gi~v~~g~~~~~~---------- 375 (407)
T 3nra_A 322 VLRGC------EGVFARTPQA-------GSYLFPRLPKL---AVAPAEFVKILRLQAGVVVTPGTEFSPH---------- 375 (407)
T ss_dssp HHHTS------TTCBCCCCSB-------SSEECCBCCCB---SSCHHHHHHHHHHHHCEECEEGGGTCTT----------
T ss_pred HHhcC------CCceeccCCe-------eEEEEEeCCCC---CCCHHHHHHHHHHhCCEEEeCchhhCCC----------
Confidence 99887 6777665432 45665555431 12334577777 4579999998766531
Q ss_pred HHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 444 ITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 444 ~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
..+++|+|++. +++++++++++|.+++.+
T Consensus 376 -----------------------~~~~iRis~~~--~~~~i~~~~~~l~~~~~~ 404 (407)
T 3nra_A 376 -----------------------TADSVRLNFSQ--DHEAAVAAARRIVTLVER 404 (407)
T ss_dssp -----------------------CTTBEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred -----------------------CCCEEEEEeCC--CHHHHHHHHHHHHHHHHH
Confidence 13789999984 899999999999998753
No 91
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.91 E-value=1e-23 Score=235.25 Aligned_cols=313 Identities=13% Similarity=0.080 Sum_probs=204.8
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHH-HHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMR-ELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~-~~~~~~g--~v~~~~~~~~ 182 (815)
.+++++++++++|.+ + .++++++++|+.+++.++. ++|| |+++...|+++.... ..+...| .+.++.+
T Consensus 66 ~~~l~~~la~~~g~~-~---~i~~~sG~~a~~~~l~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--- 137 (398)
T 2rfv_A 66 TDALEKKLAVLERGE-A---GLATASGISAITTTLLTLC-QQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA--- 137 (398)
T ss_dssp HHHHHHHHHHHHTCS-E---EEEESSHHHHHHHHHHHHC-CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT---
T ss_pred HHHHHHHHHHHhCCC-c---EEEECCHHHHHHHHHHHHh-CCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC---
Confidence 889999999999986 2 5555666799999999987 8898 899999998876543 3334455 3444332
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .+.+++++|++++++||||.+.|+++|.++|+ ++|+++|+|++++.+.....+ .
T Consensus 138 d~~~l~~-------~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~-----------~~~~~li~De~~~~~~~~~~~-~ 198 (398)
T 2rfv_A 138 KPEEIRA-------AMRPETKVVYIETPANPTLSLVDIETVAGIAH-----------QQGALLVVDNTFMSPYCQQPL-Q 198 (398)
T ss_dssp SHHHHHH-------HCCTTEEEEEEESSBTTTTBCCCHHHHHHHHH-----------HTTCEEEEECTTTCTTTCCGG-G
T ss_pred CHHHHHH-------hcCCCCeEEEEECCCCCCCcccCHHHHHHHHH-----------HcCCEEEEECCCcccccCCch-h
Confidence 4444544 33467999999999999999999999999999 899999999999877643222 3
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEeccccc-ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQKSAH-VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|+++.|+||+|++|.+ .|+++++++.++ .+++... .+..++.+....+++.
T Consensus 199 ~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~ 255 (398)
T 2rfv_A 199 LGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLK-----------------------DITGGCMSPFNAWLTL 255 (398)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHH-----------------------HTTCCCCCHHHHHHHH
T ss_pred hCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHH-----------------------hCCCCCCCHHHHHHHH
Confidence 5789999999999987765 499999987764 3322211 1113466666666666
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc------c--cCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHH
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLS------Y--SNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYS 411 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~------~--~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~ 411 (815)
++++.+.. .+++..+.++.+.+.|.+.. + ....|+++++.+.. ...+++++|.+++.. . ...
T Consensus 256 ~~l~~~~~---~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~----~~~g~~~~~~~~~~~-~--~~~ 325 (398)
T 2rfv_A 256 RGVKTLGI---RMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQM----SLPGGIISFEIAGGL-E--AGR 325 (398)
T ss_dssp HHHTTHHH---HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHC----SSCCSEEEEEETTHH-H--HHH
T ss_pred hhhhhHHH---HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhC----CCCceEEEEEEcCCH-H--HHH
Confidence 66654322 22455566667777776641 0 00112233222210 135889999886320 0 112
Q ss_pred HHHHhhhcCCcEeccCccCCc---hhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHH
Q psy16512 412 EVQNLANLKKIQLRTGCHCNP---GSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFL 488 (815)
Q Consensus 412 ~v~~~l~~~gI~v~~g~~~~~---~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv 488 (815)
.+.+.+...||.++.|..++. .....+..++.+.+ .. .|...+.||+|++.+++++++++++
T Consensus 326 ~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~-~~--------------~g~~~~~iRls~~~~~~~~~i~~l~ 390 (398)
T 2rfv_A 326 RMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEER-LK--------------AGITDGLIRLSVGLEDPEDIINDLE 390 (398)
T ss_dssp HHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHH-HH--------------TTCCTTEEEEECCSSCHHHHHHHHH
T ss_pred HHHHhCCcceeccCCCCcceeeecccccccccCCHHHH-Hh--------------cCCCCCeEEEEecCCCHHHHHHHHH
Confidence 244445556888888854320 11111111222111 11 1233589999999999999999999
Q ss_pred HHHHHH
Q psy16512 489 SFLNQY 494 (815)
Q Consensus 489 ~~L~~~ 494 (815)
++|+++
T Consensus 391 ~al~~~ 396 (398)
T 2rfv_A 391 HAIRKA 396 (398)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 999864
No 92
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.90 E-value=5.2e-23 Score=230.52 Aligned_cols=322 Identities=11% Similarity=0.063 Sum_probs=205.7
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
.+++++++++++|++ + +++++|+++|+.+++.++. ++|| |+++..+|++++. +...+...| .+.++.+
T Consensus 58 ~~~l~~~la~~~g~~--~--~~~~~~gt~a~~~al~~l~-~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--- 129 (412)
T 2cb1_A 58 AKALEERLKALEGAL--E--AVVLASGQAATFAALLALL-RPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE--- 129 (412)
T ss_dssp HHHHHHHHHHHHTCS--E--EEEESSHHHHHHHHHHTTC-CTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSS---
T ss_pred HHHHHHHHHHHhCCC--c--EEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC---
Confidence 889999999999985 3 8999999999999999986 8898 8999999987665 333345555 3333322
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
++.+++ .+.+++++|++++++||||.+.|+++|.++|+ ++|+++|+|++++.+........
T Consensus 130 -~~~l~~-------~i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~-----------~~~~~li~D~~~~~~~~~~~~~~ 190 (412)
T 2cb1_A 130 -PEAVRE-------ALSAKTRAVFVETVANPALLVPDLEALATLAE-----------EAGVALVVDNTFGAAGALCRPLA 190 (412)
T ss_dssp -HHHHHH-------HCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH-----------HHTCEEEEECGGGTTTTSCCGGG
T ss_pred -HHHHHH-------HhccCCeEEEEeCCCCCCcccccHHHHHHHHH-----------HcCCEEEEECCCccccccCCccc
Confidence 344443 34467999999999999999999999999999 89999999999988722222224
Q ss_pred CCCcEEEEccccccccCCc-ceEEEEeccccc-----ccCcccccCceEEEEecC--CcccccccCccccccCC-CCChh
Q psy16512 263 HQPDFISISFYKMFGYPTG-LGALIVKQKSAH-----VLNKTFYGGGTVKISMAN--ENFHIKKDGLFEKFEDG-TVNYL 333 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G-~G~l~~~~~~~~-----~l~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~g-t~~~~ 333 (815)
.++|+++.|+||++++|.+ +|++++.++... .+.+....+.. ....+ ..+......... ...| ..+..
T Consensus 191 ~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~r~~~~-~~~g~~~~~~ 267 (412)
T 2cb1_A 191 WGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQI--PWEALRARCFPERVRTLGL-SLCGMALSPF 267 (412)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC---------HHHHGGGHHHHHHHHHHT-TTTCCCCCHH
T ss_pred cCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccc--hhhccchHHHHHHHHHHHH-HhcCCCCChH
Confidence 5799999999999987866 788888763311 11111111100 00000 000000000000 0012 22323
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCCC---------CcccceEEEEEecC
Q psy16512 334 AIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGES---------KYQGNIVNFNLLHK 403 (815)
Q Consensus 334 ~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~~---------~~~~~i~~f~~~~~ 403 (815)
..+.+..+++.+ ....++..++++++.+.|.+. +++. ++.|.....+ ...+++++|.+ +
T Consensus 268 ~a~~~~~~l~~l---~~~~~~~~~~~~~l~~~L~~~------~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~- 336 (412)
T 2cb1_A 268 NAYLLFQGLETV---ALRVARMSETARFLAERLQGH------PKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G- 336 (412)
T ss_dssp HHHHHHHHGGGH---HHHHHHHHHHHHHHHHHHHTC------TTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S-
T ss_pred HhHHHHcCCchH---HHHHHHHHHHHHHHHHHHHcC------CCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C-
Confidence 332222333322 222366678899999999887 6666 3333210000 13588999998 4
Q ss_pred CCCccCHHHHHHhhhcCCcEeccCc---------cCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEe
Q psy16512 404 DGTYYGYSEVQNLANLKKIQLRTGC---------HCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRIS 474 (815)
Q Consensus 404 ~~~~~~~~~v~~~l~~~gI~v~~g~---------~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs 474 (815)
+. ..+.+.+++.||.+ .++ +|...... .++.. .+..+ |...+.||+|
T Consensus 337 ~~-----~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~---~~~~~-~~~~~--------------g~~~~~iR~s 392 (412)
T 2cb1_A 337 DL-----ERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHS---RLKEE-ARLQA--------------GVTPGLVRVS 392 (412)
T ss_dssp SH-----HHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTT---TSCHH-HHHHT--------------TCCTTEEEEE
T ss_pred CH-----HHHHHHHHhCCeee-ecccCCCcceeecCcccccc---cCCHH-HHHhc--------------CCCCCeEEEE
Confidence 32 24788888999999 874 55433211 12221 11121 2335899999
Q ss_pred ccCCCCHHHHHHHHHHHHH
Q psy16512 475 YGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 475 ~g~~~t~edi~~lv~~L~~ 493 (815)
++.++++++|++++++|++
T Consensus 393 ~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 393 VGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp CCSSCHHHHHHHHHHHHHC
T ss_pred eccCCHHHHHHHHHHHHhh
Confidence 9999999999999999874
No 93
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.90 E-value=7.3e-23 Score=229.54 Aligned_cols=326 Identities=10% Similarity=0.045 Sum_probs=218.4
Q ss_pred cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC------------CCCCceeEEecCCchhhHH
Q psy16512 71 GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN------------TDSDHYSVIFTSGATSAIK 138 (815)
Q Consensus 71 ~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g------------~~~~~~~iv~t~g~t~al~ 138 (815)
..+++.+.+++.+.+..... . .+..... ..++|+.++++++ +++++ |++|+|+++|+.
T Consensus 49 ~~~~~~v~~a~~~~~~~~~~---~-~y~~~~~----~~~lr~~la~~~~~~~~~~~~~~~~~~~~~--v~~~~g~~~al~ 118 (416)
T 1bw0_A 49 LLTSAAQIKKLKEAIDSQEC---N-GYFPTVG----SPEAREAVATWWRNSFVHKEELKSTIVKDN--VVLCSGGSHGIL 118 (416)
T ss_dssp SCCCHHHHHHHHHHHHTTCS---S-SCCCTTC----CHHHHHHHHHHHHHHHCCSTTTGGGCCGGG--EEEESHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhCCcc---C-CcCCCCC----CHHHHHHHHHHHHhhhcccccCCCCCCcce--EEEeCChHHHHH
Confidence 35667788887776643210 0 0111122 6788999999888 66776 999999999999
Q ss_pred HHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch--hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCC
Q psy16512 139 TVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD--DARNMLNEFKESQENVENMRHSNSLFVYPAESNFS 214 (815)
Q Consensus 139 ~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~--~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t 214 (815)
+++.++. ++|| |++...+|+++.......+... .++.+.+ ..++++.+++++ .++++++++++++|||
T Consensus 119 ~~~~~l~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l-------~~~~~~v~i~~p~npt 190 (416)
T 1bw0_A 119 MAITAIC-DAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLK-------DDKTKLLIVTNPSNPC 190 (416)
T ss_dssp HHHHHHC-CTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHC-------CTTEEEEEEESSCTTT
T ss_pred HHHHHhC-CCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHh-------ccCCeEEEEeCCCCCC
Confidence 9999997 8898 8888888887655444332222 4555443 235666665533 4578999999999999
Q ss_pred ccccC---hHHHHHHhhccccccccccCCCCeEEEEeccccc----CC----CCCCCCCC---CCcEEEEccccccccCC
Q psy16512 215 GTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC----GS----NMLDLKQH---QPDFISISFYKMFGYPT 280 (815)
Q Consensus 215 G~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~----g~----~~~dl~~~---~~D~vv~S~~K~~g~p~ 280 (815)
|.++| +++|.++|+ ++|+++|+|++++. +. ...++..+ +.++++.|+||+|+ .+
T Consensus 191 G~~~~~~~l~~i~~~~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~ 258 (416)
T 1bw0_A 191 GSNFSRKHVEDIVRLAE-----------ELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLV-VP 258 (416)
T ss_dssp CCCCCHHHHHHHHHHHH-----------HHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTS-CG
T ss_pred CcccCHHHHHHHHHHHH-----------HcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCC-CC
Confidence 99999 667777777 89999999999875 22 12233222 23577889999998 44
Q ss_pred c--ceEEEEecc--cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH--HhhhhhHHH
Q psy16512 281 G--LGALIVKQK--SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM--EKKRKSFTN 354 (815)
Q Consensus 281 G--~G~l~~~~~--~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l--~~~~~~~~~ 354 (815)
| +|+++++++ +++.+...... .....++++.....++.++++.. .......++
T Consensus 259 Glr~G~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 317 (416)
T 1bw0_A 259 GWRLGWLLYVDPHGNGPSFLEGLKR---------------------VGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAK 317 (416)
T ss_dssp GGCCEEEEEECTTCSCHHHHHHHHH---------------------HHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred CceEEEEEeeCchhhHHHHHHHHHH---------------------HhccccCCCcHHHHHHHHHHhcccHHHHHHHHHH
Confidence 7 799999874 44333211000 00123466777777777777632 111112277
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC-CCccCHHHHHHhh-hcCCcEeccCccCCc
Q psy16512 355 AFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD-GTYYGYSEVQNLA-NLKKIQLRTGCHCNP 432 (815)
Q Consensus 355 ~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~-~~~~~~~~v~~~l-~~~gI~v~~g~~~~~ 432 (815)
.+++++++.+.|+++ |++.++.+.. +.++++.++... ....+..++.+.| .++||.+++|..|..
T Consensus 318 ~~~~~~~l~~~L~~~------~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~ 384 (416)
T 1bw0_A 318 IEESAMYLYNHIGEC------IGLAPTMPRG-------AMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA 384 (416)
T ss_dssp HHHHHHHHHHHHTTS------TTEEECCCCB-------TTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTC
T ss_pred HHHHHHHHHHHHHhC------CCCcccCCCe-------eEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCC
Confidence 888899999999887 6888775542 667777775310 0001233466655 689999998764321
Q ss_pred hhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 433 GSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 433 ~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+++|+|++ .++++++++++.|.+++.+
T Consensus 385 -----------------------------------~~~iRis~~--~~~e~l~~~l~~l~~~l~~ 412 (416)
T 1bw0_A 385 -----------------------------------PGFTRLTTT--RPVEVYREAVERIKAFCQR 412 (416)
T ss_dssp -----------------------------------TTEEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------CCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 278999996 5899999999999988754
No 94
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.90 E-value=2.5e-23 Score=233.06 Aligned_cols=295 Identities=11% Similarity=0.076 Sum_probs=203.8
Q ss_pred HHHHHHHHHhHc----CC--CC-CceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcC
Q psy16512 107 IDQMRTKILQYF----NT--DS-DHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFS 177 (815)
Q Consensus 107 ~~~~r~~la~~~----g~--~~-~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~ 177 (815)
..++++.+++++ |. ++ ++ |++|+|+++|+.+++.++. ++|| |++....|+++.......+... .++.+
T Consensus 77 ~~~l~~~ia~~~~~~~g~~~~~~~~--v~~t~g~~~a~~~~~~~~~-~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 153 (412)
T 2x5d_A 77 IPRLRRAISHWYRDRYDVQIDPESE--AIVTIGSKEGLAHLMLATL-DHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLV 153 (412)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCTTTS--EEEESCHHHHHHHHHHHHC-CTTCEEEEEESCCHHHHHHHHHHTCEEEEEECS
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCcC--EEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCchhHHHHHHHcCCEEEEeecC
Confidence 667888888888 75 44 45 9999999999999999997 8898 8898988887765554433222 55666
Q ss_pred ch-h-hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChH---HHHHHhhccccccccccCCCCeEEEEecccc
Q psy16512 178 VD-D-ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLS---WCNTVHRNHVFKKHFKCSRSNCFVLLDAATY 252 (815)
Q Consensus 178 ~~-~-~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~---~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~ 252 (815)
.+ + ..+++.+++++ .+++++|++++++||||.++|.+ +|.++|+ ++|+++|+|++++
T Consensus 154 ~~~~~~~d~~~l~~~i-------~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-----------~~~~~li~De~~~ 215 (412)
T 2x5d_A 154 PGIDFFNELERAIRES-------IPKPRMMILGFPSNPTAQCVELDFFERVVALAK-----------QYDVMVVHDLAYA 215 (412)
T ss_dssp TTSCHHHHHHHHHHTE-------ESCCSEEEEESSCTTTCCCCCHHHHHHHHHHHH-----------HHTCEEEEECTTT
T ss_pred CccCCCCCHHHHHHhc-------ccCceEEEECCCCCCCCCcCCHHHHHHHHHHHH-----------HcCCEEEEecccc
Confidence 53 2 24556665533 36789999999999999999865 4566666 8999999999987
Q ss_pred cCC----CCCCCCC----CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCcc
Q psy16512 253 CGS----NMLDLKQ----HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLF 322 (815)
Q Consensus 253 ~g~----~~~dl~~----~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 322 (815)
.+. .+.++.. .+.++++.|+||+|| ++| +|++++++++++.+....
T Consensus 216 ~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~----------------------- 271 (412)
T 2x5d_A 216 DIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYN-MAGWRIGFMVGNPELVSALARIK----------------------- 271 (412)
T ss_dssp TCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCS-CTTSCCEEEEECHHHHHHHHHHH-----------------------
T ss_pred ccccCCCCCCChhhccCccCcEEEEecCccccC-CcccceEEEEcCHHHHHHHHHHH-----------------------
Confidence 643 1223222 356899999999998 557 799999888766553211
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEe
Q psy16512 323 EKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLL 401 (815)
Q Consensus 323 ~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~ 401 (815)
....++.+.++..++.++++........+ ++.+++++++.+.|+++ +++++.+. .+.++++.++
T Consensus 272 -~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~-------~g~~~~~~~~ 336 (412)
T 2x5d_A 272 -SYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA-------GWMVENPK-------ASMYVWAKIP 336 (412)
T ss_dssp -HHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH-------TCCCCCCS-------BSSEEEEECC
T ss_pred -hhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-------CCEecCCC-------eeeEEEEEcC
Confidence 11234566777777666665322111222 77888889999999876 45544332 1456777775
Q ss_pred cCCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCC
Q psy16512 402 HKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASN 480 (815)
Q Consensus 402 ~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t 480 (815)
.... ..+..++.+.| .++||.+++|..|... ..+++|+|++. +
T Consensus 337 ~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~---------------------------------~~~~iRis~~~--~ 380 (412)
T 2x5d_A 337 EPYA-HLGSLEFAKKLLQDAKVSVSPGIGFGDY---------------------------------GDDHVRFALIE--N 380 (412)
T ss_dssp TTTG-GGCHHHHHHHHHHHHCEECEEGGGGCGG---------------------------------GTTEEEEECCS--C
T ss_pred CccC-CCCHHHHHHHHHHHCCEEEeCchhhCCC---------------------------------CCCeEEEEecC--C
Confidence 3110 00234566666 5679999988765321 03789999996 8
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy16512 481 WDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 481 ~edi~~lv~~L~~~~~~ 497 (815)
+++++.+++.|.+++.+
T Consensus 381 ~~~l~~~l~~l~~~l~~ 397 (412)
T 2x5d_A 381 RDRLRQAVRGIKAMFRA 397 (412)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998755
No 95
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.90 E-value=2.1e-23 Score=234.73 Aligned_cols=304 Identities=14% Similarity=0.113 Sum_probs=203.9
Q ss_pred HHHHHHHHHhHc----C---CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcC
Q psy16512 107 IDQMRTKILQYF----N---TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFS 177 (815)
Q Consensus 107 ~~~~r~~la~~~----g---~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~ 177 (815)
..++|+.+++++ | +++++ |++|+|+++|+.+++.++. ++|| |++..+.|+++.......+... .++.+
T Consensus 87 ~~~lr~~la~~l~~~~g~~~~~~~~--v~~t~G~~~al~~~~~~l~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~ 163 (425)
T 1vp4_A 87 DPVLKQQILKLLERMYGITGLDEDN--LIFTVGSQQALDLIGKLFL-DDESYCVLDDPAYLGAINAFRQYLANFVVVPLE 163 (425)
T ss_dssp CHHHHHHHHHHHHHHHCCCSCCGGG--EEEEEHHHHHHHHHHHHHC-CTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEE
T ss_pred CHHHHHHHHHHHHhccCCCCCCccc--EEEeccHHHHHHHHHHHhC-CCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccC
Confidence 667888888888 8 55666 9999999999999999997 8898 8888888777654443322222 45555
Q ss_pred chhhhcchhhhhhhhhhhhh-cCCCccEE-EEecccCCCccccChHH---HHHHhhccccccccccCCCCeEEEEecccc
Q psy16512 178 VDDARNMLNEFKESQENVEN-MRHSNSLF-VYPAESNFSGTKYPLSW---CNTVHRNHVFKKHFKCSRSNCFVLLDAATY 252 (815)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~-~~~~t~lv-~i~~~~n~tG~~~~l~~---I~~l~~~~~~~~~~~~~~~gi~vivD~a~~ 252 (815)
.+ .++++.++++++..... ..+++++| ++++++||||.++|.++ |.++|+ ++|+++|+|++++
T Consensus 164 ~~-~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~-----------~~~~~li~De~~~ 231 (425)
T 1vp4_A 164 DD-GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAE-----------KYDLFIVEDDPYG 231 (425)
T ss_dssp TT-EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHH-----------HTTCEEEEECSST
T ss_pred CC-CCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHH-----------HcCCEEEEECCCc
Confidence 43 36777776655311000 01257887 58999999999999665 555666 8999999999987
Q ss_pred cCC----CCCCCC---CCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccc
Q psy16512 253 CGS----NMLDLK---QHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFE 323 (815)
Q Consensus 253 ~g~----~~~dl~---~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 323 (815)
... .+.++. ..+.++++.|+||+|+ | | +|++++++++++.+....
T Consensus 232 ~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~-G~r~G~~~~~~~~~~~l~~~~------------------------ 285 (425)
T 1vp4_A 232 ALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-P-GLRIGMVAGSKEFIRKIVQAK------------------------ 285 (425)
T ss_dssp TCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-G-GGCEEEEECCHHHHHHHHHHH------------------------
T ss_pred cccCCCCCCcCHHHhCCCCCEEEEeccccccc-c-ccceEEEeeCHHHHHHHHHHh------------------------
Confidence 632 122221 2245788999999999 6 6 699999987766553221
Q ss_pred cccCCCCChhHHHHHHHHHHHH--Hhhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEE
Q psy16512 324 KFEDGTVNYLAIISLKYGFDTM--EKKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNL 400 (815)
Q Consensus 324 ~~~~gt~~~~~~~al~~al~~l--~~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~ 400 (815)
.....+.+.++..++.++++.. ...-.. .++..++++++.+.|+++. .+.++++++.+.. +.++++.+
T Consensus 286 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~g~~~~~~~~-------g~~~~~~~ 356 (425)
T 1vp4_A 286 QSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYF--SDIPGVKWVKSEG-------GLFIWLTL 356 (425)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHS--TTSTTCEECCCSB-------SSEEEEEC
T ss_pred hhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCceEEecCCc-------cEEEEEEc
Confidence 0111244666777776776652 221122 2677788888999887641 0001577765432 67888888
Q ss_pred ec-CCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCC
Q psy16512 401 LH-KDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHAS 479 (815)
Q Consensus 401 ~~-~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~ 479 (815)
+. .+... +.+.|.++||.+++|..|.... ...+++|||++..
T Consensus 357 ~~~~~~~~-----l~~~l~~~gi~v~~g~~f~~~~-------------------------------~~~~~iRis~~~~- 399 (425)
T 1vp4_A 357 PEGFDTWE-----MFEYAKRKKVFYVPGRVFKVYD-------------------------------EPSPSMRLSFCLP- 399 (425)
T ss_dssp CTTCCTTT-----THHHHHHHTEECEEGGGGCTTC-------------------------------CCCSEEEEECSSS-
T ss_pred CCCCCHHH-----HHHHHHHCCCEEECchhhcCCC-------------------------------CCCCeEEEEeCCC-
Confidence 63 23332 6667767799999886543210 1137899999975
Q ss_pred CHHHHHHHHHHHHHHHhh
Q psy16512 480 NWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 480 t~edi~~lv~~L~~~~~~ 497 (815)
+++++++++++|++++.+
T Consensus 400 ~~e~i~~~l~~l~~~l~~ 417 (425)
T 1vp4_A 400 PDEKIVEGIKRLREVVLE 417 (425)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 899999999999987653
No 96
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.90 E-value=9e-23 Score=226.74 Aligned_cols=319 Identities=11% Similarity=0.062 Sum_probs=211.3
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHH-HHHHHHhHc----C--CCCCceeEEecCCchhhHHHHHhhhc
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQ-MRTKILQYF----N--TDSDHYSVIFTSGATSAIKTVSEYFE 145 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~-~r~~la~~~----g--~~~~~~~iv~t~g~t~al~~~~~al~ 145 (815)
.++.+.+++.+.+.......+.. ..+ +|+.+++++ | +++++ |++|+|+++|+.+++.++.
T Consensus 42 ~~~~v~~a~~~~~~~~~~~y~~~-----------~~~~lr~~la~~l~~~~g~~~~~~~--v~~t~g~~~al~~~~~~l~ 108 (390)
T 1d2f_A 42 TAPCIIEALNQRLMHGVFGYSRW-----------KNDEFLAAIAHWFSTQHYTAIDSQT--VVYGPSVIYMVSELIRQWS 108 (390)
T ss_dssp CCHHHHHHHHHHHTTCCCCCCCS-----------CCHHHHHHHHHHHHHHSCCCCCGGG--EEEESCHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHhCCCCCCCCC-----------ChHHHHHHHHHHHHHhcCCCCCHHH--EEEcCCHHHHHHHHHHHhc
Confidence 56777887777664322222221 223 566666654 6 66666 9999999999999999997
Q ss_pred cCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh---hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC-
Q psy16512 146 FNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD---ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP- 219 (815)
Q Consensus 146 ~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~---~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~- 219 (815)
++|| |++..+.|+++.......+... .++.+.++ ..+++.++++++ ..++++|++++++||||.++|
T Consensus 109 -~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~------~~~~~~v~l~~p~nptG~~~~~ 181 (390)
T 1d2f_A 109 -ETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLA------KPECKIMLLCSPQNPTGKVWTC 181 (390)
T ss_dssp -CTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHT------STTEEEEEEESSCTTTCCCCCT
T ss_pred -CCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhc------cCCCeEEEEeCCCCCCCcCcCH
Confidence 8898 8888888877655444332222 45554432 256666665442 236899999999999999999
Q ss_pred --hHHHHHHhhccccccccccCCCCeEEEEecccccCC----CCCCCCCCCC---cEEEEccccccccCCc--ceEEEEe
Q psy16512 220 --LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS----NMLDLKQHQP---DFISISFYKMFGYPTG--LGALIVK 288 (815)
Q Consensus 220 --l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~----~~~dl~~~~~---D~vv~S~~K~~g~p~G--~G~l~~~ 288 (815)
+++|.++|+ ++|+++|+|++++... ...++..+.. |. +.|+||+|| ++| +|+++++
T Consensus 182 ~~l~~l~~~~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~-~~G~r~G~~~~~ 248 (390)
T 1d2f_A 182 DELEIMADLCE-----------RHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFN-IPALTGAYGIIE 248 (390)
T ss_dssp THHHHHHHHHH-----------HTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHT-CGGGCCEEEEEC
T ss_pred HHHHHHHHHHH-----------HcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhc-ccChhheEEEEC
Confidence 556677777 8999999999987632 2233333322 67 999999998 557 6999996
Q ss_pred -cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHH
Q psy16512 289 -QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS-FTNAFELSQYTYFYF 366 (815)
Q Consensus 289 -~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~-~~~~~~l~~~l~~~L 366 (815)
+++.+.+.....+ ....++.+..+..++.++++.....-.. .++..++++++.+.|
T Consensus 249 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 306 (390)
T 1d2f_A 249 NSSSRDAYLSALKG----------------------RDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKM 306 (390)
T ss_dssp SHHHHHHHHHHHHT----------------------TSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhh----------------------hcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544322110 1122467777777777777642222122 277888889999999
Q ss_pred Hh-ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhh-cCCcEeccCccCCchhhhhhcCCCHH
Q psy16512 367 KQ-LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN-LKKIQLRTGCHCNPGSCQRFLGLSDI 444 (815)
Q Consensus 367 ~~-l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~-~~gI~v~~g~~~~~~~~~~~~g~~~~ 444 (815)
++ + |+++++.+.. +.++++.++... ++..++.+.|. ++||.+++|..|.+.
T Consensus 307 ~~~~------~~~~~~~~~~-------~~~~~~~~~~~~---~~~~~l~~~l~~~~gi~v~~g~~f~~~----------- 359 (390)
T 1d2f_A 307 NAAF------PELNWQIPQS-------TYLAWLDLRPLN---IDDNALQKALIEQEKVAIMPGYTYGEE----------- 359 (390)
T ss_dssp HHHC------SSCCCCCCSB-------CSEEEEECGGGC---CCHHHHHHHHHHTTCEECEEGGGGCGG-----------
T ss_pred HhhC------CCCEEecCCc-------cEEEEEEccccC---CCHHHHHHHHHHHcCEEeeCccccCCC-----------
Confidence 87 6 5666554331 344567775420 22345777776 789999988765421
Q ss_pred HHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 445 TIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 445 ~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
..+++|||++. ++++++.+++.|.+++.+
T Consensus 360 ----------------------~~~~~Ris~~~--~~~~l~~~l~~l~~~l~~ 388 (390)
T 1d2f_A 360 ----------------------GRGFVRLNAGC--PRSKLEKGVAGLINAIRA 388 (390)
T ss_dssp ----------------------GTTEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred ----------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 03789999996 588999999999987643
No 97
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.90 E-value=9.1e-23 Score=227.96 Aligned_cols=292 Identities=12% Similarity=0.072 Sum_probs=202.4
Q ss_pred HHHHHHHHHhHc----CCC--C-CceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcC
Q psy16512 107 IDQMRTKILQYF----NTD--S-DHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFS 177 (815)
Q Consensus 107 ~~~~r~~la~~~----g~~--~-~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~ 177 (815)
..++|+.+++++ |++ + ++ |++|+|+++|+.+++.++. ++|| |++....|+++.......+... .++.+
T Consensus 87 ~~~lr~~ia~~~~~~~g~~~~~~~~--v~~t~G~~~al~~~~~~l~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~ 163 (404)
T 2o1b_A 87 KEAFKQAIVDFYQRQYNVTLDKEDE--VCILYGTKNGLVAVPTCVI-NPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLE 163 (404)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCTTTS--EEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCSSHHHHHHHTTCEEEEEECC
T ss_pred CHHHHHHHHHHHHHHhCCCCCCccc--EEEcCCcHHHHHHHHHHhc-CCCCEEEEcCCCchhHHHHHHHCCCEEEEeccC
Confidence 567888888887 865 2 45 9999999999999999997 8898 8888888887765544433222 55665
Q ss_pred chh-hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHH---HHHHhhccccccccccCCCCeEEEEeccccc
Q psy16512 178 VDD-ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSW---CNTVHRNHVFKKHFKCSRSNCFVLLDAATYC 253 (815)
Q Consensus 178 ~~~-~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~---I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~ 253 (815)
.++ ..+++.++++++ +++++|++++++||||.++|.++ |.++|+ ++|+++|+|++++.
T Consensus 164 ~~~~~~d~~~l~~~l~-------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-----------~~~~~li~De~~~~ 225 (404)
T 2o1b_A 164 PPHYLPDWSKVDSQII-------DKTKLIYLTYPNNPTGSTATKEVFDEAIAKFK-----------GTDTKIVHDFAYGA 225 (404)
T ss_dssp TTTCCCCGGGSCHHHH-------HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHT-----------TSSCEEEEECTTTT
T ss_pred cccCcCCHHHHHHhhc-------cCceEEEEcCCCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEEccchh
Confidence 433 256666665442 46899999999999999998655 555565 89999999999876
Q ss_pred CC---CCCCCCCC----CCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCcccc
Q psy16512 254 GS---NMLDLKQH----QPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEK 324 (815)
Q Consensus 254 g~---~~~dl~~~----~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (815)
.. .+.++..+ +.++++.|+||+|| ++| +|++++++++++.+.... .
T Consensus 226 ~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~l~~~~------------------------~ 280 (404)
T 2o1b_A 226 FGFDAKNPSILASENGKDVAIEIYSLSKGYN-MSGFRVGFAVGNKDMIQALKKYQ------------------------T 280 (404)
T ss_dssp CBSSSCCCCGGGSTTHHHHEEEEEESTTTTT-CGGGCCEEEEECHHHHHHHHHHH------------------------H
T ss_pred cccCCCCCChhhcCCCCCCEEEEEecchhcc-CchhheEeEecCHHHHHHHHHHH------------------------h
Confidence 43 22233222 35789999999998 446 799999888776553221 1
Q ss_pred ccCCCCChhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecC
Q psy16512 325 FEDGTVNYLAIISLKYGFDTMEK-KRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHK 403 (815)
Q Consensus 325 ~~~gt~~~~~~~al~~al~~l~~-~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~ 403 (815)
...++.+.....++.++++.... .....++.+++++++.+.|+++ +++++.+.. +.++++.++..
T Consensus 281 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~-------g~~~~~~~~~~ 346 (404)
T 2o1b_A 281 HTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA-------DLPFVHAKG-------GIYVWLETPPG 346 (404)
T ss_dssp HHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-------TCCEECCCB-------SSEEEEECCTT
T ss_pred hccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc-------CCeecCCCc-------ceEEEEeCCCC
Confidence 12235667777777677665221 2112277788889999999876 455554431 44577777521
Q ss_pred CCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHH
Q psy16512 404 DGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWD 482 (815)
Q Consensus 404 ~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~e 482 (815)
++..++.+.| +++||.+++|..|... ..+++|+|++. +++
T Consensus 347 ----~~~~~l~~~l~~~~gi~v~~g~~f~~~---------------------------------~~~~iRis~~~--~~e 387 (404)
T 2o1b_A 347 ----YDSEQFEQFLVQEKSILVAPGKPFGEN---------------------------------GNRYVRISLAL--DDQ 387 (404)
T ss_dssp ----CCHHHHHHHHHHHHCEECEESGGGCGG---------------------------------GTTEEEEECCS--CTT
T ss_pred ----CCHHHHHHHHHHHCCEEEeCchhhCcC---------------------------------CCCeEEEEEcC--CHH
Confidence 2233566665 4789999988765421 03789999996 688
Q ss_pred HHHHHHHHHHHHHhh
Q psy16512 483 DVKYFLSFLNQYFLQ 497 (815)
Q Consensus 483 di~~lv~~L~~~~~~ 497 (815)
+++++++.|.+++.+
T Consensus 388 ~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 388 KLDEAAIRLTELAYL 402 (404)
T ss_dssp HHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887643
No 98
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.90 E-value=2.2e-23 Score=232.35 Aligned_cols=318 Identities=12% Similarity=0.077 Sum_probs=208.3
Q ss_pred cchhhHHHHHHHHhhc----cccCCCChhhhhhhhhhhHHHHHHHHHhHc----C--CCCCceeEEecCCchhhHHHHHh
Q psy16512 73 YSQSQMNQTIEQLKEN----IFSHPHGNSVLSDFCVSEIDQMRTKILQYF----N--TDSDHYSVIFTSGATSAIKTVSE 142 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~----~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~~~iv~t~g~t~al~~~~~ 142 (815)
.++.+.+++.+.+... ....+. ... ..++++.+++++ | +++++ |++|+|+++|+.+++.
T Consensus 49 ~~~~v~~a~~~~~~~~~~~~~~~y~~-----~~g----~~~lr~~la~~l~~~~g~~~~~~~--i~~~~g~~~al~~~~~ 117 (398)
T 3ele_A 49 APQIVNDTIKELVTDYDSVALHGYTS-----AQG----DVETRAAIAEFLNNTHGTHFNADN--LYMTMGAAASLSICFR 117 (398)
T ss_dssp CCHHHHHHHHHHHHHSCHHHHHSCCC-----TTC----CHHHHHHHHHHHHHHHCCCCCGGG--EEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCccccCCcCC-----CCC----cHHHHHHHHHHHHHHhCCCCChHH--EEEccCHHHHHHHHHH
Confidence 4567777776665431 111111 111 355666666654 4 56666 9999999999999999
Q ss_pred hhccCCC-c-EEEecCCCcchhhHHHHhhccc-eEEcCch-hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcccc
Q psy16512 143 YFEFNEG-S-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD-DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKY 218 (815)
Q Consensus 143 al~~~~g-d-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~ 218 (815)
++. ++| | |++..+.|+++....+..+... .++++.+ ..++++.+++++ .+++++|++++++||||.++
T Consensus 118 ~l~-~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l-------~~~~~~v~~~~p~nptG~~~ 189 (398)
T 3ele_A 118 ALT-SDAYDEFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEERI-------NAHTRGVIINSPNNPSGTVY 189 (398)
T ss_dssp HHC-CSTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTC-------CTTEEEEEECSSCTTTCCCC
T ss_pred HHc-CCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHh-------CcCCCEEEEcCCCCCCCCCC
Confidence 997 899 8 8888888877655444332222 4555543 256777766543 46799999999999999999
Q ss_pred ChHHHHHHhhccccccccccCC------CCeEEEEecccccCC-----CCCCCCCCCCcEEEEccccccccCCc--ceEE
Q psy16512 219 PLSWCNTVHRNHVFKKHFKCSR------SNCFVLLDAATYCGS-----NMLDLKQHQPDFISISFYKMFGYPTG--LGAL 285 (815)
Q Consensus 219 ~l~~I~~l~~~~~~~~~~~~~~------~gi~vivD~a~~~g~-----~~~dl~~~~~D~vv~S~~K~~g~p~G--~G~l 285 (815)
|.+++.++++ .|++ +|+++|+|++++... .+......+.++++.|+||+|| ++| +|++
T Consensus 190 ~~~~l~~l~~--------~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~ 260 (398)
T 3ele_A 190 SEETIKKLSD--------LLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLS-LPGERIGYV 260 (398)
T ss_dssp CHHHHHHHHH--------HHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSS-CTTTCCEEE
T ss_pred CHHHHHHHHH--------HHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCC-CccceeEEE
Confidence 9666554433 2226 899999999987522 1222233456789999999998 446 8999
Q ss_pred EEecccccc--cCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy16512 286 IVKQKSAHV--LNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTY 363 (815)
Q Consensus 286 ~~~~~~~~~--l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~ 363 (815)
+++++..+. +...+.. ........+.+.....++..+++ . ....+++.++++++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~a~~~~l~---~-~~~~~~~~~~~~~l~ 317 (398)
T 3ele_A 261 LVPDEVYDKAELYAAVCG-------------------AGRALGYVCAPSLFQKMIVKCQG---A-TGDINAYKENRDLLY 317 (398)
T ss_dssp ECCTTSTTHHHHHHHHHH-------------------HHHHTTCCCSCHHHHHHHTTCTT---C-CCCHHHHHHHHHHHH
T ss_pred EEcchhhhHHHHHHHHHH-------------------HhhhccccCCCHHHHHHHHHHhc---C-HHHHHHHHHHHHHHH
Confidence 998876532 1000000 00011122344444444433332 1 123478888999999
Q ss_pred HHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCH
Q psy16512 364 FYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSD 443 (815)
Q Consensus 364 ~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~ 443 (815)
+.|+++ +++++.+.. +.++++.++..+ ..++.+.|.++||.+++|..|..
T Consensus 318 ~~L~~~-------g~~~~~~~~-------~~~~~~~~~~~~-----~~~~~~~l~~~gi~v~~g~~~~~----------- 367 (398)
T 3ele_A 318 EGLTRI-------GYHCFKPDG-------AFYMFVKALEDD-----SNAFCEKAKEEDVLIVAADGFGC----------- 367 (398)
T ss_dssp HHHHHH-------TCCEECCSB-------SSEEEEECSSSC-----HHHHHHHHHTTTEECEESGGGTC-----------
T ss_pred HHHHHc-------CCeecCCCe-------eEEEEEEcCCCC-----HHHHHHHHHHCCEEEeCccccCC-----------
Confidence 999887 566665432 455777765432 34577888999999998865431
Q ss_pred HHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 444 ITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 444 ~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+++|+|++ ++++++++++++|.+++.+
T Consensus 368 ------------------------~~~iRis~~--~~~e~i~~~l~~l~~~l~~ 395 (398)
T 3ele_A 368 ------------------------PGWVRISYC--VDREMIKHSMPAFEKIYKK 395 (398)
T ss_dssp ------------------------TTEEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------CCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 278999997 6999999999999997753
No 99
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.90 E-value=1.5e-22 Score=223.61 Aligned_cols=291 Identities=11% Similarity=0.126 Sum_probs=207.2
Q ss_pred HHHHHHHHHhHc-CCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhh--
Q psy16512 107 IDQMRTKILQYF-NTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDA-- 181 (815)
Q Consensus 107 ~~~~r~~la~~~-g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~-- 181 (815)
..++++.+++++ ++++++ |++|+|+++|+.+++.++. ++|| |++....|+++.......+... .++++.++.
T Consensus 65 ~~~l~~~la~~~~~~~~~~--v~~~~g~~~a~~~~~~~l~-~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 141 (375)
T 3op7_A 65 SPAFKKSVSQLYTGVKPEQ--ILQTNGATGANLLVLYSLI-EPGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGWL 141 (375)
T ss_dssp CHHHHHHHHTTSSSCCGGG--EEEESHHHHHHHHHHHHHC-CTTCEEEEEESSCTHHHHHHHHTTCEEEEEEEEGGGTTE
T ss_pred hHHHHHHHHHHhccCChhh--EEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCCCC
Confidence 678999999998 567776 9999999999999999997 8999 8888888887765544433222 555554333
Q ss_pred hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC---hHHHHHHhhccccccccccCCCCeEEEEecccccCCCC-
Q psy16512 182 RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM- 257 (815)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~- 257 (815)
++++.+++++ .+++++|++++++||||.++| +++|.++|+ ++|+++|+|++++.....
T Consensus 142 ~d~~~l~~~l-------~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~-----------~~~~~li~De~~~~~~~~~ 203 (375)
T 3op7_A 142 PDLEKLRQLI-------RPTTKMICINNANNPTGAVMDRTYLEELVEIAS-----------EVGAYILSDEVYRSFSELD 203 (375)
T ss_dssp ECHHHHHHHC-------CTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHH-----------TTTCEEEEECCSCCCSSSC
T ss_pred CCHHHHHHhh-------ccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHH-----------HcCCEEEEEcccccccccC
Confidence 5666666543 468999999999999999999 777888888 999999999998754321
Q ss_pred -CC-CCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChh
Q psy16512 258 -LD-LKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYL 333 (815)
Q Consensus 258 -~d-l~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 333 (815)
.. ....+.++++.|++|.+| ++| +|++++++++++.++... .....+.+..
T Consensus 204 ~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~v~~~~~l~~~~~~~~------------------------~~~~~~~~~~ 258 (375)
T 3op7_A 204 VPSIIEVYDKGIAVNSLSKTYS-LPGIRIGWVAANHQVTDILRDYR------------------------DYTMICAGVF 258 (375)
T ss_dssp CCCHHHHCTTEEEEEESSSSSS-CGGGCCEEEECCHHHHHHHTTTG------------------------GGTTSCCCHH
T ss_pred CCchhhhcCCEEEEeEChhhcC-CcccceEEEEeCHHHHHHHHHHH------------------------hhhccCCCcH
Confidence 11 112345688999999998 446 699999888776664322 1122344556
Q ss_pred HHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHH
Q psy16512 334 AIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSE 412 (815)
Q Consensus 334 ~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~ 412 (815)
...++..+++......... ++..++++++.+.|++. +++.+..+.. +.++.+.++.. .+..+
T Consensus 259 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~~~~~-------~~~~~~~~~~~----~~~~~ 321 (375)
T 3op7_A 259 DDLVAQLALAHYQEILERNRHILEENLAILDQWIEEE------PLVSYIRPAV-------VSTSFVKIAVD----MPMED 321 (375)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHC------TTEEECCCSS-------SSCEEEEECCS----SCHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhC------CCceEecCCC-------eEEEeEEcCCC----CCHHH
Confidence 6666666666544332233 66688888899999887 6888776543 44555555432 12234
Q ss_pred HHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHH
Q psy16512 413 VQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFL 491 (815)
Q Consensus 413 v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L 491 (815)
+.+.+ .++||.+++|..|.. .+++|++++. +.+++++++++|
T Consensus 322 ~~~~ll~~~gi~v~~g~~~~~-----------------------------------~~~iRi~~~~--~~~~i~~~l~~l 364 (375)
T 3op7_A 322 FCLQLLQEHGVLLVPGNRFER-----------------------------------DGYVRLGFAC--EQETLIKGLEKL 364 (375)
T ss_dssp HHHHHHHHHCEECEEGGGGTC-----------------------------------TTEEEECCCS--CHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEeChhhhCC-----------------------------------CCeEEEEecC--CHHHHHHHHHHH
Confidence 55555 789999988754321 2789999885 458999999999
Q ss_pred HHHHhh
Q psy16512 492 NQYFLQ 497 (815)
Q Consensus 492 ~~~~~~ 497 (815)
.+++.+
T Consensus 365 ~~~l~~ 370 (375)
T 3op7_A 365 SQFLRR 370 (375)
T ss_dssp HHHHGG
T ss_pred HHHHHH
Confidence 998754
No 100
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.90 E-value=6.2e-23 Score=231.11 Aligned_cols=336 Identities=11% Similarity=0.002 Sum_probs=221.4
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhhc---cccCCCChhhhhhhhhhhHHHHHHHHHhHc----C--CCCC-ceeEEec
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKEN---IFSHPHGNSVLSDFCVSEIDQMRTKILQYF----N--TDSD-HYSVIFT 130 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~~---~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g--~~~~-~~~iv~t 130 (815)
.++|+.+... ..++.+.+++.+.+... ....+. ... ..++++.+++++ | ++++ + |++|
T Consensus 39 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~-----~~g----~~~l~~~la~~l~~~~g~~~~~~~~--v~~~ 107 (429)
T 1yiz_A 39 PLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTR-----GFG----HPRLVQALSKLYSQLVDRTINPMTE--VLVT 107 (429)
T ss_dssp CEECCSSSCSSCCCHHHHHHHHHHHTCSCGGGGSCCC-----SSC----CHHHHHHHHHHHHHHHTSCCCTTTS--EEEE
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHhccccCccCCCC-----CCC----cHHHHHHHHHHHHHHhCCCCCCcCC--EEEe
Confidence 4566665443 35577777777766431 111111 112 456667777665 7 4555 6 9999
Q ss_pred CCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch----------hhhcchhhhhhhhhhhhhc
Q psy16512 131 SGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD----------DARNMLNEFKESQENVENM 198 (815)
Q Consensus 131 ~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~----------~~~~~~~~~~~l~~~~~~~ 198 (815)
+|+++|+.+++.++. ++|| |++....|+++.......+... .++.+.+ ...+++.++++ +
T Consensus 108 ~g~~~a~~~~~~~~~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~-------l 179 (429)
T 1yiz_A 108 VGAYEALYATIQGHV-DEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEAL-------F 179 (429)
T ss_dssp SHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHH-------C
T ss_pred cChHHHHHHHHHHhc-CCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHH-------h
Confidence 999999999999997 8898 8888888887665544332222 5565543 23566666553 3
Q ss_pred CCCccEEEEecccCCCccccC---hHHHHHHhhccccccccccCCCCeEEEEecccccC----CCCCC---CC-CCCCcE
Q psy16512 199 RHSNSLFVYPAESNFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG----SNMLD---LK-QHQPDF 267 (815)
Q Consensus 199 ~~~t~lv~i~~~~n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g----~~~~d---l~-~~~~D~ 267 (815)
.+++++|++++++||||.++| +++|.++|+ ++|+++|+|++++.. ..... +. ..+.|+
T Consensus 180 ~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~ 248 (429)
T 1yiz_A 180 NEKTKMIIINTPHNPLGKVMDRAELEVVANLCK-----------KWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTI 248 (429)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHH-----------HHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEE
T ss_pred ccCceEEEECCCCCCCCccCCHHHHHHHHHHHH-----------HcCcEEEEeccccccccCCCCCcChhhccCCcCceE
Confidence 467899999999999999997 666677777 899999999998742 11112 21 345789
Q ss_pred EEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH-
Q psy16512 268 ISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT- 344 (815)
Q Consensus 268 vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~- 344 (815)
++.|+||+|| ++| +|++++++++++.+.... ....++.+.+...++.++++.
T Consensus 249 ~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~ 303 (429)
T 1yiz_A 249 TIGSAGKTFS-LTGWKIGWAYGPEALLKNLQMVH------------------------QNCVYTCATPIQEAIAVGFETE 303 (429)
T ss_dssp EEEEHHHHHT-CGGGCCEEEESCHHHHHHHHHHH------------------------HTTTCCCCHHHHHHHHHHHHHH
T ss_pred EEecchhccC-CCCcceEEEEeCHHHHHHHHHHH------------------------hhcccCCChHHHHHHHHHHhcc
Confidence 9999999999 668 899999887766553211 122345666777777777765
Q ss_pred ----H--HhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC--------CccC
Q psy16512 345 ----M--EKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG--------TYYG 409 (815)
Q Consensus 345 ----l--~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~--------~~~~ 409 (815)
. ...-... ++.+++++++.+.|+++ +++++.+.. +.++++.++.... ...+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~ 369 (429)
T 1yiz_A 304 LKRLKSPECYFNSISGELMAKRDYMASFLAEV-------GMNPTVPQG-------GYFMVADWSSLDSKVDLTQETDARK 369 (429)
T ss_dssp HTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH-------TCEEEECSB-------SSEEEEECCSSCTTTTCCSSSSSCH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHhC-------CCcccCCCc-------ceEEEEEcccccccccccccccCCC
Confidence 2 1111122 77788888999999876 566654432 5678888764210 0012
Q ss_pred HHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHH
Q psy16512 410 YSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFL 488 (815)
Q Consensus 410 ~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv 488 (815)
..++.+.| .++||.+++|..|...... +...+++|+|++ ++++++++++
T Consensus 370 ~~~l~~~l~~~~gv~v~~g~~f~~~~~~----------------------------~~~~~~iRis~~--~~~e~i~~~l 419 (429)
T 1yiz_A 370 DYRFTKWMTKSVGLQGIPPSAFYSEPNK----------------------------HLGEDFVRYCFF--KKDENLQKAA 419 (429)
T ss_dssp HHHHHHHHHHHTSEECBCGGGGSCGGGG----------------------------GGTTTEEEEECC--SCHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEeCchHhCCCccc----------------------------CCCCCeEEEEec--CCHHHHHHHH
Confidence 33566655 5899999988654321100 001378999998 4899999999
Q ss_pred HHHHHHHh
Q psy16512 489 SFLNQYFL 496 (815)
Q Consensus 489 ~~L~~~~~ 496 (815)
++|++++.
T Consensus 420 ~~l~~~l~ 427 (429)
T 1yiz_A 420 EILRKWKG 427 (429)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhcc
Confidence 99998753
No 101
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.90 E-value=1.4e-23 Score=233.82 Aligned_cols=297 Identities=14% Similarity=0.100 Sum_probs=203.8
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNM 184 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~ 184 (815)
..++|+.+++++|+++++ |++|+|+++|+.+++.++. ++|| |++....|+++.......+... .++.+.++ +++
T Consensus 76 ~~~l~~~la~~~g~~~~~--v~~~~g~~~al~~~~~~~~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~-~d~ 151 (397)
T 2zyj_A 76 YAPLRAFVAEWIGVRPEE--VLITTGSQQALDLVGKVFL-DEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEG-PDL 151 (397)
T ss_dssp CHHHHHHHHHHHTSCGGG--EEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTE-ECH
T ss_pred CHHHHHHHHHHhCCChhh--EEEeccHHHHHHHHHHHhC-CCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCCC-CCH
Confidence 678999999999987776 9999999999999999997 8898 8888878777654433322111 45554433 666
Q ss_pred hhhhhhhhhhhhhcCCCccEE-EEecccCCCccccChH---HHHHHhhccccccccccCCCCeEEEEecccccCC----C
Q psy16512 185 LNEFKESQENVENMRHSNSLF-VYPAESNFSGTKYPLS---WCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS----N 256 (815)
Q Consensus 185 ~~~~~~l~~~~~~~~~~t~lv-~i~~~~n~tG~~~~l~---~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~----~ 256 (815)
+.++++++ ..++++| ++++++||||.++|.+ +|.++|+ ++|+++|+|++++... .
T Consensus 152 ~~l~~~l~------~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~-----------~~~~~li~De~~~~~~~~g~~ 214 (397)
T 2zyj_A 152 DALEEVLK------RERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVM-----------ERGLVVVEDDAYRELYFGEAR 214 (397)
T ss_dssp HHHHHHHH------HCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHH-----------HHTCCEEEECTTTTCBCSSCC
T ss_pred HHHHHHHh------hcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHH-----------HcCCEEEEeCCcccccCCCCC
Confidence 66666443 1257887 5799999999999977 5666666 8999999999988643 2
Q ss_pred CCCCCCCC------CcEEEEccccccccCC-cceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCC
Q psy16512 257 MLDLKQHQ------PDFISISFYKMFGYPT-GLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT 329 (815)
Q Consensus 257 ~~dl~~~~------~D~vv~S~~K~~g~p~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 329 (815)
+.++..++ ..+++.|+||+|+ |. ++|++++++++++.+..... .+..++
T Consensus 215 ~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~l~~~~~-----------------------~~~~~~ 270 (397)
T 2zyj_A 215 LPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFAVAHPEALQKLVQAKQ-----------------------GADLHT 270 (397)
T ss_dssp CCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEEECCHHHHHHHHHHHH-----------------------HHHSSC
T ss_pred CCchhhhCcccCCCeEEEEeccccccc-ccceeEEEecCHHHHHHHHHHHH-----------------------hhcCCC
Confidence 23332232 3388899999999 62 37999999877665532210 111223
Q ss_pred CChhHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHhccccCCCC-cEEEcCCCCCCCCCcccceEEEEEecCCCC
Q psy16512 330 VNYLAIISLKYGFDTME--KKRKSFTNAFELSQYTYFYFKQLSYSNGQP-LVELYHDTDYGESKYQGNIVNFNLLHKDGT 406 (815)
Q Consensus 330 ~~~~~~~al~~al~~l~--~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p-~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~ 406 (815)
+..+..++.++++... ......++..++++++.+.|++.. | ++++..+.. +.++++.++..
T Consensus 271 -~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-----~~g~~~~~~~~-------g~~~~~~~~~~--- 334 (397)
T 2zyj_A 271 -PMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREV-----PKEVRYTRPKG-------GMFVWMELPKG--- 334 (397)
T ss_dssp -CHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CTTSEECCCSB-------SSEEEEECSTT---
T ss_pred -CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCeEEccCCc-------cEEEEEEcCCC---
Confidence 5566666656654321 111112677788888888887631 4 467665432 67778877531
Q ss_pred ccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHH
Q psy16512 407 YYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKY 486 (815)
Q Consensus 407 ~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~ 486 (815)
.+..++.+.|.++||.+++|..|.... ...+++|+|++.. +++++++
T Consensus 335 -~~~~~~~~~l~~~gi~v~~g~~f~~~~-------------------------------~~~~~iRis~~~~-~~~~i~~ 381 (397)
T 2zyj_A 335 -LSAEGLFRRALEENVAFVPGGPFFANG-------------------------------GGENTLRLSYATL-DREGIAE 381 (397)
T ss_dssp -CCHHHHHHHHHHTTEEEEESGGGCTTS-------------------------------CCTTEEEEECSSS-CHHHHHH
T ss_pred -CCHHHHHHHHHHCCCEEechHHhcCCC-------------------------------CCCCeEEEEcCCC-CHHHHHH
Confidence 233457888888899999886543210 1137899999976 8999999
Q ss_pred HHHHHHHHHhh
Q psy16512 487 FLSFLNQYFLQ 497 (815)
Q Consensus 487 lv~~L~~~~~~ 497 (815)
++++|.+++.+
T Consensus 382 ~~~~l~~~l~~ 392 (397)
T 2zyj_A 382 GVRRLGRALKG 392 (397)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987743
No 102
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.90 E-value=2.3e-23 Score=233.97 Aligned_cols=325 Identities=10% Similarity=0.043 Sum_probs=214.7
Q ss_pred cchhhHHHHHHHHhhcc--ccCCCChhhhhhhhhhhHHHHHHHHHhHcC------CCC-CceeEEecCCchhhHHHHHhh
Q psy16512 73 YSQSQMNQTIEQLKENI--FSHPHGNSVLSDFCVSEIDQMRTKILQYFN------TDS-DHYSVIFTSGATSAIKTVSEY 143 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~--~~np~s~~~~~~~~~~~~~~~r~~la~~~g------~~~-~~~~iv~t~g~t~al~~~~~a 143 (815)
+++.+.+++.+.+.... ...+. ... ..++|+.++++++ +++ ++ |++|+|+++|+.+++.+
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~y~~-----~~g----~~~lr~~la~~~~~~~g~~~~~~~~--i~~~~g~~~a~~~~~~~ 110 (422)
T 3fvs_A 42 PPDFAVEAFQHAVSGDFMLNQYTK-----TFG----YPPLTKILASFFGELLGQEIDPLRN--VLVTVGGYGALFTAFQA 110 (422)
T ss_dssp CCHHHHHHHHHHHHSCGGGGSCCC-----TTC----CHHHHHHHHHHHHHHHTCCCCHHHH--EEEESHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCccCCCCC-----CCC----CHHHHHHHHHHHHHhhCCCCCCCCc--EEEECChHHHHHHHHHH
Confidence 56777777777665321 11111 111 4556666666654 444 45 99999999999999999
Q ss_pred hccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc----h--------hhhcchhhhhhhhhhhhhcCCCccEEEEec
Q psy16512 144 FEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV----D--------DARNMLNEFKESQENVENMRHSNSLFVYPA 209 (815)
Q Consensus 144 l~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~----~--------~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~ 209 (815)
+. ++|| |++....|+++.......+... .++++. + ..++++.++++ +.+++++|++++
T Consensus 111 ~~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~-------~~~~~~~v~~~~ 182 (422)
T 3fvs_A 111 LV-DEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGK-------FTSRTKALVLNT 182 (422)
T ss_dssp HC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTT-------CCTTEEEEEEES
T ss_pred Hc-CCCCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhh-------cCCCceEEEECC
Confidence 97 8999 8888888887665554443322 556654 1 13455555553 346799999999
Q ss_pred ccCCCccccC---hHHHHHHhhccccccccccCCCCeEEEEeccccc----CCCCCCCCCC----CCcEEEEcccccccc
Q psy16512 210 ESNFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC----GSNMLDLKQH----QPDFISISFYKMFGY 278 (815)
Q Consensus 210 ~~n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~----g~~~~dl~~~----~~D~vv~S~~K~~g~ 278 (815)
++||||.++| +++|.++|+ ++|+++|+|++++. +..+.++..+ +.++++.|+||.||
T Consensus 183 p~nptG~~~~~~~l~~i~~~~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g- 250 (422)
T 3fvs_A 183 PNNPLGKVFSREELELVASLCQ-----------QHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFS- 250 (422)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHH-----------HHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHT-
T ss_pred CCCCCCcCCCHHHHHHHHHHHH-----------HcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccC-
Confidence 9999999996 555666676 89999999999875 2222233222 34588999999998
Q ss_pred CCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH-------Hhhh
Q psy16512 279 PTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM-------EKKR 349 (815)
Q Consensus 279 p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l-------~~~~ 349 (815)
++| +|++++++++++.+.... ....++.+.....++.++++.. ....
T Consensus 251 ~~G~r~G~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 306 (422)
T 3fvs_A 251 ATGWKVGWVLGPDHIMKHLRTVH------------------------QNSVFHCPTQSQAAVAESFEREQLLFRQPSSYF 306 (422)
T ss_dssp CGGGCCEEEECCHHHHHHHHHHH------------------------HTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHH
T ss_pred CccceEEEEEeCHHHHHHHHHHH------------------------hhccCCCCcHHHHHHHHHHhhccccccchHHHH
Confidence 556 899999887765542211 1123356667777777777641 1111
Q ss_pred hhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC---C------CccCHHHHHH-hhh
Q psy16512 350 KSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD---G------TYYGYSEVQN-LAN 418 (815)
Q Consensus 350 ~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~---~------~~~~~~~v~~-~l~ 418 (815)
... ++..++++++.+.|+++ +++++.+.. +.++++.+.... . ......++.+ ++.
T Consensus 307 ~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 372 (422)
T 3fvs_A 307 VQFPQAMQRCRDHMIRSLQSV-------GLKPIIPQG-------SYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIK 372 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-------TCEEEBCSB-------SSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHc-------CCeecCCCe-------eeEEEEechhhcccccccccccccccHHHHHHHHHH
Confidence 122 78888899999999886 677665543 667777665310 0 0000123444 467
Q ss_pred cCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 419 LKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 419 ~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
++||.+.+|..|...... ....+++|+|++. +++++++++++|++++.
T Consensus 373 ~~gv~v~~g~~f~~~~~~----------------------------~~~~~~iRis~~~--~~e~i~~~l~~l~~~l~ 420 (422)
T 3fvs_A 373 NKGLVAIPVSIFYSVPHQ----------------------------KHFDHYIRFCFVK--DEATLQAMDEKLRKWKV 420 (422)
T ss_dssp HHCEECEEGGGGSCHHHH----------------------------TTSCSEEEEECCC--CHHHHHHHHHHHHHHHH
T ss_pred hcCEEEeCcHHhcCCcCC----------------------------CCCCCeEEEEecC--CHHHHHHHHHHHHHHHh
Confidence 789999999876543211 0114899999986 99999999999998764
No 103
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.90 E-value=1.6e-22 Score=225.64 Aligned_cols=340 Identities=12% Similarity=0.020 Sum_probs=211.9
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhH--cC-CCCCceeEEecCCchhhH
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQY--FN-TDSDHYSVIFTSGATSAI 137 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~--~g-~~~~~~~iv~t~g~t~al 137 (815)
.++|+.+... ..++.+.+++.+.+...........+..... ..++|+.++++ +| +++++ |++|+|+++++
T Consensus 35 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g----~~~lr~~la~~l~~g~~~~~~--v~~~~G~~~al 108 (400)
T 3asa_A 35 VINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFG----LPALRQKLSEDFYRGFVDAKE--IFISDGAKVDL 108 (400)
T ss_dssp CEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTC----CHHHHHHHHHTTSTTSSCGGG--EEEESCHHHHH
T ss_pred eEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCC----CHHHHHHHHHHHHcCCCCHHH--EEEccChHHHH
Confidence 3555555443 4566777777666543210000001111223 67899999999 57 66766 99999999999
Q ss_pred HHHHhhhccCCCc-EEEecCCCcchhhHHHHhhcc-c-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCC
Q psy16512 138 KTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTN-Q-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFS 214 (815)
Q Consensus 138 ~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~-g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t 214 (815)
.+++..+ .+|| |++..+.|+++.......+.. . .++.+.++.+..+ +++ .+++++|++++++|||
T Consensus 109 ~~~~~~~--~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-l~~---------~~~~~~v~l~~p~npt 176 (400)
T 3asa_A 109 FRLLSFF--GPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPE-FPE---------DTHIDILCLCSPNNPT 176 (400)
T ss_dssp HHHHHHH--CSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCC-CCT---------TCCCSEEEEESSCTTT
T ss_pred HHHHHHc--CCCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCcccC-hhh---------ccCccEEEEeCCCCCC
Confidence 9876543 7888 888888888776555554444 3 5566544333322 211 1468999999999999
Q ss_pred ccccChHHHHHHhhccccccccccCCCCeEEEEecccc-c---CCCCCCCCCCC----CcEEEEccccccccCCc--ceE
Q psy16512 215 GTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-C---GSNMLDLKQHQ----PDFISISFYKMFGYPTG--LGA 284 (815)
Q Consensus 215 G~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~---g~~~~dl~~~~----~D~vv~S~~K~~g~p~G--~G~ 284 (815)
|.++|.+++.++++ .|+++|+++|+|++++ + +..+.++..++ .++++.|++|+|| ++| +|+
T Consensus 177 G~~~~~~~l~~l~~--------~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~GlriG~ 247 (400)
T 3asa_A 177 GTVLNKDQLRAIVH--------YAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLG-FAGIRLGW 247 (400)
T ss_dssp CCCCCHHHHHHHHH--------HHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGT-TTTCCCEE
T ss_pred CCcCCHHHHHHHHH--------HHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcC-CcchheeE
Confidence 99999766444433 2228999999999987 3 22223333332 3588999999998 567 799
Q ss_pred EEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy16512 285 LIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYF 364 (815)
Q Consensus 285 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~ 364 (815)
+++++++.+... ... .... ........++.+.++..++..+++.. ......++++++++++.+
T Consensus 248 ~~~~~~~~~~~~-----~~~-------~~~~----~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~l~~ 310 (400)
T 3asa_A 248 TVIPQELTYADG-----HFV-------IQDW----ERFLSTTFNGASIPAQEAGVAGLSIL-PQLEAIHYYRENSDLLRK 310 (400)
T ss_dssp EECCTTCBCTTS-----CBH-------HHHH----HHHHHHHCCCCCHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHH
T ss_pred EeeChhhccchh-----hhH-------HHHH----HHHhccCccCCChHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHH
Confidence 999887732110 000 0000 00011123466777777776666543 221223788889999999
Q ss_pred HHHhccccCCCCcEEEcCCCCCCCCCcccceEEEE-Eec-CCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCC
Q psy16512 365 YFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFN-LLH-KDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGL 441 (815)
Q Consensus 365 ~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~-~~~-~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~ 441 (815)
.|+++ +++++.+.. ++++++. ++. .+... +.+.| +++||.+++|..|.+..
T Consensus 311 ~L~~~-------g~~~~~~~~-------~~~~~~~~~~~~~~~~~-----~~~~l~~~~gv~v~~g~~f~~~~------- 364 (400)
T 3asa_A 311 ALLAT-------GFEVFGGEH-------APYLWVKPTQANISDRD-----LFDFFLREYHIAITPGIGFGRSG------- 364 (400)
T ss_dssp HHHHT-------TCEEEECSS-------SSEEEEECCCTTCCTTT-----HHHHHHHHHSEECEEGGGGCGGG-------
T ss_pred HHHHC-------CCeeeCCCC-------ceEEEEeccCCCCCHHH-----HHHHHHHhCCEEEeChhHhCCCC-------
Confidence 99886 566664432 6778887 653 22222 44444 56799999887654210
Q ss_pred CHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhcC
Q psy16512 442 SDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQA 499 (815)
Q Consensus 442 ~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~~ 499 (815)
.+++|+|+ +++++++++++++|++++..-+
T Consensus 365 --------------------------~~~iRis~--~~~~e~i~~~l~~l~~~~~~~~ 394 (400)
T 3asa_A 365 --------------------------SGFVRFSS--LGKREDILAACERLQMAPALQS 394 (400)
T ss_dssp --------------------------TTCEEEEC--CSCHHHHHHHHHHHHC------
T ss_pred --------------------------CCEEEEEe--eCCHHHHHHHHHHHHHHHHhhh
Confidence 27899994 5799999999999998775443
No 104
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.90 E-value=1e-22 Score=229.61 Aligned_cols=328 Identities=12% Similarity=0.075 Sum_probs=215.5
Q ss_pred hhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc----CCCCCceeEEecCCchhhH
Q psy16512 63 CYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF----NTDSDHYSVIFTSGATSAI 137 (815)
Q Consensus 63 iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g~~~~~~~iv~t~g~t~al 137 (815)
+.|..+... ..++.+.+++.+.+......+....+..... ..++++.+++++ ++++++ |++|+|+++++
T Consensus 59 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g----~~~l~~~ia~~~~~~~~~~~~~--i~~t~G~~~al 132 (432)
T 3ei9_A 59 ISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQG----AKPLRAAIAKTFYGGLGIGDDD--VFVSDGAKCDI 132 (432)
T ss_dssp EECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTC----CHHHHHHHHHHHHTTTTCCGGG--EEEESCHHHHH
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCC----CHHHHHHHHHHHHccCCCCcce--EEECCChHHHH
Confidence 445444333 4567788888776653211111111222223 678888888886 777776 99999999999
Q ss_pred HHHHhhhccCCCc-EEEecCCCcchhhHHHHhhcc------------c-eEEcCchhhhcchhhhhhhhhhhhhcCCCcc
Q psy16512 138 KTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTN------------Q-IYSFSVDDARNMLNEFKESQENVENMRHSNS 203 (815)
Q Consensus 138 ~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~------------g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~ 203 (815)
.++ .++. ++|| |++..++|+++......++.. . .++++.++.+..+ +++ .++++
T Consensus 133 ~~l-~~l~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~---------~~~~~ 200 (432)
T 3ei9_A 133 SRL-QVMF-GSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPD-LST---------VGRTD 200 (432)
T ss_dssp HHH-HHHH-CTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCC-GGG---------CCCCS
T ss_pred HHH-HHHc-CCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCC-hhh---------CCCCC
Confidence 875 6666 8998 999999999988777766642 2 5555544322222 211 25689
Q ss_pred EEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC---CCCCCCC----CCCcEEEEcccccc
Q psy16512 204 LFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS---NMLDLKQ----HQPDFISISFYKMF 276 (815)
Q Consensus 204 lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~---~~~dl~~----~~~D~vv~S~~K~~ 276 (815)
+|++++++||||.++|.+++.++++ .|+++|+++|+|++|+... .+..+.. .+.++++.|+||+|
T Consensus 201 ~v~l~~p~NPtG~~~~~~~l~~l~~--------la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 272 (432)
T 3ei9_A 201 IIFFCSPNNPTGAAATREQLTQLVE--------FAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYA 272 (432)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHH--------HHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHH
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHH--------HHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhcc
Confidence 9999999999999999777666644 2338999999999988432 2222221 23568999999999
Q ss_pred ccCCc--ceEEEEecccc--------cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH--
Q psy16512 277 GYPTG--LGALIVKQKSA--------HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT-- 344 (815)
Q Consensus 277 g~p~G--~G~l~~~~~~~--------~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~-- 344 (815)
| ++| +|+++++++.+ +.+... .....++.+.++..++.+++..
T Consensus 273 g-~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~a~~~~l~~~~ 327 (432)
T 3ei9_A 273 G-FTGVRLGWTVIPKKLLYSDGFPVAKDFNRI------------------------ICTCFNGASNISQAGALACLTPEG 327 (432)
T ss_dssp C-TTTTCCEEEECCTTCBCTTSCBHHHHHHHH------------------------HHHSCCCSCHHHHHHHHHHSSHHH
T ss_pred C-CcccceEEEEEChHHhhcchHHHHHHHHHH------------------------hccccCCCCHHHHHHHHHHHhccc
Confidence 9 557 79999988773 211110 0122345666767666666532
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHh-hhcCCcE
Q psy16512 345 MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNL-ANLKKIQ 423 (815)
Q Consensus 345 l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~-l~~~gI~ 423 (815)
........+++.++++++.+.|+++ +++++.+.. +.++++.+++.+ ..++.+. ++++||.
T Consensus 328 ~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~-------~~~~~~~~~~~~-----~~~~~~~ll~~~gv~ 388 (432)
T 3ei9_A 328 LEAMHKVIGFYKENTNIIIDTFTSL-------GYDVYGGKN-------APYVWVHFPNQS-----SWDVFAEILEKTHVV 388 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-------TCCEEECSS-------SSEEEEECTTSC-----HHHHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-------CceecCCCc-------ceEEEEECCCCC-----HHHHHHHHHHHCCEE
Confidence 1112122378888999999999886 566664432 677888776322 2234444 5667999
Q ss_pred eccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 424 LRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 424 v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
+++|..|.+.. .+++|||+. +++++++++++.|++..
T Consensus 389 v~~g~~f~~~~---------------------------------~~~iRis~~--~~~e~l~~~l~rl~~~~ 425 (432)
T 3ei9_A 389 TTPGSGFGPGG---------------------------------EGFVRVSAF--GHRENILEACRRFKQLY 425 (432)
T ss_dssp CEEGGGGCGGG---------------------------------TTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred EeCchHhCCCC---------------------------------CCEEEEEec--CCHHHHHHHHHHHHHHh
Confidence 99987665321 378999974 59999999999998754
No 105
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.90 E-value=3.9e-23 Score=226.38 Aligned_cols=324 Identities=13% Similarity=0.037 Sum_probs=218.6
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVS 141 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~ 141 (815)
.+||+++..+..++.+.+++.+.+.. +.. . ...... .+++++++++++|+++++ |++|+|+++|+.+++
T Consensus 15 ~i~l~~~~~~~~~~~v~~a~~~~~~~--~~~-~--~g~~~~----~~~~~~~l~~~~g~~~~~--v~~~~g~t~a~~~~~ 83 (359)
T 1svv_A 15 PYSFVNDYSVGMHPKILDLMARDNMT--QHA-G--YGQDSH----CAKAARLIGELLERPDAD--VHFISGGTQTNLIAC 83 (359)
T ss_dssp CEECSCSCSSCCCHHHHHHHHHHTTC--CCC-S--TTCSHH----HHHHHHHHHHHHTCTTSE--EEEESCHHHHHHHHH
T ss_pred eEEecCCCcCCCCHHHHHHHHHHHhh--ccc-c--ccccHH----HHHHHHHHHHHhCCCCcc--EEEeCCchHHHHHHH
Confidence 57888887778888888888776542 111 1 122334 788999999999988776 999999999999999
Q ss_pred hhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcc
Q psy16512 142 EYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGT 216 (815)
Q Consensus 142 ~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~ 216 (815)
.++. ++|| |+++...|+++... ..+...| .++.+ +..++++.++++++........++++|+++++ ||||.
T Consensus 84 ~~~~-~~gd~vl~~~~~~~~~~~~-~~~~~~g~~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~ 159 (359)
T 1svv_A 84 SLAL-RPWEAVIATQLGHISTHET-GAIEATGHKVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGT 159 (359)
T ss_dssp HHHC-CTTEEEEEETTSHHHHSST-THHHHTTCCEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSC
T ss_pred HHHh-CCCCEEEEcccchHHHHHH-HHHhcCCCeeEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCce
Confidence 9997 8898 88999899887653 1123334 44443 34566777776553100001124899999998 79999
Q ss_pred ccC---hHHHHHHhhccccccccccCCCCeEEEEeccc---ccCCCCCCCCC----CCCcEEEEccccccccCCcceEEE
Q psy16512 217 KYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAAT---YCGSNMLDLKQ----HQPDFISISFYKMFGYPTGLGALI 286 (815)
Q Consensus 217 ~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~---~~g~~~~dl~~----~~~D~vv~S~~K~~g~p~G~G~l~ 286 (815)
++| +++|.++|+ ++|+++|+|+++ +.+..+.+... ..+|+++.|+||+++ |.|+|+++
T Consensus 160 ~~~~~~l~~i~~~~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~-~~~~g~l~ 227 (359)
T 1svv_A 160 QYTKQELEDISASCK-----------EHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGG-MFGEALII 227 (359)
T ss_dssp CCCHHHHHHHHHHHH-----------HHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTC-SSCEEEEE
T ss_pred ecCHHHHHHHHHHHH-----------HhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCCC-CCceEEEE
Confidence 999 667788887 899999999998 55655444332 357999999999855 88899999
Q ss_pred EecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh-hhH-HHHHHHHHHHHH
Q psy16512 287 VKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-KSF-TNAFELSQYTYF 364 (815)
Q Consensus 287 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-~~~-~~~~~l~~~l~~ 364 (815)
+++++++.+.+....++. .+ +.+.....++... +...+ ... ++..++++++.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~-------------------~~---~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~l~~ 282 (359)
T 1svv_A 228 LNDALKPNARHLIKQRGA-------------------LM---AKGWLLGIQFEVL---MKDNLFFELGAHSNKMAAILKA 282 (359)
T ss_dssp CSGGGCTTHHHHHHHTTC-------------------CC---TTTHHHHHHHHHH---TSTTHHHHHHHHHHHHHHHHHH
T ss_pred EcccHHHHHHHHHhcCCc-------------------cc---ccchhhHHHHHHH---HhhhhHHHHHHHHHHHHHHHHH
Confidence 998877655432111111 00 0111222222222 22211 122 788899999999
Q ss_pred HHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC-CcEeccCccCCchhhhhhcCCCH
Q psy16512 365 YFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK-KIQLRTGCHCNPGSCQRFLGLSD 443 (815)
Q Consensus 365 ~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~-gI~v~~g~~~~~~~~~~~~g~~~ 443 (815)
.| +. ++++++.+.. ++++++.++. ++.+.|.++ ||.+. +.. +
T Consensus 283 ~L-~~------~~~~~~~~~~-------~~~~~~~~~~---------~~~~~l~~~~gi~v~-~~~---~---------- 325 (359)
T 1svv_A 283 GL-EA------CGIRLAWPSA-------SNQLFPILEN---------TMIAELNNDFDMYTV-EPL---K---------- 325 (359)
T ss_dssp HH-HH------TTCCBSSCCS-------SSEECBEEEH---------HHHHHHTTTEECEEE-EEE---T----------
T ss_pred Hh-cc------CCeEEccCCc-------cceEEEEcCH---------HHHHHHHHhcCEEEE-ecc---c----------
Confidence 99 55 5677765543 5666665541 366777666 99982 100 0
Q ss_pred HHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 444 ITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 444 ~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
...+++|+++++.++++|+++++++|++++.
T Consensus 326 ----------------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 356 (359)
T 1svv_A 326 ----------------------DGTCIMRLCTSWATEEKECHRFVEVLKRLVA 356 (359)
T ss_dssp ----------------------TTEEEEEEECCTTCCHHHHHHHHHHHHHC--
T ss_pred ----------------------CCCceEEEEccCcCCHHHHHHHHHHHHHHHh
Confidence 0137899999999999999999999998654
No 106
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.90 E-value=3.7e-23 Score=231.36 Aligned_cols=334 Identities=10% Similarity=-0.013 Sum_probs=217.1
Q ss_pred hhhhhhhhccc-ccchhhHHHHHHHHhhc-cccCCCChhhhhhhhhhhHHHHHHHHHhHcC------CCC-CceeEEecC
Q psy16512 61 DICYLDYTGAG-VYSQSQMNQTIEQLKEN-IFSHPHGNSVLSDFCVSEIDQMRTKILQYFN------TDS-DHYSVIFTS 131 (815)
Q Consensus 61 ~~iyLd~a~~~-~~p~~v~~al~~~l~~~-~~~np~s~~~~~~~~~~~~~~~r~~la~~~g------~~~-~~~~iv~t~ 131 (815)
+.++|..+... +.++.+.+++.+.+... ....+. ... ..++|+.++++++ +++ ++ |++|+
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-----~~g----~~~l~~~la~~~~~~~~~~~~~~~~--i~~~~ 92 (410)
T 3e2y_A 24 SVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTR-----GFG----HPALVKALSCLYGKIYQRQIDPNEE--ILVAV 92 (410)
T ss_dssp TSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCC-----TTC----CHHHHHHHHHHHHHHHTSCCCTTTS--EEEES
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHhCccccCCCC-----CCC----hHHHHHHHHHHHHHHhCCCCCCCCC--EEEeC
Confidence 34566655544 35677777777766432 111111 112 4567777777766 555 55 99999
Q ss_pred CchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc-----------hhhhcchhhhhhhhhhhhhc
Q psy16512 132 GATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV-----------DDARNMLNEFKESQENVENM 198 (815)
Q Consensus 132 g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~-----------~~~~~~~~~~~~l~~~~~~~ 198 (815)
|+++|+.+++.++. ++|| |++....|+++.......+... .++++. +..++++.++++ +
T Consensus 93 g~~~a~~~~~~~~~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~-------~ 164 (410)
T 3e2y_A 93 GAYGSLFNSIQGLV-DPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESK-------F 164 (410)
T ss_dssp HHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTT-------C
T ss_pred CcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhh-------c
Confidence 99999999999997 8999 8888888877765554443322 455542 223456666553 3
Q ss_pred CCCccEEEEecccCCCccccCh---HHHHHHhhccccccccccCCCCeEEEEecccccC----CCCCCCCCC----CCcE
Q psy16512 199 RHSNSLFVYPAESNFSGTKYPL---SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG----SNMLDLKQH----QPDF 267 (815)
Q Consensus 199 ~~~t~lv~i~~~~n~tG~~~~l---~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g----~~~~dl~~~----~~D~ 267 (815)
.+++++|++++++||||.+++. ++|.++|+ ++|+++|+|++++.. ..+.++..+ +.++
T Consensus 165 ~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i 233 (410)
T 3e2y_A 165 SSKTKAIILNTPHNPLGKVYTRQELQVIADLCV-----------KHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTI 233 (410)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHH-----------HHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEE
T ss_pred CCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHH-----------HcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEE
Confidence 4679999999999999999864 45566666 899999999998642 222222222 3458
Q ss_pred EEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH
Q psy16512 268 ISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM 345 (815)
Q Consensus 268 vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l 345 (815)
++.|++|.|| ++| +|++++++++++.+.... .....+.+.....++..+++..
T Consensus 234 ~~~S~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~ 288 (410)
T 3e2y_A 234 TIGSAGKTFS-VTGWKLGWSIGPAHLIKHLQTVQ------------------------QNSFYTCATPLQAALAEAFWID 288 (410)
T ss_dssp EEEEHHHHSS-CGGGCCEEEECCHHHHHHHHHHH------------------------HTTTCCCCHHHHHHHHHHHHHH
T ss_pred EEecchhhcC-CCCceEEEEEECHHHHHHHHHHH------------------------HhhccCCChHHHHHHHHHHHhh
Confidence 8899999998 556 899999888766553211 1123355667777776766531
Q ss_pred -------HhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCc-------cC-
Q psy16512 346 -------EKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTY-------YG- 409 (815)
Q Consensus 346 -------~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~-------~~- 409 (815)
......+ ++.+++++++.+.|+++ ++++..+.. +.++++.+....... .+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (410)
T 3e2y_A 289 IKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-------GLKPIVPDG-------GYFIIADVSSLGADLSDMNSDEPYD 354 (410)
T ss_dssp HTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-------TCEEEBCSB-------SSEEEEECGGGCCCCTTCCSSCCHH
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHC-------CCeecCCCc-------cEEEEEEchhhhcccccccccccCH
Confidence 1111122 77788889999999886 567665543 667777765422100 00
Q ss_pred HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHH
Q psy16512 410 YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLS 489 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~ 489 (815)
...+.+++.++||.+.+|..|....... ...+++|+|++. ++++++++++
T Consensus 355 ~~~~~~ll~~~gv~v~~g~~f~~~~~~~----------------------------~~~~~iRis~~~--~~e~l~~~l~ 404 (410)
T 3e2y_A 355 YKFVKWMTKHKKLTAIPVSAFCDSKSKP----------------------------HFEKLVRFCFIK--KDSTLDAAEE 404 (410)
T ss_dssp HHHHHHHHHHHSEECEEGGGGSCTTTHH----------------------------HHTTEEEEECCC--CHHHHHHHHH
T ss_pred HHHHHHHHHHcCEEEeCchhhCCCCCCC----------------------------CCCCEEEEEEcC--CHHHHHHHHH
Confidence 1224445678899999987764321100 013899999885 9999999999
Q ss_pred HHHH
Q psy16512 490 FLNQ 493 (815)
Q Consensus 490 ~L~~ 493 (815)
+|++
T Consensus 405 ~l~~ 408 (410)
T 3e2y_A 405 IFRA 408 (410)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9875
No 107
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.90 E-value=3.1e-23 Score=230.63 Aligned_cols=307 Identities=11% Similarity=0.030 Sum_probs=200.5
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHH-HHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMR-ELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~-~~~~~~g--~v~~~~~~~~ 182 (815)
++++|+++++++|++ + .+++++ +++|+++++. +. ++|| ||++..+|++.+.+. ..++..| ...++.+
T Consensus 57 ~~~lr~~la~~~g~~-~--~i~~~s-Gt~a~~~al~-~~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~--- 127 (393)
T 1n8p_A 57 RENLERAVAALENAQ-Y--GLAFSS-GSATTATILQ-SL-PQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDL--- 127 (393)
T ss_dssp HHHHHHHHHHHTTCS-E--EEEESC-HHHHHHHHHH-TS-CSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSH---
T ss_pred HHHHHHHHHHHhCCC-c--EEEECC-hHHHHHHHHH-Hc-CCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCC---
Confidence 889999999999986 2 255555 5899999999 76 8898 888888888765543 3455556 4444433
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCC----CeEEEEecccccCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRS----NCFVLLDAATYCGSNML 258 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~----gi~vivD~a~~~g~~~~ 258 (815)
+ +.+++ .++++|++|++++++||||.++|+++|.++|+ ++ |+++|+|++++.+...
T Consensus 128 d-~~l~~-------~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~-----------~~~~~~~~~livD~a~~~~~~~- 187 (393)
T 1n8p_A 128 L-NDLPQ-------LIKENTKLVWIETPTNPTLKVTDIQKVADLIK-----------KHAAGQDVILVVDNTFLSPYIS- 187 (393)
T ss_dssp H-HHHHH-------HSCSSEEEEEECSSCTTTCCCCCHHHHHHHHH-----------HHTTTTTCEEEEECTTTHHHHC-
T ss_pred h-HHHHH-------hcccCceEEEEECCCCCcceecCHHHHHHHHH-----------HhCCCCCCEEEEeCCccccccC-
Confidence 3 44444 33467999999999999999999999999999 78 9999999999877542
Q ss_pred CCCCCCCcEEEEccccccccCCc--c-eEEEEe-cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhH
Q psy16512 259 DLKQHQPDFISISFYKMFGYPTG--L-GALIVK-QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLA 334 (815)
Q Consensus 259 dl~~~~~D~vv~S~~K~~g~p~G--~-G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 334 (815)
+...+++|+++.|+||++| |+| + |+++++ +++++.+.+.. ....++.+...
T Consensus 188 ~~~~~~~di~~~S~sK~~g-~~G~rigG~~~~~~~~~~~~l~~~~------------------------~~~g~~~~~~~ 242 (393)
T 1n8p_A 188 NPLNFGADIVVHSATKYIN-GHSDVVLGVLATNNKPLYERLQFLQ------------------------NAIGAIPSPFD 242 (393)
T ss_dssp CGGGGTCSEEEEETTTTTT-CSSCCCCEEEEESCHHHHHHHHHHH------------------------HHHCCCCCHHH
T ss_pred CHHHcCCeEEEEECccccc-CCCCceeEEEEeCCHHHHHHHHHHH------------------------HhcCCCCCHHH
Confidence 3344579999999999999 767 6 888885 55655443211 01122334444
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCc-EE-EcCCCCCCCC---------Cc-c-cceEEEEEe
Q psy16512 335 IISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPL-VE-LYHDTDYGES---------KY-Q-GNIVNFNLL 401 (815)
Q Consensus 335 ~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~-~~-l~~~~~~~~~---------~~-~-~~i~~f~~~ 401 (815)
.+++..+++.+. ..+++..+.+..+.+.|.+. +. +. +..|...+.+ .. . +++++|.++
T Consensus 243 ~~~~~~~l~~~~---~~~~~~~~~~~~l~~~L~~~------~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~ 313 (393)
T 1n8p_A 243 AWLTHRGLKTLH---LRVRQAALSANKIAEFLAAD------KENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIK 313 (393)
T ss_dssp HHHHHHHHTTHH---HHHHHHHHHHHHHHHHHTSC------TTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEES
T ss_pred HHHHHhccchHH---HHHHHHHHHHHHHHHHHHhC------CCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeC
Confidence 444444444322 22355566677777777765 33 33 2222110001 11 4 789999987
Q ss_pred cCCCCccCHHHHHHhhhcCCcEeccCccCCchhh---hhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC
Q psy16512 402 HKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSC---QRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA 478 (815)
Q Consensus 402 ~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~---~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~ 478 (815)
+.. . ....+...+...+|.++.|..|+.... ..+..++.+. +. .-|...+.||+|+|.+
T Consensus 314 ~~~-~--~~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~-~~--------------~~g~~~~~iRlS~g~~ 375 (393)
T 1n8p_A 314 GGA-E--AASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEA-RE--------------ASGVFDDLVRISVGIE 375 (393)
T ss_dssp SCH-H--HHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTT-TT--------------TTSCCTTEEEEECCSS
T ss_pred CcH-H--HHHHHHhhCCcceECCCCCCCcceeeccccccccccCHHH-HH--------------hcCCCCCeEEEEEccC
Confidence 421 1 112355566667788888877764321 1111111100 00 1133358999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy16512 479 SNWDDVKYFLSFLNQY 494 (815)
Q Consensus 479 ~t~edi~~lv~~L~~~ 494 (815)
+++++++++.++|+++
T Consensus 376 ~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 376 DTDDLLEDIKQALKQA 391 (393)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999999875
No 108
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.90 E-value=1e-22 Score=227.11 Aligned_cols=330 Identities=10% Similarity=0.065 Sum_probs=218.3
Q ss_pred hhhhhccc-ccchhhHHHHHHHHhhccccCCCCh---hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHH
Q psy16512 64 YLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGN---SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 64 yLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~---~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~ 139 (815)
|+++...+ ..++.+.+++.+.+... ..+++.. +..... ..++++++++++|.+ + .|++++|++ ++..
T Consensus 51 ~~~~~~~~~~~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~----~~~l~~~la~~~~~~-~--~i~~~sG~~-a~~~ 121 (401)
T 2bwn_A 51 WCGNDYLGMGQHPVVLAAMHEALEAV-GAGSGGTRNISGTTAY----HRRLEAEIAGLHQKE-A--ALVFSSAYN-ANDA 121 (401)
T ss_dssp CSCSCTTSGGGCHHHHHHHHHHHHHH-CSCCCSBTTTBCCBHH----HHHHHHHHHHHTTCS-E--EEEESCHHH-HHHH
T ss_pred eeCCCcccCCCCHHHHHHHHHHHHHc-CCCCCCcCcccCChHH----HHHHHHHHHHHhCCC-c--EEEECCcHH-HHHH
Confidence 44443323 23567888887766542 2233311 222334 889999999999973 3 388887776 7777
Q ss_pred HHhhhc-cCCCc-EEEecCCCcchhhHHHHhhccceEEcCchhhhcchhhhhhhhhhhhhcC-CCccEEEEecccCCCcc
Q psy16512 140 VSEYFE-FNEGS-FIYLTDNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMR-HSNSLFVYPAESNFSGT 216 (815)
Q Consensus 140 ~~~al~-~~~gd-vv~~~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~l~~~~~~~~-~~t~lv~i~~~~n~tG~ 216 (815)
++.++. +.+|| |++...+|+++.......+.. .+.++.+ +.+.++++++ ... +++++|++++++||||.
T Consensus 122 ~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~-~~~v~~~---d~~~le~~l~----~~~~~~~~~v~~~~~~nptG~ 193 (401)
T 2bwn_A 122 TLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGP-KRIFRHN---DVAHLRELIA----ADDPAAPKLIAFESVYSMDGD 193 (401)
T ss_dssp HHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCC-EEEECTT---CHHHHHHHHH----HSCTTSCEEEEEESBCTTTCC
T ss_pred HHHHHhcCCCCCEEEECchhhHHHHHHHHHcCCe-EEEEcCC---CHHHHHHHHH----hhccCCceEEEEecCcCCCCC
Confidence 766553 25888 888888998876544332211 3333332 3444544332 222 47899999999999999
Q ss_pred ccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC-CCC--C---CCC--CCcEEEEccccccccCCcceEEEEe
Q psy16512 217 KYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-MLD--L---KQH--QPDFISISFYKMFGYPTGLGALIVK 288 (815)
Q Consensus 217 ~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-~~d--l---~~~--~~D~vv~S~~K~~g~p~G~G~l~~~ 288 (815)
+.|+++|.++|+ ++|+++|+|++++.|.. +.. + ... .+|+++.|++|+|+ .+| |+++.+
T Consensus 194 ~~~l~~i~~l~~-----------~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~-~~G-G~~~~~ 260 (401)
T 2bwn_A 194 FGPIKEICDIAE-----------EFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYG-VFG-GYIAAS 260 (401)
T ss_dssp BCCHHHHHHHHH-----------HHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTC-SCC-EEEEEC
T ss_pred cCCHHHHHHHHH-----------HcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhcc-CCC-CEEecC
Confidence 999999999999 89999999999986532 110 0 011 35899999999999 456 898888
Q ss_pred cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHH
Q psy16512 289 QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR--KSFTNAFELSQYTYFYF 366 (815)
Q Consensus 289 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~--~~~~~~~~l~~~l~~~L 366 (815)
+++.+.+.... ....+..++++ ..++++.++++++...+ ...++.+++++++.+.|
T Consensus 261 ~~~~~~l~~~~---------------------~~~~~~~~~~~-~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 318 (401)
T 2bwn_A 261 ARMVDAVRSYA---------------------PGFIFSTSLPP-AIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRL 318 (401)
T ss_dssp HHHHHHHHHHC---------------------HHHHTSBCCCH-HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC---------------------cCceecCCCCH-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 76654432110 00123344544 67777778888876542 22388899999999999
Q ss_pred HhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHH
Q psy16512 367 KQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDIT 445 (815)
Q Consensus 367 ~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~ 445 (815)
+++ +++++.+. ++++++.++.. .+..++.+.| .++||.++++..+..+
T Consensus 319 ~~~-------g~~~~~~~--------~~~~~~~~~~~----~~~~~~~~~L~~~~gi~v~~~~~~~~~------------ 367 (401)
T 2bwn_A 319 KAL-------GMPIIDHG--------SHIVPVVIGDP----VHTKAVSDMLLSDYGVYVQPINFPTVP------------ 367 (401)
T ss_dssp HHH-------TCCBCCCS--------SSCEEEECCCH----HHHHHHHHHHHHHHCEECCEECTTTSC------------
T ss_pred HHC-------CCcccCCC--------CCeEEEEeCCh----HHHHHHHHHHHhcCCEEEeecCCCCCC------------
Confidence 886 45555332 46888877531 1233577777 5889999876432100
Q ss_pred HHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 446 IKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 446 ~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
...+++|+|++.+++++|+++++++|++++.
T Consensus 368 --------------------~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~ 398 (401)
T 2bwn_A 368 --------------------RGTERLRFTPSPVHDLKQIDGLVHAMDLLWA 398 (401)
T ss_dssp --------------------TTCCEEEECCCTTSCHHHHHHHHHHHHHHC-
T ss_pred --------------------CCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Confidence 0126899999999999999999999998753
No 109
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.90 E-value=5.4e-22 Score=228.01 Aligned_cols=323 Identities=13% Similarity=0.080 Sum_probs=215.3
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccC-------------CCc-EEEecCCCcchhhHHHHhhc--
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFN-------------EGS-FIYLTDNHTSVLGMRELVKT-- 170 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~-------------~gd-vv~~~~~h~s~~~~~~~~~~-- 170 (815)
.+++.+++++++|.+.+...++||+|+|+|+..++.++... +++ |+++...|+++......++.
T Consensus 137 e~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~ 216 (511)
T 3vp6_A 137 EQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGT 216 (511)
T ss_dssp HHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHcCCCC
Confidence 56788999999999853234999999999999888777521 455 77888899999887777654
Q ss_pred -cc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEe
Q psy16512 171 -NQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLD 248 (815)
Q Consensus 171 -~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD 248 (815)
.. .++++.++.++++.++++|+... .....+++|++++++|++|.+.|+++|+++|+ ++|+++|+|
T Consensus 217 ~~~~~v~~d~~~~~d~~~Le~~i~~~~-~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~-----------~~~~~lhvD 284 (511)
T 3vp6_A 217 DNVILIKCNERGKIIPADFEAKILEAK-QKGYVPFYVNATAGTTVYGAFDPIQEIADICE-----------KYNLWLHVD 284 (511)
T ss_dssp GGEEEECBCTTSCBCHHHHHHHHHHHH-HTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHH-----------HHTCEEEEE
T ss_pred CcEEEeecCCCCccCHHHHHHHHHHHH-hcCCCcEEEEEecCCCCCcccccHHHHHHHHH-----------HcCCEEEEE
Confidence 22 56677677788888888664211 11223899999999999999999999999999 899999999
Q ss_pred cccccCCCCCC-----CC-CCCCcEEEEccccccccCCcceEEEEeccc-cccc---CcccccCceEEEEecCCcccccc
Q psy16512 249 AATYCGSNMLD-----LK-QHQPDFISISFYKMFGYPTGLGALIVKQKS-AHVL---NKTFYGGGTVKISMANENFHIKK 318 (815)
Q Consensus 249 ~a~~~g~~~~d-----l~-~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~-~~~l---~~~~~g~~~~~~~~~~~~~~~~~ 318 (815)
++++.+....+ +. ..++|++++++||||+.|.|+|+++++++. ++.. .+.+...... .... .+
T Consensus 285 ~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~----~~~~---~~ 357 (511)
T 3vp6_A 285 AAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDK----HYDV---SY 357 (511)
T ss_dssp ETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSC----SSCG---GG
T ss_pred ccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCccc----cccc---cc
Confidence 99988765321 11 125799999999999989999999998753 3221 1222111100 0000 00
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceE
Q psy16512 319 DGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK--SFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIV 396 (815)
Q Consensus 319 ~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~--~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~ 396 (815)
......+..+. . ...+++..+++.+...+. .+++..++++++.+.|+++ |+++++.+.. ...+++
T Consensus 358 ~~~~~~~~~~r-~-~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~------pg~~l~~~~~-----p~~~~v 424 (511)
T 3vp6_A 358 DTGDKAIQCGR-H-VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR------EEFEMVFNGE-----PEHTNV 424 (511)
T ss_dssp CCGGGSSCSSC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC------TTEEESSSSC-----CSSSCE
T ss_pred CccCCCCCCCC-c-hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC------CCEEEEecCC-----CCeEEE
Confidence 00001112222 1 234455566665544332 2288999999999999988 8999987311 135778
Q ss_pred EEEEecCC--C---CccC-------HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccC
Q psy16512 397 NFNLLHKD--G---TYYG-------YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIID 464 (815)
Q Consensus 397 ~f~~~~~~--~---~~~~-------~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~ 464 (815)
+|.+.... . .... ..++.+.|.++|+.+..... .
T Consensus 425 ~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~-----~----------------------------- 470 (511)
T 3vp6_A 425 CFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQP-----Q----------------------------- 470 (511)
T ss_dssp EEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEE-----E-----------------------------
T ss_pred EEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEE-----e-----------------------------
Confidence 88764211 0 0000 12466777777865432100 0
Q ss_pred CCCceEEEEec-cCCCCHHHHHHHHHHHHHHH
Q psy16512 465 GKPTGSIRISY-GHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 465 ~~~~g~iRvs~-g~~~t~edi~~lv~~L~~~~ 495 (815)
+...+++|+++ +..++.+||++++++|+++-
T Consensus 471 ~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~ 502 (511)
T 3vp6_A 471 GDKANFFRMVISNPAATQSDIDFLIEEIERLG 502 (511)
T ss_dssp TTEEEEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 00126899999 78999999999999998864
No 110
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.90 E-value=1.4e-22 Score=229.54 Aligned_cols=301 Identities=12% Similarity=0.091 Sum_probs=203.5
Q ss_pred HHHHHHHHHhHc----CC-CCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch
Q psy16512 107 IDQMRTKILQYF----NT-DSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD 179 (815)
Q Consensus 107 ~~~~r~~la~~~----g~-~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~ 179 (815)
..++|+.+++++ |. ++++ |++|+|+++|+.+++.++. ++|| |++..+.|+++.......+... .++.+.+
T Consensus 120 ~~~lr~~ia~~~~~~~g~~~~~~--v~~t~G~~~al~~~~~~l~-~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~ 196 (448)
T 3aow_A 120 FTPLRETLMKWLGKRYGISQDND--IMITSGSQQALDLIGRVFL-NPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDE 196 (448)
T ss_dssp CHHHHHHHHHHHHHHHCCCTTSE--EEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT
T ss_pred cHHHHHHHHHHHHHhcCcCChhh--EEEeCcHHHHHHHHHHHHc-CCCCEEEEeCCChHHHHHHHHHcCCEEEEeccCCC
Confidence 667888888888 98 5554 9999999999999999997 8999 8888877776654443322111 4555543
Q ss_pred hhhcchhhhhhhhhhhhhcCCCccEE-EEecccCCCccccChH---HHHHHhhccccccccccCCCCeEEEEecccccCC
Q psy16512 180 DARNMLNEFKESQENVENMRHSNSLF-VYPAESNFSGTKYPLS---WCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS 255 (815)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~t~lv-~i~~~~n~tG~~~~l~---~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~ 255 (815)
+ ++++.++++++... ...+++++| ++++++||||.++|.+ +|.++|+ ++|+++|+|++++...
T Consensus 197 g-~d~~~L~~~l~~~~-~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~-----------~~~~~lI~De~y~~~~ 263 (448)
T 3aow_A 197 G-MKVEILEEKLKELK-SQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELAS-----------EYDFIVVEDDPYGELR 263 (448)
T ss_dssp E-ECHHHHHHHHHHHH-HTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHH-----------HHTCEEEEECSCTTCB
T ss_pred C-CCHHHHHHHHhhhh-ccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHH-----------HcCCEEEEECCCcccc
Confidence 3 66777666442000 011368887 5789999999999976 4566666 8999999999987642
Q ss_pred ----CCCCCC---CCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCcccccc
Q psy16512 256 ----NMLDLK---QHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFE 326 (815)
Q Consensus 256 ----~~~dl~---~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (815)
...++. ..+.++++.||+|+|+ | | +||+++++++++.+..... ..
T Consensus 264 ~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~-GlriG~v~~~~~l~~~l~~~~~-----------------------~~- 317 (448)
T 3aow_A 264 YSGNPEKKIKALDNEGRVIYLGTFSKILA-P-GFRIGWMVGDPGIIRKMEIAKQ-----------------------ST- 317 (448)
T ss_dssp CSSCCCCCTGGGCTTSCEEEEEESTTTTC-G-GGCCEEEEECHHHHHHHHHHHH-----------------------HH-
T ss_pred CCCCCCcCHHhcCCCCCEEEEccchhhcc-c-cccEEEEEeCHHHHHHHHHHHH-----------------------Hh-
Confidence 122222 2346789999999999 6 7 7999999887765532210 01
Q ss_pred CCCCChhHHHHHHHHHHHH--Hhhhhh-HHHHHHHHHHHHHHHHhccccCCCC-cEEEcCCCCCCCCCcccceEEEEEec
Q psy16512 327 DGTVNYLAIISLKYGFDTM--EKKRKS-FTNAFELSQYTYFYFKQLSYSNGQP-LVELYHDTDYGESKYQGNIVNFNLLH 402 (815)
Q Consensus 327 ~gt~~~~~~~al~~al~~l--~~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p-~~~l~~~~~~~~~~~~~~i~~f~~~~ 402 (815)
..+.+.+...++.++++.. ...-.. .++++++++++.+.|++.. | ++++..+.. +.++++.++.
T Consensus 318 ~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-----~~g~~~~~p~~-------g~~~~v~~~~ 385 (448)
T 3aow_A 318 DLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFM-----PEGVKWTKPEG-------GMFIWVTLPD 385 (448)
T ss_dssp HSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CTTCEECCCSB-------SSEEEEECST
T ss_pred cCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEeCCCc-------cEEEEEEcCC
Confidence 1234556666666666531 111112 2667788888888887631 4 577765543 6778888763
Q ss_pred CCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHH
Q psy16512 403 KDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWD 482 (815)
Q Consensus 403 ~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~e 482 (815)
. ++..++.+.|.++||.+++|..|.+. +...+++|+|++.. +++
T Consensus 386 ~----~~~~~l~~~l~~~gV~v~pg~~f~~~-------------------------------~~~~~~iRls~~~~-~~e 429 (448)
T 3aow_A 386 G----IDSKKMLERAIKKGVAYVPGEAFYAH-------------------------------RDVKNTMRLNFTYV-DED 429 (448)
T ss_dssp T----CCHHHHHHHHHHTTEECEEGGGGSTT-------------------------------CCCCSEEEEECSSS-CTH
T ss_pred C----CCHHHHHHHHHHCCcEEEcchhhcCC-------------------------------CCCCCEEEEEeCCC-CHH
Confidence 1 23345777787789999988655321 01137899999864 789
Q ss_pred HHHHHHHHHHHHHhh
Q psy16512 483 DVKYFLSFLNQYFLQ 497 (815)
Q Consensus 483 di~~lv~~L~~~~~~ 497 (815)
++++++++|.+++.+
T Consensus 430 ~i~~~~~~L~~~l~~ 444 (448)
T 3aow_A 430 KIMEGIKRLAETIKE 444 (448)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987743
No 111
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.90 E-value=1.6e-22 Score=223.43 Aligned_cols=288 Identities=9% Similarity=0.002 Sum_probs=195.2
Q ss_pred HHHHHHHHHhHc----CC--CCCceeEEecCCchhhHHHHHhhhccCC--Cc-EEEecCCCcchhhHHHHhhccc-eEEc
Q psy16512 107 IDQMRTKILQYF----NT--DSDHYSVIFTSGATSAIKTVSEYFEFNE--GS-FIYLTDNHTSVLGMRELVKTNQ-IYSF 176 (815)
Q Consensus 107 ~~~~r~~la~~~----g~--~~~~~~iv~t~g~t~al~~~~~al~~~~--gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~ 176 (815)
..++|+.+++++ |+ ++++ |++|+|+++|+.+++.++. ++ || |++....|+++.......+... .++.
T Consensus 61 ~~~lr~~la~~l~~~~g~~~~~~~--i~~t~g~~~al~~~~~~~~-~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~ 137 (376)
T 3ezs_A 61 EESLRAAQRGFFKRRFKIELKENE--LISTLGSREVLFNFPSFVL-FDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPL 137 (376)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCGGG--EEEESSSHHHHHHHHHHHT-TTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhCCCCCHHH--EEECcCcHHHHHHHHHHHc-CCCCCCEEEEecCCcHhHHHHHHHcCCEEEEccc
Confidence 445666666655 87 5666 9999999999999999997 88 88 8888888877655444333222 6677
Q ss_pred CchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC
Q psy16512 177 SVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN 256 (815)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~ 256 (815)
+.++.+++ .+++++ .+++++|++++++||||.++|.+++.++++ .|+++|+++|+|++++....
T Consensus 138 ~~~~~~~~-~l~~~~-------~~~~~~v~~~~p~nptG~~~~~~~l~~i~~--------~~~~~~~~li~De~~~~~~~ 201 (376)
T 3ezs_A 138 TKENDFTP-SLNEKE-------LQEVDLVILNSPNNPTGRTLSLEELISWVK--------LALKHDFILINDECYSEIYE 201 (376)
T ss_dssp CGGGTSCC-CCCHHH-------HHHCSEEEECSSCTTTCCCCCHHHHHHHHH--------HHHHHTCEEEEECTTTTCBS
T ss_pred CCCCCcch-hHHhhh-------ccCCCEEEEcCCCCCcCCCCCHHHHHHHHH--------HHHHcCcEEEEEccchhhcc
Confidence 66654554 444433 246899999999999999999776655543 23389999999999875322
Q ss_pred ---CCCCC---------CCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCcc
Q psy16512 257 ---MLDLK---------QHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLF 322 (815)
Q Consensus 257 ---~~dl~---------~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 322 (815)
+.++. ..+.++++.|+||+|| ++| +|+++.++++++.+....
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~----------------------- 257 (376)
T 3ezs_A 202 NTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSS-APGLRSGFIAGDSRLLEKYKAFR----------------------- 257 (376)
T ss_dssp SSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTT-CGGGCCEEEEECHHHHHHHHHHH-----------------------
T ss_pred CCCCCCHHHccccccccccCcEEEEecchhccC-CccceeEEEeeCHHHHHHHHHHH-----------------------
Confidence 22211 3467799999999998 446 799999887766553211
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEec
Q psy16512 323 EKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLH 402 (815)
Q Consensus 323 ~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~ 402 (815)
....++.+.....++.++++.........++..++++++.+.|+ ++. .+ ..+.++++.++
T Consensus 258 -~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~---------~~~--~~-------~~~~~~~~~~~- 317 (376)
T 3ezs_A 258 -AYLGYTSANAIQKASEAAWLDDRHAEFFRNIYANNLKLARKIFK---------NTL--IY-------PYSFYVYLPVQ- 317 (376)
T ss_dssp -TTTCCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHST---------TCC--CC-------SBSSEEEEECS-
T ss_pred -hhhcCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhc---------CCC--CC-------CcceEEEEECC-
Confidence 12234667777777777776422221122556666666666554 111 12 23667777765
Q ss_pred CCCCccCHHHHHHhhhc-CCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCH
Q psy16512 403 KDGTYYGYSEVQNLANL-KKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNW 481 (815)
Q Consensus 403 ~~~~~~~~~~v~~~l~~-~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ 481 (815)
+ ..++.+.|.+ +||.+++|..|.... ...+++|+|++. ++
T Consensus 318 -~-----~~~~~~~l~~~~gi~v~~g~~~~~~~-------------------------------~~~~~iRis~~~--~~ 358 (376)
T 3ezs_A 318 -N-----GENFAKTLYQNEGIITLPALYLGRNR-------------------------------IGADYVRLALVY--DT 358 (376)
T ss_dssp -C-----HHHHHHHHHHHHCCBCEEGGGGCSTT-------------------------------TTTTEEEEECCS--CH
T ss_pred -C-----HHHHHHHHHHhCCEEEeCcHHhCCCC-------------------------------CCCCeEEEEEcC--CH
Confidence 1 2346777766 899999987765311 114799999984 89
Q ss_pred HHHHHHHHHHHHHHh
Q psy16512 482 DDVKYFLSFLNQYFL 496 (815)
Q Consensus 482 edi~~lv~~L~~~~~ 496 (815)
+++++++++|.+++.
T Consensus 359 ~~i~~~l~~l~~~l~ 373 (376)
T 3ezs_A 359 PLLEKPLEIIETYRE 373 (376)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999774
No 112
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.90 E-value=9.9e-23 Score=227.69 Aligned_cols=301 Identities=13% Similarity=0.104 Sum_probs=201.9
Q ss_pred HHHHHHHHHhHc----C--CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc
Q psy16512 107 IDQMRTKILQYF----N--TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~~----g--~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~ 178 (815)
..++++.+++++ | +++++ |++|+|+++|+.+++.++. ++|| |++....|+++.......+... .++.+.
T Consensus 77 ~~~l~~~la~~~~~~~g~~~~~~~--v~~t~g~t~a~~~~~~~~~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~ 153 (407)
T 2zc0_A 77 IPELREELAAFLKKYDHLEVSPEN--IVITIGGTGALDLLGRVLI-DPGDVVITENPSYINTLLAFEQLGAKIEGVPVDN 153 (407)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCGGG--EEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET
T ss_pred CHHHHHHHHHHHHHhcCCCCCcce--EEEecCHHHHHHHHHHHhc-CCCCEEEEeCCChHHHHHHHHHcCCEEEEcccCC
Confidence 677888888888 8 45555 9999999999999999997 8898 8888877776544433322211 455544
Q ss_pred hhhhcchhhhhhhhhhhhhcCCCccEE-EEecccCCCccccChH---HHHHHhhccccccccccCCCCeEEEEecccccC
Q psy16512 179 DDARNMLNEFKESQENVENMRHSNSLF-VYPAESNFSGTKYPLS---WCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG 254 (815)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~t~lv-~i~~~~n~tG~~~~l~---~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g 254 (815)
++ ++++.++++++.... ..+++++| ++++++||||.++|.+ +|.++|+ ++|+++|+|++++.+
T Consensus 154 ~~-~d~~~l~~~l~~~~~-~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~-----------~~~~~li~De~~~~~ 220 (407)
T 2zc0_A 154 DG-MRVDLLEEKIKELKA-KGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIAS-----------KYDLLIIEDTAYNFM 220 (407)
T ss_dssp TE-ECHHHHHHHHHHHHH-TTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHH-----------HHTCEEEEECTTTTS
T ss_pred CC-CCHHHHHHHHHhhhc-ccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEECCCccc
Confidence 33 666666654421000 11367887 5789999999999998 6777777 899999999998764
Q ss_pred CC----CCCCCCC---CCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccc
Q psy16512 255 SN----MLDLKQH---QPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKF 325 (815)
Q Consensus 255 ~~----~~dl~~~---~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 325 (815)
.. ..++..+ +.++++.|+||+|+ | | +|++++++++++.+......
T Consensus 221 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~-G~r~G~~~~~~~~~~~~~~~~~~------------------------ 274 (407)
T 2zc0_A 221 RYEGGDIVPLKALDNEGRVIVAGTLSKVLG-T-GFRIGWIIAEGEILKKVLMQKQP------------------------ 274 (407)
T ss_dssp BSSCSSCCCGGGGCSSCCEEEEEESTTTTC-T-TSCCEEEECCHHHHHHHHHHHTT------------------------
T ss_pred ccCCCCCCChhhcCCCCCEEEEcccccccC-C-CcceEEEecCHHHHHHHHHHHHh------------------------
Confidence 32 1222222 34578899999999 6 5 89999988776655322100
Q ss_pred cCCCCChhHHHHHHHHHHHH--H-hhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEe
Q psy16512 326 EDGTVNYLAIISLKYGFDTM--E-KKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLL 401 (815)
Q Consensus 326 ~~gt~~~~~~~al~~al~~l--~-~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~ 401 (815)
...+.+.....++..+++.. . ..-... ++..++++++.+.|++.. |+++++.+. .+.++++.++
T Consensus 275 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-----~~~~~~~~~-------~~~~~~~~~~ 342 (407)
T 2zc0_A 275 IDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHL-----PNAEFTKPI-------AGMFVMFFLP 342 (407)
T ss_dssp TTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHC-----TTSCBCCCS-------BSSEEEEECS
T ss_pred hcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEecCC-------CcEEEEEEcC
Confidence 01123555666665666542 1 111222 777888899999997631 455554433 2567778775
Q ss_pred cCCCCccCHHHHHHhhhcC-CcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCC
Q psy16512 402 HKDGTYYGYSEVQNLANLK-KIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASN 480 (815)
Q Consensus 402 ~~~~~~~~~~~v~~~l~~~-gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t 480 (815)
.. ++..++.+.|.++ ||.+++|..|.... ...+++|+|++.. +
T Consensus 343 ~~----~~~~~l~~~l~~~~gi~v~~g~~~~~~~-------------------------------~~~~~iRis~~~~-~ 386 (407)
T 2zc0_A 343 EG----ADGISFANELMEREGVVVVPGKPFYTDE-------------------------------SGKNAIRLNFSRP-S 386 (407)
T ss_dssp TT----CCHHHHHHHHHHHTCEECBCSGGGCSSS-------------------------------CCTTEEEEECSSS-C
T ss_pred CC----CCHHHHHHHHHHhCCeEEECchhccCCC-------------------------------CCCCeEEEEeCCC-C
Confidence 31 2334577777766 99999887654321 0137899999977 8
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy16512 481 WDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 481 ~edi~~lv~~L~~~~~~ 497 (815)
++++++++++|.+++.+
T Consensus 387 ~~~i~~~~~~l~~~l~~ 403 (407)
T 2zc0_A 387 KEEIPIGIKKLAKLYKE 403 (407)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987643
No 113
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.89 E-value=5.9e-22 Score=219.95 Aligned_cols=305 Identities=16% Similarity=0.102 Sum_probs=205.0
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
..+++++++++++.+ + .+++++| ++|+.+++.++. ++|| |++...+|++.+. +...+...| ...++.+
T Consensus 54 ~~~l~~~la~~~~~~-~--~i~~~sG-t~a~~~~~~~~~-~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--- 125 (386)
T 1cs1_A 54 RDVVQRALAELEGGA-G--AVLTNTG-MSAIHLVTTVFL-KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG--- 125 (386)
T ss_dssp HHHHHHHHHHHHTCS-E--EEEESSH-HHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTT---
T ss_pred HHHHHHHHHHHhCCC-c--EEEeCCH-HHHHHHHHHHHh-CCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCC---
Confidence 788999999999986 3 3777666 899999999986 8898 8899999988665 334445556 3333322
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++++ .+++++|++++++||||.+.|+++|.++|+ ++|+++|+|++++.+....++ .
T Consensus 126 d~~~l~~~i-------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~-----------~~~~~li~De~~~~~~~~~~~-~ 186 (386)
T 1cs1_A 126 DEQALRAAL-------AEKPKLVLVESPSNPLLRVVDIAKICHLAR-----------EVGAVSVVDNTFLSPALQNPL-A 186 (386)
T ss_dssp CHHHHHHHH-------HTCCSEEEEECSCTTTCCCCCHHHHHHHHH-----------HTTCEEEEECTTTCTTTCCGG-G
T ss_pred CHHHHHHhh-------ccCCcEEEEeCCCCCCCcccCHHHHHHHHH-----------HcCCEEEEECCCcccccCCcc-c
Confidence 445555533 257899999999999999999999999999 899999999999887654333 4
Q ss_pred CCCcEEEEccccccccCCcc--eEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTGL--GALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G~--G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|+++.|+||++++|.+. |++++++ ++++.+.+...+ ..++.+....+++.
T Consensus 187 ~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~------------------------~~~~~~~~~~~~~~ 242 (386)
T 1cs1_A 187 LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANN------------------------IGVTGGAFDSYLLL 242 (386)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHH------------------------HTCBCCHHHHHHHH
T ss_pred cCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHh------------------------cCCCCCHHHHHHHH
Confidence 57899999999999977663 9999987 666555332211 12344555555444
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEc-CCCCCCC---------CCcccceEEEEEecCCCCccC
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELY-HDTDYGE---------SKYQGNIVNFNLLHKDGTYYG 409 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~-~~~~~~~---------~~~~~~i~~f~~~~~~~~~~~ 409 (815)
.+++.+.. ..++..+.++.+.+.|+++ +.+.-+ .+.-... ....++++.|.+.+.
T Consensus 243 ~~l~~~~~---~~~~~~~~~~~l~~~l~~~------~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 307 (386)
T 1cs1_A 243 RGLRTLVP---RMELAQRNAQAIVKYLQTQ------PLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD------ 307 (386)
T ss_dssp HHHTTHHH---HHHHHHHHHHHHHHHHTTC------TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC------
T ss_pred hcccHHHH---HHHHHHHHHHHHHHHHhcC------CCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC------
Confidence 45443321 2255666677777777776 344322 1110000 023488999987642
Q ss_pred HHHHHHhhhcCCcEecc---C------ccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCC
Q psy16512 410 YSEVQNLANLKKIQLRT---G------CHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASN 480 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~---g------~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t 480 (815)
...+.+.|.++||.++. | +.|..... ..... +.+..+ |...+++|+|++.+++
T Consensus 308 ~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~~~~~---~~~~~-~~~~~~--------------g~~~~~iRis~~~~~~ 369 (386)
T 1cs1_A 308 EQTLRRFLGGLSLFTLAESLGGVESLISHAATMTH---AGMAP-EARAAA--------------GISETLLRISTGIEDG 369 (386)
T ss_dssp HHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTTT---TTSCH-HHHHHH--------------TCCTTEEEEECCSSCH
T ss_pred HHHHHHHHHhCCcceEcccCCCcceeeeccccccc---ccCCH-HHHHhc--------------CCCCCeEEEEEccCCH
Confidence 23577888899999874 4 22221110 00110 111111 2334899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy16512 481 WDDVKYFLSFLNQYF 495 (815)
Q Consensus 481 ~edi~~lv~~L~~~~ 495 (815)
+++++++.++|+++.
T Consensus 370 ~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 370 EDLIADLENGFRAAN 384 (386)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998753
No 114
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.89 E-value=2.4e-22 Score=228.91 Aligned_cols=315 Identities=11% Similarity=-0.027 Sum_probs=209.6
Q ss_pred HHHHHHHHHhHcCCCCCc-------eeEEecCCchhhHHHHHhhhccC------------------CCc-EEEecCCCcc
Q psy16512 107 IDQMRTKILQYFNTDSDH-------YSVIFTSGATSAIKTVSEYFEFN------------------EGS-FIYLTDNHTS 160 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~-------~~iv~t~g~t~al~~~~~al~~~------------------~gd-vv~~~~~h~s 160 (815)
.+++.+++++++|.+.+. ...+||+|+|+|+..++.+.... +++ ++++..+|+|
T Consensus 115 E~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s 194 (475)
T 3k40_A 115 EVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSS 194 (475)
T ss_dssp HHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHH
T ss_pred HHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHH
Confidence 567888999999987531 14899999999998888776311 234 7888899999
Q ss_pred hhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccC
Q psy16512 161 VLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCS 239 (815)
Q Consensus 161 ~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~ 239 (815)
+.......+... .++++.++ ++++.++++|+... .....+.+|++++++|++|.+.|+++|+++|+
T Consensus 195 ~~~~~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~-~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~----------- 261 (475)
T 3k40_A 195 VERAGLLGGVKLRSVQSENHR-MRGAALEKAIEQDV-AEGLIPFYAVVTLGTTNSCAFDYLDECGPVGN----------- 261 (475)
T ss_dssp HHHHHHHHTCEEEEECCBTTB-CCHHHHHHHHHHHH-HTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH-----------
T ss_pred HHHHHHHcCCceEEEECCCCC-cCHHHHHHHHHHHH-HCCCccEEEEEEecCCCCcCcCCHHHHHHHHH-----------
Confidence 877666554333 67777777 99999988765211 11123778999999999999999999999999
Q ss_pred CCCeEEEEecccccCCCCCC-----CCC-CCCcEEEEccccccccCCcceEEEEecccc-c-cc--CcccccCceEEEEe
Q psy16512 240 RSNCFVLLDAATYCGSNMLD-----LKQ-HQPDFISISFYKMFGYPTGLGALIVKQKSA-H-VL--NKTFYGGGTVKISM 309 (815)
Q Consensus 240 ~~gi~vivD~a~~~g~~~~d-----l~~-~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~-~-~l--~~~~~g~~~~~~~~ 309 (815)
++|+++|+|++++.+....+ +.. ..+|++++|+|||++.|.|+|++++++... . .+ .+.+..........
T Consensus 262 ~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~ 341 (475)
T 3k40_A 262 KHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAP 341 (475)
T ss_dssp HTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC--------------------
T ss_pred HhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCCcCCCCC
Confidence 89999999999987643211 111 146999999999998899999999987643 1 11 11121111100000
Q ss_pred cCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCC
Q psy16512 310 ANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS--FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYG 387 (815)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~--~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~ 387 (815)
.+. ...++.+. + ...+++..++..+...+.. .++..++++++.+.|+++ |+++++.+..
T Consensus 342 ~~~---------~~~~~~sr-~-~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~------~g~~l~~~~~-- 402 (475)
T 3k40_A 342 DYR---------HWQIPLGR-R-FRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVAD------SRFELAAEIN-- 402 (475)
T ss_dssp ----------------CCCG-G-GTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------TTEEESSCCB--
T ss_pred Ccc---------cccccCCC-c-ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC------CCEEEecCCc--
Confidence 000 01122222 2 2345566666665544322 288999999999999998 8999987543
Q ss_pred CCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCC
Q psy16512 388 ESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKP 467 (815)
Q Consensus 388 ~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~ 467 (815)
.++++|++.+.+. ...++.+.|.++|+...++ ... .|
T Consensus 403 -----~~iv~f~~~~~~~---~~~~l~~~L~~~g~~~~~~-----~~~----------------------------~g-- 439 (475)
T 3k40_A 403 -----MGLVCFRLKGSNE---RNEALLKRINGRGHIHLVP-----AKI----------------------------KD-- 439 (475)
T ss_dssp -----TTEEEEEESSCHH---HHHHHHHHHHHHTSCBCEE-----EEE----------------------------TT--
T ss_pred -----eEEEEEEeCCchH---HHHHHHHHHHhCCcEEEEe-----eEE----------------------------CC--
Confidence 6899999864211 1235667777666543221 100 01
Q ss_pred ceEEEEecc-CCCCHHHHHHHHHHHHHHHh
Q psy16512 468 TGSIRISYG-HASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 468 ~g~iRvs~g-~~~t~edi~~lv~~L~~~~~ 496 (815)
..++|+++. +.+|++||++++++|+++..
T Consensus 440 ~~~lR~~~~~~~tt~~di~~~~~~i~~~~~ 469 (475)
T 3k40_A 440 VYFLRMAICSRFTQSEDMEYSWKEVSAAAD 469 (475)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 378999976 45699999999999998764
No 115
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.89 E-value=1.6e-22 Score=223.49 Aligned_cols=314 Identities=10% Similarity=0.041 Sum_probs=206.5
Q ss_pred cchhhHHHHHHHHhhc-cccCCCChhhhhhhhhhhHHHHHHHHHhHc----CCC--CC-ceeEEecCCchhhHHHHHhhh
Q psy16512 73 YSQSQMNQTIEQLKEN-IFSHPHGNSVLSDFCVSEIDQMRTKILQYF----NTD--SD-HYSVIFTSGATSAIKTVSEYF 144 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~-~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g~~--~~-~~~iv~t~g~t~al~~~~~al 144 (815)
.++.+.+++.+.+... ....+. ... ..++|+.+++++ |++ ++ + |++|+|+++|+.+++.++
T Consensus 39 ~~~~v~~a~~~~~~~~~~~~y~~-----~~~----~~~l~~~ia~~~~~~~g~~~~~~~~--v~~~~g~~~a~~~~~~~l 107 (376)
T 2dou_A 39 PPEAPLKALAEALNDPTTYGYCL-----KSC----TLPFLEEAARWYEGRYGVGLDPRRE--ALALIGSQEGLAHLLLAL 107 (376)
T ss_dssp CCHHHHHHHHHHTTCGGGSSCCC-----HHH----HHHHHHHHHHHHHHHHSCCCCTTTS--EEEESSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCcCCCCC-----CCC----CHHHHHHHHHHHHHHhCCCCCCCcc--EEEcCCcHHHHHHHHHHh
Confidence 3566777776655321 111111 123 677888888887 875 33 5 999999999999999999
Q ss_pred ccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHH
Q psy16512 145 EFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSW 222 (815)
Q Consensus 145 ~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~ 222 (815)
. ++|| |++....|+++.......+... .++.+.....+++.++++++ +++++|++++++||||.++|.++
T Consensus 108 ~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~-------~~~~~v~l~~p~nptG~~~~~~~ 179 (376)
T 2dou_A 108 T-EPEDLLLLPEVAYPSYFGAARVASLRTFLIPLREDGLADLKAVPEGVW-------REAKVLLLNYPNNPTGAVADWGY 179 (376)
T ss_dssp C-CTTCEEEEESSCCHHHHHHHHHTTCEEEEECBCTTSSBCGGGSCHHHH-------HHEEEEEECSSCTTTCCCCCHHH
T ss_pred c-CCCCEEEECCCCcHhHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHhhc-------cCceEEEECCCCCCcCccCCHHH
Confidence 7 8898 8888877777654443322221 34442122356666665442 46899999999999999999655
Q ss_pred ---HHHHhhccccccccccCCCCeEEEEecccccCCC---CCCCC----CCCCcEEEEccccccccCCc--ceEEEEecc
Q psy16512 223 ---CNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN---MLDLK----QHQPDFISISFYKMFGYPTG--LGALIVKQK 290 (815)
Q Consensus 223 ---I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~---~~dl~----~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~ 290 (815)
|.++|+ ++|+++|+|++++.+.. +.++. ..+.++++.|+||+|| ++| +|+++.+++
T Consensus 180 l~~l~~~~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~ 247 (376)
T 2dou_A 180 FEEALGLAR-----------KHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYN-LAGFRLGFALGSEE 247 (376)
T ss_dssp HHHHHHHHH-----------HTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHT-CGGGCCEEEEECHH
T ss_pred HHHHHHHHH-----------HcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcC-ChhheeEEEecCHH
Confidence 555666 89999999999875421 22211 1246788999999998 457 799999888
Q ss_pred cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHhc
Q psy16512 291 SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK-KRKSFTNAFELSQYTYFYFKQL 369 (815)
Q Consensus 291 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~-~~~~~~~~~~l~~~l~~~L~~l 369 (815)
+++.+.... .....+.+.....++.++++.... .....++.+++++++.+.|+++
T Consensus 248 ~~~~l~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 303 (376)
T 2dou_A 248 ALARLERVK------------------------GVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGV 303 (376)
T ss_dssp HHHHHHHHH------------------------HHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHH------------------------HhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 766553221 111224566666666666654211 1112267777888888888653
Q ss_pred cccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHH
Q psy16512 370 SYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFH 449 (815)
Q Consensus 370 ~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~ 449 (815)
++++.+. .+.++++.++.. .+..++.+.|.++||.+++|..|...
T Consensus 304 --------~~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~g~~f~~~---------------- 348 (376)
T 2dou_A 304 --------LSLLPPR-------ATMYLWGRLPEG----VDDLEFGLRLVERGVALAPGRGFGPG---------------- 348 (376)
T ss_dssp --------SEECCCC-------BSSEEEEECCTT----CCHHHHHHHHHHTTEECEEGGGGCGG----------------
T ss_pred --------cCccCCC-------eeEEEEEECCCC----CCHHHHHHHHHHCCEEEcCchhhCCC----------------
Confidence 3444332 245677777531 23345777887779999988665321
Q ss_pred hhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 450 FQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 450 ~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
..+++|+|++. ++++++++++.|++++
T Consensus 349 -----------------~~~~~Ris~~~--~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 349 -----------------GKGFVRIALVR--PLEELLEAAKRIREAL 375 (376)
T ss_dssp -----------------GTTEEEEECCS--CHHHHHHHHHHHHHTC
T ss_pred -----------------CCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence 03789999985 7899999999998754
No 116
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.89 E-value=3.3e-23 Score=234.17 Aligned_cols=277 Identities=17% Similarity=0.125 Sum_probs=202.7
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEc--Cch---
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSF--SVD--- 179 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~--~~~--- 179 (815)
+.++++++++ +|++ + .+++|+|+|+|+.+++.++. ++|| |+++..+|+++.......+... .++. +.+
T Consensus 59 ~~~~~~~la~-~g~~-~--~v~~~~G~t~a~~~~~~a~~-~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~ 133 (446)
T 2x3l_A 59 ILKSMKQVEK-HSDY-D--GYFLVNGTTSGILSVIQSFS-QKKGDILMARNVHKSVLHALDISQQEGHFIETHQSPLTNH 133 (446)
T ss_dssp HHHHHHHHCS-CTTE-E--EEEESSHHHHHHHHHHHTTT-TSSSCEEECTTCCHHHHHHHHHHTCCEEECEEEECTTTSS
T ss_pred HHHHHHHHHh-cCCC-c--eEEEeCCHHHHHHHHHHHhc-CCCCEEEEecCccHHHHHHHHHcCCeEEEEeCeeccccCc
Confidence 7899999999 9986 3 49999999999999999997 8999 9999999999877665544333 4444 322
Q ss_pred -hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC--
Q psy16512 180 -DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-- 256 (815)
Q Consensus 180 -~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-- 256 (815)
..++++.+ ..+++++|++++ .|++|.+.|+++|.++|+ ++|+++++|++|+. ..
T Consensus 134 ~~~~d~~~l----------~~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~-----------~~~~~livDea~~~-~~~f 190 (446)
T 2x3l_A 134 YNKVNLSRL----------NNDGHKLVVLTY-PNYYGETFNVEEVIKSLH-----------QLNIPVLIDEAHGA-HFGL 190 (446)
T ss_dssp EEEEEC-----------------CCEEEEES-SCTTSCCCCHHHHHHHHH-----------HTTCCEEEECTTCT-TTTS
T ss_pred CCCCCHHHH----------cCCCceEEEEEC-CCCCeEecCHHHHHHHHH-----------hcCCeEEEcchhhh-hhcc
Confidence 23444433 135689999999 566999999999999999 89999999999876 22
Q ss_pred ---CCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChh
Q psy16512 257 ---MLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYL 333 (815)
Q Consensus 257 ---~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 333 (815)
+.+....++|+++.|+||+++++.|+|+++++++.++ +.+...+ ...+..+++++.
T Consensus 191 ~~~~~~~~~~g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~-~~~~~~~--------------------~~~~~~~s~~~~ 249 (446)
T 2x3l_A 191 QGFPDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPY-RENIIEY--------------------LSYFQTSSPSYL 249 (446)
T ss_dssp TTSCCCGGGGTCSEEEECHHHHSSSCTTCEEEEEETTCTT-HHHHHHH--------------------HHHHSCSSCCHH
T ss_pred CCCCCChHHcCCCEEEECCccccccccccEEEEEcCCcCC-HHHHHHH--------------------HHHHcCCCchHH
Confidence 4444455789999999997766889999999988654 2111100 123557788998
Q ss_pred HHHHHHHHHHHHHhhhhh-H-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHH
Q psy16512 334 AIISLKYGFDTMEKKRKS-F-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYS 411 (815)
Q Consensus 334 ~~~al~~al~~l~~~~~~-~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~ 411 (815)
.++++.++++++...+.. . ++..++++++.+. . ++++.+.. +..+++.+++ ++..
T Consensus 250 ~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~--g---------~~~~~~~~-------~~~l~i~~~~-----~~~~ 306 (446)
T 2x3l_A 250 IMASLESAAQFYKTYDSTLFFAKRAQLIECLENK--G---------FEMLQVDD-------PLKLLIKYEG-----FTGH 306 (446)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--T---------CEEEECSS-------TTEEEEECTT-----SCHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc--C---------CEECcCCC-------CeEEEEEeCC-----cCHH
Confidence 888888888888876544 3 6777777766665 2 34444322 3456666652 2334
Q ss_pred HHHHhhhcCCcEec-cCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHH
Q psy16512 412 EVQNLANLKKIQLR-TGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSF 490 (815)
Q Consensus 412 ~v~~~l~~~gI~v~-~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~ 490 (815)
++.+.|.++||.++ .| .+++|++++.++|++++ +++++
T Consensus 307 ~l~~~L~~~GI~v~~~g----------------------------------------~~~iRi~~~~~~t~e~i-~l~~a 345 (446)
T 2x3l_A 307 DIQNWFMNAHIYLELAD----------------------------------------DYQALAILPLWHHDDTY-LFDSL 345 (446)
T ss_dssp HHHHHHHHTTEEESEEC----------------------------------------SSCEEEECCCCCTTCCC-CHHHH
T ss_pred HHHHHHHHCCCEEEecC----------------------------------------CCEEEEEeecCCCHHHH-HHHHH
Confidence 58888888899986 32 15799999999999999 99999
Q ss_pred HHHHHh
Q psy16512 491 LNQYFL 496 (815)
Q Consensus 491 L~~~~~ 496 (815)
|++++.
T Consensus 346 L~~~~~ 351 (446)
T 2x3l_A 346 LRKIED 351 (446)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 999753
No 117
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.89 E-value=1.4e-22 Score=223.82 Aligned_cols=338 Identities=14% Similarity=0.095 Sum_probs=210.6
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-E
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-F 151 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-v 151 (815)
.++.+.+++.+.+....+ . .... .+++++.+++++|.+ + +++++|+|+|+.+++.++..++|| |
T Consensus 15 ~~~~~~~a~~~~~~~~~~-~------~~~~----~~~l~~~la~~~~~~--~--~i~~~sgt~al~~~l~~l~~~~gd~V 79 (373)
T 3frk_A 15 IEYEIKFKFEEIYKRNWF-I------LGDE----DKKFEQEFADYCNVN--Y--CIGCGNGLDALHLILKGYDIGFGDEV 79 (373)
T ss_dssp HHHHHHHHHHHHHHHTCC-S------SSHH----HHHHHHHHHHHHTSS--E--EEEESCHHHHHHHHHHHTTCCTTCEE
T ss_pred CCHHHHHHHHHHHHCCCc-c------CCch----HHHHHHHHHHHhCCC--e--EEEeCCHHHHHHHHHHHcCCCCcCEE
Confidence 345666666665543322 1 1233 889999999999985 3 899999999999999999338998 9
Q ss_pred EEecCCCcchhhHHHHhhccc-eEEcCc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhc
Q psy16512 152 IYLTDNHTSVLGMRELVKTNQ-IYSFSV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRN 229 (815)
Q Consensus 152 v~~~~~h~s~~~~~~~~~~~g-~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~ 229 (815)
+++..+|+++.......+... .+++++ +..++++.+++++ ++++++|+ ++|+||...|+++|.++|+
T Consensus 80 i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l-------~~~~~~v~---~~n~~G~~~~l~~i~~l~~- 148 (373)
T 3frk_A 80 IVPSNTFIATALAVSYTGAKPIFVEPDIRTYNIDPSLIESAI-------TEKTKAII---AVHLYGQPADMDEIKRIAK- 148 (373)
T ss_dssp EEETTSCTHHHHHHHHHSCEEEEECEETTTTEECGGGTGGGC-------CTTEEEEE---EECCTTCCCCHHHHHHHHH-
T ss_pred EECCCCcHHHHHHHHHcCCEEEEEeccccccCcCHHHHHHhc-------CCCCeEEE---EECCCcCcccHHHHHHHHH-
Confidence 999999998776554443222 444442 3456777776644 45788888 6789999999999999999
Q ss_pred cccccccccCCCCeEEEEecccccCCCCCCCCCCC--CcEEEEccc--cccccCCcceEEEEecc-cccccCcccccCce
Q psy16512 230 HVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQ--PDFISISFY--KMFGYPTGLGALIVKQK-SAHVLNKTFYGGGT 304 (815)
Q Consensus 230 ~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~--~D~vv~S~~--K~~g~p~G~G~l~~~~~-~~~~l~~~~~g~~~ 304 (815)
++|+++|+|++|+.|.. .+....+ .|++++||+ |+++++...|+++.+++ +.+.+++...++..
T Consensus 149 ----------~~~~~li~D~a~~~g~~-~~~~~~~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~ 217 (373)
T 3frk_A 149 ----------KYNLKLIEDAAQAHGSL-YKGMKVGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSE 217 (373)
T ss_dssp ----------HHTCEEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCS
T ss_pred ----------HcCCEEEEECCcccCCE-ECCEeccccccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCcc
Confidence 89999999999998765 4444445 799999966 99983233567776654 44444433322221
Q ss_pred EEEEecCCcccccccCccccccCCC-CChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCC
Q psy16512 305 VKISMANENFHIKKDGLFEKFEDGT-VNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHD 383 (815)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~gt-~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~ 383 (815)
. .+ .....|. .....+.+ ..++..+.......++.+++++++.+.|.++ + +.+...
T Consensus 218 ~-------~~--------~~~~~g~~~~~~~~~a-a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~-~~~~~~ 274 (373)
T 3frk_A 218 K-------KY--------HHIYKGFNSRLDELQA-GFLRVKLKYLDKWNEERRKIAQKYIAGINNP------N-VIIPVE 274 (373)
T ss_dssp B-------TT--------BCCSCCCBCCCCHHHH-HHHHHHHHTHHHHHHHHHHHHHHHHHHCCCT------T-EECCCC
T ss_pred c-------CC--------ccccccccCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------c-eEeccC
Confidence 0 00 0111121 11111111 1122222222222377888888888888877 4 555432
Q ss_pred CCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCc----cCCchhhhhhcCCCHHHHHHHhhcCCccCCc
Q psy16512 384 TDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGC----HCNPGSCQRFLGLSDITIKFHFQQGHICGDD 459 (815)
Q Consensus 384 ~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~----~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~ 459 (815)
.. .....+..|.+...+ ..++.+.|.++||.++.+. +|.+.. ..++......
T Consensus 275 ~~----~~~~~~~~~~~~~~~-----~~~l~~~L~~~gI~v~~~~~~~~~~~~~~--~~~~~~~~~~------------- 330 (373)
T 3frk_A 275 AD----YAKHVWYTFVIRSEK-----RDELQKYLNNNGIGTLIHYPIPIHLQQAY--KDLGFKTGNF------------- 330 (373)
T ss_dssp CT----TEECCCSSEEEEESS-----HHHHHHHHHHTTBCCBCSCSSCGGGSGGG--GGGCCCTTSS-------------
T ss_pred CC----CCceeeEEEEEEeCC-----HHHHHHHHHHCCCCcccCcCCccccChHH--HhcCCCCCCC-------------
Confidence 21 122333334443322 3458899999999999764 222211 1122211000
Q ss_pred ccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 460 KDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 460 ~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
...+....+.+|+|++.++|++||++++++|+++.
T Consensus 331 -~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~ 365 (373)
T 3frk_A 331 -PIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWK 365 (373)
T ss_dssp -HHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC
T ss_pred -HHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 00000113789999999999999999999998754
No 118
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.89 E-value=2.5e-22 Score=224.69 Aligned_cols=318 Identities=14% Similarity=0.095 Sum_probs=219.9
Q ss_pred cchhhHHHHHHHHhhccccCCCCh--hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGN--SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS 150 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~--~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd 150 (815)
.++.+.+++.+.+.........+. ...... .+++++++++++|.+. .+++ +++++|+..++.++. ++||
T Consensus 74 ~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~----~~~l~~~la~~~g~~~---~i~~-~sGt~a~~~~l~~~~-~~gd 144 (409)
T 3kki_A 74 NHPLIKARLAKSLLEEQQSLFMSASFLQNDYD----KPMIEKRLAKFTGFDE---CLLS-QSGWNANVGLLQTIC-QPNT 144 (409)
T ss_dssp TCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTT----SCHHHHHHHHHHTCSE---EEEE-SCHHHHHHHHHHHHC-CTTC
T ss_pred CCHHHHHHHHHHHHHcCCCCCccccccCCcHH----HHHHHHHHHHHhCCCe---EEEe-cchHHHHHHHHHHhc-CCCC
Confidence 357788888777654211111111 122233 6789999999999864 2555 555799999999997 8999
Q ss_pred -EEEecCCCcchhhHHHHhhccceEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhc
Q psy16512 151 -FIYLTDNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRN 229 (815)
Q Consensus 151 -vv~~~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~ 229 (815)
|++....|+++.......+.. .++++. .++++++++++ ..++++|++++++||||.+.|+++|.++|+
T Consensus 145 ~Vl~~~~~~~~~~~~~~~~g~~-~~~~~~---~d~~~le~~l~------~~~~~~vi~~~~~nptG~~~~l~~l~~la~- 213 (409)
T 3kki_A 145 NVYIDFFAHMSLWEGARYANAQ-AHPFMH---NNCDHLRMLIQ------RHGPGIIVVDSIYSTLGTIAPLAELVNISK- 213 (409)
T ss_dssp EEEEETTSCHHHHHHHHHTTCE-EEEECT---TCHHHHHHHHH------HHCSCEEEEESBCTTTCCBCCHHHHHHHHH-
T ss_pred EEEECCCcCHHHHHHHHHcCCe-EEEecC---CCHHHHHHHHH------hcCCeEEEECCCCCCCCCcCCHHHHHHHHH-
Confidence 888888998876655443221 344332 34555655443 124799999999999999999999999999
Q ss_pred cccccccccCCCCeEEEEecccccCCCC---------CCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccc
Q psy16512 230 HVFKKHFKCSRSNCFVLLDAATYCGSNM---------LDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFY 300 (815)
Q Consensus 230 ~~~~~~~~~~~~gi~vivD~a~~~g~~~---------~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~ 300 (815)
++|+++|+|++++.+... .++ ..++|+++.|++|+|+ +. .|+++.++++++.+.....
T Consensus 214 ----------~~~~~li~De~~~~g~~g~~g~~~~~~~~~-~~~~di~~~s~sK~~~-~~-gg~v~~~~~~~~~~~~~~~ 280 (409)
T 3kki_A 214 ----------EFGCALLVDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFA-YR-AGAIWCNNEVNRCVPFISY 280 (409)
T ss_dssp ----------HHTCEEEEECTTTTTTSSGGGCCHHHHHTC-GGGCSEEEEESSSTTC-SS-CEEEEESSSGGGTHHHHCH
T ss_pred ----------HcCCEEEEECCccccccCCCCCcchhhcCC-CCCCCEEEeecchhhC-CC-ceEEEECHHHHHHHHHhCc
Confidence 899999999999765421 111 1257899999999999 43 4999998887765432110
Q ss_pred cCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEE
Q psy16512 301 GGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVEL 380 (815)
Q Consensus 301 g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l 380 (815)
. ....++.+...+.++.++++.+.......++..++++++.+.|+++ ++++
T Consensus 281 ~----------------------~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~ 331 (409)
T 3kki_A 281 P----------------------AIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL-------GLTI 331 (409)
T ss_dssp H----------------------HHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-------TCCC
T ss_pred C----------------------ccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-------CCcc
Confidence 0 0112345667777888888887665333378899999999999887 4444
Q ss_pred cCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcc
Q psy16512 381 YHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDK 460 (815)
Q Consensus 381 ~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~ 460 (815)
.+ .++++.+.++... +..++.+.|.++||.+++++++..+
T Consensus 332 ~~---------~~~~~~~~~~~~~----~~~~~~~~L~~~Gv~v~~~~~~~~~--------------------------- 371 (409)
T 3kki_A 332 RS---------ESQIIGLETGDER----NTEKVRDYLESNGVFGSVFCRPATS--------------------------- 371 (409)
T ss_dssp CC---------SSSEEEEEEESHH----HHHHHHHHHHHTTEECEEECTTSSC---------------------------
T ss_pred CC---------CCCEEEEEeCCHH----HHHHHHHHHHHCCceEeeeCCCCcC---------------------------
Confidence 31 2678888876421 1234777888889998764332110
Q ss_pred cccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 461 DIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 461 ~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
...+++|++++.+++++|+++++++|++++..
T Consensus 372 -----~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 372 -----KNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp -----TTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -----CCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 11489999999999999999999999998754
No 119
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.89 E-value=1.7e-22 Score=224.84 Aligned_cols=318 Identities=10% Similarity=0.018 Sum_probs=208.9
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhH----cCC---CCC-ceeEEecCCchhhHHHHHhhh
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQY----FNT---DSD-HYSVIFTSGATSAIKTVSEYF 144 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~----~g~---~~~-~~~iv~t~g~t~al~~~~~al 144 (815)
.++.+.+++.+.+. ....++.. .. ..++|+.++++ +|. +++ + |++|+|+++|+.+++.++
T Consensus 44 ~~~~v~~a~~~~~~-~~~~y~~~-----~g----~~~lr~~la~~l~~~~g~~~~~~~~~--i~~t~g~~~al~~~~~~~ 111 (396)
T 3jtx_A 44 TPKVITDALTASLH-ELEKYPLT-----AG----LPELRQACANWLKRRYDGLTVDADNE--ILPVLGSREALFSFVQTV 111 (396)
T ss_dssp CCHHHHHHHHHTGG-GGGSCCCT-----TC----CHHHHHHHHHHHHHHTTTCCCCTTTS--EEEESSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhh-hccCCCCC-----CC----cHHHHHHHHHHHHHhcCCCCCCCCCe--EEEcCCcHHHHHHHHHHH
Confidence 45677777766553 22223321 11 34455555554 474 466 6 999999999999999999
Q ss_pred ccCCC-----c-EEEecCCCcchhhHHHHhhccc-eEEcCchh-hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcc
Q psy16512 145 EFNEG-----S-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD-ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGT 216 (815)
Q Consensus 145 ~~~~g-----d-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~-~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~ 216 (815)
. ++| | |++....|+++.......+... .++++.++ ..+++.++++++ +++++|++++++||||.
T Consensus 112 ~-~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~-------~~~~~v~l~~p~nptG~ 183 (396)
T 3jtx_A 112 L-NPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVW-------KRTKLVFVCSPNNPSGS 183 (396)
T ss_dssp C-CC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHH-------HTEEEEEEESSCTTTCC
T ss_pred h-CCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhc-------cCcEEEEEECCCCCCCC
Confidence 7 785 6 8888888877655444433222 56664433 356667766443 47899999999999999
Q ss_pred ccChHH---HHHHhhccccccccccCCCCeEEEEecccccCC----CCCCC--------CCCCCcEEEEccccccccCCc
Q psy16512 217 KYPLSW---CNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS----NMLDL--------KQHQPDFISISFYKMFGYPTG 281 (815)
Q Consensus 217 ~~~l~~---I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~----~~~dl--------~~~~~D~vv~S~~K~~g~p~G 281 (815)
++|.++ |.++|+ ++|+++|+|++++... .+... ...+.++++.|+||.|+ .+|
T Consensus 184 ~~~~~~l~~i~~~~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G 251 (396)
T 3jtx_A 184 VLDLDGWKEVFDLQD-----------KYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSN-VPG 251 (396)
T ss_dssp CCCHHHHHHHHHHHH-----------HHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSS-CGG
T ss_pred cCCHHHHHHHHHHHH-----------HcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccC-Ccc
Confidence 999888 555555 8999999999987532 12221 02467899999999888 446
Q ss_pred --ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy16512 282 --LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELS 359 (815)
Q Consensus 282 --~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~ 359 (815)
+|+++.++++++.+.... ....++.+.++..++.++++.........++..+++
T Consensus 252 ~r~G~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 307 (396)
T 3jtx_A 252 LRSGFVAGDAELLKNFLLYR------------------------TYHGSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKF 307 (396)
T ss_dssp GCCEEEEECHHHHHHHHHHH------------------------HHHTCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cceEEEEeCHHHHHHHHHHH------------------------hhcccCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 799998887766553211 122346777777777777754222212226777778
Q ss_pred HHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhh
Q psy16512 360 QYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRF 438 (815)
Q Consensus 360 ~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~ 438 (815)
+++.+.|.++ +.+..+. .+.++++.++.. +..++.+.| +++||.+.+|..|......
T Consensus 308 ~~l~~~l~~~--------~~~~~~~-------~~~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~-- 365 (396)
T 3jtx_A 308 ERVIPILQQV--------FDVKLPD-------ASFYIWLKVPDG-----DDLAFARNLWQKAAIQVLPGRFLARDTEQ-- 365 (396)
T ss_dssp HHHHHHHTTT--------SCCCCCS-------SSSEEEEECTTS-----CHHHHHHHHHHHHCEECEEGGGGCCCCTT--
T ss_pred HHHHHHHHhc--------CCccCCC-------eeEEEEEECCCC-----CHHHHHHHHHHHCCEEEeCChHhCCcccc--
Confidence 8888888664 1222222 256777777642 223456656 6789999999876542110
Q ss_pred cCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 439 LGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 439 ~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.....+++|||++. +++++++++++|.+++
T Consensus 366 -------------------------~~~~~~~iRis~~~--~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 366 -------------------------GNPGEGYVRIALVA--DVATCVKAAEDIVSLY 395 (396)
T ss_dssp -------------------------CCTTTTEEEEECCS--CHHHHHHHHHHHHHHC
T ss_pred -------------------------cCCCCCeEEEEEcC--CHHHHHHHHHHHHHHh
Confidence 01124899999985 8999999999998864
No 120
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.89 E-value=1.6e-22 Score=221.37 Aligned_cols=324 Identities=11% Similarity=0.049 Sum_probs=211.2
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVS 141 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~ 141 (815)
.++|+.......++.+.+++.+.+.. . ...+..... .+++++++++++| .+. ++++|+|+|+|+.+++
T Consensus 9 ~id~~~~~~~~~~~~v~~a~~~~~~~----~-~~~~~~~~~----~~~l~~~la~~~g-~~~--~v~~~~~gt~a~~~al 76 (356)
T 1v72_A 9 ALGFSSDNIAGASPEVAQALVKHSSG----Q-AGPYGTDEL----TAQVKRKFCEIFE-RDV--EVFLVPTGTAANALCL 76 (356)
T ss_dssp CCBCSCGGGCCCCHHHHHHHHHTTSS----C-CCSTTCSHH----HHHHHHHHHHHHT-SCC--EEEEESCHHHHHHHHH
T ss_pred eEeeccCCccCCCHHHHHHHHhhccC----c-ccccccchH----HHHHHHHHHHHhC-CCC--cEEEeCCccHHHHHHH
Confidence 35566655566778888887665321 0 111222344 7899999999999 433 4999999999999999
Q ss_pred hhhccCCCc-EEEecCCCcchhhH--HHHhhccc--eEEcCc-hhhhcchhhhh-hhhhhhhhcCCCccEEEEecccCCC
Q psy16512 142 EYFEFNEGS-FIYLTDNHTSVLGM--RELVKTNQ--IYSFSV-DDARNMLNEFK-ESQENVENMRHSNSLFVYPAESNFS 214 (815)
Q Consensus 142 ~al~~~~gd-vv~~~~~h~s~~~~--~~~~~~~g--~v~~~~-~~~~~~~~~~~-~l~~~~~~~~~~t~lv~i~~~~n~t 214 (815)
.++. ++|| |++....|++.+.. ...... | .+.++. ++.++++.+++ +++.......+++++|++++++| |
T Consensus 77 ~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-t 153 (356)
T 1v72_A 77 SAMT-PPWGNIYCHPASHINNDECGAPEFFSN-GAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-V 153 (356)
T ss_dssp HTSC-CTTEEEEECTTSHHHHSSTTHHHHHTT-SCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-T
T ss_pred HHhc-CCCCEEEEcCccchhhhhchHHHHHhC-CcEEEEecCCCCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-C
Confidence 9987 8999 88888788776544 333210 3 333332 24456666665 44300000112689999999876 9
Q ss_pred ccccCh---HHHHHHhhccccccccccCCCCeEEEEeccccc------CCCCCCCC-CCCCcEEEEccccccccCCcceE
Q psy16512 215 GTKYPL---SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC------GSNMLDLK-QHQPDFISISFYKMFGYPTGLGA 284 (815)
Q Consensus 215 G~~~~l---~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~------g~~~~dl~-~~~~D~vv~S~~K~~g~p~G~G~ 284 (815)
|.++|. ++|.++|+ ++|+++|+|++++. +..+..+. ..+.|++++|+||+ |+|.|.|+
T Consensus 154 G~~~~~~~l~~i~~~~~-----------~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~ 221 (356)
T 1v72_A 154 GSIYTLDEIEAIGDVCK-----------SSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAAEAI 221 (356)
T ss_dssp SCCCCHHHHHHHHHHHH-----------HTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSCEEE
T ss_pred CccCCHHHHHHHHHHHH-----------HcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCccEE
Confidence 997765 45666666 89999999998763 22221111 13678999999999 55878889
Q ss_pred EEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh-hhh-HHHHHHHHHHH
Q psy16512 285 LIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK-RKS-FTNAFELSQYT 362 (815)
Q Consensus 285 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~-~~~-~~~~~~l~~~l 362 (815)
+++++++++.+..... ..|+.......++..+++.+... ... .++..++++++
T Consensus 222 ~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 276 (356)
T 1v72_A 222 VLFNTSLATEMSYRRK-------------------------RAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRL 276 (356)
T ss_dssp EESSGGGHHHHHHHHH-------------------------HTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHhhHHHHhh-------------------------ccCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 9888887665432110 01111111223333334433321 011 26778889999
Q ss_pred HHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCC
Q psy16512 363 YFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLS 442 (815)
Q Consensus 363 ~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~ 442 (815)
.+.|+++ +++++..+.. ++++++.++. ++.+.|.++||.+++|.+ .
T Consensus 277 ~~~L~~~------~g~~~~~~~~-------~~~~~~~~~~---------~~~~~l~~~gi~v~~g~~-~----------- 322 (356)
T 1v72_A 277 AQGLEGL------GGVEVLGGTE-------ANILFCRLDS---------AMIDALLKAGFGFYHDRW-G----------- 322 (356)
T ss_dssp HHHHTTC------TTEEEESCCC-------SSEEEEEECH---------HHHHHHHHTTCBCBCSSS-S-----------
T ss_pred HHHHhhC------CCcEEccCCC-------ccEEEEEcCH---------HHHHHHHhcCeEEecccc-C-----------
Confidence 9999887 6888875543 6777777642 377778889999987641 1
Q ss_pred HHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 443 DITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 443 ~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+++|+++++.++++++++++++|++++.
T Consensus 323 -------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 351 (356)
T 1v72_A 323 -------------------------PNVVRFVTSFATTAEDVDHLLNQVRLAAD 351 (356)
T ss_dssp -------------------------TTEEEEECCTTCCHHHHHHHHHHHHHTC-
T ss_pred -------------------------CCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 26899999999999999999999998754
No 121
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.5e-22 Score=229.21 Aligned_cols=322 Identities=10% Similarity=0.002 Sum_probs=212.0
Q ss_pred cchhhHHHHHHHHhhc-cccCCCChhhhhhhhhhhHHHHHHHHHhHc----C--CCCCceeEEecCCchhhHHHHHhhhc
Q psy16512 73 YSQSQMNQTIEQLKEN-IFSHPHGNSVLSDFCVSEIDQMRTKILQYF----N--TDSDHYSVIFTSGATSAIKTVSEYFE 145 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~-~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~~~iv~t~g~t~al~~~~~al~ 145 (815)
.++.+.+++.+.+... ....+ .... ..++++.+++++ | .++++ |++|+|+++|+.+++.++.
T Consensus 71 ~~~~v~~a~~~~~~~~~~~~Y~-----~~~g----~~~lr~~ia~~l~~~~g~~~~~~~--v~~t~G~~~al~~~~~~l~ 139 (447)
T 3b46_A 71 PPQFAIKEAQKALDIPMVNQYS-----PTRG----RPSLINSLIKLYSPIYNTELKAEN--VTVTTGANEGILSCLMGLL 139 (447)
T ss_dssp CCHHHHHHHHHHTTSGGGGSCC-----CTTC----CHHHHHHHHHHHTTTTTSCCCGGG--EEEESHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCcCCCCCC-----CCCC----CHHHHHHHHHHHHHhcCCCCChhh--EEEeCCHHHHHHHHHHHHc
Confidence 4566777776665431 11111 1112 456777777765 4 34455 9999999999999999997
Q ss_pred cCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch------------hhhcchhhhhhhhhhhhhcCCCccEEEEeccc
Q psy16512 146 FNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD------------DARNMLNEFKESQENVENMRHSNSLFVYPAES 211 (815)
Q Consensus 146 ~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~------------~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~ 211 (815)
++|| |++....|+++.......+... .++++.+ ...+++.+++++ .+++++|++++++
T Consensus 140 -~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-------~~~~~~v~l~~p~ 211 (447)
T 3b46_A 140 -NAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAI-------TSKTKAVIINTPH 211 (447)
T ss_dssp -CTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTC-------CTTEEEEEEESSC
T ss_pred -CCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhh-------ccCCeEEEEeCCC
Confidence 8999 8888888887766554443322 4555432 245666665533 4679999999999
Q ss_pred CCCccccC---hHHHHHHhhccccccccccCCCCeEEEEecccccCC---CCCCCCC-----CCCcEEEEccccccccCC
Q psy16512 212 NFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS---NMLDLKQ-----HQPDFISISFYKMFGYPT 280 (815)
Q Consensus 212 n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~---~~~dl~~-----~~~D~vv~S~~K~~g~p~ 280 (815)
||||.++| +++|.++|+ ++|+++|+|+++.... ....+.. .+.++++.|+||+|+ ++
T Consensus 212 nptG~~~~~~~l~~i~~l~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~-~~ 279 (447)
T 3b46_A 212 NPIGKVFTREELTTLGNICV-----------KHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFA-AT 279 (447)
T ss_dssp TTTCCCCCHHHHHHHHHHHH-----------HTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTT-CT
T ss_pred CCCCcccCHHHHHHHHHHHH-----------HcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcC-Cc
Confidence 99999987 445566666 8999999999987522 1122222 367899999999998 66
Q ss_pred c--ceEEEE-ecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHH--hhhhhH-HH
Q psy16512 281 G--LGALIV-KQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME--KKRKSF-TN 354 (815)
Q Consensus 281 G--~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~--~~~~~~-~~ 354 (815)
| +|++++ ++++++.+.... .....+.+.+...++.++++... .....+ ++
T Consensus 280 G~riG~~~~~~~~l~~~l~~~~------------------------~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~ 335 (447)
T 3b46_A 280 GWRIGWVLSLNAELLSYAAKAH------------------------TRICFASPSPLQEACANSINDALKIGYFEKMRQE 335 (447)
T ss_dssp TSCCEEEECSCHHHHHHHHHHH------------------------HHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred chhhEEEEeCCHHHHHHHHHHH------------------------hhccCCCChHHHHHHHHHHhCCcchHHHHHHHHH
Confidence 8 899999 777765543211 11223556677777777777642 211222 78
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC---CC--------ccCHHHHHHhh-hcCCc
Q psy16512 355 AFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD---GT--------YYGYSEVQNLA-NLKKI 422 (815)
Q Consensus 355 ~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~---~~--------~~~~~~v~~~l-~~~gI 422 (815)
.+++++++.+.|+++ ++++..+.. +.++++.++... .. ..+..++.+.| .++||
T Consensus 336 ~~~~~~~l~~~L~~~-------g~~~~~~~~-------g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV 401 (447)
T 3b46_A 336 YINKFKIFTSIFDEL-------GLPYTAPEG-------TYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGV 401 (447)
T ss_dssp HHHHHHHHHHHHHHH-------TCCEECCSB-------SSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHC-------CCeecCCCe-------eEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCE
Confidence 888999999999887 455554432 567777775420 00 01223466555 57899
Q ss_pred EeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHH
Q psy16512 423 QLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 423 ~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~ 493 (815)
.+.+|..|...... ....+++|+|++. ++++++++++.|.+
T Consensus 402 ~v~pg~~f~~~~~~----------------------------~~~~~~iRls~~~--~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 402 VAIPPTEFYIKEHE----------------------------KAAENLLRFAVCK--DDAYLENAVERLKL 442 (447)
T ss_dssp ECBCGGGGSCGGGG----------------------------GGGTTEEEEECCS--CHHHHHHHHHHGGG
T ss_pred EEECchHhCCCCcc----------------------------CCCCCEEEEEEeC--CHHHHHHHHHHHHH
Confidence 99988654322110 0013789999984 89999999999977
No 122
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.89 E-value=6.2e-23 Score=224.14 Aligned_cols=324 Identities=12% Similarity=0.078 Sum_probs=202.2
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVS 141 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~ 141 (815)
.++|+.+....+++.+.+++.+.... ...+..... ..++++++++++|.+ + +++++|+++|+.+++
T Consensus 5 ~i~~~~~~~~~p~~~~~~a~~~~~~~------~~~y~~~~~----~~~l~~~la~~~g~~--~--~~~~~~gt~a~~~~~ 70 (347)
T 1jg8_A 5 MIDLRSDTVTKPTEEMRKAMAQAEVG------DDVYGEDPT----INELERLAAETFGKE--A--ALFVPSGTMGNQVSI 70 (347)
T ss_dssp CEECSCGGGCCCCHHHHHHHHTCCCC------CGGGTCCHH----HHHHHHHHHHHHTCS--E--EEEESCHHHHHHHHH
T ss_pred EEEeccccCCCCCHHHHHHHhcCCCC------CcccCCChH----HHHHHHHHHHHhCCc--e--EEEecCcHHHHHHHH
Confidence 46777777777667766666432110 011111223 778999999999985 2 788888899999999
Q ss_pred hhhccCCCc-EEEecCCCcchhhHHHHhhccc--eEEcC-chhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCC-cc
Q psy16512 142 EYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ--IYSFS-VDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFS-GT 216 (815)
Q Consensus 142 ~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v~~~-~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t-G~ 216 (815)
.++. ++|| |+++..+|.+.+.....+...| .+.+. .++.++++.++++++.. ....++|++|++++++||| |.
T Consensus 71 ~~~~-~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~i~~~-~~~~~~~~~v~~~~~~npt~G~ 148 (347)
T 1jg8_A 71 MAHT-QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPR-NIHFPRTSLIAIENTHNRSGGR 148 (347)
T ss_dssp HHHC-CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEECEETTEECHHHHHHHSCCS-CTTSCCEEEEEEESSBTTTTSB
T ss_pred HHhc-CCCCEEEEcCcchhhhccccchhhccCeEEEEecCCCCccCHHHHHHHhccc-cccccCceEEEEeccccccCCc
Confidence 8887 8999 8888888877554222333334 33332 23345666666544200 0001268999999999999 99
Q ss_pred ccChHH---HHHHhhccccccccccCCCCeEEEEecccccCC---CCCCCCC--CCCcEEEEccccccccCCcce-EEEE
Q psy16512 217 KYPLSW---CNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS---NMLDLKQ--HQPDFISISFYKMFGYPTGLG-ALIV 287 (815)
Q Consensus 217 ~~~l~~---I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~---~~~dl~~--~~~D~vv~S~~K~~g~p~G~G-~l~~ 287 (815)
++|.++ |.++|+ ++|+++++|+++..+. ...+... ...|.+++|+||++++| +| +++.
T Consensus 149 ~~~~~~l~~i~~~a~-----------~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~--~G~~~~~ 215 (347)
T 1jg8_A 149 VVPLENIKEICTIAK-----------EHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAP--VGSVVVG 215 (347)
T ss_dssp CCCHHHHHHHHHHHH-----------HHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCS--SCEEEEE
T ss_pred cCcHHHHHHHHHHHH-----------HCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCC--ceEEEEc
Confidence 999765 556666 8999999999874421 1122211 25788889999999955 45 4556
Q ss_pred ecccccccCcccccCceEEEEecCCcccccccCccccccCCCC--ChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy16512 288 KQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTV--NYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFY 365 (815)
Q Consensus 288 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~--~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~ 365 (815)
++++++.+..... ...++. +.....+...+++ .....+++..+.++++.+.
T Consensus 216 ~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~ 268 (347)
T 1jg8_A 216 DRDFIERARKARK------------------------MLGGGMRQAGVLAAAGIIALT---KMVDRLKEDHENARFLALK 268 (347)
T ss_dssp CHHHHHHHHHHHH------------------------HHTCCCSSTHHHHHHHHHHHH---HSSTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH------------------------HcCCchhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 6666554422110 001111 1122222223333 2222234445677888888
Q ss_pred HHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHH
Q psy16512 366 FKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDIT 445 (815)
Q Consensus 366 L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~ 445 (815)
|+++ ++++..+ ...++++++.++.. ..+..++.+.|.++||.++++.
T Consensus 269 L~~~-------~~~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~~l~~~gi~v~~~~----------------- 315 (347)
T 1jg8_A 269 LKEI-------GYSVNPE------DVKTNMVILRTDNL---KVNAHGFIEALRNSGVLANAVS----------------- 315 (347)
T ss_dssp HHHH-------TCBCCGG------GCCSSEEEEECTTS---SSCHHHHHHHHHHHTEECEEEE-----------------
T ss_pred HHhc-------CceeccC------CCcceEEEEEcccc---cCCHHHHHHHHHHCCCEEecCC-----------------
Confidence 8776 3333211 12367788877531 1234467888888999987531
Q ss_pred HHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 446 IKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 446 ~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+++|++++.+++++|+++++++|++++.
T Consensus 316 ----------------------~~~iRl~~~~~~~~e~i~~~~~~l~~~l~ 344 (347)
T 1jg8_A 316 ----------------------DTEIRLVTHKDVSRNDIEEALNIFEKLFR 344 (347)
T ss_dssp ----------------------TTEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred ----------------------CCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 26799999999999999999999998764
No 123
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.89 E-value=3.2e-22 Score=225.19 Aligned_cols=303 Identities=11% Similarity=0.052 Sum_probs=199.7
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhH--HHHHhhhccC--C----------Cc-EEEecCCCcchhhHHHHhhcc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAI--KTVSEYFEFN--E----------GS-FIYLTDNHTSVLGMRELVKTN 171 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al--~~~~~al~~~--~----------gd-vv~~~~~h~s~~~~~~~~~~~ 171 (815)
..++|+.+++++++++++ |++|+|+++++ .+++.++. . + || |++..+.|+++....+.++..
T Consensus 80 ~~~lr~~ia~~~~~~~~~--i~~t~G~~~al~~~~~~~~l~-~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~ 156 (427)
T 3ppl_A 80 IVDIRQIWADLLGVPVEQ--VLAGDASSLNIMFDVISWSYI-FGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFE 156 (427)
T ss_dssp CHHHHHHHHHHHTSCGGG--EEECSSCHHHHHHHHHHHHHH-HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHhCCCcce--EEEeCCcHHHHHHHHHHHHHh-ccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCE
Confidence 788999999999999887 99999999999 58888876 4 5 88 888888887765554444332
Q ss_pred c-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEe-cccCCCccccChHHHHHHhhcccccccccc-CCCCeEEEEe
Q psy16512 172 Q-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYP-AESNFSGTKYPLSWCNTVHRNHVFKKHFKC-SRSNCFVLLD 248 (815)
Q Consensus 172 g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~-~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~-~~~gi~vivD 248 (815)
. .++++.++ ++++.++++++ .+++++|++. +++||||.++|.+++.++++ .| +++|+++|+|
T Consensus 157 ~~~v~~~~~g-~d~~~l~~~l~------~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~--------~a~~~~~~~ii~D 221 (427)
T 3ppl_A 157 MISVPMNEDG-PDMDAVEELVK------NPQVKGMWVVPVFSNPTGFTVTEDVAKRLSA--------METAAPDFRVVWD 221 (427)
T ss_dssp EEEEEEETTE-ECHHHHHHHTT------STTEEEEEECCSSCTTTCCCCCHHHHHHHHH--------CCCSSTTCEEEEE
T ss_pred EEEeCCCCCC-CCHHHHHHHHh------cCCCeEEEECCCCCCCCCccCCHHHHHHHHH--------HHhhcCCCEEEEE
Confidence 2 56666544 67777665442 3568888865 89999999999996666665 44 5999999999
Q ss_pred cccccCC------CCCCCC-------CCCCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcc
Q psy16512 249 AATYCGS------NMLDLK-------QHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENF 314 (815)
Q Consensus 249 ~a~~~g~------~~~dl~-------~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~ 314 (815)
++++... .++++. ..+.++++.|+||+++ | -++||++.++++++.+....
T Consensus 222 e~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~G~r~G~~~~~~~l~~~~~~~~--------------- 285 (427)
T 3ppl_A 222 NAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITL-AGAGVSFFLTSAENRKWYTGHA--------------- 285 (427)
T ss_dssp CTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSC-TTSSCEEEECCHHHHHHHHHHH---------------
T ss_pred CCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccC-cCccEEEEEcCHHHHHHHHHHh---------------
Confidence 9986421 111221 3356789999999954 5 24899999887766553221
Q ss_pred cccccCccccccCCCCChhHHHHHHHHHHHH---Hh-hhhhHHHHHHHHHHHHHHHHh-ccccCCCCcEEEcCCCCCCCC
Q psy16512 315 HIKKDGLFEKFEDGTVNYLAIISLKYGFDTM---EK-KRKSFTNAFELSQYTYFYFKQ-LSYSNGQPLVELYHDTDYGES 389 (815)
Q Consensus 315 ~~~~~~~~~~~~~gt~~~~~~~al~~al~~l---~~-~~~~~~~~~~l~~~l~~~L~~-l~~~~~~p~~~l~~~~~~~~~ 389 (815)
.....+.+.....++..+++.. .. +....+++.+.++.+.+.|.+ +. +.+++.+..+..
T Consensus 286 ---------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~---~~~~~~~~~p~~---- 349 (427)
T 3ppl_A 286 ---------GIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLA---EYGVAQWTVPAG---- 349 (427)
T ss_dssp ---------HHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG---GGTCCEECCCSB----
T ss_pred ---------hcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCceEEeCCCc----
Confidence 1112234555555554544431 11 111114445555555555543 10 002466655543
Q ss_pred CcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCce
Q psy16512 390 KYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTG 469 (815)
Q Consensus 390 ~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g 469 (815)
+.++++.++..+ ..++.+.|.++||.+++|..|..... ....+
T Consensus 350 ---g~~~~~~~~~~~-----~~~~~~~l~~~gv~v~~~g~~~~~~~-----------------------------~~~~~ 392 (427)
T 3ppl_A 350 ---GYFISLDVVPGT-----ASRVAELAKEAGIALTGAGSSYPLRQ-----------------------------DPENK 392 (427)
T ss_dssp ---SSCEEEECSTTC-----HHHHHHHHHHTTEECCCTTTTSGGGC-----------------------------CTTSC
T ss_pred ---cEEEEEECCcch-----HHHHHHHHHHCCCEEecCcCcCCCCC-----------------------------CCCCC
Confidence 778888886532 34578888999999998443322100 01148
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 470 SIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 470 ~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
++|+|++.. +++++++++++|.+++.+
T Consensus 393 ~~Ris~~~~-~~~~i~~~~~~l~~~l~~ 419 (427)
T 3ppl_A 393 NLRLAPSLP-PVEELEVAMDGVATCVLL 419 (427)
T ss_dssp EEEECCSSS-CHHHHHHHHHHHHHHHHH
T ss_pred eEEEECCCC-CHHHHHHHHHHHHHHHHH
Confidence 999999765 899999999999988754
No 124
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.89 E-value=1.1e-21 Score=220.52 Aligned_cols=301 Identities=11% Similarity=0.068 Sum_probs=201.9
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHH--HHHhhhccC--C---------Cc-EEEecCCCcchhhHHHHhhccc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIK--TVSEYFEFN--E---------GS-FIYLTDNHTSVLGMRELVKTNQ 172 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~--~~~~al~~~--~---------gd-vv~~~~~h~s~~~~~~~~~~~g 172 (815)
..++|+.+++++++++++ |++|+|+++++. +++.++. . + || |++..+.|+.+.......+...
T Consensus 72 ~~~lr~~ia~~~~~~~~~--i~~t~G~~~al~~~~~~~~l~-~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 148 (423)
T 3ez1_A 72 LPSARALFAGYLDVKAEN--VLVWNNSSLELQGLVLTFALL-HGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFEL 148 (423)
T ss_dssp CHHHHHHHHHHTTSCGGG--EEECSSCHHHHHHHHHHHHHH-TCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEE
T ss_pred hHHHHHHHHHHhCCChhh--EEEeCCcHHHHHHHHHHHHHh-ccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEE
Confidence 678999999999998887 999999999998 8888887 5 6 57 8888888877665554443332
Q ss_pred -eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEE-ecccCCCccccChHHHHHHhhcccccccccc-CCCCeEEEEec
Q psy16512 173 -IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVY-PAESNFSGTKYPLSWCNTVHRNHVFKKHFKC-SRSNCFVLLDA 249 (815)
Q Consensus 173 -~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i-~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~-~~~gi~vivD~ 249 (815)
.++++.+ .++++.++++++ ..+++++|++ ++++||||.++|.+++.++++ .| +++|+++|+|+
T Consensus 149 ~~v~~~~~-g~d~~~l~~~l~-----~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~--------~a~~~~~~~li~De 214 (423)
T 3ez1_A 149 LTVDMQSD-GPDVDAVERLAG-----TDPSVKGILFVPTYSNPGGETISLEKARRLAG--------LQAAAPDFTIFADD 214 (423)
T ss_dssp EEEEEETT-EECHHHHHHHHH-----SCTTEEEEEECSSSCTTTCCCCCHHHHHHHHT--------CCCSSTTCEEEEEC
T ss_pred EeccCCCC-CCCHHHHHHHHh-----hCCCceEEEECCCCCCCCCcCCCHHHHHHHHH--------HHHhccCCEEEEEC
Confidence 5566554 367777766441 1357888875 589999999999997777766 55 59999999999
Q ss_pred ccccCC-------CCCCC-------CCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCccc
Q psy16512 250 ATYCGS-------NMLDL-------KQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFH 315 (815)
Q Consensus 250 a~~~g~-------~~~dl-------~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~ 315 (815)
++.... .+.++ ...+.++++.|+||+++...++|++++++++++.+....
T Consensus 215 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~~~~~~~~~~---------------- 278 (423)
T 3ez1_A 215 AYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSEDNIRWLSKYL---------------- 278 (423)
T ss_dssp TTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECHHHHHHHHHHH----------------
T ss_pred CcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCHHHHHHHHHHH----------------
Confidence 987321 11111 133567899999997442235899999988776553221
Q ss_pred ccccCccccccCCCCChhHHHHHHHHHHH-H----HhhhhhHHHHHHHHHHHHHHH----HhccccCCCC-cEEEcCCCC
Q psy16512 316 IKKDGLFEKFEDGTVNYLAIISLKYGFDT-M----EKKRKSFTNAFELSQYTYFYF----KQLSYSNGQP-LVELYHDTD 385 (815)
Q Consensus 316 ~~~~~~~~~~~~gt~~~~~~~al~~al~~-l----~~~~~~~~~~~~l~~~l~~~L----~~l~~~~~~p-~~~l~~~~~ 385 (815)
.....+.+.....++..+++. . ..+....+.+.+.++.+.+.| ..+ + ++++..+..
T Consensus 279 --------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~------~~~~~~~~p~~ 344 (423)
T 3ez1_A 279 --------GAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEG------GEYATWTLPKG 344 (423)
T ss_dssp --------HHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT------TSSEEECCCSB
T ss_pred --------hhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC------CCceEEeCCCc
Confidence 111234555555555555554 1 111111133334444444444 333 3 377765543
Q ss_pred CCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEecc-CccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccC
Q psy16512 386 YGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRT-GCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIID 464 (815)
Q Consensus 386 ~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~ 464 (815)
+.++++.++..+ ...+.+.|.++||.+++ |.+|..+.
T Consensus 345 -------g~~~~~~~~~~~-----~~~~~~~l~~~gv~v~~~g~~~~~~~------------------------------ 382 (423)
T 3ez1_A 345 -------GYFISLDTAEPV-----ADRVVKLAEAAGVSLTPAGATYPAGQ------------------------------ 382 (423)
T ss_dssp -------SSCEEEEESSSC-----HHHHHHHHHHTTEECCCTTTTSSTTC------------------------------
T ss_pred -------cEEEEEECCCCc-----HHHHHHHHHHCCcEEecCcccccCCC------------------------------
Confidence 678888886532 34588889999999998 65553210
Q ss_pred CCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 465 GKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 465 ~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
....+++|||++.. +++++++++++|.+++.+
T Consensus 383 ~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~ 414 (423)
T 3ez1_A 383 DPHNRNLRLAPTRP-PVEEVRTAMQVVAACIRL 414 (423)
T ss_dssp CSSSCEEEECCSSS-CHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHH
Confidence 01248999999866 899999999999998754
No 125
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.89 E-value=5.7e-22 Score=227.01 Aligned_cols=319 Identities=11% Similarity=0.031 Sum_probs=207.5
Q ss_pred HHHHHHHHHhHcCCCCC-------ceeEEecCCchhhHHHHHhhhccC--C------C---------c--EEEecCCCcc
Q psy16512 107 IDQMRTKILQYFNTDSD-------HYSVIFTSGATSAIKTVSEYFEFN--E------G---------S--FIYLTDNHTS 160 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~-------~~~iv~t~g~t~al~~~~~al~~~--~------g---------d--vv~~~~~h~s 160 (815)
.+++++++++++|++.+ ...+++|+|+|+|+.+++.++... + | + ++++...|++
T Consensus 115 e~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s 194 (486)
T 1js3_A 115 ETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSS 194 (486)
T ss_dssp HHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHH
T ss_pred HHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHH
Confidence 56788999999999753 124899999999999888776411 0 2 4 6678889998
Q ss_pred hhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccC
Q psy16512 161 VLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCS 239 (815)
Q Consensus 161 ~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~ 239 (815)
+.......+... .++++.++.++++.++++|+.-. .....+.+|++++++|+||.+.|+++|+++|+
T Consensus 195 ~~~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~-~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~----------- 262 (486)
T 1js3_A 195 VERAGLIGGVKLKAIPSDGKFAMRASALQEALERDK-AAGLIPFFVVATLGTTSCCSFDNLLEVGPICH----------- 262 (486)
T ss_dssp HHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHH-HTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH-----------
T ss_pred HHHHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHH-hCCCCceEEEEeCCCCCCCCCCCHHHHHHHHH-----------
Confidence 876666554332 66666666788888888664110 00111359999999999999999999999999
Q ss_pred CCCeEEEEecccccCCCCC-CCCC-----CCCcEEEEccccccccCCcceEEEEeccc--ccccC--cccccCceEEEEe
Q psy16512 240 RSNCFVLLDAATYCGSNML-DLKQ-----HQPDFISISFYKMFGYPTGLGALIVKQKS--AHVLN--KTFYGGGTVKISM 309 (815)
Q Consensus 240 ~~gi~vivD~a~~~g~~~~-dl~~-----~~~D~vv~S~~K~~g~p~G~G~l~~~~~~--~~~l~--~~~~g~~~~~~~~ 309 (815)
++|+++|+|++++.+.... +... .++|++++|+||+++.|.|+|+++++++. .+.+. +.+..+..... .
T Consensus 263 ~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~-~ 341 (486)
T 1js3_A 263 EEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGS-G 341 (486)
T ss_dssp HTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------C-C
T ss_pred HcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchhhCCCcccc-c
Confidence 8999999999998765432 2211 25899999999999988899999998753 23332 22221111000 0
Q ss_pred cCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCC
Q psy16512 310 ANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK--SFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYG 387 (815)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~--~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~ 387 (815)
...++. ....+.+. .+ ..+++.+++..+...+. ..++..++++++.+.|+++ |+++++.+.
T Consensus 342 ~~~~~~------~~~~~~~r-r~-~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~------~~~~~~~~~--- 404 (486)
T 1js3_A 342 LITDYR------HWQLPLGR-RF-RSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQD------PRFEVCAEV--- 404 (486)
T ss_dssp SCCCGG------GSSSCSCC-CC-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------TTEEECSCC---
T ss_pred CCCCcc------ccCCCCCC-ch-hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC------CCeEEeCCC---
Confidence 000000 00011111 11 23445555555433221 2388889999999999998 799998643
Q ss_pred CCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCC
Q psy16512 388 ESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKP 467 (815)
Q Consensus 388 ~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~ 467 (815)
..++++|.+...+ .++ .++.+.|.++|+.+..+.. ++ +
T Consensus 405 ----~~~~v~f~~~~~~--~~~-~~l~~~L~~~g~~~~~~~~---------~~------------------------~-- 442 (486)
T 1js3_A 405 ----TLGLVCFRLKGSD--GLN-EALLERINSARKIHLVPCR---------LR------------------------G-- 442 (486)
T ss_dssp ----CSSEEEEEESSCH--HHH-HHHHHHHHHHTSCBCEEEE---------ET------------------------T--
T ss_pred ----ceeEEEEEecChH--HHH-HHHHHHHHhcCCEEEEEEE---------EC------------------------C--
Confidence 2678999876321 111 3467777777865432211 00 0
Q ss_pred ceEEEEec-cCCCCHHHHHHHHHHHHHHHhh
Q psy16512 468 TGSIRISY-GHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 468 ~g~iRvs~-g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+++|+++ +.++|++||++++++|++++.+
T Consensus 443 ~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 473 (486)
T 1js3_A 443 QFVLRFAICSRKVESGHVRLAWEHIRGLAAE 473 (486)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 37999997 6678999999999999987643
No 126
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.89 E-value=3.9e-22 Score=221.72 Aligned_cols=303 Identities=11% Similarity=0.018 Sum_probs=205.9
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHH-HHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMR-ELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~-~~~~~~g--~v~~~~~~~~ 182 (815)
.+++++++++++|.+ + +++++|+++|+.+++.++. ++|| ||++...|+++.... ..+...| ...++.+
T Consensus 68 ~~~l~~~la~~~g~~--~--~~~~~sGt~A~~~al~~~~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~--- 139 (392)
T 3qhx_A 68 RTALEAALAAVEDAA--F--GRAFSSGMAAADCALRAML-RPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALA--- 139 (392)
T ss_dssp HHHHHHHHHHHTTCS--E--EEEESSHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTT---
T ss_pred HHHHHHHHHHHhCCC--c--EEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCC---
Confidence 889999999999986 2 7888899999999999886 8998 999999998776543 4445556 3444432
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .+.+++++|++++++||||.+.|+++|.++|+ ++|+++|+|++++.+... +...
T Consensus 140 d~~~l~~-------~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~-----------~~g~~li~D~~~~~~~~~-~~~~ 200 (392)
T 3qhx_A 140 DLDAVRA-------AIRPTTRLIWVETPTNPLLSIADIAGIAQLGA-----------DSSAKVLVDNTFASPALQ-QPLS 200 (392)
T ss_dssp CHHHHHH-------HCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH-----------HHTCEEEEECTTTCTTTC-CGGG
T ss_pred CHHHHHH-------hhCCCCeEEEEECCCCCCcEEecHHHHHHHHH-----------HcCCEEEEECCCcccccC-ChHH
Confidence 4455554 33468999999999999999999999999999 899999999999876432 2234
Q ss_pred CCCcEEEEccccccccCCc---ceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG---LGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISL 338 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G---~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al 338 (815)
+++|+++.|+||++| ++| .|+++.++ ++.+.+.... .....+.+....+++
T Consensus 201 ~~~di~~~S~sK~lg-~~g~~~~G~v~~~~~~~~~~l~~~~------------------------~~~g~~~~~~~~~~~ 255 (392)
T 3qhx_A 201 LGADVVLHSTTKYIG-GHSDVVGGALVTNDEELDQSFAFLQ------------------------NGAGAVPGPFDAYLT 255 (392)
T ss_dssp GTCSEEEEETTTTTT-CSSCCCCEEEEESCHHHHHHHHHHH------------------------HHHCCCCCHHHHHHH
T ss_pred hCCcEEEEcCccccC-CCCCceEEEEEECcHHHHHHHHHHH------------------------HhcCCCCCHHHHHHH
Confidence 579999999999999 445 78888874 5544432211 111223444444444
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCCC---------CcccceEEEEEecCCCCcc
Q psy16512 339 KYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGES---------KYQGNIVNFNLLHKDGTYY 408 (815)
Q Consensus 339 ~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~~---------~~~~~i~~f~~~~~~~~~~ 408 (815)
..+++.+. ..+++..+.++++.+.|.+. |.+. +..|...+.+ ...+++++|.+++.. .
T Consensus 256 ~~~l~~l~---~~~~~~~~~~~~l~~~L~~~------~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~---~ 323 (392)
T 3qhx_A 256 MRGLKTLV---LRMQRHSENAAAVAEFLAEH------PAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGR---T 323 (392)
T ss_dssp HHHHTTHH---HHHHHHHHHHHHHHHHHHTC------TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCH---H
T ss_pred HhhhhHHH---HHHHHHHHHHHHHHHHHhcC------CCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcH---H
Confidence 44444322 23466777788888888876 5553 3322210000 224789999997521 1
Q ss_pred CHHHHHHhhhcCCcEeccCccCCch---hhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHH
Q psy16512 409 GYSEVQNLANLKKIQLRTGCHCNPG---SCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVK 485 (815)
Q Consensus 409 ~~~~v~~~l~~~gI~v~~g~~~~~~---~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~ 485 (815)
....+...|...+|.++.|..|+.. ....+.++..+ ..|..++.||+|+|.++++++++
T Consensus 324 ~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~------------------~~g~~~~~iRlSvg~e~~~~~i~ 385 (392)
T 3qhx_A 324 AAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGS------------------QLEVPDDLVRLSVGIEDVADLLD 385 (392)
T ss_dssp HHHHHHHHCSSSEECSCCCCSSCEEECGGGTSCGGGBTT------------------BCCCCTTEEEEECCSSCHHHHHH
T ss_pred HHHHHHHhCCCceECCCCCCCCceeeCcccccccccCHH------------------HcCCCCCeEEEEeccCCHHHHHH
Confidence 1234677788889999999876531 11111111100 12455689999999999999898
Q ss_pred HHHHHH
Q psy16512 486 YFLSFL 491 (815)
Q Consensus 486 ~lv~~L 491 (815)
.+.++|
T Consensus 386 ~l~~al 391 (392)
T 3qhx_A 386 DLKQAL 391 (392)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888876
No 127
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.89 E-value=2.6e-22 Score=218.31 Aligned_cols=303 Identities=17% Similarity=0.200 Sum_probs=207.8
Q ss_pred hhhhhhhhccc-ccchhhHHHHHHHHhh-ccccCCCChhhhhhhhhhhHHHHHHHHHhHcC---CCCCceeEEecCCchh
Q psy16512 61 DICYLDYTGAG-VYSQSQMNQTIEQLKE-NIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN---TDSDHYSVIFTSGATS 135 (815)
Q Consensus 61 ~~iyLd~a~~~-~~p~~v~~al~~~l~~-~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g---~~~~~~~iv~t~g~t~ 135 (815)
..++|+.+... ..++.+.+++.+.+.. .....+. .. ..++|+.++++++ +++++ |++|+|+++
T Consensus 20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~----~~~lr~~la~~~~~~~~~~~~--v~~~~G~~~ 87 (335)
T 1uu1_A 20 DKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYD------SP----DEELIEKILSYLDTDFLSKNN--VSVGNGADE 87 (335)
T ss_dssp CSEEESSCCCSSCCCHHHHHHHHHTCCGGGGGSCCC------SS----CHHHHHHHHHHHTCSSCCGGG--EEEESSHHH
T ss_pred cceECCCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC------Cc----hHHHHHHHHHHcCCCCCCHHH--EEEcCChHH
Confidence 45778877664 3567788877665521 1111111 12 7789999999999 77776 999999999
Q ss_pred hHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCC
Q psy16512 136 AIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNF 213 (815)
Q Consensus 136 al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~ 213 (815)
|+.+++.++ || |++. +.|+++....+..+... .++.+.+..++++.+ +++++|++++++||
T Consensus 88 al~~~~~~~----gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l------------~~~~~v~l~~p~np 150 (335)
T 1uu1_A 88 IIYVMMLMF----DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLTKDLRIPEVNV------------GEGDVVFIPNPNNP 150 (335)
T ss_dssp HHHHHHHHS----SEEEECS-SSCHHHHHHHHHHTCEEEECCCCTTSCCCCCCC------------CTTEEEEEESSCTT
T ss_pred HHHHHHHHh----CCcEEEC-CCcHHHHHHHHHcCCeEEEeccCCCCCCCHHHc------------CCCCEEEEeCCCCC
Confidence 999999988 78 7777 77776654433322211 333333223333332 35899999999999
Q ss_pred CccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC--CCCC-CCCCCCcEEEEccccccccCCc--ceEEEEe
Q psy16512 214 SGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS--NMLD-LKQHQPDFISISFYKMFGYPTG--LGALIVK 288 (815)
Q Consensus 214 tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~--~~~d-l~~~~~D~vv~S~~K~~g~p~G--~G~l~~~ 288 (815)
||.++|.+++.++++ ..| ++|+|++++... ..++ +...+.++++.|+||+|| ++| +|+++++
T Consensus 151 tG~~~~~~~l~~l~~-----------~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~ 217 (335)
T 1uu1_A 151 TGHVFEREEIERILK-----------TGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFS-LAAQRVGYVVAS 217 (335)
T ss_dssp TCCCCCHHHHHHHHH-----------TTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTTT-CGGGCCEEEEEC
T ss_pred CCCCCCHHHHHHHHH-----------hCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhcC-CcccCeEEEEeC
Confidence 999999999999999 558 899999987321 1122 233456799999999998 557 7999998
Q ss_pred cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q psy16512 289 QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQ 368 (815)
Q Consensus 289 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~ 368 (815)
+++++.+.+.. ...+.|..+..++.++++.........++..++++++.+.|++
T Consensus 218 ~~~~~~l~~~~--------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~ 271 (335)
T 1uu1_A 218 EKFIDAYNRVR--------------------------LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALRE 271 (335)
T ss_dssp HHHHHHHHHHS--------------------------CTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--------------------------CCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87765553211 1136677777777777765322222237788889999999987
Q ss_pred ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHH
Q psy16512 369 LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKF 448 (815)
Q Consensus 369 l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~ 448 (815)
+ ++++. +. .++++++.++. .+..++.+.|.++||.++++
T Consensus 272 ~-------g~~~~-~~-------~~~~~~~~~~~-----~~~~~~~~~l~~~gi~v~~~--------------------- 310 (335)
T 1uu1_A 272 M-------GYRIT-DS-------RGNFVFVFMEK-----EEKERLLEHLRTKNVAVRSF--------------------- 310 (335)
T ss_dssp H-------TCCBC-CC-------CSSEEEEECCT-----HHHHHHHHHHHHHTEEEEEE---------------------
T ss_pred C-------CcEEc-CC-------CCeEEEEECCC-----CCHHHHHHHHHHCCEEEEEC---------------------
Confidence 6 34433 22 25677777653 12335777788889998751
Q ss_pred HhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 449 HFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 449 ~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
.+++|+|++ +.+|+++++++|+++
T Consensus 311 -------------------~~~iRis~~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 311 -------------------REGVRITIG---KREENDMILRELEVF 334 (335)
T ss_dssp -------------------TTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred -------------------CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 268999997 578999999998753
No 128
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.89 E-value=1.2e-22 Score=226.59 Aligned_cols=340 Identities=12% Similarity=0.094 Sum_probs=225.5
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhc-cccCCCCh-----hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhh
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKEN-IFSHPHGN-----SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSA 136 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~-~~~np~s~-----~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~a 136 (815)
.+++..+..+.++.+.+++.+.+... ..+++++. ...... .+.+|+++++++|++++. +++++| ++|
T Consensus 25 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~r~~la~~~g~~~~~--i~~~sG-t~a 97 (405)
T 2vi8_A 25 KIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIV----EELARERAKQLFGAEHAN--VQPHSG-AQA 97 (405)
T ss_dssp SEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHH----HHHHHHHHHHHHTCSEEE--CCCSSH-HHH
T ss_pred ceeeccCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHH----HHHHHHHHHHHhCCCceE--EEecCc-HHH
Confidence 34555556666888888887765421 22334322 111222 345889999999987542 334555 999
Q ss_pred HHHHHhhhccCCCc-EEEecCCCcchhh-HH--HHhhc--cc-eEEcC-chhhhcchhhhhhhhhhhhhcCCCccEEEEe
Q psy16512 137 IKTVSEYFEFNEGS-FIYLTDNHTSVLG-MR--ELVKT--NQ-IYSFS-VDDARNMLNEFKESQENVENMRHSNSLFVYP 208 (815)
Q Consensus 137 l~~~~~al~~~~gd-vv~~~~~h~s~~~-~~--~~~~~--~g-~v~~~-~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~ 208 (815)
+.+++.++. ++|| |+++...|+++.. +. ...+. .. .++++ .+...+++.++++++ ..++++|+++
T Consensus 98 ~~~a~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~------~~~~~~v~~~ 170 (405)
T 2vi8_A 98 NMAVYFTVL-EHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKAR------LHRPKLIVAA 170 (405)
T ss_dssp HHHHHHHHC-CTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHH------HHCCSEEEEC
T ss_pred HHHHHHHhc-CCCCEEEEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHH------hcCCeEEEEe
Confidence 999999996 8999 8888888888753 21 12221 11 33333 234567777766443 1157888874
Q ss_pred cccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCC---CCcEEEEccccccccCCcceEE
Q psy16512 209 AESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQH---QPDFISISFYKMFGYPTGLGAL 285 (815)
Q Consensus 209 ~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~---~~D~vv~S~~K~~g~p~G~G~l 285 (815)
++| .|...++++|.++|+ ++|+++|+|++++.+..+.+.... .+|++++|+||+|++|.| |++
T Consensus 171 -~~~-~~~~~~l~~i~~l~~-----------~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~ 236 (405)
T 2vi8_A 171 -AAA-YPRIIDFAKFREIAD-----------EVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG-GMI 236 (405)
T ss_dssp -CSS-CCSCCCHHHHHHHHH-----------HHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC-EEE
T ss_pred -CCC-CCccCCHHHHHHHHH-----------HcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCC-eEE
Confidence 333 367779999999999 899999999998865322222111 589999999999987888 999
Q ss_pred EEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh-hh-HHHHHHHHHHHH
Q psy16512 286 IVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-KS-FTNAFELSQYTY 363 (815)
Q Consensus 286 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-~~-~~~~~~l~~~l~ 363 (815)
++++++.+.+.+.. ..+..++++...+.++.++++.+...+ .. .++..++++++.
T Consensus 237 ~~~~~~~~~l~~~~-----------------------~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~ 293 (405)
T 2vi8_A 237 LCQEQFAKQIDKAI-----------------------FPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLA 293 (405)
T ss_dssp EECHHHHHHHHHHH-----------------------TTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred EEcHHHHHHHHhhh-----------------------cccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 99977765553221 012345677778888778887765322 22 388899999999
Q ss_pred HHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCH
Q psy16512 364 FYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSD 443 (815)
Q Consensus 364 ~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~ 443 (815)
+.|+++ +++++.+.. .++++.+.++... .+..++.+.|.++||.+++|..+.. . .+
T Consensus 294 ~~L~~~-------g~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~g~~~~~--~---~~--- 349 (405)
T 2vi8_A 294 SALQNE-------GFTLVSGGT------DNHLLLVDLRPQQ---LTGKTAEKVLDEVGITVNKNTIPYD--P---ES--- 349 (405)
T ss_dssp HHHHHT-------TCEEGGGSC------SSSEEEEECGGGT---CCHHHHHHHHHHHTEECEEECCTTC--S---SC---
T ss_pred HHHHhC-------CCeEecCCC------CceEEEEEccCCC---CCHHHHHHHHHHcCceeccCcCccc--c---CC---
Confidence 999887 577775421 2678888876321 2344688888999999998763210 0 00
Q ss_pred HHHHHHhhcCCccCCcccccCCCCceEEEEeccCC----CCHHHHHHHHHHHHHHHhhc
Q psy16512 444 ITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA----SNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 444 ~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~----~t~edi~~lv~~L~~~~~~~ 498 (815)
....+++|+|++.+ .+++|+++++++|++++.+-
T Consensus 350 ---------------------~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~ 387 (405)
T 2vi8_A 350 ---------------------PFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV 387 (405)
T ss_dssp ---------------------TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred ---------------------CCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhcc
Confidence 00136799999973 57999999999999987543
No 129
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.88 E-value=1.4e-22 Score=228.23 Aligned_cols=299 Identities=13% Similarity=0.093 Sum_probs=200.1
Q ss_pred HHHHHHHHHhHcC--------CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----e
Q psy16512 107 IDQMRTKILQYFN--------TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----I 173 (815)
Q Consensus 107 ~~~~r~~la~~~g--------~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~ 173 (815)
..++++.++++++ +++++ |++|+|+++++.+++.++. ++|| |++....|+++... .+...| .
T Consensus 85 ~~~lr~~la~~~~~~~g~~~~~~~~~--i~~~~G~~~ai~~~~~~~~-~~gd~Vl~~~p~y~~~~~~--~~~~~g~~~~~ 159 (428)
T 1iay_A 85 LPEFRKAIAKFMEKTRGGRVRFDPER--VVMAGGATGANETIIFCLA-DPGDAFLVPSPYYPAFNRD--LRWRTGVQLIP 159 (428)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCCCTTS--CEEEEHHHHHHHHHHHHHC-CTTCEEEEESSCCTTHHHH--TTTTTCCEEEE
T ss_pred cHHHHHHHHHHHHHhcCCCCCCChhh--EEEccChHHHHHHHHHHhC-CCCCeEEEccCCCcchHHH--HHHhcCCEEEE
Confidence 5678888888876 66776 9999999999999999997 8998 88988888776432 222334 3
Q ss_pred EEcCch-h-hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC---hHHHHHHhhccccccccccCCCCeEEEEe
Q psy16512 174 YSFSVD-D-ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLD 248 (815)
Q Consensus 174 v~~~~~-~-~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD 248 (815)
++.+.+ + .++++.++++++... ...+++++|++++++||||.++| +++|.++|+ ++|+++|+|
T Consensus 160 v~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-----------~~~~~li~D 227 (428)
T 1iay_A 160 IHCESSNNFKITSKAVKEAYENAQ-KSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTN-----------QHNIHLVCD 227 (428)
T ss_dssp ECCCTTTTTCCCHHHHHHHHHHHH-HTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHH-----------TTTCEEEEE
T ss_pred eecCCccCCcCCHHHHHHHHHHHH-hcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHH-----------HCCeEEEEe
Confidence 444432 1 356666666543110 01246899999999999999999 666777777 899999999
Q ss_pred cccccCC----CCCCCCC---------CCCc--EEEEccccccccCCc--ceEEEE-ecccccccCcccccCceEEEEec
Q psy16512 249 AATYCGS----NMLDLKQ---------HQPD--FISISFYKMFGYPTG--LGALIV-KQKSAHVLNKTFYGGGTVKISMA 310 (815)
Q Consensus 249 ~a~~~g~----~~~dl~~---------~~~D--~vv~S~~K~~g~p~G--~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~ 310 (815)
++++... ...++.. +++| +++.|+||+|| ++| +|++++ ++++++.++..
T Consensus 228 ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g-~~Glr~G~~~~~~~~~~~~~~~~------------ 294 (428)
T 1iay_A 228 EIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMG-LPGFRVGIIYSFNDDVVNCARKM------------ 294 (428)
T ss_dssp CTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSS-CGGGCEEEEEESCHHHHHHHHHH------------
T ss_pred ccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcC-CCCceEEEEEeCCHHHHHHHHHH------------
Confidence 9987532 1112111 1257 88999999998 557 599999 45555544211
Q ss_pred CCcccccccCccccccCCCCChhHHHHHHHHHHHHH---hhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCC
Q psy16512 311 NENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME---KKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDY 386 (815)
Q Consensus 311 ~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~---~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~ 386 (815)
...++.+.++..++..+++... ...... +++.++++++.+.|+++ +++++.+.
T Consensus 295 --------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~-- 351 (428)
T 1iay_A 295 --------------SSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-------GIKCLKNN-- 351 (428)
T ss_dssp --------------HTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TCCBCCCS--
T ss_pred --------------HhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCcccCCC--
Confidence 0112455666666666665422 111222 77888899999999886 45554332
Q ss_pred CCCCcccceEEEEEecCCC-Cc-cCHHHHHHhhhc-CCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCccccc
Q psy16512 387 GESKYQGNIVNFNLLHKDG-TY-YGYSEVQNLANL-KKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDII 463 (815)
Q Consensus 387 ~~~~~~~~i~~f~~~~~~~-~~-~~~~~v~~~l~~-~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~ 463 (815)
.+.++++.++.... .. ....++.+.|.+ +||.+++|..|...
T Consensus 352 -----~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~------------------------------ 396 (428)
T 1iay_A 352 -----AGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQ------------------------------ 396 (428)
T ss_dssp -----SSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCS------------------------------
T ss_pred -----eeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCC------------------------------
Confidence 26778888764210 00 012246666655 59999987543211
Q ss_pred CCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 464 DGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 464 ~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
..+++||+++ ..+++++++++++|++++.+
T Consensus 397 ---~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 397 ---EPGWFRVCFA-NMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp ---SSSEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred ---CCCEEEEEEe-cCCHHHHHHHHHHHHHHHhc
Confidence 1378999999 57999999999999997643
No 130
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.88 E-value=9.9e-22 Score=216.96 Aligned_cols=317 Identities=15% Similarity=0.144 Sum_probs=210.6
Q ss_pred hhhhhhhhcccc------cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGAGV------YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~~~------~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|.....+ .++.+.+++.+.+... .++...+. ... ..++++++++++|+ +++ +++|+|++
T Consensus 27 g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~--~~~~~~y~-~~~----~~~l~~~la~~~g~-~~~--v~~~~g~t 96 (375)
T 2eh6_A 27 GKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKL--LHVSNLYE-NPW----QEELAHKLVKHFWT-EGK--VFFANSGT 96 (375)
T ss_dssp CCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHC--SCCCTTBC-CHH----HHHHHHHHHHTSSS-CEE--EEEESSHH
T ss_pred CCEEEEcCCcccccccCCCCHHHHHHHHHHHHhc--cccCcccC-CHH----HHHHHHHHHhhcCC-CCe--EEEeCchH
Confidence 356667654332 5677888887766432 23222221 223 67899999999998 344 99999999
Q ss_pred hhHHHHHhhh--cc---CCC-c-EEEecCCCcchhh-HHHHhhcc----ceEEcCchh----hhcchhhhhhhhhhhhhc
Q psy16512 135 SAIKTVSEYF--EF---NEG-S-FIYLTDNHTSVLG-MRELVKTN----QIYSFSVDD----ARNMLNEFKESQENVENM 198 (815)
Q Consensus 135 ~al~~~~~al--~~---~~g-d-vv~~~~~h~s~~~-~~~~~~~~----g~v~~~~~~----~~~~~~~~~~l~~~~~~~ 198 (815)
+|+.+++.++ .. ++| | |++....|+.... +....... +..+...+. ..+++.+++ .+
T Consensus 97 ~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~-------~l 169 (375)
T 2eh6_A 97 ESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYK-------LL 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTTCHHHHHT-------TC
T ss_pred HHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCCchHHHHHH-------Hh
Confidence 9999998753 12 467 7 8888877655433 33322111 111111111 124445544 33
Q ss_pred CCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC--CCCCCCC--CcEEE
Q psy16512 199 RHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM--LDLKQHQ--PDFIS 269 (815)
Q Consensus 199 ~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~--~dl~~~~--~D~vv 269 (815)
.+++++|++++++||||.+.| +++|.++|+ ++|+++|+|++++ ++... .++..++ +|++
T Consensus 170 ~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~- 237 (375)
T 2eh6_A 170 DEETAGIIIEVIQGEGGVNEASEDFLSKLQEICK-----------EKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVI- 237 (375)
T ss_dssp CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHH-----------HHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE-
T ss_pred cCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHH-----------HhCCEEEEeccccCCCCCCcchhhhhcCCCCCEE-
Confidence 467999999999999999988 888999998 8999999999998 54332 2333444 8877
Q ss_pred EccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh
Q psy16512 270 ISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR 349 (815)
Q Consensus 270 ~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~ 349 (815)
|++|+++++.++|++++++++++.+++...+ ... ..+.....++.++++.+.
T Consensus 238 -s~SK~~~~g~~~G~~~~~~~~~~~~~~~~~~-----------------------~~~-~~~~~~~~~~~~~l~~~~--- 289 (375)
T 2eh6_A 238 -ALAKGLGGGVPIGAILAREEVAQSFTPGSHG-----------------------STF-GGNPLACRAGTVVVDEVE--- 289 (375)
T ss_dssp -EECGGGGTTSCCEEEEEEHHHHTTCCTTSCC-----------------------CSS-TTCHHHHHHHHHHHHHHH---
T ss_pred -EEcccccCCCCeEEEEEcHHHHhhhcCCCCC-----------------------CCC-CCCHHHHHHHHHHHHHHH---
Confidence 5559998555699999998877666442111 111 234555555556666654
Q ss_pred hhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCcc
Q psy16512 350 KSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCH 429 (815)
Q Consensus 350 ~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~ 429 (815)
...++.+++++++.+.|+++ +. ... ...++++++.++. +. .++.+.|.++||.++++.
T Consensus 290 ~~~~~~~~~~~~l~~~L~~~------~~-~~~--------~~~g~~~~~~~~~-~~-----~~~~~~l~~~gi~~~~~~- 347 (375)
T 2eh6_A 290 KLLPHVREVGNYFKEKLKEL------GK-GKV--------KGRGLMLGLELER-EC-----KDYVLKALEKGLLINCTA- 347 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHT------TS-SEE--------EEETTEEEEECSS-CC-----HHHHHHHHHTTEECEEET-
T ss_pred HHHHHHHHHHHHHHHHHHHH------hc-CCc--------eEEEEEEEEEEcC-cH-----HHHHHHHHHCCCEEecCC-
Confidence 23388889999999999887 22 111 1236788887753 22 247777878999987531
Q ss_pred CCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 430 CNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 430 ~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
.+++|++++..++++|+++++++|+++
T Consensus 348 --------------------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 348 --------------------------------------GKVLRFLPPLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp --------------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred --------------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 268999999889999999999999875
No 131
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.88 E-value=8.6e-22 Score=226.01 Aligned_cols=336 Identities=13% Similarity=0.053 Sum_probs=217.7
Q ss_pred ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC------CCCCceeEEecCCchhhHHHHHhhhc
Q psy16512 72 VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN------TDSDHYSVIFTSGATSAIKTVSEYFE 145 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g------~~~~~~~iv~t~g~t~al~~~~~al~ 145 (815)
..|..++++..+.+.... +.....+..... ..++|+.++++++ +++++ |++|+|+++|+.+++.++.
T Consensus 106 ~~p~~~~~~a~~~l~~~~-~~~~~~Y~~~~G----~~~lr~~ia~~~~~~~g~~~~~~~--i~~t~G~~~al~~~~~~l~ 178 (500)
T 3tcm_A 106 LFSADSISRAKQILAMIP-GRATGAYSHSQG----IHGLRDAIASGIASRDGFPANADD--IFLTDGASPGVHLMMQLLI 178 (500)
T ss_dssp HSCHHHHHHHHHHHTTST-TSCSSSCCCTTC----CHHHHHHHHHHHHHHHSSCCCGGG--EEEESSSHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHcCC-CCcCCCcCCCcC----hHHHHHHHHHHHHhhcCCCCCccc--EEEcCCHHHHHHHHHHHHc
Confidence 356667777655554311 101111222233 5667777777763 56666 9999999999999999986
Q ss_pred cCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChH
Q psy16512 146 FNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLS 221 (815)
Q Consensus 146 ~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~ 221 (815)
..+|| |+++.+.|+++......++... .++++.+. .++++.++++|+... ....++++|++++++||||.+++.+
T Consensus 179 ~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~k~ivl~~p~NPtG~~~s~~ 257 (500)
T 3tcm_A 179 RNEKDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDAR-SRGINVRALVVINPGNPTGQVLAEE 257 (500)
T ss_dssp CSTTEEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHH-HTTCEEEEEEEESSCTTTCCCCCHH
T ss_pred CCCCCEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHH-hcCCCceEEEEECCCCCCcccCCHH
Confidence 46898 9999989988766655544333 56666543 567788877664211 1123689999999999999999977
Q ss_pred HHHHHhhccccccccccCCCCeEEEEecccccCCC-----CCCCC---------CCCC-cEEEEcccccc-ccCCc--ce
Q psy16512 222 WCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-----MLDLK---------QHQP-DFISISFYKMF-GYPTG--LG 283 (815)
Q Consensus 222 ~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-----~~dl~---------~~~~-D~vv~S~~K~~-g~p~G--~G 283 (815)
++.++++ +|+++|+++|+|+++..... ..++. .... .+++.|+||.| | ++| +|
T Consensus 258 ~l~~i~~--------la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~G~R~G 328 (500)
T 3tcm_A 258 NQYDIVK--------FCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYG-ECGKRGG 328 (500)
T ss_dssp HHHHHHH--------HHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTC-CGGGCCE
T ss_pred HHHHHHH--------HHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCC-CCccceE
Confidence 7666644 23389999999999765321 11110 1112 26677999998 6 557 79
Q ss_pred EEEE---ecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHH-----------HHHhhh
Q psy16512 284 ALIV---KQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFD-----------TMEKKR 349 (815)
Q Consensus 284 ~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~-----------~l~~~~ 349 (815)
|+++ ++++++.+.... ....+++..+..++..+++ +.....
T Consensus 329 ~~~~~~~~~~~~~~l~~~~-------------------------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 383 (500)
T 3tcm_A 329 YFEITGFSAPVREQIYKIA-------------------------SVNLCSNITGQILASLVMNPPKASDESYASYKAEKD 383 (500)
T ss_dssp EEEEESCCTTHHHHHHHHH-------------------------HTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHH-------------------------hcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHH
Confidence 9998 677665543211 1123566777777766664 222222
Q ss_pred hhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC-------ccCHH--HHHHhhhcC
Q psy16512 350 KSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT-------YYGYS--EVQNLANLK 420 (815)
Q Consensus 350 ~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~-------~~~~~--~v~~~l~~~ 420 (815)
...++++++++++.+.|+++ |++.+..+.+ +.+++..+...... ..... .+.++|.++
T Consensus 384 ~~~~~l~~~~~~l~~~L~~~------~g~~~~~~~g-------~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~ 450 (500)
T 3tcm_A 384 GILASLARRAKALEHAFNKL------EGITCNEAEG-------AMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLEST 450 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHTS------TTEECCCCCB-------TTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC------CCcEEecCCe-------EEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHC
Confidence 22377888899999999988 7888876542 33333333211100 00111 134777889
Q ss_pred CcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 421 KIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 421 gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
||.+.+|+.|.... ..+++|++++ .+++++++++++|.+++.
T Consensus 451 gI~v~pg~~f~~~~--------------------------------g~~~iRis~~--~~~e~i~~~i~~l~~~~~ 492 (500)
T 3tcm_A 451 GIVVVPGSGFGQVP--------------------------------GTWHFRCTIL--PQEDKIPAVISRFTVFHE 492 (500)
T ss_dssp CEECEESTTTCCCT--------------------------------TCCBEEEESC--SCTTTHHHHHHHHHHHHH
T ss_pred CEEEEeCcccCCCC--------------------------------CCCEEEEEEC--CCHHHHHHHHHHHHHHHH
Confidence 99999998765311 1368999999 688999999999988764
No 132
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.88 E-value=1.9e-22 Score=227.56 Aligned_cols=304 Identities=12% Similarity=0.083 Sum_probs=200.3
Q ss_pred HHHHHHHHHhHcC--------CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHH-Hhhccc-eEE
Q psy16512 107 IDQMRTKILQYFN--------TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRE-LVKTNQ-IYS 175 (815)
Q Consensus 107 ~~~~r~~la~~~g--------~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~-~~~~~g-~v~ 175 (815)
..++++.++++++ +++++ |++|+|+++|+.+++.++. ++|| |++....|+++..... ..+... .++
T Consensus 88 ~~~l~~~la~~~~~~~~~~~~~~~~~--v~~~~gg~~a~~~~~~~l~-~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~ 164 (435)
T 3piu_A 88 LPAFKKAMVDFMAEIRGNKVTFDPNH--LVLTAGATSANETFIFCLA-DPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIH 164 (435)
T ss_dssp CHHHHHHHHHHHHHHTTTSSCCCGGG--EEEEEHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHTTTTTCCEEEEEE
T ss_pred cHHHHHHHHHHHHHhhCCCCCCCHHH--EEEcCChHHHHHHHHHHhc-CCCCeEEECCCccccHHHHHHHhcCCEEEEee
Confidence 5788999999887 66776 9999999999999999997 8999 8888888887754333 221111 556
Q ss_pred cCchh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc
Q psy16512 176 FSVDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC 253 (815)
Q Consensus 176 ~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~ 253 (815)
.+.++ .++++.++++++... ....++++|++++++||||.++|.+++.++++ .|+++|+++|+|++|+.
T Consensus 165 ~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~--------~~~~~~~~li~Dea~~~ 235 (435)
T 3piu_A 165 CTSSNGFQITETALEEAYQEAE-KRNLRVKGVLVTNPSNPLGTTMTRNELYLLLS--------FVEDKGIHLISDEIYSG 235 (435)
T ss_dssp CCGGGTSCCCHHHHHHHHHHHH-HTTCCEEEEEEESSCTTTCCCCCHHHHHHHHH--------HHHHHTCEEEEECTTGG
T ss_pred CCCccCCcCCHHHHHHHHHHHH-hcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHH--------HHHHcCCEEEEeccccc
Confidence 65543 256777776554211 11246899999999999999999866555443 23389999999999875
Q ss_pred CC----CCCCCCC-------------CCCcEEEEccccccccCCc--ceEEEEecc-cccccCcccccCceEEEEecCCc
Q psy16512 254 GS----NMLDLKQ-------------HQPDFISISFYKMFGYPTG--LGALIVKQK-SAHVLNKTFYGGGTVKISMANEN 313 (815)
Q Consensus 254 g~----~~~dl~~-------------~~~D~vv~S~~K~~g~p~G--~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~ 313 (815)
+. ...++.. .+..+++.|+||.|| .+| +|+++++++ +.+.++..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~--------------- 299 (435)
T 3piu_A 236 TAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLG-LPGFRVGAIYSNDDMVVAAATKM--------------- 299 (435)
T ss_dssp GCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSC-CGGGCEEEEEESCHHHHHHHHHH---------------
T ss_pred cccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccC-CCceeEEEEEeCCHHHHHHHHHH---------------
Confidence 32 1111111 112388899999998 446 799998543 43333111
Q ss_pred ccccccCccccccCCCCChhHHHHHHHHHHHHH---hhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCC
Q psy16512 314 FHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME---KKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGES 389 (815)
Q Consensus 314 ~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~---~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~ 389 (815)
...++.+.+...++.++++... +..... +++.++++++.+.|+++ +++++.+..
T Consensus 300 -----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~---- 357 (435)
T 3piu_A 300 -----------SSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-------GISCLNGNA---- 357 (435)
T ss_dssp -----------GGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------TCEECCCCS----
T ss_pred -----------hhcCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCcccCCCe----
Confidence 0112344455555555554322 111222 77788888899999876 677765542
Q ss_pred CcccceEEEEEecCCCC-cc-CHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCC
Q psy16512 390 KYQGNIVNFNLLHKDGT-YY-GYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGK 466 (815)
Q Consensus 390 ~~~~~i~~f~~~~~~~~-~~-~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~ 466 (815)
+.++++.++..... .. ...++.+.| +++||.+++|..|.+.
T Consensus 358 ---g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~--------------------------------- 401 (435)
T 3piu_A 358 ---GLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCT--------------------------------- 401 (435)
T ss_dssp ---SSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCS---------------------------------
T ss_pred ---eEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCC---------------------------------
Confidence 57888887642110 00 122455555 5559999988655421
Q ss_pred CceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 467 PTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 467 ~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
..+++||+++.. +++++++++++|.+++.+
T Consensus 402 ~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~ 431 (435)
T 3piu_A 402 EPGWFRVCFANL-PERTLDLAMQRLKAFVGE 431 (435)
T ss_dssp STTEEEEECSSS-CHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeeCC-CHHHHHHHHHHHHHHHHH
Confidence 137899999866 899999999999998754
No 133
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.88 E-value=6.8e-22 Score=218.18 Aligned_cols=318 Identities=11% Similarity=0.115 Sum_probs=201.1
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNM 184 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~ 184 (815)
..++++.++++++.+ + +++++|+|+|+.+++.++..++|| |+++..+|+++.......+... .++++.+..+++
T Consensus 40 ~~~l~~~la~~~~~~--~--~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ 115 (374)
T 3uwc_A 40 LEKFEKRFAALHNAP--H--AIGVGTGTDALAMSFKMLNIGAGDEVITCANTFIASVGAIVQAGATPVLVDSENGYVIDP 115 (374)
T ss_dssp HHHHHHHHHHHTTCS--E--EEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTSSBCG
T ss_pred HHHHHHHHHHHhCCC--c--EEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecCCCCCcCH
Confidence 789999999999986 3 899999999999999999338998 8899989988765544332222 455554455677
Q ss_pred hhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCC
Q psy16512 185 LNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQ 264 (815)
Q Consensus 185 ~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~ 264 (815)
+.+++++ ++++++|+ ++||||.+.|+++|.++|+ ++|+++|+|++++.|.. ++....+
T Consensus 116 ~~l~~~~-------~~~~~~v~---~~n~~G~~~~~~~i~~~~~-----------~~~~~li~D~~~~~g~~-~~~~~~~ 173 (374)
T 3uwc_A 116 EKIEAAI-------TDKTKAIM---PVHYTGNIADMPALAKIAK-----------KHNLHIVEDACQTILGR-INDKFVG 173 (374)
T ss_dssp GGTGGGC-------CTTEEEEC---CBCGGGCCCCHHHHHHHHH-----------HTTCEEEEECTTCTTCE-ETTEETT
T ss_pred HHHHHhC-------CCCceEEE---EeCCcCCcCCHHHHHHHHH-----------HcCCEEEEeCCCccCce-eCCeecc
Confidence 7776644 35788877 7899999999999999999 89999999999988754 3333333
Q ss_pred --CcEEEEccc--cccccCCcceEEEEecc-cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 265 --PDFISISFY--KMFGYPTGLGALIVKQK-SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 265 --~D~vv~S~~--K~~g~p~G~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+|++++|+| |+++++...|+++.+++ +.+.+++....+... .+. ....+.++ .+..+.
T Consensus 174 ~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~---------~~~~~~~~-~~~~~~ 236 (374)
T 3uwc_A 174 SWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLIN-------RDV---------CVEYGINC-RMDTIQ 236 (374)
T ss_dssp SSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEE-------TTE---------ESSCCCBC-BCCHHH
T ss_pred ccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCccc-------cCc---------cccccccC-CCCHHH
Confidence 699999988 99983233677776653 444443332222110 000 00011111 111122
Q ss_pred HHHHH--HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCc-EEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHh
Q psy16512 340 YGFDT--MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPL-VELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNL 416 (815)
Q Consensus 340 ~al~~--l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~-~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~ 416 (815)
+++.. +..+....++.+++++++.+.|.++ ++ +++..... .....+..|.+...+ ..++.+.
T Consensus 237 aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~~~~~~----~~~~~~~~~~~~~~~-----~~~l~~~ 301 (374)
T 3uwc_A 237 AVIANRLMNQLETITEKRRGIAHLYDQSFVDL------SEFIDVPVRRE----GVYHVFHIYVLRVKY-----RDQLFQY 301 (374)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGG------TTTEECCCCCT----TEECCCSSEEEEETT-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------CCeEEeccCCC----CCceeeEEEEEEcCC-----HHHHHHH
Confidence 22222 2222122377888899999999887 55 77653321 112232333333222 3458888
Q ss_pred hhcCCcEeccCc----cCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHH
Q psy16512 417 ANLKKIQLRTGC----HCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLN 492 (815)
Q Consensus 417 l~~~gI~v~~g~----~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~ 492 (815)
|.++||.++++. ++.+.. ..++....... ..+....+.+|++++.++|++||++++++|+
T Consensus 302 L~~~gi~v~~~~~~~~~~~~~~--~~~~~~~~~~~--------------~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~ 365 (374)
T 3uwc_A 302 LKDNGIEVKIHYPIAMHLQPAA--KSLGYQQGDFP--------------MAEKHGEAVITLPAHPYLTEEEINYIIKKVR 365 (374)
T ss_dssp HHHTTBCCBCSCSSCGGGSGGG--GGGCCCTTSCH--------------HHHHHHHHEEEECCCTTSCHHHHHHHHHHHH
T ss_pred HHHCCCccccCCCCccccChhh--hhcCCccCCCc--------------cHHHHHhCEEEccCCCCCCHHHHHHHHHHHH
Confidence 999999999875 222111 11121100000 0000113789999999999999999999999
Q ss_pred HHHhhc
Q psy16512 493 QYFLQQ 498 (815)
Q Consensus 493 ~~~~~~ 498 (815)
+++.+.
T Consensus 366 ~~l~~~ 371 (374)
T 3uwc_A 366 EFYLEK 371 (374)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 987653
No 134
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.88 E-value=2.5e-21 Score=215.08 Aligned_cols=301 Identities=11% Similarity=0.042 Sum_probs=200.8
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
..++++++++++|.+ + .++++|+++|+.+++.++. ++|| |+++...|++... +...+...| ...++. .
T Consensus 61 ~~~l~~~la~~~g~~-~---~i~~~sG~~ai~~~~~~~~-~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~---~ 132 (389)
T 3acz_A 61 VEQFEEMVCSIEGAA-G---SAAFGSGMGAISSSTLAFL-QKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDT---S 132 (389)
T ss_dssp HHHHHHHHHHHHTCS-E---EEEESSHHHHHHHHHTTTC-CTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECT---T
T ss_pred HHHHHHHHHHHhCCC-e---EEEeCCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECC---C
Confidence 789999999999986 2 5666677899999999886 8898 9999999988655 333355556 334433 2
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .+++++++|++++++||||.+.|+++|.++|+ ++|+++|+|++++.+.....+ .
T Consensus 133 d~~~l~~-------~i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~-----------~~~~~livD~~~~~~~~~~~~-~ 193 (389)
T 3acz_A 133 DVEKVKA-------AWKPNTKMVYLESPANPTCKVSDIKGIAVVCH-----------ERGARLVVDATFTSPCFLKPL-E 193 (389)
T ss_dssp CHHHHHH-------TCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH-----------HHTCEEEEECTTTCTTTCCGG-G
T ss_pred CHHHHHH-------hcCCCCeEEEEECCCCCCCeecCHHHHHHHHH-----------HcCCEEEEECCCccccccCcc-c
Confidence 4444444 33467999999999999999999999999999 899999999999877532222 2
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|+++.|+||++++|.+ .|++++++ ++++.+++... ...++.+....+++.
T Consensus 194 ~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~------------------------~~g~~~~~~~~~~~~ 249 (389)
T 3acz_A 194 LGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRK------------------------DAGSLMAPMDAFLCA 249 (389)
T ss_dssp TTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHH------------------------HHCCCCCHHHHHHHH
T ss_pred cCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHH------------------------hcCCCCCHHHHHHHH
Confidence 5799999999999997866 49999998 77665533221 112233444444444
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEc-CCCCCCC---------CCcccceEEEEEecCCCCccC
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELY-HDTDYGE---------SKYQGNIVNFNLLHKDGTYYG 409 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~-~~~~~~~---------~~~~~~i~~f~~~~~~~~~~~ 409 (815)
.+++.+. ..+++..+.+..+.+.|++. +.++-+ .+.-... ....+++++|.+.+
T Consensus 250 ~~l~~l~---~r~~~~~~~~~~l~~~l~~~------~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~------- 313 (389)
T 3acz_A 250 RGMKTLP---IRMQIHMENGLKVAKFLEQH------EKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS------- 313 (389)
T ss_dssp HHHTTHH---HHHHHHHHHHHHHHHHHHHC------TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-------
T ss_pred cCccHHH---HHHHHHHHHHHHHHHHHHcC------CCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC-------
Confidence 4444332 22355566677777777765 222211 1110000 02347899999864
Q ss_pred HHHHHHhhhcCCcEecc---C------ccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCC
Q psy16512 410 YSEVQNLANLKKIQLRT---G------CHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASN 480 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~---g------~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t 480 (815)
..++.+.+.+.||.++. | ++|..... ..++.+... .+ |...+.||+|++.+++
T Consensus 314 ~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~---~~~~~~~~~-~~--------------g~~~~~iRlsvg~~~~ 375 (389)
T 3acz_A 314 FEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTH---AAVPENIMR-KQ--------------GITPELVRISVGIENV 375 (389)
T ss_dssp HHHHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTT---SSSCHHHHH-HH--------------TCCTTEEEEECCSSCH
T ss_pred HHHHHHHHHhCCCcEECcCCCCcccEeeCCccccc---ccCCHHHHH-hc--------------CCCcCeEEEEeccCCH
Confidence 12477888888988776 5 56654322 122332211 11 3335899999999877
Q ss_pred HHHHHHHHHHHH
Q psy16512 481 WDDVKYFLSFLN 492 (815)
Q Consensus 481 ~edi~~lv~~L~ 492 (815)
++.++.+.++|+
T Consensus 376 ~~li~~l~~al~ 387 (389)
T 3acz_A 376 DDIIADLKQALE 387 (389)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 777777777764
No 135
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.88 E-value=2.6e-21 Score=217.58 Aligned_cols=305 Identities=10% Similarity=0.048 Sum_probs=199.3
Q ss_pred HHHHHHHHhHcCCCCC-------ceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc
Q psy16512 108 DQMRTKILQYFNTDSD-------HYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV 178 (815)
Q Consensus 108 ~~~r~~la~~~g~~~~-------~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~ 178 (815)
+.+.+.+++.+|.+.+ ..+|++|+|+++|+.+++.++. ++|| |++..+.|+.+....+..+... .++.+.
T Consensus 85 ~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~ 163 (425)
T 2r2n_A 85 SWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII-NPGDNVLLDEPAYSGTLQSLHPLGCNIINVASDE 163 (425)
T ss_dssp HHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC-CTTCEEEEESSCCHHHHHHHGGGTCEEEEECEET
T ss_pred HHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC-CCCCEEEEeCCCcHHHHHHHHHcCCEEEEeCcCC
Confidence 3444444455687641 1259999999999999999997 8999 8888877776654443322211 344433
Q ss_pred hhhhcchhhhhhhhhhhh-----hcCCCccEEEE-ecccCCCccccChH---HHHHHhhccccccccccCCCCeEEEEec
Q psy16512 179 DDARNMLNEFKESQENVE-----NMRHSNSLFVY-PAESNFSGTKYPLS---WCNTVHRNHVFKKHFKCSRSNCFVLLDA 249 (815)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~-----~~~~~t~lv~i-~~~~n~tG~~~~l~---~I~~l~~~~~~~~~~~~~~~gi~vivD~ 249 (815)
+ .++++.++++++.... ...+++++|++ ++++||||.++|.+ +|.++|+ ++|+++|+|+
T Consensus 164 ~-~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~-----------~~~~~li~De 231 (425)
T 2r2n_A 164 S-GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELAR-----------KYDFLIIEDD 231 (425)
T ss_dssp T-EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHH-----------HTTCEEEEEC
T ss_pred C-CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHH-----------HcCCEEEEEC
Confidence 3 3566666654420000 00145788866 79999999999988 5666666 8999999999
Q ss_pred cccc----CCCCCCCCC---CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccC
Q psy16512 250 ATYC----GSNMLDLKQ---HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDG 320 (815)
Q Consensus 250 a~~~----g~~~~dl~~---~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~ 320 (815)
+++. +..+.++.. .+.++++.|+||+|+ | | +||+++++++++.+....
T Consensus 232 ~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~-GlRiG~~~~~~~l~~~l~~~~--------------------- 288 (425)
T 2r2n_A 232 PYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-S-GLRIGFLTGPKPLIERVILHI--------------------- 288 (425)
T ss_dssp TTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-S-TTCCEEEEEEHHHHHHHHHHH---------------------
T ss_pred CcccccCCCCCCCCccccCCCCCEEEEccchhhcc-C-ccceEEEecCHHHHHHHHHHH---------------------
Confidence 9862 322223322 245688999999998 6 6 799999988776553221
Q ss_pred ccccccCCCCChhHHHHHHHHHHHHH-----hhhhhH-HHHHHHHHHHHHHHHhccccCCCCcE-EEcCCCCCCCCCccc
Q psy16512 321 LFEKFEDGTVNYLAIISLKYGFDTME-----KKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLV-ELYHDTDYGESKYQG 393 (815)
Q Consensus 321 ~~~~~~~gt~~~~~~~al~~al~~l~-----~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~-~l~~~~~~~~~~~~~ 393 (815)
....++.+.+...++.++++.+. ..-..+ +++++.++++.+.|++.. |++ .+..+. .+
T Consensus 289 ---~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-----~~~~~~~~p~-------~g 353 (425)
T 2r2n_A 289 ---QVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWL-----TGLAEWHVPA-------AG 353 (425)
T ss_dssp ---HTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----SSSEEECCCS-------BS
T ss_pred ---HHhcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCeEEeCCC-------ce
Confidence 12234667777777777776532 111122 677778888888887631 454 444443 26
Q ss_pred ceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEE
Q psy16512 394 NIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRI 473 (815)
Q Consensus 394 ~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRv 473 (815)
.++++.++..... ...+.+.|.++||.+++|..|.... ....+++|+
T Consensus 354 ~~~~~~~~~~~~~---~~~~~~~l~~~gv~v~pg~~f~~~~------------------------------~~~~~~iRi 400 (425)
T 2r2n_A 354 MFLWIKVKGINDV---KELIEEKAVKMGVLMLPGNAFYVDS------------------------------SAPSPYLRA 400 (425)
T ss_dssp SEEEEEETTCSCC---HHHHHTHHHHTTEECEEGGGGSSST------------------------------TSCCCEEEE
T ss_pred EEEEEEeCCCCCH---HHHHHHHHHHCCcEEechhhhcCCC------------------------------CCCCCEEEE
Confidence 7788888642111 1125778889999999887654211 011378999
Q ss_pred eccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 474 SYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 474 s~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
|++. .+++++++++++|.+++.+
T Consensus 401 s~~~-~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 401 SFSS-ASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp ECSS-CCHHHHHHHHHHHHHHHHH
T ss_pred EeCC-CCHHHHHHHHHHHHHHHHH
Confidence 9984 4899999999999987643
No 136
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.88 E-value=1.4e-21 Score=218.41 Aligned_cols=310 Identities=14% Similarity=0.060 Sum_probs=203.7
Q ss_pred hHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHH-HHhhccc--eEEcCchhh
Q psy16512 106 EIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMR-ELVKTNQ--IYSFSVDDA 181 (815)
Q Consensus 106 ~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~-~~~~~~g--~v~~~~~~~ 181 (815)
..+++++++++++|.+ + +++++|+++|+.+++.++. ++|| ||++...|+++.... ..+...| .+.++.+
T Consensus 82 ~~~~l~~~la~~~g~~--~--~~~~~sG~~Ai~~al~~l~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-- 154 (414)
T 3ndn_A 82 TVSVFEERLRLIEGAP--A--AFATASGMAAVFTSLGALL-GAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD-- 154 (414)
T ss_dssp HHHHHHHHHHHHHTCS--E--EEEESSHHHHHHHHHHTTC-CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT--
T ss_pred HHHHHHHHHHHHHCCC--c--EEEECCHHHHHHHHHHHHh-CCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC--
Confidence 3789999999999973 2 7888999999999999997 8999 888888888765533 3344455 4444433
Q ss_pred hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCC
Q psy16512 182 RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLK 261 (815)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~ 261 (815)
+++.++++ +.++|++|++++++||||.+.|+++|.++|+ ++|+++|+|++++.+.....+
T Consensus 155 -d~~~l~~a-------i~~~t~~v~le~p~NptG~~~~l~~i~~la~-----------~~g~~livDe~~~~~~~~~~~- 214 (414)
T 3ndn_A 155 -DLSQWERA-------LSVPTQAVFFETPSNPMQSLVDIAAVTELAH-----------AAGAKVVLDNVFATPLLQQGF- 214 (414)
T ss_dssp -CHHHHHHH-------TSSCCSEEEEESSCTTTCCCCCHHHHHHHHH-----------HTTCEEEEECTTTHHHHCCCG-
T ss_pred -CHHHHHHh-------cCCCCeEEEEECCCCCCCccccHHHHHHHHH-----------HcCCEEEEECCCcccccCCch-
Confidence 44555543 3468999999999999999999999999999 899999999999876533333
Q ss_pred CCCCcEEEEccccccccCCc---ceEEEEeccccc-ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHH
Q psy16512 262 QHQPDFISISFYKMFGYPTG---LGALIVKQKSAH-VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIIS 337 (815)
Q Consensus 262 ~~~~D~vv~S~~K~~g~p~G---~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a 337 (815)
.+++|+++.|++|+|+ +.| .|+++.+++.+. .++... +...++.+....+.
T Consensus 215 ~~g~div~~S~sK~l~-~~G~~~~G~vv~~~~~~~~~l~~~~------------------------~~~g~~~~~~~a~~ 269 (414)
T 3ndn_A 215 PLGVDVVVYSGTKHID-GQGRVLGGAILGDREYIDGPVQKLM------------------------RHTGPAMSAFNAWV 269 (414)
T ss_dssp GGTCSEEEEETTTTTT-CSSCCCCEEEEECHHHHTTHHHHHH------------------------HHHCCCCCHHHHHH
T ss_pred hcCCCeEeccCCcccc-CCCCceEEEEEECHHHHHHHHHHHH------------------------HHcCCCCCHHHHHH
Confidence 4578999999999999 556 699988877653 232111 11122333333333
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCC---------CCcccceEEEEEecCCC-C
Q psy16512 338 LKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGE---------SKYQGNIVNFNLLHKDG-T 406 (815)
Q Consensus 338 l~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~---------~~~~~~i~~f~~~~~~~-~ 406 (815)
+..+++. +...+++..+.++++.+.|++. |.+. +..|.-.+. ....+++++|.+++... .
T Consensus 270 ~~~~l~~---l~~r~~~~~~~a~~l~~~L~~~------p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~ 340 (414)
T 3ndn_A 270 LLKGLET---LAIRVQHSNASAQRIAEFLNGH------PSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVA 340 (414)
T ss_dssp HHHHGGG---HHHHHHHHHHHHHHHHHHHHTC------TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHhcC------CCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcccc
Confidence 3333333 2223467778888888888877 5554 333321000 02257899999975200 0
Q ss_pred ccCHHHHHHhhhcCCcEeccCccCCc---hhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHH
Q psy16512 407 YYGYSEVQNLANLKKIQLRTGCHCNP---GSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDD 483 (815)
Q Consensus 407 ~~~~~~v~~~l~~~gI~v~~g~~~~~---~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ed 483 (815)
......+.+.|...++.++.|..++- +....+..++++...+. |..++.||+|+|..+.++.
T Consensus 341 ~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~---------------g~~~~~iRlsvG~e~~~dl 405 (414)
T 3ndn_A 341 KQRAFEVLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAI---------------GLGDGVVRISVGLEDTDDL 405 (414)
T ss_dssp HHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHT---------------TCCTTEEEEECCSSCHHHH
T ss_pred HHHHHHHHHhCccceEcCCCCCCCceeeCccccccccCCHHHHHhc---------------CCCCCeEEEEeCcCCHHHH
Confidence 00123467778888888888876543 33333444444332221 4556899999997655444
Q ss_pred HHHHHHHH
Q psy16512 484 VKYFLSFL 491 (815)
Q Consensus 484 i~~lv~~L 491 (815)
++.|.++|
T Consensus 406 i~dl~~al 413 (414)
T 3ndn_A 406 IADIDRAL 413 (414)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 44444443
No 137
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.88 E-value=1.6e-20 Score=209.55 Aligned_cols=305 Identities=13% Similarity=0.094 Sum_probs=198.6
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
.+++++++++++|.+ + +++++|+++|+.+++.++. ++|| |+++...|+++.. +...+...| .+.++.+
T Consensus 64 ~~~l~~~ia~~~g~~--~--~i~~~~g~~ai~~~~~~l~-~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~--- 135 (404)
T 1e5e_A 64 VSNLEGKIAFLEKTE--A--CVATSSGMGAIAATVLTIL-KAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA--- 135 (404)
T ss_dssp HHHHHHHHHHHHTCS--E--EEEESSHHHHHHHHHHHHC-CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT---
T ss_pred HHHHHHHHHHHhCCC--c--EEEeCChHHHHHHHHHHHh-CCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC---
Confidence 778999999999985 2 6667777899999999987 8999 9999999988765 222345555 4444332
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCC-CCeEEEEecccccCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSR-SNCFVLLDAATYCGSNMLDLK 261 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~-~gi~vivD~a~~~g~~~~dl~ 261 (815)
+++.++++ +.++|++|++++++||||.++|+++|.++|+ + +|+++++|++++.+.....+
T Consensus 136 d~~~l~~~-------i~~~t~~v~l~~p~NptG~v~~l~~i~~la~-----------~~~~~~li~De~~~~~~~~~~~- 196 (404)
T 1e5e_A 136 IPGEVKKH-------MKPNTKIVYFETPANPTLKIIDMERVCKDAH-----------SQEGVLVIADNTFCSPMITNPV- 196 (404)
T ss_dssp STTHHHHH-------CCTTEEEEEEESSCTTTCCCCCHHHHHHHHH-----------TSTTCEEEEECTTTCTTTCCGG-
T ss_pred CHHHHHHh-------cCCCCcEEEEECCCCCCCcccCHHHHHHHHH-----------hhcCCEEEEECCCchhhhCCcc-
Confidence 44555543 3467999999999999999999999999999 9 99999999999877632222
Q ss_pred CCCCcEEEEccccccccCCc--ceEEEEeccccc-ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHH
Q psy16512 262 QHQPDFISISFYKMFGYPTG--LGALIVKQKSAH-VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISL 338 (815)
Q Consensus 262 ~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al 338 (815)
.++.|+++.|+||+|++|.+ .|+++++++.++ .+.+...+ +..++.+....+++
T Consensus 197 ~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~-----------------------~~g~~~~~~~~~~~ 253 (404)
T 1e5e_A 197 DFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKD-----------------------ITGSVISPHDAWLI 253 (404)
T ss_dssp GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCC-----------------------CCCCCCCHHHHHHH
T ss_pred ccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHh-----------------------CCCCCCCHHHHHHH
Confidence 35789999999999997765 499999988765 55332211 10234555555555
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc------cc--CCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCH
Q psy16512 339 KYGFDTMEKKRKSFTNAFELSQYTYFYFKQLS------YS--NGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGY 410 (815)
Q Consensus 339 ~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~------~~--~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~ 410 (815)
..+++.+. ..+++..+.++.+.+.|++.. ++ ...|+++++.+.. ...++++.|.+.+. .
T Consensus 254 ~~~l~~~~---~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~----~~~g~~~~~~~~~~------~ 320 (404)
T 1e5e_A 254 TRGLSTLN---IRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQM----RMYGSMITFILKSG------F 320 (404)
T ss_dssp HHHHTTHH---HHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHC----SSCCSEEEEEETTH------H
T ss_pred HHhHhHHH---HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhC----CCCceEEEEEeCCC------H
Confidence 55655432 123555666667777776651 00 0012222221110 12488999987531 1
Q ss_pred HHHHHhhhcCCcEecc---C------ccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCH
Q psy16512 411 SEVQNLANLKKIQLRT---G------CHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNW 481 (815)
Q Consensus 411 ~~v~~~l~~~gI~v~~---g------~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ 481 (815)
.++.+.+.+.||.+.. | ++|.... +..++.+.... .|.+.++||+|++.
T Consensus 321 ~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~---~~~~~~~~~~~---------------~g~~~~~iRis~g~---- 378 (404)
T 1e5e_A 321 EGAKKLLDNLKLITLAVSLGGCESLIQHPASMT---HAVVPKEEREA---------------AGITDGMIRLSVGI---- 378 (404)
T ss_dssp HHHHHHHHTCSSSEESSCCCSSSCEEECGGGTT---TTTSCHHHHHH---------------TTCCTTEEEEECCS----
T ss_pred HHHHHHHHhCCCceeccCCCCcceeeecccccc---cccCCHHHHHh---------------cCCCCCeEEEEeCC----
Confidence 2467788888985443 2 2333221 11222222111 13335899999996
Q ss_pred HHHHHHHHHHHHHHh
Q psy16512 482 DDVKYFLSFLNQYFL 496 (815)
Q Consensus 482 edi~~lv~~L~~~~~ 496 (815)
|+++++++.|++++.
T Consensus 379 e~~~~li~~l~~al~ 393 (404)
T 1e5e_A 379 EDADELIADFKQGLD 393 (404)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 677777777777654
No 138
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.88 E-value=8.3e-22 Score=225.01 Aligned_cols=316 Identities=11% Similarity=-0.002 Sum_probs=210.4
Q ss_pred HHHHHHHHHhHcCCCCCc--------eeEEecCCchhhHHHHHhhhcc------------------CCCc-EEEecCCCc
Q psy16512 107 IDQMRTKILQYFNTDSDH--------YSVIFTSGATSAIKTVSEYFEF------------------NEGS-FIYLTDNHT 159 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~--------~~iv~t~g~t~al~~~~~al~~------------------~~gd-vv~~~~~h~ 159 (815)
.+++.+++++++|.+... -..+||+|+|+|+..++.+... .+++ ++++..+|+
T Consensus 120 E~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~ 199 (481)
T 4e1o_A 120 EMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHS 199 (481)
T ss_dssp HHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCH
T ss_pred HHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchH
Confidence 567888889999987531 1479999999999888877642 1455 778889999
Q ss_pred chhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhcccccccccc
Q psy16512 160 SVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKC 238 (815)
Q Consensus 160 s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~ 238 (815)
|+.....+.+... .++++.++.+++++++++|+.... ....+.+|++++++|++|.+.|+++|+++|+
T Consensus 200 s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~-~g~~~~~vv~~~~~t~~G~id~l~~I~~la~---------- 268 (481)
T 4e1o_A 200 SVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQ-RGLVPVFVCATLGTTGVCAFDCLSELGPICA---------- 268 (481)
T ss_dssp HHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHH-TTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH----------
T ss_pred HHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHh-CCCCcEEEEEecCCCCCcCcCCHHHHHHHHH----------
Confidence 9877666543322 667776778899999887752111 1123788999999999999999999999999
Q ss_pred CCCCeEEEEecccccCCCCCC-CC--CC---CCcEEEEccccccccCCcceEEEEecccc-c-cc--CcccccCceEEEE
Q psy16512 239 SRSNCFVLLDAATYCGSNMLD-LK--QH---QPDFISISFYKMFGYPTGLGALIVKQKSA-H-VL--NKTFYGGGTVKIS 308 (815)
Q Consensus 239 ~~~gi~vivD~a~~~g~~~~d-l~--~~---~~D~vv~S~~K~~g~p~G~G~l~~~~~~~-~-~l--~~~~~g~~~~~~~ 308 (815)
++|+++|||++++.+....+ .. .. .+|++++++|||++.|.|+|+++++++.. . .+ .+.+......
T Consensus 269 -~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~--- 344 (481)
T 4e1o_A 269 -REGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANS--- 344 (481)
T ss_dssp -HHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTT---
T ss_pred -HcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCccc---
Confidence 89999999999987643211 11 11 35999999999999999999999987542 1 11 1222111000
Q ss_pred ecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCC
Q psy16512 309 MANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK--SFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDY 386 (815)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~--~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~ 386 (815)
... ..........+. . ...+++.+++..+...+. ..++..++++++.+.|+++ |+++++.+..
T Consensus 345 ---~~~---~~~~~~~~~~~r-~-~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~------~g~~~~~~~~- 409 (481)
T 4e1o_A 345 ---GVA---TDFMHWQIPLSR-R-FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRND------PSFEIPAKRH- 409 (481)
T ss_dssp ---TTS---CCGGGGSSSSCC-C-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------TTEECCSCCC-
T ss_pred ---CCC---CCcccccccCCC-C-ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC------CCeEEecCCc-
Confidence 000 000001111222 2 233455556665543332 2288899999999999998 7999986543
Q ss_pred CCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCC
Q psy16512 387 GESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGK 466 (815)
Q Consensus 387 ~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~ 466 (815)
.++++|.+.+.+. ...++.+.|.++|+.+.++ .... |
T Consensus 410 ------~~~v~f~~~~~~~---~~~~l~~~L~~~g~~~~~~-----~~~~----------------------------g- 446 (481)
T 4e1o_A 410 ------LGLVVFRLKGPNS---LTENVLKEIAKAGRLFLIP-----ATIQ----------------------------D- 446 (481)
T ss_dssp ------SSEEEEEESSCHH---HHHHHHHHHHHHCSSBCEE-----EEET----------------------------T-
T ss_pred ------eeEEEEEeCCchH---HHHHHHHHHHhCCeEEEEe-----eEEC----------------------------C-
Confidence 6899999864221 1234667777777443221 1000 1
Q ss_pred CceEEEEeccCC-CCHHHHHHHHHHHHHHHh
Q psy16512 467 PTGSIRISYGHA-SNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 467 ~~g~iRvs~g~~-~t~edi~~lv~~L~~~~~ 496 (815)
..++|+++..+ +|++||++++++|+++..
T Consensus 447 -~~~lR~~~~~~~tt~~di~~~~~~i~~~~~ 476 (481)
T 4e1o_A 447 -KLIIRFTVTSQFTTRDDILRDWNLIRDAAT 476 (481)
T ss_dssp -EEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred -EEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 36899997754 589999999999998764
No 139
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.88 E-value=4.2e-21 Score=215.72 Aligned_cols=301 Identities=11% Similarity=0.064 Sum_probs=202.3
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhH--HHHHhhhccCC------------Cc-EEEecCCCcchhhHHHHhhcc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAI--KTVSEYFEFNE------------GS-FIYLTDNHTSVLGMRELVKTN 171 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al--~~~~~al~~~~------------gd-vv~~~~~h~s~~~~~~~~~~~ 171 (815)
..++|+.+++++++++++ |++|+|+++++ .+++.++. .+ ++ |++..+.|+.+....+..+..
T Consensus 78 ~~~lr~~ia~~~~~~~~~--i~~t~G~~~al~l~~~~~~l~-~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~ 154 (422)
T 3d6k_A 78 IADIRELWAEALGLPADL--VVAQDGSSLNIMFDLISWSYT-WGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFE 154 (422)
T ss_dssp CHHHHHHHHHHHTCCGGG--EEECSSCHHHHHHHHHHHHHH-HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCE
T ss_pred CHHHHHHHHHHhCCChhH--EEEecchHHHHHHHHHHHHhc-CcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCE
Confidence 678999999999999887 99999999997 67777776 44 33 888888887776555544333
Q ss_pred c-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEE-EecccCCCccccChHHHHHHhhccccccccccC-CCCeEEEEe
Q psy16512 172 Q-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFV-YPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCS-RSNCFVLLD 248 (815)
Q Consensus 172 g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~-i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~-~~gi~vivD 248 (815)
. .++++.++ ++++.++++++ ..++++|+ +++++||||.++|.+++.++++ .|+ ++|+++|+|
T Consensus 155 ~~~v~~~~~g-~d~~~l~~~l~------~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~--------~~~~~~~~~li~D 219 (422)
T 3d6k_A 155 MINVPMTDEG-PDMGVVRELVK------DPQVKGMWTVPVFGNPTGVTFSEQTCRELAE--------MSTAAPDFRIVWD 219 (422)
T ss_dssp EEEEEEETTE-ECHHHHHHHHT------STTEEEEEECCSSCTTTCCCCCHHHHHHHHH--------CCCSSTTCEEEEE
T ss_pred EEecCCCCCC-CCHHHHHHHHh------cCCCeEEEEcCCCCCCCCCCCCHHHHHHHHH--------HHhhccCCEEEEE
Confidence 2 55665543 66666665442 13688888 7999999999999998888887 666 899999999
Q ss_pred ccccc---CCC---CCCC-------CCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCc
Q psy16512 249 AATYC---GSN---MLDL-------KQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANEN 313 (815)
Q Consensus 249 ~a~~~---g~~---~~dl-------~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~ 313 (815)
++++. ... ..++ ...+.++++.|+||+ ++| | +||+++++++++.+....
T Consensus 220 e~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~-GlriG~~~~~~~l~~~l~~~~-------------- 283 (422)
T 3d6k_A 220 NAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THA-GSGVSFFASSKENIEWYASHA-------------- 283 (422)
T ss_dssp CTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCT-TSSCEEEECCHHHHHHHHHHH--------------
T ss_pred CCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cCc-ccceEEEEeCHHHHHHHHHHH--------------
Confidence 99863 111 1122 233567899999998 435 6 899999987766553221
Q ss_pred ccccccCccccccCCCCChhHHHHHHHHHHHH---Hhhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCC
Q psy16512 314 FHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM---EKKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGES 389 (815)
Q Consensus 314 ~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l---~~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~ 389 (815)
....++.+.++..++.++++.. ...-.. .+++++.++++.+.|.+.. ...+++++..+..
T Consensus 284 ----------~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l--~~~~~~~~~~p~~---- 347 (422)
T 3d6k_A 284 ----------NVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRL--SEYGVAKWTSPTG---- 347 (422)
T ss_dssp ----------HHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--GGGTCEEECCCSB----
T ss_pred ----------HhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcCCceEEeCCCc----
Confidence 1112345666666666666431 111111 1445555556666664310 0003466665542
Q ss_pred CcccceEEEEEecCCCCccCHHHHHHhhhcCCcEecc-CccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCc
Q psy16512 390 KYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRT-GCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPT 468 (815)
Q Consensus 390 ~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 468 (815)
+.++++.++.. +...+.+.|.++||.+++ |.+|..+.. ...
T Consensus 348 ---g~~~~~~~~~~-----~~~~~~~~l~~~gV~v~~~g~~f~~~~~------------------------------~~~ 389 (422)
T 3d6k_A 348 ---GYFISVDVVPG-----TASRVVELAKEAGIALTGAGSSFPLHND------------------------------PNN 389 (422)
T ss_dssp ---SSCEEEEESTT-----CHHHHHHHHHHTTEECCCTTTTSGGGCC------------------------------TTS
T ss_pred ---ceEEEEECCCC-----CHHHHHHHHHHCCeEEEcCccccCCCCC------------------------------CCC
Confidence 67788888643 234577888999999998 444431100 013
Q ss_pred eEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 469 GSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 469 g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
+++|||++. .+++++++++++|++++.
T Consensus 390 ~~iRis~~~-~~~e~i~~~~~~l~~~l~ 416 (422)
T 3d6k_A 390 ENIRLAPSL-PPVAELEVAMDGFATCVL 416 (422)
T ss_dssp CEEEECCSS-SCHHHHHHHHHHHHHHHH
T ss_pred CeEEEecCC-CCHHHHHHHHHHHHHHHH
Confidence 789999997 899999999999998764
No 140
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.87 E-value=2.3e-21 Score=229.06 Aligned_cols=317 Identities=12% Similarity=0.042 Sum_probs=215.2
Q ss_pred hHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhH-HHHhhccc-eEEcCch---
Q psy16512 106 EIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGM-RELVKTNQ-IYSFSVD--- 179 (815)
Q Consensus 106 ~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~-~~~~~~~g-~v~~~~~--- 179 (815)
.+.++++.+|+++|++. .+++++|+|+|+.+++.++. ++|| ||++..+|+|++.. ....+... +++...+
T Consensus 174 ~i~e~e~~lA~~~gae~---~i~v~nGtt~an~~ai~al~-~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~~~~~ 249 (730)
T 1c4k_A 174 PAVAAEKHAARVYNADK---TYFVLGGSSNANNTVTSALV-SNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYG 249 (730)
T ss_dssp HHHHHHHHHHHHTTCSE---EEEESSHHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECTTC
T ss_pred HHHHHHHHHHHHHCCCc---EEEECCHHHHHHHHHHHHhc-CCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCccccC
Confidence 37899999999999864 37888999999999999998 9999 99999999998754 33222111 2322221
Q ss_pred --hhhcchhh-----hhhhhhhhhh--cCCCc-cEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEec
Q psy16512 180 --DARNMLNE-----FKESQENVEN--MRHSN-SLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDA 249 (815)
Q Consensus 180 --~~~~~~~~-----~~~l~~~~~~--~~~~t-~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~ 249 (815)
+.++.+.+ +++|+..... ..+++ ++++++++ |++|.+.|+++|+++|+ ++|+++++|+
T Consensus 250 i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~-----------~~g~~livDe 317 (730)
T 1c4k_A 250 FIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIG-----------HLCDYIEFDS 317 (730)
T ss_dssp CEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHG-----------GGBSEEEEEC
T ss_pred ccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHH-----------HcCCeEEEEc
Confidence 22466666 4433200000 01112 89999988 68999999999999999 8999999999
Q ss_pred ccccCC---------CCCCCCCCCCc----EEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccc
Q psy16512 250 ATYCGS---------NMLDLKQHQPD----FISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHI 316 (815)
Q Consensus 250 a~~~g~---------~~~dl~~~~~D----~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~ 316 (815)
+|+.+. .+++...+++| +++.|+||++++|.+.|+++++++.+..- +.+.. ...+
T Consensus 318 Ah~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~-~~~i~---------~~~~-- 385 (730)
T 1c4k_A 318 AWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQ-LRYCD---------HKHF-- 385 (730)
T ss_dssp TTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTS-TTCCC---------HHHH--
T ss_pred ccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCc-ccccC---------HHHH--
Confidence 986421 22344345777 99999999999887788998988754110 00000 0000
Q ss_pred cccCccccccCCCCChhHHHHHHHHHHHHHh-hhhhH-HHHHHHHHHHHHHHHh-ccccCCCCcEEEcCCCCCC------
Q psy16512 317 KKDGLFEKFEDGTVNYLAIISLKYGFDTMEK-KRKSF-TNAFELSQYTYFYFKQ-LSYSNGQPLVELYHDTDYG------ 387 (815)
Q Consensus 317 ~~~~~~~~~~~gt~~~~~~~al~~al~~l~~-~~~~~-~~~~~l~~~l~~~L~~-l~~~~~~p~~~l~~~~~~~------ 387 (815)
......+..+++++..++++.++++++.. .+... ++..++++++++.|++ + ++++++.+....
T Consensus 386 --~~~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i------~g~~v~~p~~~~~~~~~~ 457 (730)
T 1c4k_A 386 --NNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAG------SMFRPFVPPVVNGKKWED 457 (730)
T ss_dssp --HHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTT------CSSEESSCSEETTEEGGG
T ss_pred --HHHHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhC------CCeEEccccccccccccc
Confidence 00112356788999999999999988766 34444 8888999999999988 6 578877653100
Q ss_pred --------------------C---C---Cc----ccceEEEEEecC-------CCCccCHHHHHHhhhcCCcEeccCccC
Q psy16512 388 --------------------E---S---KY----QGNIVNFNLLHK-------DGTYYGYSEVQNLANLKKIQLRTGCHC 430 (815)
Q Consensus 388 --------------------~---~---~~----~~~i~~f~~~~~-------~~~~~~~~~v~~~l~~~gI~v~~g~~~ 430 (815)
+ . .. .+..+.+..++. ....++..++.+.|.++||.+...
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~--- 534 (730)
T 1c4k_A 458 GDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKS--- 534 (730)
T ss_dssp SCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEE---
T ss_pred cccccccccchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEEC---
Confidence 0 0 00 011156665421 111244567888998889987531
Q ss_pred CchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 431 NPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 431 ~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
+ .+.+|++++..+|++++++|+++|.++..+
T Consensus 535 ---------~---------------------------~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~ 565 (730)
T 1c4k_A 535 ---------D---------------------------LNSILFLMTPAETPAKMNNLITQLLQLQRL 565 (730)
T ss_dssp ---------C---------------------------SSEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---------C---------------------------CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 0 267999999999999999999999987654
No 141
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.87 E-value=1e-21 Score=222.26 Aligned_cols=304 Identities=10% Similarity=0.023 Sum_probs=196.9
Q ss_pred HHHHHHHHHhHc------CCCCCceeEEecCCchhhHHHHHhhhccCCCc---------------EEEe-cCCCcchhhH
Q psy16512 107 IDQMRTKILQYF------NTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS---------------FIYL-TDNHTSVLGM 164 (815)
Q Consensus 107 ~~~~r~~la~~~------g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd---------------vv~~-~~~h~s~~~~ 164 (815)
..++|+.+++++ ++++++ |++|+|+++|+.+++.++. ++|| +|++ ..+|+.+...
T Consensus 85 ~~~lr~~ia~~l~~~~g~~~~~~~--i~~t~G~t~al~~~~~~l~-~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~ 161 (444)
T 3if2_A 85 DSAFIDALVGFFNRHYDWNLTSEN--IALTNGSQNAFFYLFNLFG-GAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDV 161 (444)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGG--EEEESSHHHHHHHHHHHSS-EEEECC-------CEEEEEEEESSSSCCGGGTTC
T ss_pred CHHHHHHHHHHHHhhcCCCCCHHH--EEEecCcHHHHHHHHHHHh-CCCccccccccccccccceEEEeCCCCccchhhc
Confidence 678999999987 667777 9999999999999999997 7775 5554 6677665442
Q ss_pred HH---Hhhccc--e--EEcCc-h----hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC---hHHHHHHhhc
Q psy16512 165 RE---LVKTNQ--I--YSFSV-D----DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP---LSWCNTVHRN 229 (815)
Q Consensus 165 ~~---~~~~~g--~--v~~~~-~----~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~---l~~I~~l~~~ 229 (815)
.. .....+ . ++++. + ..++++.+++++. .+.+++++|++++++||||.++| +++|.++|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~----~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~- 236 (444)
T 3if2_A 162 HVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPA----LKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAK- 236 (444)
T ss_dssp CSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHH----HHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHH-
T ss_pred ccccchhhccCceEEecccccccCccccCCCHHHHHHHHH----hcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHH-
Confidence 21 122233 3 34443 1 1467777766432 13567999999999999999999 555666677
Q ss_pred cccccccccCCCCeEEEEecccccCCCC-----CCCCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccC
Q psy16512 230 HVFKKHFKCSRSNCFVLLDAATYCGSNM-----LDLKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGG 302 (815)
Q Consensus 230 ~~~~~~~~~~~~gi~vivD~a~~~g~~~-----~dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~ 302 (815)
++|+++|+|++++.+... ......+.++++.|+||+ + ++| +||++.++++++.+.....
T Consensus 237 ----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~-~~G~r~G~~~~~~~l~~~~~~~~~-- 302 (444)
T 3if2_A 237 ----------RYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-G-LPGMRTGIIVADAKVIEAVSAMNA-- 302 (444)
T ss_dssp ----------HTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-T-CGGGCCEEEECCHHHHHHHHHHHH--
T ss_pred ----------HCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhc-c-CCCCceEEEEECHHHHHHHHHHHH--
Confidence 899999999998743221 111224578999999997 4 335 7999888877665532210
Q ss_pred ceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHH---hhhhhH-HHHHHHHHHHHHHHHhccccCCCC--
Q psy16512 303 GTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME---KKRKSF-TNAFELSQYTYFYFKQLSYSNGQP-- 376 (815)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~---~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p-- 376 (815)
....+.+.....++...++... .....+ +++.++++.+.+.|.+.. +
T Consensus 303 ----------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~ 355 (444)
T 3if2_A 303 ----------------------VVNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQAL-----GDY 355 (444)
T ss_dssp ----------------------HHHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHS-----SSS
T ss_pred ----------------------hccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccC
Confidence 0111233344444444443211 111112 455666667777775521 2
Q ss_pred cEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCcc
Q psy16512 377 LVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHIC 456 (815)
Q Consensus 377 ~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c 456 (815)
++.+..+.. +.++++.++... ++..++.+.|.++||.+++|..|..+.....
T Consensus 356 ~~~~~~~~~-------g~~~~~~~~~~~---~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~------------------ 407 (444)
T 3if2_A 356 PLMIHKPEG-------AIFLWLWFKDLP---ISTLDLYERLKAKGTLIVPSEYFFPGVDVSD------------------ 407 (444)
T ss_dssp SEEEECCCB-------SSEEEEEETTCS---SCHHHHHHHHHHTTEECEEGGGSCTTCCCTT------------------
T ss_pred CceEecCCc-------cEEEEEEcCCCC---CCHHHHHHHHHHCCeEEecchhhcCCCCCcc------------------
Confidence 466665442 677777776411 2344688888999999999988754311000
Q ss_pred CCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 457 GDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 457 ~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.....+++|||++. ++++|++++++|.+++.
T Consensus 408 -------~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~ 438 (444)
T 3if2_A 408 -------YQHAHECIRMSIAA--DEQTLIDGIKVIGEVVR 438 (444)
T ss_dssp -------CSGGGSEEEEESSS--CHHHHHHHHHHHHHHHH
T ss_pred -------cccCCCeEEEEEeC--CHHHHHHHHHHHHHHHH
Confidence 00113789999996 89999999999998764
No 142
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.87 E-value=9.3e-21 Score=210.60 Aligned_cols=322 Identities=14% Similarity=0.115 Sum_probs=216.3
Q ss_pred hhhhhhhhccc------ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGAG------VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~~------~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+.. ..++.+.+++.+.+....+.. . ...... .+++++++++++| .++ ++|++|++
T Consensus 35 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~-~~~~~~----~~~l~~~la~~~g--~~~--v~~~~~gt 103 (392)
T 3ruy_A 35 GNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTS--R-AFHSDQ----LGPWYEKVAKLTN--KEM--VLPMNTGA 103 (392)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCC--T-TSEETT----HHHHHHHHHHHHT--CSE--EEEESSHH
T ss_pred CCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccc--c-ccCCHH----HHHHHHHHHHhcC--CCE--EEEeCcHH
Confidence 34566665432 136788888877765422211 1 112333 7899999999998 444 99999999
Q ss_pred hhHHHHHhhhccC--------C-Cc-EEEecCCCcchhhHH-HHhhccc----eEEcCch----hhhcchhhhhhhhhhh
Q psy16512 135 SAIKTVSEYFEFN--------E-GS-FIYLTDNHTSVLGMR-ELVKTNQ----IYSFSVD----DARNMLNEFKESQENV 195 (815)
Q Consensus 135 ~al~~~~~al~~~--------~-gd-vv~~~~~h~s~~~~~-~~~~~~g----~v~~~~~----~~~~~~~~~~~l~~~~ 195 (815)
+|+.+++.++... + ++ ||+....|++..... ....... ..+...+ ...+++.+++
T Consensus 104 ~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~------ 177 (392)
T 3ruy_A 104 EAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKA------ 177 (392)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTTCHHHHHH------
T ss_pred HHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcccHHHHHH------
Confidence 9999999876521 2 45 788788876544322 2211111 1110000 0114444444
Q ss_pred hhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC----CCCCCCCCCc
Q psy16512 196 ENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN----MLDLKQHQPD 266 (815)
Q Consensus 196 ~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~----~~dl~~~~~D 266 (815)
.+.+++++|++++++||||.++| +++|.++|+ ++|+++|+|++++ ++.. ..+.....+|
T Consensus 178 -~l~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d 245 (392)
T 3ruy_A 178 -AITPNTAAFILEPIQGEAGINIPPAGFLKEALEVCK-----------KENVLFVADEIQTGLGRTGKVFACDWDNVTPD 245 (392)
T ss_dssp -HCCTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHH-----------TTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred -HhccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEeechhCCCccccchhhhccCCCCC
Confidence 33478999999999999999999 999999999 8999999999985 3221 1122233578
Q ss_pred EEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH
Q psy16512 267 FISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM 345 (815)
Q Consensus 267 ~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l 345 (815)
+++ ++|.+++. ..+|++++++++++.+.+... ....+.+.+++.++.++++.+
T Consensus 246 ~~~--~SK~l~gG~~~~G~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~a~~~~l~~~ 299 (392)
T 3ruy_A 246 MYI--LGKALGGGVFPISCAAANRDILGVFEPGSH------------------------GSTFGGNPLACAVSIAALEVL 299 (392)
T ss_dssp EEE--ECGGGGTTTSCCEEEEECHHHHTTCCTTSS------------------------CCSSTTCHHHHHHHHHHHHHH
T ss_pred EEE--EchhhhCChhhhEEEEECHHHHhhhccCCc------------------------CCCCCCCHHHHHHHHHHHHHH
Confidence 775 46988731 238999999887766543221 112366778888888888876
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEec
Q psy16512 346 EKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLR 425 (815)
Q Consensus 346 ~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~ 425 (815)
.. ....++.+++++++.+.|+++.+ +.+....+ .++++.+.++. +. .++.+.|.++||.++
T Consensus 300 ~~-~~~~~~~~~~~~~l~~~L~~~~~----~~~~~~~~--------~g~~~~~~~~~-~~-----~~l~~~l~~~gi~v~ 360 (392)
T 3ruy_A 300 EE-EKLTERSLQLGEKLVGQLKEIDN----PMITEVRG--------KGLFIGIELNE-PA-----RPYCEQLKAAGLLCK 360 (392)
T ss_dssp HH-TTHHHHHHHHHHHHHHHHTTCCC----TTEEEEEE--------ETTEEEEEESS-CS-----HHHHHHHHTTTEECC
T ss_pred Hh-hhHHHHHHHHHHHHHHHHHHhcC----CCceEEEe--------eeeEEEEEEcc-hH-----HHHHHHHHHCCcEEe
Confidence 55 22338899999999999987621 33444322 36788888765 22 357888889999998
Q ss_pred cCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 426 TGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 426 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
+|. .+++|+++++..+++|+++++++|++++
T Consensus 361 ~~~---------------------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 361 ETH---------------------------------------ENVIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp CBT---------------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred cCC---------------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 652 2789999999999999999999999875
No 143
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.87 E-value=4.6e-22 Score=225.24 Aligned_cols=308 Identities=15% Similarity=0.120 Sum_probs=194.9
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHH-HHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMR-ELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~-~~~~~~g--~v~~~~~~~~ 182 (815)
.+++++++++++|.+ + +++++|+++|+.+++. +. ++|| ||++...|+++.... ..+...| .+.++.+
T Consensus 135 ~~~l~~~la~~~g~~--~--~i~~~sGt~al~~~l~-~~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~--- 205 (464)
T 1ibj_A 135 RDALESLLAKLDKAD--R--AFCFTSGMAALSAVTH-LI-KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT--- 205 (464)
T ss_dssp HHHHHHHHHHHHTCS--E--EEEESSHHHHHHHHHT-TS-CTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT---
T ss_pred HHHHHHHHHHHhCCC--e--EEEECCHHHHHHHHHH-Hh-CCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC---
Confidence 788999999999975 3 6777777889998886 54 8898 888998888876532 3344455 3444332
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .+.+++++|++++++||||.++|+++|.++|+ ++|+++|+|++++.|.....+ .
T Consensus 206 d~~~l~~-------~i~~~tk~v~l~~p~NptG~v~~l~~i~~la~-----------~~gi~livDea~~~g~~~~~~-~ 266 (464)
T 1ibj_A 206 KLDEVAA-------AIGPQTKLVWLESPTNPRQQISDIRKISEMAH-----------AQGALVLVDNSIMSPVLSRPL-E 266 (464)
T ss_dssp SHHHHHH-------HCCSSEEEEEECSSCTTTCCCCCHHHHHHHHH-----------TTTCEEEEECTTTCTTTCCGG-G
T ss_pred CHHHHHH-------HhccCceEEEEeCCCCCCCEeecHHHHHHHHH-----------HcCCEEEEECCCcccccCChh-h
Confidence 4445544 33478999999999999999999999999999 899999999999887542222 2
Q ss_pred CCCcEEEEccccccccCCcc--eEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTGL--GALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G~--G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|+++.|+||+|++|.|+ |++++++ ++.+.+.... ....++.+....+++.
T Consensus 267 ~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~------------------------~~~g~~~~~~~~~a~~ 322 (464)
T 1ibj_A 267 LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQ------------------------NSEGSGLAPFDCWLCL 322 (464)
T ss_dssp TTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHH------------------------HHTTCBCCHHHHHHHH
T ss_pred cCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHH------------------------HhcCCCCCHHHHHHHH
Confidence 57999999999999878785 9999986 5555443221 0112234444444544
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc------c--cCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHH
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLS------Y--SNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYS 411 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~------~--~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~ 411 (815)
.+++.+.. .+++.......+.+.|++.. + ....|+++++.+.. ...+++++|.+.+.. ...
T Consensus 323 ~al~~~~~---r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~----~g~g~~~~~~l~~~~----~~~ 391 (464)
T 1ibj_A 323 RGIKTMAL---RIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQA----KGAGSVFSFITGSVA----LSK 391 (464)
T ss_dssp HHHTTHHH---HHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTC----SCCCSEEEEECSCHH----HHH
T ss_pred hchhhHHH---HHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccC----CCCceEEEEEECCHH----HHH
Confidence 55543221 11222222233334443320 0 11224555554432 235789999874210 112
Q ss_pred HHHHhhhcCCcEeccCc----cCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHH
Q psy16512 412 EVQNLANLKKIQLRTGC----HCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYF 487 (815)
Q Consensus 412 ~v~~~l~~~gI~v~~g~----~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~l 487 (815)
.+.+.|...||.++.|. .|.+... .+.+.+.+ .-..-|..+++||+|++. ||++++
T Consensus 392 ~~~~~L~~~gi~v~~G~~~sl~~~p~~~-~~~~~~~~---------------~~~~~g~~~~~iRlsvg~----edi~~l 451 (464)
T 1ibj_A 392 HLVETTKYFSIAVSFGSVKSLISMPCFM-SHASIPAE---------------VREARGLTEDLVRISAGI----EDVDDL 451 (464)
T ss_dssp HHHHHCSSSEECSCCCSSSCEEECTTTT-TTCSCCSS---------------SSSSSSCCTTCEEEECCS----SCHHHH
T ss_pred HHHHhcCcceEeecCCCCceeeeccccc-ccccCCHH---------------HHHhcCCCcCeEEEEeCC----CCHHHH
Confidence 36667777899999886 3433211 11111000 000112335789999996 789999
Q ss_pred HHHHHHHHhh
Q psy16512 488 LSFLNQYFLQ 497 (815)
Q Consensus 488 v~~L~~~~~~ 497 (815)
++.|++++..
T Consensus 452 i~~L~~al~~ 461 (464)
T 1ibj_A 452 ISDLDIAFKT 461 (464)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhh
Confidence 9999987753
No 144
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.87 E-value=3.5e-21 Score=219.59 Aligned_cols=349 Identities=10% Similarity=0.015 Sum_probs=221.8
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCC----hhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHG----NSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAI 137 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s----~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al 137 (815)
.++|+ .......+.+.+++.+.+.. .+|.. .....+. .+++++++++++|++. .+++++|+++|+
T Consensus 68 ~~~lg-~~~~~~~p~v~~~~~~~~~~---~~~~~~~~~~~g~~~l----~~~l~~~la~~~g~~~---~~~~~~ggt~a~ 136 (474)
T 1wyu_B 68 FYPLG-SCTMKYNPKLHEEAARLFAD---LHPYQDPRTAQGALRL----MWELGEYLKALTGMDA---ITLEPAAGAHGE 136 (474)
T ss_dssp CCCBT-TTCCCCCCHHHHHHHHTTSS---CCTTSCGGGCHHHHHH----HHHHHHHHHHHHTCSE---EECCCSSHHHHH
T ss_pred ccccc-cccccCCHHHHHHHHHHHHh---cCCCCchhhChHHHHH----HHHHHHHHHHHHCCCc---eeecChHHHHHH
Confidence 45666 33344446677776654221 23322 1223344 8899999999999865 277889999999
Q ss_pred HHHHhhhc---cCCC------cEEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEE
Q psy16512 138 KTVSEYFE---FNEG------SFIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVY 207 (815)
Q Consensus 138 ~~~~~al~---~~~g------dvv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i 207 (815)
.+++.++. .++| .||++...|+++.......+... .++++.++.++++.+++++ +++|++|++
T Consensus 137 ~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~~~~~d~~~L~~~i-------~~~t~~v~~ 209 (474)
T 1wyu_B 137 LTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDLEALKREL-------GPHVAALML 209 (474)
T ss_dssp HHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHC-------STTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCCCCCCcCHHHHHHhh-------CCCceEEEE
Confidence 87555542 1355 38888889988876654433222 5556555666777776644 467999999
Q ss_pred ecccCCCccc-cChHHHHHHhhccccccccccCCCCeEEEEecccccCCC-CCCCCCCCCcEEEEccccccccCC-----
Q psy16512 208 PAESNFSGTK-YPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-MLDLKQHQPDFISISFYKMFGYPT----- 280 (815)
Q Consensus 208 ~~~~n~tG~~-~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-~~dl~~~~~D~vv~S~~K~~g~p~----- 280 (815)
+++ |++|.+ .|+++|+++|+ ++|+++|+|++++.+.. ..+...+++|++++|+||+|+.|.
T Consensus 210 ~~p-n~~G~~~~~l~~i~~l~~-----------~~g~~li~Dea~~~~~~g~~~~~~~g~di~~~s~~K~~~~p~g~gG~ 277 (474)
T 1wyu_B 210 TNP-NTLGLFERRILEISRLCK-----------EAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGP 277 (474)
T ss_dssp CSS-CTTSCCCTTHHHHHHHHH-----------HHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCC
T ss_pred ECC-CCCcccCCCHHHHHHHHH-----------HcCCEEEEeCchhhhhccCCCcccCCCcEEEEeCccccccCCCCCCC
Confidence 997 689998 69999999999 89999999999976653 233334578999999999998774
Q ss_pred cceEEEEecccccccCccccc-CceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh-hh-HHHHHH
Q psy16512 281 GLGALIVKQKSAHVLNKTFYG-GGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-KS-FTNAFE 357 (815)
Q Consensus 281 G~G~l~~~~~~~~~l~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-~~-~~~~~~ 357 (815)
|+|++++++++++.+...+.+ ++. .+.... . +.....++..++.+..++.++...+..+...+ .. .++..+
T Consensus 278 ~~G~~~~~~~l~~~l~~~~~~~~g~-~~~~~~-~----~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~ 351 (474)
T 1wyu_B 278 GSGPVGVKAHLAPYLPVPLVERGEE-GFYLDF-D----RPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVL 351 (474)
T ss_dssp CCCCEEECGGGGGGCCSCEEEECSS-CEEEEC-C----CTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcHHHHHhCCCCeeeccCC-eeEecc-c----CcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999887766522221 110 011110 0 01111234445556554444444444322211 11 277888
Q ss_pred HHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhh
Q psy16512 358 LSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQR 437 (815)
Q Consensus 358 l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~ 437 (815)
+++++.+.|+++ ++++..+.. ....+.+.+. . ..+..++.+.|.++||.+. +..+.
T Consensus 352 ~~~~l~~~L~~~-------g~~~~~~~~------~~~~~~~~~~--~--~~~~~~l~~~L~~~Gi~~~-~~~~~------ 407 (474)
T 1wyu_B 352 NARYLKELLKEK-------GYRVPYDGP------SMHEFVAQPP--E--GFRALDLAKGLLELGFHPP-TVYFP------ 407 (474)
T ss_dssp HHHHHHHHHHHT-------TCBCSSCSS------CCSCEEEBCS--T--TCCHHHHHHHHHHTTCCCC-EESCS------
T ss_pred HHHHHHHHHhhc-------CcEecCCCC------cceEEEEEcC--C--CCCHHHHHHHHHHCCcccc-ccccc------
Confidence 999999999876 445422211 1111223331 1 1334568888888899753 21110
Q ss_pred hcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 438 FLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 438 ~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
....+++||+++.+++++++++++++|++++.+
T Consensus 408 ---------------------------~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 408 ---------------------------LIVKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp ---------------------------TTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred ---------------------------cccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 001378999999999999999999999998766
No 145
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.87 E-value=6.1e-21 Score=214.18 Aligned_cols=326 Identities=11% Similarity=0.057 Sum_probs=201.3
Q ss_pred hHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEc-Cchh
Q psy16512 106 EIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSF-SVDD 180 (815)
Q Consensus 106 ~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~-~~~~ 180 (815)
..+++++++++++|.+. .+++++ +++|+.+++.++. ++|| ||++..+|++... +...+...| ...+ +.+
T Consensus 59 ~~~~l~~~la~~~g~~~---~v~~~s-Gt~A~~~~l~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~- 132 (421)
T 2ctz_A 59 TVDVLEKRLAALEGGKA---ALATAS-GHAAQFLALTTLA-QAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE- 132 (421)
T ss_dssp HHHHHHHHHHHHHTCSE---EEEESS-HHHHHHHHHHHHC-CTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTC-
T ss_pred HHHHHHHHHHHHhCCCc---eEEecC-HHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCC-
Confidence 37899999999999862 255555 5999999999886 8898 8899999988765 333344556 4445 432
Q ss_pred hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccc-ccCCCCCC
Q psy16512 181 ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAAT-YCGSNMLD 259 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~-~~g~~~~d 259 (815)
+++.+++ .+.++|++|++++++||+|.+.|+++|.++|+ ++|+++|+|+++ +.|... +
T Consensus 133 --d~~~l~~-------~i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~-----------~~g~~livD~~~~~~g~~~-~ 191 (421)
T 2ctz_A 133 --RPEEFLA-------LTDEKTRAWWVESIGNPALNIPDLEALAQAAR-----------EKGVALIVDNTFGMGGYLL-R 191 (421)
T ss_dssp --CHHHHHH-------HCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH-----------HHTCEEEEECGGGGGGTSC-C
T ss_pred --CHHHHHH-------hhccCCeEEEEECCCCCCCcccCHHHHHHHHH-----------HcCCEEEEECCcccccccC-C
Confidence 4445544 33468999999999999999999999999999 899999999999 877532 2
Q ss_pred CCCCCCcEEEEccccccccCCc-ceEEEEec---cc----ccccCcccccCceEEEEecCC--cccccccCccccc----
Q psy16512 260 LKQHQPDFISISFYKMFGYPTG-LGALIVKQ---KS----AHVLNKTFYGGGTVKISMANE--NFHIKKDGLFEKF---- 325 (815)
Q Consensus 260 l~~~~~D~vv~S~~K~~g~p~G-~G~l~~~~---~~----~~~l~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~---- 325 (815)
....++|++++|+||++++|.+ +|++++.+ ++ .+.+.+...++........+. .+.. ..++
T Consensus 192 ~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~-----~~r~~~~~ 266 (421)
T 2ctz_A 192 PLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIV-----KARVDGLR 266 (421)
T ss_dssp GGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHH-----HHHHTHHH
T ss_pred ccccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHH-----HHHHHHHH
Confidence 2245799999999999996653 78888852 22 223434333332211000000 0000 0111
Q ss_pred -cCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcC-CCCCCCC----------Cccc
Q psy16512 326 -EDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYH-DTDYGES----------KYQG 393 (815)
Q Consensus 326 -~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~-~~~~~~~----------~~~~ 393 (815)
.....+....+++..+++.+. ..+++..++++++.+.|+++ |+++.+. |.....+ ...+
T Consensus 267 ~~g~~~~~~~a~~~~~~l~~l~---~r~~~~~~~a~~l~~~L~~~------p~v~~v~~p~~~~~~~~~~~~~~~~~~~g 337 (421)
T 2ctz_A 267 DQGQALGPFEAWVVLLGMETLS---LRAERHVENTLHLAHWLLEQ------PQVAWVNYPGLPHHPHHDRAQKYFKGKPG 337 (421)
T ss_dssp HHCCCCCHHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHHHHTC------TTEEEEECTTSTTCTTHHHHHHHHTTCCC
T ss_pred hcCCCCCHHHHHHHHcCcchHH---HHHHHHHHhHHHHHHHHHhC------CCeeEEECCCCCCCCCHHHHHHhccCCCc
Confidence 122444444444444444432 23456668999999999988 7888763 3210000 2468
Q ss_pred ceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCc---hhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceE
Q psy16512 394 NIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNP---GSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGS 470 (815)
Q Consensus 394 ~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~---~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~ 470 (815)
++++|.+.+. .. ....+...+...++.++.|..|+- +....+..++.+..... |..++.
T Consensus 338 ~ivsf~l~~~-~~--~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~---------------g~~~~~ 399 (421)
T 2ctz_A 338 AVLTFGLKGG-YE--AAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQA---------------GVSPEM 399 (421)
T ss_dssp SEEEEEETTH-HH--HHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHH---------------TCCTTE
T ss_pred eEEEEEeCCC-HH--HHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhc---------------CCCCCe
Confidence 9999998642 11 112355555666777777744432 11112223333322221 344589
Q ss_pred EEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 471 IRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 471 iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
||+|+|.++ ++.+++.|++.
T Consensus 400 vRlS~g~e~----~~~li~~l~~a 419 (421)
T 2ctz_A 400 VRLSVGLEH----VEDLKAELKEA 419 (421)
T ss_dssp EEEECCSSC----HHHHHHHHHHH
T ss_pred EEEEeCCCC----HHHHHHHHHHH
Confidence 999999764 55555555543
No 146
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.87 E-value=1.9e-21 Score=215.85 Aligned_cols=352 Identities=10% Similarity=0.060 Sum_probs=214.8
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-E
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-F 151 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-v 151 (815)
+.+.+.+++.+.+....+. +..... +.++++.+++++|.+ + .|++++| |+|+.+++.++..++|| |
T Consensus 15 ~~~~~~~a~~~~l~~~~~~-----~~~~~~----~~~l~~~la~~~~~~-~--~i~~~sG-t~al~~~l~~l~~~~gd~V 81 (388)
T 1b9h_A 15 YDDAERNGLVRALEQGQWW-----RMGGDE----VNSFEREFAAHHGAA-H--ALAVTNG-THALELALQVMGVGPGTEV 81 (388)
T ss_dssp CCHHHHHHHHHHHHTSCCB-----TTTCSH----HHHHHHHHHHHTTCS-E--EEEESCH-HHHHHHHHHHTTCCTTCEE
T ss_pred CCHHHHHHHHHHHHcCCee-----ecCCHH----HHHHHHHHHHHhCCC-e--EEEeCCH-HHHHHHHHHHcCCCCcCEE
Confidence 3467777777766542111 112233 889999999999986 2 3777766 89999999998338898 9
Q ss_pred EEecCCCcchhhHHHHhhccc-eEEcCch-hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhc
Q psy16512 152 IYLTDNHTSVLGMRELVKTNQ-IYSFSVD-DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRN 229 (815)
Q Consensus 152 v~~~~~h~s~~~~~~~~~~~g-~v~~~~~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~ 229 (815)
+++..+|+++.......+... .++++++ ..++++.+++++ ++++++|+ ++|+||.+.|+++|.++|+
T Consensus 82 i~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i-------~~~~~~v~---~~n~tG~~~~l~~i~~la~- 150 (388)
T 1b9h_A 82 IVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAV-------TPRTKVIM---PVHMAGLMADMDALAKISA- 150 (388)
T ss_dssp EEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHC-------CTTEEEEC---CBCGGGCCCCHHHHHHHHH-
T ss_pred EECCCccHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhc-------CcCceEEE---EeCCccCcCCHHHHHHHHH-
Confidence 999999998866544332222 4555543 356777766543 45788877 8899999999999999999
Q ss_pred cccccccccCCCCeEEEEecccccCCCC--CCCCCCCCcEEEEccc--cccccCCcceEEEEecc-c--ccccCcccccC
Q psy16512 230 HVFKKHFKCSRSNCFVLLDAATYCGSNM--LDLKQHQPDFISISFY--KMFGYPTGLGALIVKQK-S--AHVLNKTFYGG 302 (815)
Q Consensus 230 ~~~~~~~~~~~~gi~vivD~a~~~g~~~--~dl~~~~~D~vv~S~~--K~~g~p~G~G~l~~~~~-~--~~~l~~~~~g~ 302 (815)
++|+++|+|++++.|... .++..++ |++++||+ |+++++ ..|+++.+++ + ++.+.... +.
T Consensus 151 ----------~~~~~li~D~a~~~g~~~~~~~~~~~~-~i~~~S~s~~K~l~g~-~~G~~~~~~~~~~~~~~~~~~~-~~ 217 (388)
T 1b9h_A 151 ----------DTGVPLLQDAAHAHGARWQGKRVGELD-SIATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFLRH-SC 217 (388)
T ss_dssp ----------HHTCCBCEECTTCTTCEETTEEGGGSS-SCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHHHT-BT
T ss_pred ----------HcCCEEEEecchhcCCccCCeeccccc-ceEEEEccCCCcccCC-CeEEEEECCHHHHHHHHHHHHH-hC
Confidence 899999999999887543 2333333 56666655 777644 3688888876 3 33332111 11
Q ss_pred ceEEEEecCCcccccccCccccccCCC---CChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE
Q psy16512 303 GTVKISMANENFHIKKDGLFEKFEDGT---VNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE 379 (815)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~gt---~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~ 379 (815)
+.. ...+. ......|+ ++....+++..+++.+.. ..++.+++++++.+.|+++ |+++
T Consensus 218 ~~~-----~~~~~------~~~~~~g~~~~~~~~~~a~~~~~~~~l~~---~~~~~~~~~~~l~~~L~~~------~~~~ 277 (388)
T 1b9h_A 218 GRP-----RDDRR------YFHKIAGSNMRLNEFSASVLRAQLARLDE---QIAVRDERWTLLSRLLGAI------DGVV 277 (388)
T ss_dssp TCC-----TTCSS------CCCCSCCCBCBCBHHHHHHHHHHHTTHHH---HHHHHHHHHHHHHHHHHTS------TTCE
T ss_pred CCC-----ccCcc------ceeecccccCCcCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccC------CCcc
Confidence 110 00000 00112233 344444443333333322 3367778899999999887 6788
Q ss_pred EcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhh---hcCCCH---HHHHHHhhcC
Q psy16512 380 LYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQR---FLGLSD---ITIKFHFQQG 453 (815)
Q Consensus 380 l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~---~~g~~~---~~~~~~~~~~ 453 (815)
++.+... .....++++++.+++... .+..++.+.|.++||.++.+... .+... .+|... +.+...
T Consensus 278 ~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~gI~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---- 348 (388)
T 1b9h_A 278 PQGGDVR-ADRNSHYMAMFRIPGLTE--ERRNALVDRLVEAGLPAFAAFRA--IYRTDAFWELGAPDESVDAIARR---- 348 (388)
T ss_dssp ECCCCTT-CCBCCCSEEEEECTTCCH--HHHHHHHHHHHHTTCCEEECCCC--GGGSHHHHHSSCCSSCHHHHHHT----
T ss_pred ccCCCcC-CCccceEEEEEEeCCcCc--ccHHHHHHHHHHCCCCcccccCc--cccChHhHhcCCCcccccccccC----
Confidence 7753210 001235788888764210 12335788888899999886432 11111 011110 000000
Q ss_pred CccCCcccccCCCCceEEEEeccCCC-CHHHHHHHHHHHHHHHh
Q psy16512 454 HICGDDKDIIDGKPTGSIRISYGHAS-NWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 454 ~~c~~~~~~~~~~~~g~iRvs~g~~~-t~edi~~lv~~L~~~~~ 496 (815)
|+. .+....+.||++++..+ |++||++++++|++++.
T Consensus 349 --~~~----~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~ 386 (388)
T 1b9h_A 349 --CPN----TDAISSDCVWLHHRVLLAGEPELHATAEIIADAVA 386 (388)
T ss_dssp --CHH----HHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred --CHH----HHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHh
Confidence 000 00011368999999999 99999999999998764
No 147
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.87 E-value=4.1e-21 Score=215.18 Aligned_cols=299 Identities=9% Similarity=0.054 Sum_probs=191.4
Q ss_pred HHHHHHHHHhHc------CCCCCceeEEecCCchhhHHHHHhhhccCCCc------EEEe-cCCCcchhhHHHHhh---c
Q psy16512 107 IDQMRTKILQYF------NTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS------FIYL-TDNHTSVLGMRELVK---T 170 (815)
Q Consensus 107 ~~~~r~~la~~~------g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd------vv~~-~~~h~s~~~~~~~~~---~ 170 (815)
..++|+.+++++ ++++++ |++|+|+|+|+.+++.++. ++|| ++++ .++|+.+........ .
T Consensus 77 ~~~lr~~ia~~~~~~~g~~~~~~~--i~~t~G~t~al~~~~~~l~-~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~ 153 (417)
T 3g7q_A 77 KTALLNALAVLLRETLGWDIEPQN--IALTNGSQSAFFYLFNLFA-GRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVS 153 (417)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCGGG--EEEESCHHHHHHHHHHHHS-BC----CCBEEEESSCCCHHHHHC-----CCEEE
T ss_pred cHHHHHHHHHHHHHHhCCCCCccc--EEEeCCcHHHHHHHHHHHc-CCCccCCcceEEEeCCCccccchhhccchhhhcc
Confidence 678899999887 577776 9999999999999999997 7753 6665 666666544322111 1
Q ss_pred cc--eEEcCch---hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC---hHHHHHHhhccccccccccCCCC
Q psy16512 171 NQ--IYSFSVD---DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSN 242 (815)
Q Consensus 171 ~g--~v~~~~~---~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~g 242 (815)
.+ +.+++.+ ..++++.++ +.+++++|++++++||||.++| +++|.++|+ ++|
T Consensus 154 ~~~~~~~~~~~~~~~~~d~~~l~---------~~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~-----------~~~ 213 (417)
T 3g7q_A 154 ARPNIELLPEGQFKYHVDFEHLH---------IGEETGMICVSRPTNPTGNVITDEELMKLDRLAN-----------QHN 213 (417)
T ss_dssp CCCEEEEEGGGEEEEECCGGGCC---------CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHH-----------HTT
T ss_pred ccCcccccCCcccccccCHHHhc---------cccCceEEEECCCCCCCCCccCHHHHHHHHHHHH-----------HcC
Confidence 12 3333332 124444443 2467999999999999999999 555666666 899
Q ss_pred eEEEEecccccCCCC-----CCCCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCccc
Q psy16512 243 CFVLLDAATYCGSNM-----LDLKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFH 315 (815)
Q Consensus 243 i~vivD~a~~~g~~~-----~dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~ 315 (815)
+++|+|++++.+... ......+.++++.|+|| ++ ++| +|+++.++++++.+....
T Consensus 214 ~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK-~~-~~G~r~G~~~~~~~~~~~~~~~~---------------- 275 (417)
T 3g7q_A 214 IPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSK-LG-LPGSRCGIIIANDKTITAIANMN---------------- 275 (417)
T ss_dssp CCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGG-GT-CTTSCCEEEECCHHHHHHHHHHH----------------
T ss_pred CEEEEeCCCccccccccccccccCCCCCEEEEEechh-cc-CCCcceEEEEeCHHHHHHHHHhh----------------
Confidence 999999998743211 11122356789999999 45 446 899998887776553221
Q ss_pred ccccCccccccCCCCChhHHHHHHHHHHHH---HhhhhhH-HHHHHHHHHHHHHHHhccccCCCC--cEEEcCCCCCCCC
Q psy16512 316 IKKDGLFEKFEDGTVNYLAIISLKYGFDTM---EKKRKSF-TNAFELSQYTYFYFKQLSYSNGQP--LVELYHDTDYGES 389 (815)
Q Consensus 316 ~~~~~~~~~~~~gt~~~~~~~al~~al~~l---~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p--~~~l~~~~~~~~~ 389 (815)
.....+.+..+..++...++.. ......+ ++.+++++.+.+.|.+.. + ++++..+..
T Consensus 276 --------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~~~~~~~~---- 338 (417)
T 3g7q_A 276 --------GIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYL-----SEERCLIHKPEG---- 338 (417)
T ss_dssp --------HHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHC-----CTTTCEEECCCB----
T ss_pred --------cceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccCCceeeCCCc----
Confidence 1111233445555554444321 1111112 556677777777776521 2 356665543
Q ss_pred CcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCce
Q psy16512 390 KYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTG 469 (815)
Q Consensus 390 ~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g 469 (815)
+.++++.++... ++..++.+.|.++||.+++|..|.++.... . +...+
T Consensus 339 ---g~~~~~~~~~~~---~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~---~-----------------------~~~~~ 386 (417)
T 3g7q_A 339 ---AIFLWLWFKDLP---ITTELLYQRLKARGVLMVPGHYFFPGLDKP---W-----------------------PHTHQ 386 (417)
T ss_dssp ---SSEEEEECTTCS---SCHHHHHHHHHHTTEECEEGGGGCTTBSSC---C-----------------------GGGGG
T ss_pred ---ceEEEEEcCCCC---CCHHHHHHHHHHCCEEEECchhhCCCCccc---c-----------------------ccCCC
Confidence 667777776411 234468888899999999998775432100 0 00137
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 470 SIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 470 ~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
++|+|++. +++++++++++|.+++.+
T Consensus 387 ~iRis~~~--~~~~i~~~~~~l~~~l~~ 412 (417)
T 3g7q_A 387 CMRMNYVP--EPDKIEAGVKILAEEIER 412 (417)
T ss_dssp EEEEESCS--CHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 99999985 899999999999987753
No 148
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.87 E-value=5.7e-21 Score=212.53 Aligned_cols=323 Identities=12% Similarity=0.131 Sum_probs=216.9
Q ss_pred hhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchh
Q psy16512 62 ICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATS 135 (815)
Q Consensus 62 ~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~ 135 (815)
..|+|.... +..++.+.+++.+.+.... +..+.+ .... .+++++++++++++++++ +++|+|+++
T Consensus 45 ~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~--~~~~~~-~~~~----~~~l~~~la~~~~~~~~~--v~~~~gg~~ 115 (395)
T 1vef_A 45 NEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLM--AMPQTL-PTPM----RGEFYRTLTAILPPELNR--VFPVNSGTE 115 (395)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCC--CCCTTS-CCHH----HHHHHHHHHHTSCTTEEE--EEEESSHHH
T ss_pred CEEEEccCccccccCCCCCHHHHHHHHHHHHhCC--CCcccc-CCHH----HHHHHHHHHHhcCCCcCE--EEEcCcHHH
Confidence 456665432 3467888888877765422 211111 2233 789999999999886665 999999999
Q ss_pred hHHHHHhhhc-cCCCc-EEEecCCCcc-hhhHHHHhhccc----eEEcCchh----hhcchhhhhhhhhhhhhcCCCccE
Q psy16512 136 AIKTVSEYFE-FNEGS-FIYLTDNHTS-VLGMRELVKTNQ----IYSFSVDD----ARNMLNEFKESQENVENMRHSNSL 204 (815)
Q Consensus 136 al~~~~~al~-~~~gd-vv~~~~~h~s-~~~~~~~~~~~g----~v~~~~~~----~~~~~~~~~~l~~~~~~~~~~t~l 204 (815)
|+.+++.++. +.+|+ +|+....|++ +..+....+... +.++..+. ..+++.+++ .+++++++
T Consensus 116 a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~-------~i~~~~~~ 188 (395)
T 1vef_A 116 ANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKR-------AVDEETAA 188 (395)
T ss_dssp HHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHH-------HCCTTEEE
T ss_pred HHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHH-------HhccCEEE
Confidence 9999998762 13455 8877776654 444444332221 11221110 124445544 33467899
Q ss_pred EEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC----CCCCCCCCCcEEEEccccc
Q psy16512 205 FVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN----MLDLKQHQPDFISISFYKM 275 (815)
Q Consensus 205 v~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~----~~dl~~~~~D~vv~S~~K~ 275 (815)
|++++++|+||.+.| +++|.++|+ ++|+++|+|++++ ++.. +++.....+|++ |+||+
T Consensus 189 v~~~~~~~~tG~~~~~~~~l~~i~~l~~-----------~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~ 255 (395)
T 1vef_A 189 VILEPVQGEGGVRPATPEFLRAAREITQ-----------EKGALLILDEIQTGMGRTGKRFAFEHFGIVPDIL--TLAKA 255 (395)
T ss_dssp EEECSEETTTTSEECCHHHHHHHHHHHH-----------HHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGG
T ss_pred EEEeCccCCCCccCCCHHHHHHHHHHHH-----------HcCCEEEEEecccCCccCCchhHhhhcCCCCCEE--EEccc
Confidence 999988999999988 899999999 8999999999988 3211 111223357866 78999
Q ss_pred cccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHH
Q psy16512 276 FGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNA 355 (815)
Q Consensus 276 ~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~ 355 (815)
++++.++|++++++++++.+.+.. .....+.+..++.++.++++.+.. ....++.
T Consensus 256 ~~~g~~~G~~~~~~~~~~~l~~~~------------------------~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~ 310 (395)
T 1vef_A 256 LGGGVPLGVAVMREEVARSMPKGG------------------------HGTTFGGNPLAMAAGVAAIRYLER-TRLWERA 310 (395)
T ss_dssp GGTTSSCEEEEEEHHHHHTSCTTS------------------------SCCSSTTCHHHHHHHHHHHHHHHH-HTTHHHH
T ss_pred ccCCCceEEEEehHHHHhhhccCC------------------------cCCCcCCCHHHHHHHHHHHHHHHh-CCHHHHH
Confidence 995456899999988766554310 011225677777778788887765 2233889
Q ss_pred HHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhh-cCCcEeccCccCCchh
Q psy16512 356 FELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN-LKKIQLRTGCHCNPGS 434 (815)
Q Consensus 356 ~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~-~~gI~v~~g~~~~~~~ 434 (815)
+++++++.+.|+++.. +.+... ...++++++.++.. . .++.+.|. ++||.++++.
T Consensus 311 ~~~~~~l~~~l~~~~~----~~~~~~--------~~~g~~~~~~~~~~-~-----~~l~~~l~~~~gi~v~~~~------ 366 (395)
T 1vef_A 311 AELGPWFMEKLRAIPS----PKIREV--------RGMGLMVGLELKEK-A-----APYIARLEKEHRVLALQAG------ 366 (395)
T ss_dssp HHHHHHHHHHHHTSCC----TTEEEE--------EEETTEEEEEESSC-S-----HHHHHHHHHHHCEECEESS------
T ss_pred HHHHHHHHHHHHHhhc----CceEEE--------EEEEEEEEEEEcCh-H-----HHHHHHHHHHCCeEEecCC------
Confidence 9999999999988621 212211 12367888887642 2 24777777 8999987631
Q ss_pred hhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 435 CQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 435 ~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.+++|++++++++++++++++++|++++
T Consensus 367 ---------------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 367 ---------------------------------PTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp ---------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ---------------------------------CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 2789999999999999999999999875
No 149
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.87 E-value=9.4e-22 Score=221.57 Aligned_cols=295 Identities=14% Similarity=0.106 Sum_probs=204.0
Q ss_pred HHHHHHHHHhHc-----CCCCCce-eEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhc-cc----eE
Q psy16512 107 IDQMRTKILQYF-----NTDSDHY-SVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKT-NQ----IY 174 (815)
Q Consensus 107 ~~~~r~~la~~~-----g~~~~~~-~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~-~g----~v 174 (815)
..++|+.+++++ +++++++ .|++|+|+++|+.+++.++. ++|| |++..+.|+++... +.. .| .+
T Consensus 90 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~y~~~~~~---~~~~~g~~~~~~ 165 (430)
T 2x5f_A 90 IEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFV-NQDDTILLPEHNWGNYKLV---FNTRNGANLQTY 165 (430)
T ss_dssp CHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHC-CTTCEEEEESSCCTHHHHH---HTTTTCCEEEEE
T ss_pred CHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHh-CCCCEEEEcCCcCccHHHH---HHHhcCCeEEEE
Confidence 678899999998 7766421 28999999999999999997 8999 88888777766443 333 44 44
Q ss_pred EcCch-hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC---hHHHHHHhhccccccccccCC-----CCeEE
Q psy16512 175 SFSVD-DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP---LSWCNTVHRNHVFKKHFKCSR-----SNCFV 245 (815)
Q Consensus 175 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~-----~gi~v 245 (815)
+.+.+ ..++++.++++++ ...++++++++++++||||.++| +++|.++|+ + +|+++
T Consensus 166 ~~~~~~~~~d~~~l~~~l~----~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~-----------~~~~~~~~~~l 230 (430)
T 2x5f_A 166 PIFDKDGHYTTDSLVEALQ----SYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIK-----------ALANKGTKVIA 230 (430)
T ss_dssp CCBCTTSCBCSHHHHHHHH----HCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHH-----------HHHHTTCEEEE
T ss_pred eccCccCCcCHHHHHHHHH----hcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHH-----------hhhhccCCEEE
Confidence 44432 3567777766553 11236899999999999999999 566677777 8 99999
Q ss_pred EEecccccCCC----CC----CCCC-CCC---cEEEEccccccccCCc--ceEEEE---ecccccccCcccccCceEEEE
Q psy16512 246 LLDAATYCGSN----ML----DLKQ-HQP---DFISISFYKMFGYPTG--LGALIV---KQKSAHVLNKTFYGGGTVKIS 308 (815)
Q Consensus 246 ivD~a~~~g~~----~~----dl~~-~~~---D~vv~S~~K~~g~p~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~ 308 (815)
|+|++++.... .. ++.. .+. ++++.|+||+|| ++| +|++++ ++++++.+......
T Consensus 231 i~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~riG~~~~~~~~~~~~~~l~~~~~~------- 302 (430)
T 2x5f_A 231 VVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFF-AWGFRVGFMTFGTSDQTTKEVLEAKVKG------- 302 (430)
T ss_dssp EEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTT-CGGGCCEEEEEBCCCHHHHHHHHHHHHH-------
T ss_pred EEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCC-CCCCCeEEEEEecCCHHHHHHHHHHHhh-------
Confidence 99999874321 11 2222 344 678899999998 557 799999 87776655322100
Q ss_pred ecCCcccccccCccccccCCCCChhHHHHHHHHHH----HHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCC
Q psy16512 309 MANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFD----TMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDT 384 (815)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~----~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~ 384 (815)
..+...++.+.+...++.++++ +...+....++++++++++.+.|++... ..++++..+.
T Consensus 303 -------------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~g~~~~~~~ 366 (430)
T 2x5f_A 303 -------------LIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQY---HSHWQAYDFN 366 (430)
T ss_dssp -------------HHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGG---TTTEEECCCC
T ss_pred -------------hhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CCCceeeCCC
Confidence 0011234677788888878877 3333222237778888888888873200 0157776543
Q ss_pred CCCCCCcccceEEEEEecCCCCccCHHHHHHhhhc-CCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCccccc
Q psy16512 385 DYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANL-KKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDII 463 (815)
Q Consensus 385 ~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~-~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~ 463 (815)
. +.++++.+++ .+..++.+.|.+ +||.+++|.
T Consensus 367 ~-------g~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~----------------------------------- 399 (430)
T 2x5f_A 367 S-------GYFMAIKVHD-----VDPEALRKHLIDKYSIGVIALN----------------------------------- 399 (430)
T ss_dssp B-------SSEEEEEESS-----SCHHHHHHHHHHHHCEECEECS-----------------------------------
T ss_pred c-------eEEEEeCCCC-----CCHHHHHHHHHHhCCEEEecCC-----------------------------------
Confidence 2 4567777762 233457777776 999998750
Q ss_pred CCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 464 DGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 464 ~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+++|+|++. .+++++++++++|++++.
T Consensus 400 ----~~~iRis~~~-~~~e~i~~~~~~l~~~l~ 427 (430)
T 2x5f_A 400 ----ATDIRIAFSC-VEKDDIPHVFDSIAKAID 427 (430)
T ss_dssp ----SSEEEEEGGG-SCGGGHHHHHHHHHHHHH
T ss_pred ----CCeEEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 2789999995 589999999999998764
No 150
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.87 E-value=1.7e-20 Score=208.42 Aligned_cols=349 Identities=11% Similarity=0.137 Sum_probs=216.4
Q ss_pred ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhh-----
Q psy16512 70 AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYF----- 144 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al----- 144 (815)
...+++++.+++.+.+....+. + ... ..++++.+++++|++ + +++++|+|+|+.+++.++
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~-~------~~~----~~~l~~~la~~~~~~--~--~i~~~sGt~a~~~al~~~~~~~~ 74 (390)
T 3b8x_A 10 SSTWDDLEYKAIQSVLDSKMFT-M------GEY----VKQYETQFAKTFGSK--Y--AVMVSSGSTANLLMIAALFFTKK 74 (390)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCS-S------CHH----HHHHHHHHHHHHTCS--E--EEEESCHHHHHHHHHHHTTSSSS
T ss_pred CCCCCHHHHHHHHHHHHcCCCC-C------ChH----HHHHHHHHHHHHCCC--c--EEEECCHHHHHHHHHHHHHhhhh
Confidence 3456778888877766542211 1 233 889999999999986 2 788888889999999998
Q ss_pred -ccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch-hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccCh
Q psy16512 145 -EFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD-DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPL 220 (815)
Q Consensus 145 -~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l 220 (815)
..++|| |+++..+|+++.......+... .++++++ ..++++.+++++ ++++++|+++ |++|...|+
T Consensus 75 ~~~~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i-------~~~~~~v~~~---~~~g~~~~~ 144 (390)
T 3b8x_A 75 PRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAV-------TDSTKAILTV---NLLGNPNNF 144 (390)
T ss_dssp CSCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHC-------CTTEEEEEEE---CGGGCCCCH
T ss_pred cCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHh-------CcCCeEEEEE---CCccChhhH
Confidence 237888 9999999998876554432222 5555544 456777766544 4678999987 467889999
Q ss_pred HHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCC--cEEEEcc--ccccccCCcceEEEEec-cccccc
Q psy16512 221 SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQP--DFISISF--YKMFGYPTGLGALIVKQ-KSAHVL 295 (815)
Q Consensus 221 ~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~--D~vv~S~--~K~~g~p~G~G~l~~~~-~~~~~l 295 (815)
++|.++|+ ++|+++|+|++|+.|... +...++. |+.++|+ +|.++++.| |+++.++ ++.+.+
T Consensus 145 ~~i~~l~~-----------~~~~~li~D~a~~~g~~~-~~~~~g~~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~~~~ 211 (390)
T 3b8x_A 145 DEINKIIG-----------GRDIILLEDNCESMGATF-NNKCAGTFGLMGTFSSFYSNHIATMEG-GCIVTDDEEIYHIL 211 (390)
T ss_dssp HHHHHHHT-----------TSCCEEEEECTTCTTCEE-TTEETTSSSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHH
T ss_pred HHHHHHHH-----------HcCCEEEEECcCcccCEE-CCcccccccceEEEEccCCCCCccCCc-eEEEeCCHHHHHHH
Confidence 99999999 899999999999988654 4444443 6666553 344443445 8888886 454444
Q ss_pred CcccccC--ce---EE---EEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q psy16512 296 NKTFYGG--GT---VK---ISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFK 367 (815)
Q Consensus 296 ~~~~~g~--~~---~~---~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~ 367 (815)
++...++ .. .. .......+...+......+..++.+..+.+++.. ++.+. ...++.+++++++.+.|+
T Consensus 212 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~-l~~l~---~~~~~~~~~~~~l~~~L~ 287 (390)
T 3b8x_A 212 LCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQ-LKKLP---RFISVRRKNAEYFLDKFK 287 (390)
T ss_dssp HHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHhc
Confidence 4332222 00 00 0000000000000000112233555555555533 44433 234788899999999998
Q ss_pred hccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEecc---CccCCc-hhhhh--h---
Q psy16512 368 QLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRT---GCHCNP-GSCQR--F--- 438 (815)
Q Consensus 368 ~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~---g~~~~~-~~~~~--~--- 438 (815)
++ |++++..+.. ......+.+.+.... ..+..++.+.|.++||.++. |+.|.. +.... +
T Consensus 288 ~~------~~~~~~~~~~----~~~~~~~~i~~~~~~--~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 355 (390)
T 3b8x_A 288 DH------PYLDVQQETG----ESSWFGFSFIIKKDS--GVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVH 355 (390)
T ss_dssp TC------SSEEECCCCS----BCCCCEEEEEECTTS--CCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEES
T ss_pred CC------CCcccCCCCC----CcccEEEEEEecCcC--cccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCc
Confidence 87 7888875421 111123444554211 12345688899999999997 555655 43221 0
Q ss_pred cCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHH
Q psy16512 439 LGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFL 491 (815)
Q Consensus 439 ~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L 491 (815)
..+...+. ...+.||++++.++|++||++++++|
T Consensus 356 ~~~~~~~~-------------------~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 356 NNVDNAEY-------------------LDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp SCCHHHHH-------------------HHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred CCChHHHH-------------------HhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 01111110 11368999999999999999999986
No 151
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.87 E-value=3.3e-21 Score=214.19 Aligned_cols=354 Identities=13% Similarity=0.041 Sum_probs=216.5
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-E
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-F 151 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-v 151 (815)
.++.+.+++.+.+....+. + ... ..++++.+++++|.+ + +++++|+++|+.+++.++..++|| |
T Consensus 18 ~~~~~~~a~~~~~~~~~~~-~------~~~----~~~l~~~la~~~~~~--~--~~~~~~gt~al~~~~~~~~~~~gd~V 82 (393)
T 1mdo_A 18 MGAEELAAVKTVLDSGWIT-T------GPK----NQELEAAFCRLTGNQ--Y--AVAVSSATAGMHIALMALGIGEGDEV 82 (393)
T ss_dssp CCHHHHHHHHHHHHHTCCS-S------SHH----HHHHHHHHHHHHCCS--E--EEEESCHHHHHHHHHHHTTCCTTCEE
T ss_pred CCHHHHHHHHHHHhcCCcC-C------ChH----HHHHHHHHHHHhCCC--c--EEEecChHHHHHHHHHHcCCCCCCEE
Confidence 4566777776666442221 1 133 789999999999975 3 899999999999999999338898 8
Q ss_pred EEecCCCcchhhHHHHhhccc-eEEcCch-hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhc
Q psy16512 152 IYLTDNHTSVLGMRELVKTNQ-IYSFSVD-DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRN 229 (815)
Q Consensus 152 v~~~~~h~s~~~~~~~~~~~g-~v~~~~~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~ 229 (815)
+++..+|+++.......+... .++++++ ..++++.+++++ .+++++|+++ |+||...|+++|.++|+
T Consensus 83 l~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l-------~~~~~~v~~~---~~~G~~~~~~~i~~l~~- 151 (393)
T 1mdo_A 83 ITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAI-------TPQTKAIIPV---HYAGAPADLDAIYALGE- 151 (393)
T ss_dssp EEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHC-------CTTEEEECCB---CGGGCCCCHHHHHHHHH-
T ss_pred EeCCCccHhHHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhc-------CCCceEEEEe---CCCCCcCCHHHHHHHHH-
Confidence 999989988765444332222 4555543 246666666543 3578888875 58999999999999999
Q ss_pred cccccccccCCCCeEEEEecccccCCCCCCCCCCC-CcEEEEccc--cccccCCcceEEEEe-cccccccCcccccCceE
Q psy16512 230 HVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQ-PDFISISFY--KMFGYPTGLGALIVK-QKSAHVLNKTFYGGGTV 305 (815)
Q Consensus 230 ~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~-~D~vv~S~~--K~~g~p~G~G~l~~~-~~~~~~l~~~~~g~~~~ 305 (815)
++|+++|+|++++.|... +...++ .|++++|+| |+++ +...|+++.+ +++++.+.+....+...
T Consensus 152 ----------~~~~~li~D~a~~~g~~~-~~~~~~~~d~~~~S~~k~K~l~-~~~~g~~~~~~~~~~~~l~~~~~~~~~~ 219 (393)
T 1mdo_A 152 ----------RYGIPVIEDAAHATGTSY-KGRHIGARGTAIFSFHAIKNIT-CAEGGIVVTDNPQFADKLRSLKFHGLGV 219 (393)
T ss_dssp ----------HHTCCBCEECTTCTTCEE-TTEETTSSSEEEEECCTTSSSC-SSSCEEEEESCHHHHHHHHHHTBTTEEC
T ss_pred ----------HcCCeEEEECccccCCeE-CCeecCCCCeEEEeCCCCCccc-cccceEEEeCCHHHHHHHHHHHhcCCcc
Confidence 899999999999876532 222234 899999999 8887 3336888886 56666554432222211
Q ss_pred EEEecCCcccccccCccccc---cCCC-CChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEc
Q psy16512 306 KISMANENFHIKKDGLFEKF---EDGT-VNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELY 381 (815)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~---~~gt-~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~ 381 (815)
.....+. ...+..+ +.|+ .....+ ++..++..+..+....++.+++++++.+.|.++ + ++++
T Consensus 220 ---~~~~~~~---~~~~~~~~~~~~g~~~~~~~~-~~a~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~------~-~~~~ 285 (393)
T 1mdo_A 220 ---DAWDRQS---GGRAPQAEVLAPGYKYNLPDL-NAAIALAQLQKLDALNARRAAIAAQYHQAMADL------P-FQPL 285 (393)
T ss_dssp ---C--------------CCEESSCCCBCCCCHH-HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTS------S-CEEC
T ss_pred ---cchhhhc---ccccccccccccCccCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------C-cccc
Confidence 0011100 0001111 2333 111222 122222333333223377778899999999887 4 6765
Q ss_pred CCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcC-----CCHHHHHHHhhcCCcc
Q psy16512 382 HDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLG-----LSDITIKFHFQQGHIC 456 (815)
Q Consensus 382 ~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~c 456 (815)
..... .....+.++++.++... ...+..++.+.|.++||.++.|..|.+.......+ +...+
T Consensus 286 ~~~~~-~~~~~~~~~~v~~~~~~-~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 352 (393)
T 1mdo_A 286 SLPSW-EHIHAWHLFIIRVDEAR-CGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTE----------- 352 (393)
T ss_dssp CCCSS-CEECCCSCEEEECCHHH-HSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHH-----------
T ss_pred cCCCC-CCCceeEEEEEEecccc-cccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHH-----------
Confidence 32100 00122457777775200 00233468888989999999987663221000000 00000
Q ss_pred CCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhcC
Q psy16512 457 GDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQA 499 (815)
Q Consensus 457 ~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~~ 499 (815)
....+.+|++++.++|++|+++++++|++++...+
T Consensus 353 --------~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~~ 387 (393)
T 1mdo_A 353 --------WNSERICSLPLFPDMTESDFDRVITALHQIAGQGS 387 (393)
T ss_dssp --------HHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC---
T ss_pred --------HHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 00125899999999999999999999999876554
No 152
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.87 E-value=1e-21 Score=219.32 Aligned_cols=336 Identities=11% Similarity=0.060 Sum_probs=221.2
Q ss_pred ccccchhhHHHHHHHHhh-ccccCCCChhhhhhhhhhhHH-HHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccC
Q psy16512 70 AGVYSQSQMNQTIEQLKE-NIFSHPHGNSVLSDFCVSEID-QMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFN 147 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~-~~~~np~s~~~~~~~~~~~~~-~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~ 147 (815)
..+.++.+.+++.+.+.. ....+|++............+ .+|+++++++|++++. +++++ +++|+.+++.++. +
T Consensus 32 ~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~--i~~~s-Gt~a~~~~~~~~~-~ 107 (407)
T 2dkj_A 32 ENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWAN--VQPHS-GSQANMAVYMALM-E 107 (407)
T ss_dssp CCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEE--CCCSS-HHHHHHHHHHHHC-C
T ss_pred CCCCCHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcce--EEecc-hHHHHHHHHHHhc-C
Confidence 344478888888776643 222334322100000000133 4678999999997643 44555 4669999999996 8
Q ss_pred CCc-EEEecCCCcchh---hHHHHhhccc-eEEc--Cc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC
Q psy16512 148 EGS-FIYLTDNHTSVL---GMRELVKTNQ-IYSF--SV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP 219 (815)
Q Consensus 148 ~gd-vv~~~~~h~s~~---~~~~~~~~~g-~v~~--~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~ 219 (815)
+|| |+++..+|+++. ......+... .+++ ++ +..++++.++++++ .+++++|++++++|+ ...|
T Consensus 108 ~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~------~~~~~~v~~~~p~~~--~~~~ 179 (407)
T 2dkj_A 108 PGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLAL------EHRPKVIVAGASAYP--RFWD 179 (407)
T ss_dssp TTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHH------HHCCSEEEECCSSCC--SCCC
T ss_pred CCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHh------hcCCeEEEEeccccC--CCCC
Confidence 998 888888888874 2222222211 3343 32 34567777766443 126899999888886 7889
Q ss_pred hHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCC---CCCCcEEEEccccccccCCcceEEEEe-ccccccc
Q psy16512 220 LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLK---QHQPDFISISFYKMFGYPTGLGALIVK-QKSAHVL 295 (815)
Q Consensus 220 l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~---~~~~D~vv~S~~K~~g~p~G~G~l~~~-~~~~~~l 295 (815)
+++|.++|+ ++|+++|+|++++.|....+.. ...+|+++.|+||+++++.| |+++++ +++++.+
T Consensus 180 l~~i~~l~~-----------~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~l 247 (407)
T 2dkj_A 180 FKAFREIAD-----------EVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRG-GLILSNDPELGKRI 247 (407)
T ss_dssp HHHHHHHHH-----------HHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSC-EEEEESCHHHHHHH
T ss_pred HHHHHHHHH-----------HcCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCc-eEEEECCHHHHHHH
Confidence 999999999 8999999999987643211111 01379999999998877776 999998 5776555
Q ss_pred CcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh-hh-HHHHHHHHHHHHHHHHhccccC
Q psy16512 296 NKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-KS-FTNAFELSQYTYFYFKQLSYSN 373 (815)
Q Consensus 296 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-~~-~~~~~~l~~~l~~~L~~l~~~~ 373 (815)
.+... .+..++++...+.++.++++.+...+ .. .++..++++++.+.|+++
T Consensus 248 ~~~~~-----------------------~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---- 300 (407)
T 2dkj_A 248 DKLIF-----------------------PGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR---- 300 (407)
T ss_dssp HHHHT-----------------------TTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred Hhhhc-----------------------ccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC----
Confidence 33211 12235667766767777887754222 22 388899999999999887
Q ss_pred CCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcC
Q psy16512 374 GQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQG 453 (815)
Q Consensus 374 ~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~ 453 (815)
+++++.+. ..++++++.++... .+..++.+.|.++||.+++|..+... . +
T Consensus 301 ---g~~~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~~~~~~~~--~---~------------- 350 (407)
T 2dkj_A 301 ---GYRIVTGG------TDNHLFLVDLRPKG---LTGKEAEERLDAVGITVNKNAIPFDP--K---P------------- 350 (407)
T ss_dssp ---TCEEGGGS------CSSSEEEEECGGGT---CCHHHHHHHHHHTTEECEECCCTTCS--S---C-------------
T ss_pred ---CceeecCC------CCceEEEEECcccC---CCHHHHHHHHHHcCceecCCcCcccc--c---c-------------
Confidence 56776532 13788888876421 23446888889999999987532100 0 0
Q ss_pred CccCCcccccCCCCceEEEEeccCC----CCHHHHHHHHHHHHHHHhh
Q psy16512 454 HICGDDKDIIDGKPTGSIRISYGHA----SNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 454 ~~c~~~~~~~~~~~~g~iRvs~g~~----~t~edi~~lv~~L~~~~~~ 497 (815)
....+++|+|++.+ .+++|+++++++|++++.+
T Consensus 351 -----------~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 351 -----------PRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp -----------TTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred -----------ccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 00136899999764 6899999999999998877
No 153
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.87 E-value=4e-21 Score=217.48 Aligned_cols=354 Identities=11% Similarity=0.050 Sum_probs=213.7
Q ss_pred hcccccchhhHHHHHHHHhhcc-ccCCCChhhhhhhhhhhHH-HHHHHHHhHcCCCCCce-eEEecCCchhhHHHHHhhh
Q psy16512 68 TGAGVYSQSQMNQTIEQLKENI-FSHPHGNSVLSDFCVSEID-QMRTKILQYFNTDSDHY-SVIFTSGATSAIKTVSEYF 144 (815)
Q Consensus 68 a~~~~~p~~v~~al~~~l~~~~-~~np~s~~~~~~~~~~~~~-~~r~~la~~~g~~~~~~-~iv~t~g~t~al~~~~~al 144 (815)
++....++.+++++...+.+.. .++|++.+........+++ .++++++++||++.+++ ..++++|+|+|+.+++.++
T Consensus 61 as~n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al 140 (490)
T 2a7v_A 61 ASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL 140 (490)
T ss_dssp TTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHH
Confidence 3455678999999877665432 3677654222211112244 67799999999988654 2466778899999999999
Q ss_pred ccCCCc-EEEecCCCcchhh--H------HHHhhccc-eEE--cC-chhhhcchhhhhhhhhhhhhcCCCccEEEEeccc
Q psy16512 145 EFNEGS-FIYLTDNHTSVLG--M------RELVKTNQ-IYS--FS-VDDARNMLNEFKESQENVENMRHSNSLFVYPAES 211 (815)
Q Consensus 145 ~~~~gd-vv~~~~~h~s~~~--~------~~~~~~~g-~v~--~~-~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~ 211 (815)
. ++|| |++...+|.+... . ....+..- .++ ++ .++.+|++.+++++. ..++++|++..++
T Consensus 141 ~-~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~------~~~~klIi~~~s~ 213 (490)
T 2a7v_A 141 L-QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTAR------LFRPRLIIAGTSA 213 (490)
T ss_dssp C-CSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHH------HHCCSEEEECCSS
T ss_pred c-CCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHh------hcCCcEEEEcCCC
Confidence 8 9999 7777777755321 1 11222111 233 33 245778888877553 1357899887777
Q ss_pred CCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC-----CCCCCCCCCCcEEEEccccccccCCcceEEE
Q psy16512 212 NFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS-----NMLDLKQHQPDFISISFYKMFGYPTGLGALI 286 (815)
Q Consensus 212 n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~-----~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~ 286 (815)
|+ ...|+++|.++|+ ++|+++++|++|+.|. .+.++. ++|++++|+||+|++|.| |+++
T Consensus 214 ~~--~~~dl~~i~~ia~-----------~~g~~livD~Ah~~glv~~g~~~~~~~--~aDiv~~S~hK~l~Gp~G-G~i~ 277 (490)
T 2a7v_A 214 YA--RLIDYARMREVCD-----------EVKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGARS-GLIF 277 (490)
T ss_dssp CC--SCCCHHHHHHHHH-----------HTTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSGGGCSCSC-EEEE
T ss_pred CC--CcccHHHHHHHHH-----------HcCCEEEEccccccccccCCcCCCCCC--CCCEEEECCcccCccccc-hhee
Confidence 65 5679999999999 8999999999987553 222232 589999999999877877 9999
Q ss_pred EecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHh-hhhhH-HHHHHHHHHHHH
Q psy16512 287 VKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK-KRKSF-TNAFELSQYTYF 364 (815)
Q Consensus 287 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~-~~~~~-~~~~~l~~~l~~ 364 (815)
++++... +.+. .+.... + .+.............|+++...++++..|+..... ....+ ++..++++++.+
T Consensus 278 ~~~~~~~-~~~~---~~~~~~---~-~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~ 349 (490)
T 2a7v_A 278 YRKGVKA-VDPK---TGREIP---Y-TFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMAD 349 (490)
T ss_dssp EECSEEE-EETT---TEEEEE---C-CCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred eccchhc-cccc---ccchhh---H-HHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 9876421 0000 000000 0 00000000000112356788888888888776542 22333 888999999999
Q ss_pred HHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHH
Q psy16512 365 YFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDI 444 (815)
Q Consensus 365 ~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~ 444 (815)
.|.+. ++++..+. ...+++.+.+... .++..++.+.|.+.||.+..+..+... +
T Consensus 350 ~L~~~-------G~~v~~~~------t~t~lv~vdl~~~---g~~~~~~~~~L~~~GI~v~~~~~p~d~---~------- 403 (490)
T 2a7v_A 350 ALLER-------GYSLVSGG------TDNHLVLVDLRPK---GLDGARAERVLELVSITANKNTCPGDR---S------- 403 (490)
T ss_dssp HHHHT-------TCEEGGGS------CSSSEEEEECTTT---TCCHHHHHHHHHHTTEECEEECCTTCC---C-------
T ss_pred HHHHc-------CcEEecCC------CCCeEEEEEeCCC---CCCHHHHHHHHHhCCeEEecCccCCCC---C-------
Confidence 99987 78887532 1256777776532 133456888999999999865322110 0
Q ss_pred HHHHHhhcCCccCCcccccCCCCceEEEEeccC----CCCHHHHHHHHHHHHHHHhhc
Q psy16512 445 TIKFHFQQGHICGDDKDIIDGKPTGSIRISYGH----ASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 445 ~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~----~~t~edi~~lv~~L~~~~~~~ 498 (815)
...++.||++... ..+++|+++++++|.+++...
T Consensus 404 --------------------p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~~ 441 (490)
T 2a7v_A 404 --------------------AITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIG 441 (490)
T ss_dssp --------------------SSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --------------------CCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence 0113679997643 358999999999999987643
No 154
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.86 E-value=1.4e-20 Score=209.13 Aligned_cols=345 Identities=13% Similarity=0.057 Sum_probs=212.4
Q ss_pred cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc
Q psy16512 71 GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS 150 (815)
Q Consensus 71 ~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd 150 (815)
...++.+.+++.+.+....+.++ ... ..++++.+++++|.+ + +++++|+|+|+.+++.++..++||
T Consensus 32 p~~~~~~~~a~~~~~~~~~~~~~------~~~----~~~l~~~la~~~~~~--~--~i~~~~gt~al~~~l~~~~~~~gd 97 (391)
T 3dr4_A 32 PRLDGNERDYVLECMDTTWISSV------GRF----IVEFEKAFADYCGVK--H--AIACNNGTTALHLALVAMGIGPGD 97 (391)
T ss_dssp CCCCSSHHHHHHHHHHHTCCSSC------SHH----HHHHHHHHHHHHTCS--E--EEEESSHHHHHHHHHHHHTCCTTC
T ss_pred CCCCHHHHHHHHHHHHcCCccCC------ChH----HHHHHHHHHHHhCCC--c--EEEeCCHHHHHHHHHHHcCCCCcC
Confidence 34567777777766654333211 233 789999999999986 3 899999999999999999338898
Q ss_pred -EEEecCCCcchhhHHHHhhccc-eEEcCc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHh
Q psy16512 151 -FIYLTDNHTSVLGMRELVKTNQ-IYSFSV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVH 227 (815)
Q Consensus 151 -vv~~~~~h~s~~~~~~~~~~~g-~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~ 227 (815)
|+++..+|+++.......+... .+++++ +..++++.+++++ .+++++|+ ++||||...|+++|.++|
T Consensus 98 ~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~-------~~~~~~v~---~~n~tG~~~~~~~i~~l~ 167 (391)
T 3dr4_A 98 EVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALI-------TPRTKAIM---PVHLYGQICDMDPILEVA 167 (391)
T ss_dssp EEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGSGGGC-------CTTEEEEC---CBCGGGCCCCHHHHHHHH
T ss_pred EEEECCCchHHHHHHHHHCCCEEEEEecCccccCcCHHHHHHhc-------CCCceEEE---EECCCCChhhHHHHHHHH
Confidence 9999999988766554433222 455553 3356777776644 46788887 468999999999999999
Q ss_pred hccccccccccCCCCeEEEEecccccCCCCCCCCC-CCCcEEEEccc--cccccCCcceEEEEecc-cccccCcccccCc
Q psy16512 228 RNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ-HQPDFISISFY--KMFGYPTGLGALIVKQK-SAHVLNKTFYGGG 303 (815)
Q Consensus 228 ~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~-~~~D~vv~S~~--K~~g~p~G~G~l~~~~~-~~~~l~~~~~g~~ 303 (815)
+ ++|+++|+|++++.|....+... .-.|+.++||+ |++++ ...|+++.+++ +.+.+++...++.
T Consensus 168 ~-----------~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S~s~~K~l~~-g~gg~~~~~~~~~~~~~~~~~~~g~ 235 (391)
T 3dr4_A 168 R-----------RHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAIITT-GEGGMITTNDDDLAAKMRLLRGQGM 235 (391)
T ss_dssp H-----------HTTCEEEEECTTCTTCEETTEETTSSSSEEEEECBTTSSSCC-BSCEEEEESCHHHHHHHHHHHBTTC
T ss_pred H-----------HcCCEEEEECcccccceECCeeecccCCEEEEECCCCCcCCc-CCeEEEEECCHHHHHHHHHHHhcCC
Confidence 9 89999999999988764333211 11477777755 99883 23677777654 4444433322221
Q ss_pred eEEEEecCCcccccccCccccccCCC-CChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcC
Q psy16512 304 TVKISMANENFHIKKDGLFEKFEDGT-VNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYH 382 (815)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~gt-~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~ 382 (815)
.. ...+. ....|. .....+.++ .++..+..+....++.+++++++.+.|.++ +++++.
T Consensus 236 ~~-----~~~~~--------~~~~g~~~~~~~l~aa-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~ 294 (391)
T 3dr4_A 236 DP-----NRRYW--------FPIVGFNYRMTNIQAA-IGLAQLERVDEHLAARERVVGWYEQKLARL-------GNRVTK 294 (391)
T ss_dssp CT-----TSTTC--------CSSCCCBCBCCHHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHHHGGG-------TTSEEC
T ss_pred CC-----CCccc--------ccccccccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CccccC
Confidence 10 00000 000111 111122111 222222222222377888899999999876 344443
Q ss_pred C--CCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCc---cCCchhhhh-hcCCCHHHHHHHhhcCCcc
Q psy16512 383 D--TDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGC---HCNPGSCQR-FLGLSDITIKFHFQQGHIC 456 (815)
Q Consensus 383 ~--~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~---~~~~~~~~~-~~g~~~~~~~~~~~~~~~c 456 (815)
+ ... ......++.+.++... ..+..++.+.|.++||.+++|. +|.+..... ...+....
T Consensus 295 ~~~~~~--~~~~~~~~~i~~~~~~--~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~----------- 359 (391)
T 3dr4_A 295 PHVALT--GRHVFWMYTVRLGEGL--STTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAE----------- 359 (391)
T ss_dssp CCCCTT--SCCCCSSEEEEECSSC--SSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHH-----------
T ss_pred cCCCCC--CcceeEEEEEEECCcc--chhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHH-----------
Confidence 3 110 1122345666665421 2344568899999999999875 333322110 00010000
Q ss_pred CCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 457 GDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 457 ~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
....+.+|++++.++|++||++++++|++++
T Consensus 360 --------~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 360 --------ACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp --------HHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred --------HHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 0113689999999999999999999998754
No 155
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.86 E-value=2.1e-21 Score=213.94 Aligned_cols=339 Identities=11% Similarity=0.036 Sum_probs=208.4
Q ss_pred ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-
Q psy16512 72 VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS- 150 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd- 150 (815)
..++++.+++.+.+....+. + ... +.++++.+++++|.+ + +++++|+|+|+.+++.++..++||
T Consensus 13 ~~~~~v~~a~~~~~~~~~~~-~------~~~----~~~l~~~la~~~~~~--~--~~~~~sGt~al~~al~~~~~~~gd~ 77 (367)
T 3nyt_A 13 RIKDKIDAGIQRVLRHGQYI-L------GPE----VTELEDRLADFVGAK--Y--CISCANGTDALQIVQMALGVGPGDE 77 (367)
T ss_dssp HHHHHHHHHHHHHHHHCCCS-S------CHH----HHHHHHHHHHHHTCS--E--EEEESCHHHHHHHHHHHTTCCTTCE
T ss_pred ccCHHHHHHHHHHHhcCCcc-C------ChH----HHHHHHHHHHHhCCC--c--EEEeCCHHHHHHHHHHHhCCCCcCE
Confidence 44566777776655432221 1 123 789999999999986 3 899999999999999999448998
Q ss_pred EEEecCCCcchhhHHHHhhccc-eEEcCch-hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhh
Q psy16512 151 FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD-DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHR 228 (815)
Q Consensus 151 vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~ 228 (815)
|+++..+|+++.......+... .++++++ ..++++.+++++ ++++++|+ ++|++|...|+++|.++|+
T Consensus 78 Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i-------~~~~~~v~---~~~~~G~~~~~~~i~~la~ 147 (367)
T 3nyt_A 78 VITPGFTYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAI-------TPRTKAII---PVSLYGQCADFDAINAIAS 147 (367)
T ss_dssp EEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGTGGGC-------CTTEEEEC---CBCGGGCCCCHHHHHHHHH
T ss_pred EEECCCccHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHhc-------CcCCcEEE---eeCCccChhhHHHHHHHHH
Confidence 9999999988766554443222 5555554 456777777644 46788887 6789999999999999999
Q ss_pred ccccccccccCCCCeEEEEecccccCCCCCCCCCCCC--cEEEEcc--ccccccCCc-ceEEEEec-ccccccCcccccC
Q psy16512 229 NHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQP--DFISISF--YKMFGYPTG-LGALIVKQ-KSAHVLNKTFYGG 302 (815)
Q Consensus 229 ~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~--D~vv~S~--~K~~g~p~G-~G~l~~~~-~~~~~l~~~~~g~ 302 (815)
++|+++|+|++++.|.. .+....+. |++++|| ||+++ +.| .|+++.++ ++.+.+++....+
T Consensus 148 -----------~~~~~li~D~a~~~g~~-~~~~~~~~~~di~~~Sf~~~K~l~-~~g~gg~~~~~~~~l~~~~~~~~~~g 214 (367)
T 3nyt_A 148 -----------KYGIPVIEDAAQSFGAS-YKGKRSCNLSTVACTSFFPSAPLG-CYGDGGAIFTNDDELATAIRQIARHG 214 (367)
T ss_dssp -----------HTTCCBEEECTTTTTCE-ETTEETTSSSSEEEEECCTTSSSC-CSSCCEEEEESCHHHHHHHHHHTBTT
T ss_pred -----------HcCCEEEEECccccCCe-ECCeeccCCCCEEEEECCCCCcCC-CcCceeEEEeCCHHHHHHHHHHHhcC
Confidence 89999999999987754 22222222 9999997 89999 544 56777753 4544444332222
Q ss_pred ceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcC
Q psy16512 303 GTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYH 382 (815)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~ 382 (815)
.. . .+.. ....+ ....+....++.... +..+....++.+++++++.+.|+++ ++.+..
T Consensus 215 ~~-~---~~~~-------~~~g~-~~~~~~~~aa~~~~~---l~~~~~~~~~~~~~~~~~~~~L~~~-------~~~~~~ 272 (367)
T 3nyt_A 215 QD-R---RYHH-------IRVGV-NSRLDTLQAAILLPK---LEIFEEEIALRQKVAAEYDLSLKQV-------GIGTPF 272 (367)
T ss_dssp EE-E---TTEE-------CSCCC-BCCCCHHHHHHHHHH---HHTHHHHHHHHHHHHHHHHHHHHHT-------TCCCCC
T ss_pred CC-c---Ccee-------eccCc-CCCccHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhccC-------CeeccC
Confidence 11 0 0000 00000 112222333322233 3333223377788889999999887 233322
Q ss_pred CCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccc
Q psy16512 383 DTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDI 462 (815)
Q Consensus 383 ~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~ 462 (815)
... .......++.+.+. +...+.+.|.++||.++.+..+ +......+.-.. ....+
T Consensus 273 ~~~--~~~~~~~~~~~~~~-------~~~~l~~~L~~~GI~~~~~~~~-~~~~~~~~~~~~--------------~~~~~ 328 (367)
T 3nyt_A 273 IEV--NNISVYAQYTVRMD-------NRESVQASLKAAGVPTAVHYPI-PLNKQPAVADEK--------------AKLPV 328 (367)
T ss_dssp CCT--TEECCCSSEEEECS-------SHHHHHHHHHHHTCCCBCSCSS-CGGGSGGGCCTT--------------CCCHH
T ss_pred CCC--CCceeeEEEEEEeC-------CHHHHHHHHHHCCCceeccCCC-ccccChhhhccC--------------CCChH
Confidence 111 00111223333332 2345888999999999876431 212222221000 00000
Q ss_pred cCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 463 IDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 463 ~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
.+......+|++++...|++||++++++|++.
T Consensus 329 ~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 329 GDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp HHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred HHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 01112478999999999999999999999764
No 156
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.86 E-value=2.2e-21 Score=216.41 Aligned_cols=341 Identities=11% Similarity=0.053 Sum_probs=212.4
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-E
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-F 151 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-v 151 (815)
.++.+.+++.+.+....+. .... ..++++.+++++|.+ + +++++|+++|+.+++.++..++|| |
T Consensus 42 ~~~~v~~a~~~~~~~~~y~-------~~~~----~~~l~~~la~~~~~~--~--~v~~~~Gt~a~~~~l~~~~~~~gd~v 106 (399)
T 2oga_A 42 LRAETDAAIARVLDSGRYL-------LGPE----LEGFEAEFAAYCETD--H--AVGVNSGMDALQLALRGLGIGPGDEV 106 (399)
T ss_dssp THHHHHHHHHHHHHHTCCS-------SSHH----HHHHHHHHHHHTTSS--E--EEEESCHHHHHHHHHHHTTCCTTCEE
T ss_pred CCHHHHHHHHHHHhcCCCC-------Cchh----HHHHHHHHHHHHCCC--e--EEEecCHHHHHHHHHHHhCCCCcCEE
Confidence 3477777777665432221 1133 788999999999985 2 778888899999999998338898 8
Q ss_pred EEecCCCcchhhHHHHhhccc-eEEcCc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhc
Q psy16512 152 IYLTDNHTSVLGMRELVKTNQ-IYSFSV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRN 229 (815)
Q Consensus 152 v~~~~~h~s~~~~~~~~~~~g-~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~ 229 (815)
+++..+|+++.......+... .+++++ +..++++.+++++ .+++++|+ ++||||.+.|+++|.++|+
T Consensus 107 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i-------~~~~~~v~---~~n~tG~~~~l~~i~~l~~- 175 (399)
T 2oga_A 107 IVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAI-------TPRTRALL---PVHLYGHPADMDALRELAD- 175 (399)
T ss_dssp EEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBCHHHHHHHC-------CTTEEEEC---CBCGGGCCCCHHHHHHHHH-
T ss_pred EECCCccHHHHHHHHHCCCEEEEEecCCCCCCcCHHHHHHhc-------CCCCeEEE---EeCCcCCccCHHHHHHHHH-
Confidence 899988888665444332222 445544 2356666666543 35688777 4689999999999999999
Q ss_pred cccccccccCCCCeEEEEecccccCCCCCCCCCCC--CcEEEEcc--ccccccCCc-ceEEEEe-cccccccCcccccCc
Q psy16512 230 HVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQ--PDFISISF--YKMFGYPTG-LGALIVK-QKSAHVLNKTFYGGG 303 (815)
Q Consensus 230 ~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~--~D~vv~S~--~K~~g~p~G-~G~l~~~-~~~~~~l~~~~~g~~ 303 (815)
++|+++|+|++++.+... +...++ .|++++|+ +|+++ ++| .|+++.+ +++++.+++....+.
T Consensus 176 ----------~~~~~li~Dea~~~g~~~-~~~~~~~~~di~~~S~~~sK~~~-~~G~~g~~~~~~~~~~~~l~~~~~~g~ 243 (399)
T 2oga_A 176 ----------RHGLHIVEDAAQAHGARY-RGRRIGAGSSVAAFSFYPGKNLG-CFGDGGAVVTGDPELAERLRMLRNYGS 243 (399)
T ss_dssp ----------HHTCEECEECTTCTTCEE-TTEETTCTTCEEEEECCTTSSSC-CSSCCEEEEESCHHHHHHHHHHHBTTC
T ss_pred ----------HcCCEEEEECcccccCcc-CCeecccccCEEEEeCCCCccCC-cCCceEEEEeCCHHHHHHHHHHHhcCc
Confidence 899999999999877532 322233 69999999 59999 545 6777776 566555544322221
Q ss_pred eEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCC
Q psy16512 304 TVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHD 383 (815)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~ 383 (815)
.. .+. .....+ ..+.+....+++.++++.+.. ..++..++++++.+.|.++ |++++...
T Consensus 244 ~~-------~~~----~~~~g~-~~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~l~~~L~~~------~g~~~~~~ 302 (399)
T 2oga_A 244 RQ-------KYS----HETKGT-NSRLDEMQAAVLRIRLAHLDS---WNGRRSALAAEYLSGLAGL------PGIGLPVT 302 (399)
T ss_dssp SS-------TTC----CCSCCC-BCCCCHHHHHHHHHHHHTHHH---HHHHHHHHHHHHHHHTTTC------TTCBCCCC
T ss_pred cc-------ccc----cccccc-CCCcCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccC------CCccccCC
Confidence 10 000 000000 123455666655566655443 2366778888898888877 56665432
Q ss_pred CCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhh---hhhcCCCHHHHHHHhhcCCccCCcc
Q psy16512 384 TDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSC---QRFLGLSDITIKFHFQQGHICGDDK 460 (815)
Q Consensus 384 ~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~---~~~~g~~~~~~~~~~~~~~~c~~~~ 460 (815)
.. .....++.|.+... +..++.+.|.++||.++.++. .+... ...+|.+... |.
T Consensus 303 ~~----~~~~~~~~~~~~~~-----~~~~l~~~L~~~gI~v~~~~~-~~~~~~~~~~~~~~~~~~----------~p--- 359 (399)
T 2oga_A 303 AP----DTDPVWHLFTVRTE-----RRDELRSHLDARGIDTLTHYP-VPVHLSPAYAGEAPPEGS----------LP--- 359 (399)
T ss_dssp CT----TEECCCSSEEEECS-----SHHHHHHHHHHTTBCCBCSCS-SCGGGSHHHHTTSCCTTS----------CH---
T ss_pred CC----CCcceeEEEEEECC-----CHHHHHHHHHHCCCceecCCC-CccccchhhcccCCCCCC----------Ch---
Confidence 11 11111223444322 234588888899999987542 11111 0111211000 00
Q ss_pred cccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 461 DIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 461 ~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
..+....+++||+++.++|++|+++++++|++++.
T Consensus 360 -~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~ 394 (399)
T 2oga_A 360 -RAESFARQVLSLPIGPHLERPQALRVIDAVREWAE 394 (399)
T ss_dssp -HHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHH
Confidence 00000126899999999999999999999999764
No 157
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.86 E-value=1.3e-20 Score=209.65 Aligned_cols=350 Identities=11% Similarity=0.077 Sum_probs=220.5
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-E
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-F 151 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-v 151 (815)
+++++.+++.+.+... +.++. ... ..++++.+++++|. ++ +++|+|+|+|+.+++.++..++|| |
T Consensus 10 ~~~~v~~a~~~~~~~~-~~~~~-----g~~----~~~l~~~la~~~~~--~~--v~~~~ggt~al~~~~~~l~~~~gd~V 75 (394)
T 1o69_A 10 MGGNELKYIEEVFKSN-YIAPL-----GEF----VNRFEQSVKDYSKS--EN--ALALNSATAALHLALRVAGVKQDDIV 75 (394)
T ss_dssp --CCHHHHHHHHHHHT-TTSCT-----THH----HHHHHHHHHHHHCC--SE--EEEESCHHHHHHHHHHHTTCCTTCEE
T ss_pred CCHHHHHHHHHHHHcC-CccCC-----ChH----HHHHHHHHHHHhCC--Cc--EEEeCCHHHHHHHHHHHcCCCCCCEE
Confidence 4566777776665432 22221 233 78999999999997 33 999999999999999998338898 9
Q ss_pred EEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhcc
Q psy16512 152 IYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNH 230 (815)
Q Consensus 152 v~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~ 230 (815)
+++..+|+++.......+... .++++.+..++++.++++++ ....++++|++++ ++|...|+++|.++|+
T Consensus 76 l~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~----~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~-- 146 (394)
T 1o69_A 76 LASSFTFIASVAPICYLKAKPVFIDCDETYNIDVDLLKLAIK----ECEKKPKALILTH---LYGNAAKMDEIVEICK-- 146 (394)
T ss_dssp EEESSSCGGGTHHHHHTTCEEEEECBCTTSSBCHHHHHHHHH----HCSSCCCEEEEEC---GGGCCCCHHHHHHHHH--
T ss_pred EECCCccHHHHHHHHHcCCEEEEEEeCCCCCcCHHHHHHHHh----cccCCceEEEEEC---CCCChhhHHHHHHHHH--
Confidence 999999999876655533222 55555444567777776553 1111689999885 8999999999999999
Q ss_pred ccccccccCCCCeEEEEecccccCCCCCCCC--C-CCCcEEEEccccccccCCcceEEEEe-cccccccCcccccCceEE
Q psy16512 231 VFKKHFKCSRSNCFVLLDAATYCGSNMLDLK--Q-HQPDFISISFYKMFGYPTGLGALIVK-QKSAHVLNKTFYGGGTVK 306 (815)
Q Consensus 231 ~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~--~-~~~D~vv~S~~K~~g~p~G~G~l~~~-~~~~~~l~~~~~g~~~~~ 306 (815)
++|+++|+|++++.|....+.. . .++|++++|.||.++ |.++|+++++ +++++.+++....+..
T Consensus 147 ---------~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~~-- 214 (394)
T 1o69_A 147 ---------ENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQARE-- 214 (394)
T ss_dssp ---------HTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCCC--
T ss_pred ---------HcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhccc--
Confidence 8999999999998765432211 1 246677777799998 6679999996 5666655432211110
Q ss_pred EEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCC
Q psy16512 307 ISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDY 386 (815)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~ 386 (815)
...+ ......++..++.+..+.+++.. ++++.. ..++.+++++++.+.|.++ ++++.+..
T Consensus 215 ----~~~~---~~~~~~g~~~~~~~~~aa~~l~~-l~~l~~---~~~~~~~~~~~l~~~L~~~--------~~~~~~~~- 274 (394)
T 1o69_A 215 ----NCLH---YEHLDYGYNYRLSNVLGAIGVAQ-MEVLEQ---RVLKKREIYEWYKEFLGEY--------FSFLDELE- 274 (394)
T ss_dssp ----SSSS---CCCSSCCCBCBCCHHHHHHHHHH-HTTHHH---HHHHHHHHHHHHHHHHTTT--------EECCCCCT-
T ss_pred ----cCcc---ccccccCcccCcCHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHhccc--------ccccCCCC-
Confidence 0000 01112345556777766666543 444333 2378888899999888763 34443321
Q ss_pred CCCCccc--ceEEEEEecCC---------------C--CccCHHHHHHhhhcCCcEeccCccCCc--hhhhh--hcCCCH
Q psy16512 387 GESKYQG--NIVNFNLLHKD---------------G--TYYGYSEVQNLANLKKIQLRTGCHCNP--GSCQR--FLGLSD 443 (815)
Q Consensus 387 ~~~~~~~--~i~~f~~~~~~---------------~--~~~~~~~v~~~l~~~gI~v~~g~~~~~--~~~~~--~~g~~~ 443 (815)
...+ +++.+.++... + ..++..++.+.|.++||.+++|..|.. +.... ..++..
T Consensus 275 ---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~ 351 (394)
T 1o69_A 275 ---NSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGN 351 (394)
T ss_dssp ---TEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSH
T ss_pred ---CCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChH
Confidence 1112 25677765210 0 012345688889999999999865422 11100 001111
Q ss_pred HHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhcC
Q psy16512 444 ITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQA 499 (815)
Q Consensus 444 ~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~~ 499 (815)
.+-. ....+|++.+.++|++|+++++++|++++..++
T Consensus 352 ~~~~-------------------~~~~~~~~~~~~~t~edi~~~~~~l~~~~~~~~ 388 (394)
T 1o69_A 352 SELF-------------------FQKGICLPSGTAMSKDDVYEISKLILKSIKAGS 388 (394)
T ss_dssp HHHH-------------------HHHEEEECCCTTCCHHHHHHHHHHHHHHHC---
T ss_pred HHHH-------------------hcCeEEccCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 1100 014566667999999999999999999765554
No 158
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.86 E-value=1.3e-20 Score=211.14 Aligned_cols=325 Identities=13% Similarity=0.031 Sum_probs=193.4
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHH-Hhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRE-LVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~-~~~~~g--~v~~~~~~~~ 182 (815)
.+++++++++++|.+. .++++++++|+.+++.++. ++|| ||++...|++...... .+...| .+.++.+
T Consensus 84 ~~~le~~lA~l~g~~~----~v~~~sG~~Ai~~al~al~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~--- 155 (430)
T 3ri6_A 84 VEDLEQRLKNLTGALG----VLALGSGMAAISTAILTLA-RAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM--- 155 (430)
T ss_dssp HHHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT---
T ss_pred HHHHHHHHHHHHCCCc----EEEECCHHHHHHHHHHHHh-CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC---
Confidence 8899999999999854 4555566799999999997 8999 8889989988766333 555566 4444433
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .++++|++|++++++||+|.+.|+++|.++|+ ++|+++|+|++++.+.. .+...
T Consensus 156 d~~~l~~-------ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~-----------~~g~~livD~a~~~~~~-~~~~~ 216 (430)
T 3ri6_A 156 DSLAVEH-------ACDETTKLLFLETISNPQLQVADLEALSKVVH-----------AKGIPLVVDTTMTPPYL-LEAKR 216 (430)
T ss_dssp CHHHHHH-------HCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH-----------TTTCCEEEECTTSCTTT-CCGGG
T ss_pred CHHHHHH-------hhCCCCeEEEEECCCCCCCeecCHHHHHHHHH-----------HcCCEEEEECCCccccc-CChHH
Confidence 4555554 33468999999999999999999999999999 89999999999988765 34445
Q ss_pred CCCcEEEEccccccccCC-cceEEEE-eccc-ccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPT-GLGALIV-KQKS-AHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~-G~G~l~~-~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|+++.|++|+++++. ++|.+++ +.+. ... ...+..... . .....+.........+...++++....+.+.
T Consensus 217 ~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~-~~~~~~l~~-~--~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l 292 (430)
T 3ri6_A 217 LGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKS-LPSLAPYYA-K--AGPMAFLYKARKEVFQNLGPSLSPHNAYLQS 292 (430)
T ss_dssp GTCSEEEEECCCEEETTEEECCEEEEECSCSCGGG-STTTHHHHH-H--HGGGHHHHHHHHTHHHHHCCCCCHHHHHHHH
T ss_pred cCCEEEEECCcccccCCCCceEEEEEECChHHhhh-ccchhhhhh-h--hchhhHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 689999999999999442 2455554 3221 100 000000000 0 0000000000000001123344444433333
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCCCC--------cccc-eEEEEEecCCCCccC
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGESK--------YQGN-IVNFNLLHKDGTYYG 409 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~~~--------~~~~-i~~f~~~~~~~~~~~ 409 (815)
.+++.+. ..+++..+.+.++.+.|++. |.++ +..|.-.+.+. ..|+ +++|.+++.. .
T Consensus 293 ~~l~~l~---~r~~~~~~na~~la~~L~~~------p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~~----~ 359 (430)
T 3ri6_A 293 LGLETMA---LRIERSCQNAQELAHWLLSI------PQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKE----A 359 (430)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHTTC------TTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHH----H
T ss_pred hhhhhHH---HHHHHHHHHHHHHHHHHhCC------CCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCHH----H
Confidence 4444432 33467788888888999877 6665 44443111010 2367 9999987311 1
Q ss_pred HHHHHHhhhcCCcEeccCccCC---chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHH
Q psy16512 410 YSEVQNLANLKKIQLRTGCHCN---PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKY 486 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~g~~~~---~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~ 486 (815)
...+.+.+...++.++.|..++ ++....+..+++++..+ .|..++.||+|+|..+.++-++.
T Consensus 360 ~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~---------------~g~~~~liRlsvG~E~~~dl~~d 424 (430)
T 3ri6_A 360 SYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLK---------------LEISPAMMRLSVGIEEIEDLKED 424 (430)
T ss_dssp HHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CG---------------GGSCTTEEEEECCSSCHHHHHHH
T ss_pred HHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHh---------------cCCCCCeEEEEeccCCHHHHHHH
Confidence 2246667777777787776544 22222233333322111 14557899999997554444444
Q ss_pred HHHH
Q psy16512 487 FLSF 490 (815)
Q Consensus 487 lv~~ 490 (815)
|-++
T Consensus 425 l~~a 428 (430)
T 3ri6_A 425 ILQA 428 (430)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4333
No 159
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.86 E-value=3.4e-20 Score=208.05 Aligned_cols=364 Identities=9% Similarity=-0.016 Sum_probs=215.5
Q ss_pred ccchhhHHHHHHHHhhcccc-CCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc
Q psy16512 72 VYSQSQMNQTIEQLKENIFS-HPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS 150 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~-np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd 150 (815)
.+++.+.+++.+.+....+. .+. ....... .+++++.+++++|++ + +++++|+|+|+.+++.++..++||
T Consensus 13 ~~~~~~~~a~~~~~~~~~~~~~~~-~~g~~~l----~~~l~~~la~~~g~~--~--~i~~~~gt~al~~~~~~~~~~~gd 83 (418)
T 2c81_A 13 QHSDRTRRKIEEVFQSNRWAISGY-WTGEESM----ERKFAKAFADFNGVP--Y--CVPTTSGSTALMLALEALGIGEGD 83 (418)
T ss_dssp CCCHHHHHHHHHHHHHTCCSTTSB-CCSSCCH----HHHHHHHHHHHHTCS--E--EEEESCHHHHHHHHHHHTTCCTTC
T ss_pred CCCHHHHHHHHHHHhcCCccccCc-ccCCHHH----HHHHHHHHHHHhCCC--c--EEEeCCHHHHHHHHHHHcCCCCcC
Confidence 45677888887766543222 111 1122333 788999999999986 2 677888899999999999338898
Q ss_pred -EEEecCCCcchhhHHHHhhccc-eEEcCc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHh
Q psy16512 151 -FIYLTDNHTSVLGMRELVKTNQ-IYSFSV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVH 227 (815)
Q Consensus 151 -vv~~~~~h~s~~~~~~~~~~~g-~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~ 227 (815)
|+++..+|+++.......+... .+++++ +..++++.+++++ ++++++|+++ |+||...|+++|.++|
T Consensus 84 ~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i-------~~~~~~v~~~---~~~G~~~~~~~i~~~~ 153 (418)
T 2c81_A 84 EVIVPSLTWIATATAVLNVNALPVFVDVEADTYCIDPQLIKSAI-------TDKTKAIIPV---HLFGSMANMDEINEIA 153 (418)
T ss_dssp EEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHGGGC-------CTTEEEECCB---CCTTCCCCHHHHHHHH
T ss_pred EEEECCCccHhHHHHHHHcCCEEEEEecCCCCCCcCHHHHHHhh-------CCCCeEEEEe---CCcCCcccHHHHHHHH
Confidence 9999999988866554433222 455554 3456777776644 4578888864 6899999999999999
Q ss_pred hccccccccccCCCCeEEEEecccccCCC-C-CCCCCCCCcEEEEcc--ccccccCCcceEEEEe-cccccccCcccccC
Q psy16512 228 RNHVFKKHFKCSRSNCFVLLDAATYCGSN-M-LDLKQHQPDFISISF--YKMFGYPTGLGALIVK-QKSAHVLNKTFYGG 302 (815)
Q Consensus 228 ~~~~~~~~~~~~~~gi~vivD~a~~~g~~-~-~dl~~~~~D~vv~S~--~K~~g~p~G~G~l~~~-~~~~~~l~~~~~g~ 302 (815)
+ ++|+++|+|++++.+.. . ..+..+ .|+++.|+ ||+++ +...|+++.+ +++++.+++....+
T Consensus 154 ~-----------~~~~~li~D~a~~~~~~~~~~~~~~~-~~~~~~s~s~~K~~~-~g~~g~~~~~~~~l~~~~~~~~~~~ 220 (418)
T 2c81_A 154 Q-----------EHNLFVIEDCAQSHGSVWNNQRAGTI-GDIGAFSCQQGKVLT-AGEGGIIVTKNPRLFELIQQLRADS 220 (418)
T ss_dssp H-----------HTTCEEEEECTTCTTCEETTEETTSS-SSEEEEECCTTSSSC-SSSCEEEEESCHHHHHHHHHHHBTT
T ss_pred H-----------HCCCEEEEECcccccCccCCEecccc-cceEEEeccCCcccC-CCCeEEEEECCHHHHHHHHHHHHhC
Confidence 9 89999999999988752 1 111122 36777777 99999 5347888885 46655554433222
Q ss_pred ceEEEEecCCcccccccCcccccc--CCCCChh------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCC
Q psy16512 303 GTVKISMANENFHIKKDGLFEKFE--DGTVNYL------AIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNG 374 (815)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~--~gt~~~~------~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~ 374 (815)
.... .. .. .....+. .++.... ..+....++..+..+....++.+++++++.+.|.++
T Consensus 221 ~~~~---~~-~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~----- 286 (418)
T 2c81_A 221 RVYC---DD-SS-----ELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAIREKNAMFLNDALSKI----- 286 (418)
T ss_dssp EEEC---SC-GG-----GCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTS-----
T ss_pred cccc---cc-cc-----ccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----
Confidence 2110 00 00 0000111 1111111 111111111222222222377778889999999887
Q ss_pred CCcEEEcCCCCCCCC-Cccc-ceEEEEEecCCCCccCHHHHHHhhhcC-CcE---eccCccCCchhhhhh---cCCC---
Q psy16512 375 QPLVELYHDTDYGES-KYQG-NIVNFNLLHKDGTYYGYSEVQNLANLK-KIQ---LRTGCHCNPGSCQRF---LGLS--- 442 (815)
Q Consensus 375 ~p~~~l~~~~~~~~~-~~~~-~i~~f~~~~~~~~~~~~~~v~~~l~~~-gI~---v~~g~~~~~~~~~~~---~g~~--- 442 (815)
|+++++.+.. . .... .++.+.+++.....++..++.+.|.++ ||. ++.|+.+. +.... ++..
T Consensus 287 -~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~--~~~~~~~~~~~~~~~ 360 (418)
T 2c81_A 287 -DGIKVMKRPP---QVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPV--HKNPLFCPWTKNRYL 360 (418)
T ss_dssp -TTEEECCCCT---TEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCG--GGCTTCCGGGCTTSC
T ss_pred -CCcccCCCCC---CCcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCccccccccccc--ccCchhccccccccc
Confidence 7888874321 0 0112 356677753100012345688888888 999 88876332 11110 0000
Q ss_pred ------HHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCC-CHHHHHHHHHHHHHHHh
Q psy16512 443 ------DITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHAS-NWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 443 ------~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~-t~edi~~lv~~L~~~~~ 496 (815)
.+.+ ..+ .....+....+.||++++.++ |++||++++++|++++.
T Consensus 361 ~~~~~~~~~~----~~~-----~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~ 412 (418)
T 2c81_A 361 KSVRKTEAYW----RGL-----HYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELAR 412 (418)
T ss_dssp HHHHCCHHHH----HTC-----CCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred cccccccccc----ccC-----CChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHH
Confidence 0000 000 000000001368999999999 99999999999999764
No 160
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.86 E-value=6.5e-21 Score=213.80 Aligned_cols=296 Identities=12% Similarity=0.045 Sum_probs=194.1
Q ss_pred HHHHHHHHHhHcC-C-CCC-ceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch-h
Q psy16512 107 IDQMRTKILQYFN-T-DSD-HYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD-D 180 (815)
Q Consensus 107 ~~~~r~~la~~~g-~-~~~-~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~-~ 180 (815)
..++|+.+++++. . .++ ..+|++|+|+++|+.+++.++. ++|| |++..+.|+++.......+... .++++.+ .
T Consensus 82 ~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~ 160 (418)
T 3rq1_A 82 IPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYT-EPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHN 160 (418)
T ss_dssp CHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHS-CTTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTTS
T ss_pred hHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHhc-CCCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCCC
Confidence 5567777777651 1 122 1149999999999999999997 8999 8888888877665544433322 4555333 3
Q ss_pred hhcchhhhhhhhhhhhhcCCCcc-EEEEecc-cCCCccccChHHHHHHhhccccccccccC------CCCeEEEEecccc
Q psy16512 181 ARNMLNEFKESQENVENMRHSNS-LFVYPAE-SNFSGTKYPLSWCNTVHRNHVFKKHFKCS------RSNCFVLLDAATY 252 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~-lv~i~~~-~n~tG~~~~l~~I~~l~~~~~~~~~~~~~------~~gi~vivD~a~~ 252 (815)
.++++.++++++. ...++++ +++++++ +||||.++|.+++.++++ .|+ ++|+++|+|+++.
T Consensus 161 ~~d~~~l~~~l~~---~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~--------~~~~~~~~~~~~~~li~De~y~ 229 (418)
T 3rq1_A 161 NFNHEAFQNRVNE---LAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILN--------FLKDLVAIGRNNVIIGIDVAYL 229 (418)
T ss_dssp SBCHHHHHHHHHH---HHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHH--------HHHHHHHTSSCEEEEEEECTTG
T ss_pred CcCHHHHHHHHHH---hhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHH--------HHHHhhhccCCCeEEEEecccc
Confidence 6677777765531 1112455 8899999 999999999999888887 566 7899999999974
Q ss_pred cCCC------C--CCCCCCCCc---EEEEccccccccCCc--ceEEEE---ecccccccCcccccCceEEEEecCCcccc
Q psy16512 253 CGSN------M--LDLKQHQPD---FISISFYKMFGYPTG--LGALIV---KQKSAHVLNKTFYGGGTVKISMANENFHI 316 (815)
Q Consensus 253 ~g~~------~--~dl~~~~~D---~vv~S~~K~~g~p~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~ 316 (815)
.... + ........+ +++.|+||.|| ++| +|++++ ++++++.+.......
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~~~~~~~-------------- 294 (418)
T 3rq1_A 230 DYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFT-MYGQRVGAMIGISDDEEIADEFFEVNKST-------------- 294 (418)
T ss_dssp GGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTT-CCSSCCEEEEEEESSHHHHHHHHHHHHHH--------------
T ss_pred cccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCc-CcCCcceEEEEEeCCHHHHHHHHHHHHHH--------------
Confidence 2110 0 011122334 77789999998 556 799998 777766553221000
Q ss_pred cccCccccccCCCCChhHHHHHHHHHHHHH------hhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCC
Q psy16512 317 KKDGLFEKFEDGTVNYLAIISLKYGFDTME------KKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGES 389 (815)
Q Consensus 317 ~~~~~~~~~~~gt~~~~~~~al~~al~~l~------~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~ 389 (815)
.+....+++..+..++..+++... +....+ ++.+++++++.+.|+++ +++++.+..
T Consensus 295 ------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~---- 357 (418)
T 3rq1_A 295 ------SRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV-------GLPMLPYRG---- 357 (418)
T ss_dssp ------HHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TCCCCCCCS----
T ss_pred ------HhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCCCCCCc----
Confidence 000112456666666666553321 111122 66778888888888876 455554432
Q ss_pred CcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCce
Q psy16512 390 KYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTG 469 (815)
Q Consensus 390 ~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g 469 (815)
+.++++.+. +..++.+.|.++||.+++| .+
T Consensus 358 ---~~~~~~~~~-------~~~~~~~~l~~~gi~v~~g----------------------------------------~~ 387 (418)
T 3rq1_A 358 ---GFFITIPTD-------SANAICEELKKEHIYVIAL----------------------------------------AN 387 (418)
T ss_dssp ---SSEEEEECT-------THHHHHHHHHHTTEECEEC----------------------------------------SS
T ss_pred ---eEEEEcCCC-------CHHHHHHHHHhCCEEEecC----------------------------------------CC
Confidence 334444332 2235778889999999875 26
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 470 SIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 470 ~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
++|+|++ ..+++++++++++|++++.+
T Consensus 388 ~iRis~~-~~~~~~i~~~~~~l~~~l~~ 414 (418)
T 3rq1_A 388 GIRIAAC-GIPKCQMTGLAEKIYNAMKS 414 (418)
T ss_dssp EEEEEGG-GSCHHHHTTHHHHHHHHHHH
T ss_pred CeEEEEe-cCCHHHHHHHHHHHHHHHHH
Confidence 7999987 45899999999999998754
No 161
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.86 E-value=4.7e-21 Score=214.68 Aligned_cols=336 Identities=13% Similarity=0.093 Sum_probs=212.4
Q ss_pred ccccchhhHHHHHHHHhhc-cccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccC
Q psy16512 70 AGVYSQSQMNQTIEQLKEN-IFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFN 147 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~~-~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~ 147 (815)
....++.+.+++.+.+... ..++|++. +..........+.+++.+++++|+++++ |++++| |+|+.+++.++. +
T Consensus 34 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~--i~~~sG-t~a~~~~~~~~~-~ 109 (417)
T 3n0l_A 34 ENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFAN--VQPNSG-SQANQGVYAALI-N 109 (417)
T ss_dssp CCCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEE--CCCSSH-HHHHHHHHHHHS-C
T ss_pred cCCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcc--eEeccH-HHHHHHHHHHhc-C
Confidence 3445788888877665322 12344322 1111111111446788999999997764 777777 899999999997 9
Q ss_pred CCc-EEEecCCCcchhhHHHHhhcc--c--e--EEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccCh
Q psy16512 148 EGS-FIYLTDNHTSVLGMRELVKTN--Q--I--YSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPL 220 (815)
Q Consensus 148 ~gd-vv~~~~~h~s~~~~~~~~~~~--g--~--v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l 220 (815)
+|| |++...+|+++.......... + . ++++.++.++++.++++++ .+++++|++++++| |...|+
T Consensus 110 ~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~------~~~~~~v~~~~~~~--G~~~~l 181 (417)
T 3n0l_A 110 PGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAK------KEKPKLIVCGASAY--ARVIDF 181 (417)
T ss_dssp TTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHH------HHCCSEEEECCSSC--CSCCCH
T ss_pred CCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHH------hcCCeEEEECCccc--CccCCH
Confidence 999 888888887754422221122 2 2 3345444567777776543 13689999888775 999999
Q ss_pred HHHHHHhhccccccccccCCCCeEEEEecccccCCC-----CCCCCCCCCcEEEEccccccccCCcceEEEEe-cccccc
Q psy16512 221 SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-----MLDLKQHQPDFISISFYKMFGYPTGLGALIVK-QKSAHV 294 (815)
Q Consensus 221 ~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-----~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~-~~~~~~ 294 (815)
++|.++|+ ++|+++|+|++|+.|.. +..+. ..|++++|+||+|++|.| |+++.+ +++.+.
T Consensus 182 ~~i~~l~~-----------~~~~~li~Dea~~~g~~~~~~~~~~~~--~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~ 247 (417)
T 3n0l_A 182 AKFREIAD-----------EIGAYLFADIAHIAGLVVAGEHPSPFP--YAHVVSSTTHKTLRGPRG-GIIMTNDEELAKK 247 (417)
T ss_dssp HHHHHHHH-----------HHTCEEEEECTTTHHHHHTTSSCCCTT--TCSEEEEESSTTTCSCSC-EEEEESCHHHHHH
T ss_pred HHHHHHHH-----------HcCCEEEEECccchhhhhcccCCCccc--cceEEEeeCccccCCCCe-eEEEECCHHHHHH
Confidence 99999999 89999999999865543 22222 479999999998876764 999988 466555
Q ss_pred cCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh-hhH-HHHHHHHHHHHHHHHhcccc
Q psy16512 295 LNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-KSF-TNAFELSQYTYFYFKQLSYS 372 (815)
Q Consensus 295 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-~~~-~~~~~l~~~l~~~L~~l~~~ 372 (815)
+.+.... ...++++...+.++..++....... ..+ ++..++++++.+.|.+.
T Consensus 248 ~~~~~~~-----------------------~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--- 301 (417)
T 3n0l_A 248 INSAIFP-----------------------GIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR--- 301 (417)
T ss_dssp HHHHHTT-----------------------TTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HhhhhCC-----------------------cccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC---
Confidence 4322111 1134566677777766665532111 222 78888889999999875
Q ss_pred CCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhc
Q psy16512 373 NGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQ 452 (815)
Q Consensus 373 ~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~ 452 (815)
+++++... ..++++.+.+... .++..++.+.|.++||.++.+....... .
T Consensus 302 ----g~~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~~l~~~gi~v~~~~~~~~~~--~--------------- 351 (417)
T 3n0l_A 302 ----KFKLVSDG------TDNHLVLMSFLDR---EFSGKDADLALGNAGITANKNTVPGEIR--S--------------- 351 (417)
T ss_dssp ----TCEEGGGS------CSSSEEEEECTTS---SSCHHHHHHHHHHTTEECEECCCTTCCS--C---------------
T ss_pred ----CceeccCC------CCceEEEEEcccC---CCCHHHHHHHHHHcCeEEeccccCCCCc--c---------------
Confidence 67776521 1245666665422 1334568888999999998653211100 0
Q ss_pred CCccCCcccccCCCCceEEEEeccCC----CCHHHHHHHHHHHHHHHhhcC
Q psy16512 453 GHICGDDKDIIDGKPTGSIRISYGHA----SNWDDVKYFLSFLNQYFLQQA 499 (815)
Q Consensus 453 ~~~c~~~~~~~~~~~~g~iRvs~g~~----~t~edi~~lv~~L~~~~~~~~ 499 (815)
......+|+++... .+++++++++++|++++.+..
T Consensus 352 ------------~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~ 390 (417)
T 3n0l_A 352 ------------PFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDVN 390 (417)
T ss_dssp ------------TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred ------------cCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhccc
Confidence 01135799997643 368999999999999887654
No 162
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.85 E-value=5.4e-21 Score=214.30 Aligned_cols=336 Identities=13% Similarity=0.065 Sum_probs=207.3
Q ss_pred ccccchhhHHHHHHHHhh-ccccCCCChh-hhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccC
Q psy16512 70 AGVYSQSQMNQTIEQLKE-NIFSHPHGNS-VLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFN 147 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~-~~~~np~s~~-~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~ 147 (815)
....++.+.+++.+.+.. ...++|++.+ ..........+.+++++++++|++++. +++++| ++|+..++.++. +
T Consensus 39 ~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--v~~~sG-s~a~~~a~~~~~-~ 114 (420)
T 3gbx_A 39 ENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYAN--VQPHSG-SQANFAVYTALL-Q 114 (420)
T ss_dssp CCCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEE--CCCSSH-HHHHHHHHHHHC-C
T ss_pred CCCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCce--eEecCc-HHHHHHHHHHhc-C
Confidence 334678888888776633 2224454331 111111112456778999999997654 556655 789999999987 8
Q ss_pred CCc-EEEecCCCcchhh-HH--HHhhccc---eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccCh
Q psy16512 148 EGS-FIYLTDNHTSVLG-MR--ELVKTNQ---IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPL 220 (815)
Q Consensus 148 ~gd-vv~~~~~h~s~~~-~~--~~~~~~g---~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l 220 (815)
+|| |++...+|+++.. .. ...+... .++++.++..+++.++++++ ..++++|++++++|+ ...|+
T Consensus 115 ~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~------~~~~~~v~~~~~~~~--~~~~l 186 (420)
T 3gbx_A 115 PGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAK------EHKPKMIIGGFSAYS--GVVDW 186 (420)
T ss_dssp TTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHH------HHCCSEEEECCTTCC--SCCCH
T ss_pred CCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHH------hcCCeEEEEecCccC--CccCH
Confidence 999 8888888887432 11 1111111 33445445577777776553 124899999888875 57899
Q ss_pred HHHHHHhhccccccccccCCCCeEEEEecccccCCC-----CCCCCCCCCcEEEEccccccccCCcceEEEEec---ccc
Q psy16512 221 SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-----MLDLKQHQPDFISISFYKMFGYPTGLGALIVKQ---KSA 292 (815)
Q Consensus 221 ~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-----~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~---~~~ 292 (815)
++|.++|+ ++|+++|+|++|+.+.. +..+. .+|+++.|+||++++|.| |+++.++ ++.
T Consensus 187 ~~l~~l~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~--~~di~~~s~sK~~~g~~g-g~~~~~~~~~~~~ 252 (420)
T 3gbx_A 187 AKMREIAD-----------SIGAYLFVDMAHVAGLIAAGVYPNPVP--HAHVVTTTTHKTLAGPRG-GLILAKGGDEELY 252 (420)
T ss_dssp HHHHHHHH-----------HTTCEEEEECTTTHHHHHTTSSCCSTT--TSSEEEEESSGGGCSCSC-EEEEESSCCHHHH
T ss_pred HHHHHHHH-----------HcCCEEEEECCcchhceecccCCcccc--cCCEEEeecccCCCCCCc-eEEEEcCCcHHHH
Confidence 99999999 89999999999875532 22222 389999999999966876 9998887 444
Q ss_pred cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHH-hhhhh-HHHHHHHHHHHHHHHHhcc
Q psy16512 293 HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME-KKRKS-FTNAFELSQYTYFYFKQLS 370 (815)
Q Consensus 293 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~-~~~~~-~~~~~~l~~~l~~~L~~l~ 370 (815)
+.+....+. ...++++...+.++..++.... ..... .++..++++++.+.|.+.
T Consensus 253 ~~~~~~~~~-----------------------~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 308 (420)
T 3gbx_A 253 KKLNSAVFP-----------------------SAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR- 308 (420)
T ss_dssp HHHHHHHC---------------------------CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHhhhhcCC-----------------------CCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-
Confidence 433222111 1123556666666665554432 21122 288888999999999875
Q ss_pred ccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHh
Q psy16512 371 YSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHF 450 (815)
Q Consensus 371 ~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~ 450 (815)
+++++.+. ..++++.+.+.... .+...+.+.|.++||.+++........ .
T Consensus 309 ------g~~~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~~~~~~~~~--~------------- 358 (420)
T 3gbx_A 309 ------GYKVVSGG------TENHLFLLDLVDKN---LTGKEADAALGRANITVNKNSVPNDPK--S------------- 358 (420)
T ss_dssp ------TCEEGGGS------CSSSEEEEECGGGT---CCHHHHHHHHHHTTEECEEECCTTCSS--C-------------
T ss_pred ------CCeeccCC------CCCeEEEEEcCCCC---CCHHHHHHHHHHCCcEeccccCCCCcc--c-------------
Confidence 67776532 12567777765321 233457888899999998732111000 0
Q ss_pred hcCCccCCcccccCCCCceEEEEeccCCC----CHHHHHHHHHHHHHHHhhcC
Q psy16512 451 QQGHICGDDKDIIDGKPTGSIRISYGHAS----NWDDVKYFLSFLNQYFLQQA 499 (815)
Q Consensus 451 ~~~~~c~~~~~~~~~~~~g~iRvs~g~~~----t~edi~~lv~~L~~~~~~~~ 499 (815)
......+|++++..+ +++++++++++|++++.+..
T Consensus 359 --------------~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~ 397 (420)
T 3gbx_A 359 --------------PFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNIN 397 (420)
T ss_dssp --------------TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred --------------cCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhCcc
Confidence 001245999987653 58999999999999886654
No 163
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.85 E-value=2.3e-20 Score=222.61 Aligned_cols=309 Identities=12% Similarity=0.055 Sum_probs=218.0
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch-----
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD----- 179 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~----- 179 (815)
+.++++.+++++|++. .+++++|+++|+.+++.++. ++|| |+++..+|+++.......+... +++.+.+
T Consensus 207 v~~~ee~la~l~G~d~---~i~~~~Gtt~a~~~~i~al~-~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~~~g~~ 282 (755)
T 2vyc_A 207 FGESEKYAARVFGADR---SWSVVVGTSGSNRTIMQACM-TDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRYGII 282 (755)
T ss_dssp HHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHHC-CTTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBCTTSCB
T ss_pred HHHHHHHHHHHhCCCc---eEEECCcHHHHHHHHHHHhc-CCCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCCccccc
Confidence 6789999999999863 37888999999999999998 9999 9999999999877655443322 4444332
Q ss_pred hhh-----cchhhhhhhhhh---hhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccc
Q psy16512 180 DAR-----NMLNEFKESQEN---VENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAAT 251 (815)
Q Consensus 180 ~~~-----~~~~~~~~l~~~---~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~ 251 (815)
+.+ +++.++++|++. +.+...++++++++++ |++|.+.|+++|+++|+ ++|+++++|++|
T Consensus 283 g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~-----------~~~~~livDeA~ 350 (755)
T 2vyc_A 283 GPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLE-----------KTSDRLHFDEAW 350 (755)
T ss_dssp CCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHT-----------TTCSEEEEECTT
T ss_pred cccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHH-----------HcCCEEEEECcC
Confidence 113 667777655310 0011123459999997 79999999999999999 899999999998
Q ss_pred ccCCC--CC--CCCC-CC--CcE------EEEccccccccCCcceEEEEecc--cccccCcccccCceEEEEecCCcccc
Q psy16512 252 YCGSN--ML--DLKQ-HQ--PDF------ISISFYKMFGYPTGLGALIVKQK--SAHVLNKTFYGGGTVKISMANENFHI 316 (815)
Q Consensus 252 ~~g~~--~~--dl~~-~~--~D~------vv~S~~K~~g~p~G~G~l~~~~~--~~~~l~~~~~g~~~~~~~~~~~~~~~ 316 (815)
+.+.. +. +... .+ +|+ ++.|+||++++|.|.|+++++++ .++.. .+
T Consensus 351 ~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~--~~----------------- 411 (755)
T 2vyc_A 351 YGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFS--RF----------------- 411 (755)
T ss_dssp CTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHH--HH-----------------
T ss_pred chhcccCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHH--HH-----------------
Confidence 75321 10 1111 34 565 99999999998888899999876 22100 00
Q ss_pred cccCccccccCCCCChhHHHHHHHHHHHHHhh-hhhH-HHHHHHHHHHHHHHHhccccCCCCc---------EEEcCCCC
Q psy16512 317 KKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK-RKSF-TNAFELSQYTYFYFKQLSYSNGQPL---------VELYHDTD 385 (815)
Q Consensus 317 ~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~-~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~---------~~l~~~~~ 385 (815)
......+..+++++..++++.+|++++... +... ++..++++++++.|+++ ++ ++++++..
T Consensus 412 --~~~~~~~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l------~~~~~~~~~~~~~~~~~~~ 483 (755)
T 2vyc_A 412 --NQAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARL------YKEFTADGSWFFKPWNKEV 483 (755)
T ss_dssp --HHHHHHTSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHTTTCCCCEESSCSE
T ss_pred --HHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc------cccccccccceeeccCchh
Confidence 000124567899999999999999988765 3344 88899999999999887 45 66666532
Q ss_pred CCC--------------------------------------CC----cccceEEEEEec--CCC----CccCHHHHHHhh
Q psy16512 386 YGE--------------------------------------SK----YQGNIVNFNLLH--KDG----TYYGYSEVQNLA 417 (815)
Q Consensus 386 ~~~--------------------------------------~~----~~~~i~~f~~~~--~~~----~~~~~~~v~~~l 417 (815)
... .. .....++|.+++ .++ ..++..++.+.|
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L 563 (755)
T 2vyc_A 484 VTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWL 563 (755)
T ss_dssp EECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHH
T ss_pred ccccccccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHH
Confidence 100 00 023467777763 223 124456788899
Q ss_pred hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 418 NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 418 ~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
+++||.+.... .+.+|+++++.+|++++++|+++|.++...
T Consensus 564 ~~~gI~~e~~~---------------------------------------~~~v~~~~~~g~t~~~~~~l~~al~~~~~~ 604 (755)
T 2vyc_A 564 GRHGIVPTRTT---------------------------------------DFQIMFLFSMGVTRGKWGTLVNTLCSFKRH 604 (755)
T ss_dssp HTTTCCCSEEC---------------------------------------SSEEEEECCTTCCTTTTHHHHHHHHHHHHH
T ss_pred HHCCCEEeecC---------------------------------------CCeEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 88998875310 378999999999999999999999997543
No 164
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.85 E-value=3e-20 Score=212.89 Aligned_cols=336 Identities=14% Similarity=0.080 Sum_probs=210.0
Q ss_pred ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc-----CC--CCCceeEEecCCchhhHHHHHhhh
Q psy16512 72 VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF-----NT--DSDHYSVIFTSGATSAIKTVSEYF 144 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~-----g~--~~~~~~iv~t~g~t~al~~~~~al 144 (815)
..|..+.+++.+.+.... +.....+..... ..++|+.+++++ |. ++++ |++|+|+++|+.+++.++
T Consensus 101 ~~P~~~~~~~~~~l~~~~-~~~~~~Y~~~~G----~~~lr~~ia~~~~~~~gG~~~~~~~--i~~t~G~~~ai~~~~~~l 173 (498)
T 3ihj_A 101 SFPEDAKKRARRILQACG-GNSLGSYSASQG----VNCIREDVAAYITRRDGGVPADPDN--IYLTTGASDGISTILKIL 173 (498)
T ss_dssp SSCHHHHHHHHHHHHHC-----------CCS----CHHHHHHHHHHHHHHTTTCCCCGGG--EEEESSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-CCCCCCCCCCCC----HHHHHHHHHHHHHHhcCCCCCCccc--EEEcCCHHHHHHHHHHHH
Confidence 346666666655554311 000011222233 556777777665 34 4565 999999999999999999
Q ss_pred ccCCC----c-EEEecCCCcchhhHHHHhhccc-eEEcCchh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcc
Q psy16512 145 EFNEG----S-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGT 216 (815)
Q Consensus 145 ~~~~g----d-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~ 216 (815)
. .+| | |++..+.|+++.......+... .++.++++ .++++.++++++... ...++++|++++++||||.
T Consensus 174 ~-~~gd~~~d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~--~~~~~k~i~l~np~NPTG~ 250 (498)
T 3ihj_A 174 V-SGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAK--DHCDPKVLCIINPGNPTGQ 250 (498)
T ss_dssp C-CCCGGGSEEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHT--TTSEEEEEEEESSCTTTCC
T ss_pred c-CCCCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhh--ccCCCeEEEEECCCCCCCC
Confidence 8 665 4 8888999988776665554333 56666553 557777777554110 0125899999999999999
Q ss_pred ccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC-----CCCCCCC----------CC-cEEEEccccccccCC
Q psy16512 217 KYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-----MLDLKQH----------QP-DFISISFYKMFGYPT 280 (815)
Q Consensus 217 ~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-----~~dl~~~----------~~-D~vv~S~~K~~g~p~ 280 (815)
+++.+++.++++ .|+++++++|+|+++..... ..++... .. .+++.|+||.|.+++
T Consensus 251 v~s~~~l~~i~~--------la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~ 322 (498)
T 3ihj_A 251 VQSRKCIEDVIH--------FAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGEC 322 (498)
T ss_dssp CCCHHHHHHHHH--------HHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCS
T ss_pred cCCHHHHHHHHH--------HHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCc
Confidence 999776544443 23389999999999865332 1111110 11 267789999993255
Q ss_pred c--ceEEEE---ecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHH-----------H
Q psy16512 281 G--LGALIV---KQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFD-----------T 344 (815)
Q Consensus 281 G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~-----------~ 344 (815)
| +||+++ ++++++.+.... ....+++.++..++..+++ +
T Consensus 323 G~R~G~~~~~~~~~~l~~~l~~~~-------------------------~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~ 377 (498)
T 3ihj_A 323 GYRGGYMEVINLHPEIKGQLVKLL-------------------------SVRLCPPVSGQAAMDIVVNPPVAGEESFEQF 377 (498)
T ss_dssp SSCCEEEEEESCCHHHHHHHHHHH-------------------------HHSCCCCHHHHHHHHHHTCCCCTTSTTHHHH
T ss_pred ccceEEEEEecCCHHHHHHHHHHH-------------------------hccCCCCHHHHHHHHHHhcCCccCcccHHHH
Confidence 6 799884 555555442211 0122456666666666552 2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC-------CccCHHH--HHH
Q psy16512 345 MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG-------TYYGYSE--VQN 415 (815)
Q Consensus 345 l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~-------~~~~~~~--v~~ 415 (815)
+.......+++.+.++++.+.|+++ |++++..+.+ +.++++.+..... ..++..+ +.+
T Consensus 378 ~~~~~~~~~~l~~~~~~l~~~L~~~------~g~~~~~p~g-------g~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ 444 (498)
T 3ihj_A 378 SREKESVLGNLAKKAKLTEDLFNQV------PGIHCNPLQG-------AMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMK 444 (498)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTS------TTEECCCCCB-------SSEECCEECCCHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC------CCcEecCCCe-------EEEEEEeccCchhhhHHHHhcCCCcHHHHHHH
Confidence 2222122277888899999999987 7888876542 3333334431110 0112223 466
Q ss_pred hhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 416 LANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 416 ~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
+|.++||.+.+|+.|.... ..+++|++++ .++++++.+++.|.+++
T Consensus 445 ll~~~gI~v~pG~~f~~~~--------------------------------~~~~~Ris~~--~~~e~l~~~i~~L~~~~ 490 (498)
T 3ihj_A 445 LLEETGICVVPGSGFGQRE--------------------------------GTYHFRMTIL--PPVEKLKTVLQKVKDFH 490 (498)
T ss_dssp HHHHHCBCCEEGGGTCCCT--------------------------------TCCBEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred HHHHCCEEEEeCcccCCCC--------------------------------CCCEEEEEeC--CCHHHHHHHHHHHHHHH
Confidence 7788999999987765321 1368999996 68999999999999876
Q ss_pred hh
Q psy16512 496 LQ 497 (815)
Q Consensus 496 ~~ 497 (815)
.+
T Consensus 491 ~~ 492 (498)
T 3ihj_A 491 IN 492 (498)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 165
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.85 E-value=1.1e-19 Score=204.50 Aligned_cols=336 Identities=11% Similarity=0.048 Sum_probs=218.6
Q ss_pred hhhhhhhhccc------ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGAG------VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~~------~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+.. ..++.+.+++.+.+.... .++...+ .... ..++++++++++++++++ |+||+|++
T Consensus 42 g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~-~~~~~~~-~~~~----~~~l~~~la~~~~~~~~~--v~~~~ggt 113 (429)
T 1s0a_A 42 GRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMS-HVMFGGI-THAP----AIELCRKLVAMTPQPLEC--VFLADSGS 113 (429)
T ss_dssp SCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCS-CCCCSSE-ECHH----HHHHHHHHHHHSCTTCCE--EEEESSHH
T ss_pred CCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcc-ccccccc-CCHH----HHHHHHHHHHhCCCCCCE--EEEeCCHH
Confidence 45678875443 247888888888775422 1111111 1122 567888999999987776 99999999
Q ss_pred hhHHHHHhhhcc--C----CCc-EEEecCCC-cchhhHHHHhh-------c-----cc--eEEcCc------hhhhcchh
Q psy16512 135 SAIKTVSEYFEF--N----EGS-FIYLTDNH-TSVLGMRELVK-------T-----NQ--IYSFSV------DDARNMLN 186 (815)
Q Consensus 135 ~al~~~~~al~~--~----~gd-vv~~~~~h-~s~~~~~~~~~-------~-----~g--~v~~~~------~~~~~~~~ 186 (815)
+|+.+++.++.. + +|+ ||+....| .+........+ . .+ .++++. .+..+++.
T Consensus 114 ea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 193 (429)
T 1s0a_A 114 VAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVG 193 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHH
T ss_pred HHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHH
Confidence 999999886531 2 576 77777654 43333322211 0 12 344431 12356666
Q ss_pred hhhhhhhhhhhcCCCccEEEEecc-cCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC---
Q psy16512 187 EFKESQENVENMRHSNSLFVYPAE-SNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM--- 257 (815)
Q Consensus 187 ~~~~l~~~~~~~~~~t~lv~i~~~-~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~--- 257 (815)
++++++ ...+++++|+++.+ +|+||.+.| +++|.++|+ ++|+++|+|++|. ++...
T Consensus 194 l~~~l~----~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~-----------~~~~~li~De~~~~~g~~g~~~ 258 (429)
T 1s0a_A 194 FARLMA----AHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICD-----------REGILLIADEIATGFGRTGKLF 258 (429)
T ss_dssp HHHHHH----HHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHH-----------HHTCEEEEECTTTTTTTTSSSS
T ss_pred HHHHHH----hCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEeehhhCCcccchHH
Confidence 665443 11245778888777 899998887 888888888 8999999999987 44221
Q ss_pred -CCCCCCCCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHH
Q psy16512 258 -LDLKQHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAI 335 (815)
Q Consensus 258 -~dl~~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 335 (815)
++.....+|++ |++|.++++ .++|++++++++++.+.+.. ... + ......+.|.+++
T Consensus 259 ~~~~~~~~~d~~--t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~--~~~---------~--------~~~~t~~~n~~~~ 317 (429)
T 1s0a_A 259 ACEHAEIAPDIL--CLGKALTGGTMTLSATLTTREVAETISNGE--AGC---------F--------MHGPTFMGNPLAC 317 (429)
T ss_dssp GGGGGTCCCSEE--EECGGGGTSSSCCEEEEECHHHHHHHHTST--TSS---------C--------SCCCTTTTCHHHH
T ss_pred HhhhcCCCCCEE--EecccccCCCccceEEEeCHHHHHHhhcCC--Ccc---------c--------ccCCCCCCCHHHH
Confidence 12223457876 567988854 56899999987765543210 000 0 0011224577888
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHH
Q psy16512 336 ISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQN 415 (815)
Q Consensus 336 ~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~ 415 (815)
.++.++++.+... ...++.+++++++.+.|+++.. .|++..+.+ .+.++.+.++.. .+...+.+
T Consensus 318 ~a~~aal~~~~~~-~~~~~~~~~~~~l~~~L~~l~~---~~~~~~~~~--------~g~~~~~~~~~~----~~~~~l~~ 381 (429)
T 1s0a_A 318 AAANASLAILESG-DWQQQVADIEVQLREQLAPARD---AEMVADVRV--------LGAIGVVETTHP----VNMAALQK 381 (429)
T ss_dssp HHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHGGGGG---CTTEEEEEE--------ETTEEEEEESSC----BCHHHHHH
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHhc---CCCEEEEEE--------eeEEEEEEECCc----ccHHHHHH
Confidence 8888888877652 2238888999999999987621 134543322 267788877542 23445778
Q ss_pred hhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 416 LANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 416 ~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.|.++||.+++. .+++|+|+++.++++|+++++++|++++
T Consensus 382 ~l~~~Gi~v~~~----------------------------------------~~~iRis~~~~~t~e~i~~~~~~l~~~~ 421 (429)
T 1s0a_A 382 FFVEQGVWIRPF----------------------------------------GKLIYLMPPYIILPQQLQRLTAAVNRAV 421 (429)
T ss_dssp HHHHTTEECCCB----------------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHCCCEEecc----------------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 888899998642 1689999999999999999999999976
Q ss_pred h
Q psy16512 496 L 496 (815)
Q Consensus 496 ~ 496 (815)
.
T Consensus 422 ~ 422 (429)
T 1s0a_A 422 Q 422 (429)
T ss_dssp S
T ss_pred H
Confidence 4
No 166
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.84 E-value=5.8e-20 Score=207.39 Aligned_cols=353 Identities=13% Similarity=0.093 Sum_probs=208.1
Q ss_pred ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhc------
Q psy16512 72 VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFE------ 145 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~------ 145 (815)
.+.+++.+++.+.+....+ .+. .. ..++++.+++++|++ + +++++|+|+|+.+++.++.
T Consensus 40 ~~~~~~~~a~~~~~~~~~~-~~~------~~----~~~l~~~la~~~g~~--~--~i~~~sGt~a~~~al~~l~~~~~~~ 104 (437)
T 3bb8_A 40 VIGTKELQLMVEASLDGWL-TTG------RF----NDAFEKKLGEYLGVP--Y--VLTTTSGSSANLLALTALTSPKLGV 104 (437)
T ss_dssp CCCHHHHHHHHHHHHHCCC-BSC------HH----HHHHHHHHHHHHTCS--E--EEEESCHHHHHHHHHHHTTCGGGGG
T ss_pred CCCHHHHHHHHHHHHcCCc-CCC------hH----HHHHHHHHHHHHCCC--c--EEEeCCHHHHHHHHHHHhhhccccc
Confidence 3456777777666543211 111 23 789999999999986 3 7888888999999999882
Q ss_pred --cCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccCh
Q psy16512 146 --FNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPL 220 (815)
Q Consensus 146 --~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l 220 (815)
.++|| |+++..+|+++.......+... .+++++ +..++++.+++++ +++|++|++++ ++|...|+
T Consensus 105 ~~~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i-------~~~~~~v~~~~---~~g~~~~~ 174 (437)
T 3bb8_A 105 RALKPGDEVITVAAGFPTTVNPTIQNGLIPVFVDVDIPTYNVNASLIEAAV-------SDKTKAIMIAH---TLGNLFDL 174 (437)
T ss_dssp GSCCTTCEEEECSSSCHHHHHHHHHTTCEEEECCEETTTTEECGGGHHHHC-------CTTEEEEEEEC---GGGCCCCH
T ss_pred ccCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEeccCccCCcCHHHHHHhc-------CCCCeEEEEeC---CCCChhcH
Confidence 37888 9999999998876554432221 333433 3455677666533 46789999975 46778999
Q ss_pred HHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCC--CcEEEEccccccccCCc-ceEEEEecccccccCc
Q psy16512 221 SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQ--PDFISISFYKMFGYPTG-LGALIVKQKSAHVLNK 297 (815)
Q Consensus 221 ~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~--~D~vv~S~~K~~g~p~G-~G~l~~~~~~~~~l~~ 297 (815)
++|.++|+ ++|+++|+|++|+.|..+ +...++ +|+++.||+|.++.|.| .|+++.+++.+..+.+
T Consensus 175 ~~i~~l~~-----------~~~~~li~D~a~~~g~~~-~~~~~~~~~d~~~~s~~~~k~l~~g~gg~~~~~~~~~~~~~~ 242 (437)
T 3bb8_A 175 AEVRRVAD-----------KYNLWLIEDCCDALGSTY-DGKMAGTFGDIGTVSFYPAKHITMGEGGAVFTQSAELKSIIE 242 (437)
T ss_dssp HHHHHHHH-----------HHTCEEEEECTTCTTCEE-TTEETTSSSSEEEEECSTTSSSCCSSCEEEEESCHHHHHHHH
T ss_pred HHHHHHHH-----------HcCCEEEEECccccCceE-CCeecccccCEEEEECcCCcCCCCCCeEEEEeCCHHHHHHHH
Confidence 99999999 899999999999988654 444445 79999998776665545 5777776555432211
Q ss_pred ccccCceE------EEEecCCcccccccCccccc-----------cCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy16512 298 TFYGGGTV------KISMANENFHIKKDGLFEKF-----------EDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQ 360 (815)
Q Consensus 298 ~~~g~~~~------~~~~~~~~~~~~~~~~~~~~-----------~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~ 360 (815)
....++.. ........+.......+.++ ..++.+..+.+++ +++ ..+....++.+++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l-~~l---~~~~~~~~~~~~~~~ 318 (437)
T 3bb8_A 243 SFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGL-AQL---ERIEEFVEKRKANFK 318 (437)
T ss_dssp HHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHH-HHH---HHHHHHHHHHHHHHH
T ss_pred HHHHhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHHH-HHH---HHHHHHHHHHHHHHH
Confidence 11111110 00000000000000001111 1112222322222 223 332223366688899
Q ss_pred HHHHHHHhccccCCCCcEEEcCCCCCCCCCcccc--eEEEEEecCCCCccCHHHHHHhhhcCCcEeccCcc--CC-chhh
Q psy16512 361 YTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGN--IVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCH--CN-PGSC 435 (815)
Q Consensus 361 ~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~--i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~--~~-~~~~ 435 (815)
++.+.|+++ +++.++.... .....+ .+.+.+.... ..+..++.+.|.++||.++.+.. |. .+..
T Consensus 319 ~l~~~L~~~------~g~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~GI~v~~~~~~~~~~~p~~ 387 (437)
T 3bb8_A 319 YLKDALQSC------ADFIELPEAT---ENSDPSWFGFPITLKEDS--GVSRIDLVKFLDEAKVGTRLLFAGNLTRQPYF 387 (437)
T ss_dssp HHHHHGGGG------TTTEECCCCC---TTEECCCSSEEEEECGGG--SSCHHHHHHHHHHTTBCCBCCTTSSGGGSGGG
T ss_pred HHHHHhhcc------CCccccCCCC---CCCceeeEEEEEEECCcC--cCcHHHHHHHHHHCCCceeccCCcccccCchh
Confidence 999999887 5655553211 011112 2233332111 12345688999999999998754 21 1110
Q ss_pred hhhcC------CCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 436 QRFLG------LSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 436 ~~~~g------~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
. .++ +...+. ...+.||++++.++|++||++++++|++++.
T Consensus 388 ~-~~~~~~~~~~~~~~~-------------------~~~~~lrl~~~~~~t~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 388 H-DVKYRVVGELTNTDR-------------------IMNQTFWIGIYPGLTHDHLDYVVSKFEEFFG 434 (437)
T ss_dssp S-SCCCEECSCCHHHHH-------------------HHHHEEEECCSTTCCHHHHHHHHHHHHHHTT
T ss_pred h-ccCccccCCCcHHHH-------------------HhcCEEEecCCCCCCHHHHHHHHHHHHHHHc
Confidence 0 001 101100 1136799999999999999999999998764
No 167
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.84 E-value=1e-20 Score=218.45 Aligned_cols=355 Identities=13% Similarity=0.094 Sum_probs=208.1
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc----C--CCCC-ceeEEecCCchh
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF----N--TDSD-HYSVIFTSGATS 135 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g--~~~~-~~~iv~t~g~t~ 135 (815)
+.|........++.+++++.+.+....+..|.. . ..++|+.+++++ + .+.+ ..+|++|+|+|+
T Consensus 106 i~l~~g~~~~~~~~~v~a~~~~~~~~~y~~~~~------g----~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~ 175 (533)
T 3f6t_A 106 VNYCHTELGLNRDKVVAEWVNGAVANNYPVPDR------C----LVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTA 175 (533)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHTCSCCSSSS------C----CHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHH
T ss_pred eeccCCCCCcCCcHHHHHHHHHHHhCCCCCCcc------c----HHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHH
Confidence 334444444456777777777665433333331 2 456666666665 2 2221 124999999999
Q ss_pred hHHHHHhh-----hccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc----hhhhcchhhhhhhhhhhhhcCCCccE
Q psy16512 136 AIKTVSEY-----FEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV----DDARNMLNEFKESQENVENMRHSNSL 204 (815)
Q Consensus 136 al~~~~~a-----l~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~----~~~~~~~~~~~~l~~~~~~~~~~t~l 204 (815)
|+.+++.+ +. ++|| |++..++|+++.......+... .++++. +..++++.++++ +++++++
T Consensus 176 al~~~~~~l~~~~l~-~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~-------l~~~~k~ 247 (533)
T 3f6t_A 176 AIVYAFHSLAENHLL-KKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKL-------KDPSIKA 247 (533)
T ss_dssp HHHHHHHHHHHTTSS-CTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHH-------SCTTEEE
T ss_pred HHHHHHHHhhhhhcc-CCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHH-------hCCCCeE
Confidence 99999998 55 8999 8899989988765544433322 555543 234566666553 3578999
Q ss_pred EEEecccCCCccccChHHHHHHhhccccccccccC-CCCeEEEEecccccCCC-CCCCCC--CCCcEEEEccccccccCC
Q psy16512 205 FVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCS-RSNCFVLLDAATYCGSN-MLDLKQ--HQPDFISISFYKMFGYPT 280 (815)
Q Consensus 205 v~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~-~~gi~vivD~a~~~g~~-~~dl~~--~~~D~vv~S~~K~~g~p~ 280 (815)
|++++++||||.++|.+++.++++ .|+ ++|+++|+|++++.... ...+.. .+.++++.|+||.|| ++
T Consensus 248 v~l~~p~NPtG~~~~~~~l~~l~~--------la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~ 318 (533)
T 3f6t_A 248 LIVVNPTNPTSKEFDTNALNAIKQ--------AVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFG-CT 318 (533)
T ss_dssp EEEESSCTTTCBCCCHHHHHHHHH--------HHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHT-CG
T ss_pred EEEeCCCCCCccccCHHHHHHHHH--------HHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCC-Cc
Confidence 999999999999999996666555 344 58999999999863221 111111 134589999999999 66
Q ss_pred c--ceEEEEecc-----cccccCccc-------ccCceEEEEecC-Cccc---ccccCccccccCCCCChhHHHHHH-HH
Q psy16512 281 G--LGALIVKQK-----SAHVLNKTF-------YGGGTVKISMAN-ENFH---IKKDGLFEKFEDGTVNYLAIISLK-YG 341 (815)
Q Consensus 281 G--~G~l~~~~~-----~~~~l~~~~-------~g~~~~~~~~~~-~~~~---~~~~~~~~~~~~gt~~~~~~~al~-~a 341 (815)
| +|+++++++ +++.+.+.. ++.... .+. ..+. .............+.+.+...++. .+
T Consensus 319 G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~---~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a 395 (533)
T 3f6t_A 319 GWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVL---DPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFS 395 (533)
T ss_dssp GGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCS---CGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHH
T ss_pred ccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhcccc---CcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHH
Confidence 8 899999887 443332100 000000 000 0000 000000111223344555554432 13
Q ss_pred HHHHH------hhh---hh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecC----CCC-
Q psy16512 342 FDTME------KKR---KS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHK----DGT- 406 (815)
Q Consensus 342 l~~l~------~~~---~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~----~~~- 406 (815)
+..+. ... .. .+++++.++++.+.|. + ++.+..+. .+.++.+.+... .+.
T Consensus 396 ~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~-------~~~~~~~~-------~g~~~~~~l~~~~~~~~g~~ 460 (533)
T 3f6t_A 396 MTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-A-------PKDETDTN-------THYYSLIDIYRLAEKIYGKE 460 (533)
T ss_dssp HHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-C-------CCCCSTTB-------CCSEEEEEHHHHHHHHHCHH
T ss_pred HHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-C-------CccccCCC-------ceEEEEEehHhhhhhccchH
Confidence 33332 010 11 1666777777777775 5 33333332 245555555421 000
Q ss_pred -------ccCH-HHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC
Q psy16512 407 -------YYGY-SEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA 478 (815)
Q Consensus 407 -------~~~~-~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~ 478 (815)
..+. ..+.+++.++||.+.+|..|..+ .+++|+|++.
T Consensus 461 ~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~----------------------------------~~~iRls~a~- 505 (533)
T 3f6t_A 461 FRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAK----------------------------------PGELRVSQAN- 505 (533)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSS----------------------------------TTEEEEESSS-
T ss_pred HHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCC----------------------------------CCEEEEEEee-
Confidence 0011 23456667899999998776531 3789999975
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q psy16512 479 SNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 479 ~t~edi~~lv~~L~~~~~~ 497 (815)
.+++++++++++|.+++.+
T Consensus 506 ~~~e~i~~~i~~L~~~l~~ 524 (533)
T 3f6t_A 506 LPTEDYALIGKQVLELLKE 524 (533)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4789999999999988754
No 168
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.84 E-value=1.5e-20 Score=209.05 Aligned_cols=280 Identities=13% Similarity=0.070 Sum_probs=189.1
Q ss_pred HHHHHHHHhHcCC-----CC-CceeEEecCCchhhHHHHHhhhccCCCc-----EEEecCCCcchhhHHHHhhccc-eEE
Q psy16512 108 DQMRTKILQYFNT-----DS-DHYSVIFTSGATSAIKTVSEYFEFNEGS-----FIYLTDNHTSVLGMRELVKTNQ-IYS 175 (815)
Q Consensus 108 ~~~r~~la~~~g~-----~~-~~~~iv~t~g~t~al~~~~~al~~~~gd-----vv~~~~~h~s~~~~~~~~~~~g-~v~ 175 (815)
.++|+.++++++. ++ ++ |++|+|+++|+.+++.++. ++|| |++..+.|+++....+..+... .++
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~--i~~t~G~~~al~~~~~~l~-~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~ 147 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRY--IVVGTGSTQLCQAAVHALS-SLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWE 147 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSE--EEEEEHHHHHHHHHHHHHH-HTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCCCe--EEEeCChHHHHHHHHHHhc-CCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEec
Confidence 7899999998873 23 34 9999999999999999997 7887 7888888887665554433222 444
Q ss_pred cCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCC--eEEEEeccccc
Q psy16512 176 FSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSN--CFVLLDAATYC 253 (815)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~g--i~vivD~a~~~ 253 (815)
++.++ ++ .+++++|++++++||||.+++ +| +++ .++ +++|+|++++.
T Consensus 148 ~d~~~------l~----------~~~~k~v~l~~p~NPtG~~~~--~l---~~~----------~~~~~~~ii~De~y~~ 196 (391)
T 3bwn_A 148 GDAWG------FD----------KKGPYIELVTSPNNPDGTIRE--TV---VNR----------PDDDEAKVIHDFAYYW 196 (391)
T ss_dssp EESTT------CC----------CCSCEEEEEESSCTTTCCCCC--CC---C---------------CCCEEEEECTTCS
T ss_pred CCHHH------cC----------CCCCEEEEECCCCCCCchhHH--HH---HHH----------hhcCCCEEEEeCCCCC
Confidence 43321 11 146899999999999999996 33 431 244 99999999885
Q ss_pred CC-CCCCCCCCCCcEEEEccccccccCCc--ceEEEE-ecccccccCcccccCceEEEEecCCcccccccCccccccCCC
Q psy16512 254 GS-NMLDLKQHQPDFISISFYKMFGYPTG--LGALIV-KQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT 329 (815)
Q Consensus 254 g~-~~~dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 329 (815)
+. .++.. ..+.++++.|+||.|| ++| +||+++ ++++++.+.... ....++
T Consensus 197 ~~~~~l~~-~~~~~i~~~S~SK~~g-~~GlRiG~~~~~~~~l~~~l~~~~------------------------~~~~~~ 250 (391)
T 3bwn_A 197 PHYTPITR-RQDHDIMLFTFSKITG-HAGSRIGWALVKDKEVAKKMVEYI------------------------IVNSIG 250 (391)
T ss_dssp TTTSCCCC-CBCCSEEEEEHHHHHS-CGGGCEEEEEECCHHHHHHHHHHH------------------------HHHHSS
T ss_pred CCCCcccc-CCCCeEEEEechhhcC-CCccceEEEEecCHHHHHHHHHHh------------------------cccccC
Confidence 42 22322 3457899999999999 668 599998 667665553221 111235
Q ss_pred CChhHHHHHHHHHHHHH----------hhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCC-C-----CCcc
Q psy16512 330 VNYLAIISLKYGFDTME----------KKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYG-E-----SKYQ 392 (815)
Q Consensus 330 ~~~~~~~al~~al~~l~----------~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~-~-----~~~~ 392 (815)
.+.+...++..+++... ..-..+ ++++++++++.+.|+++ |++++..+.+.. + ....
T Consensus 251 ~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~p~~~~~~f~~~~~~~~ 324 (391)
T 3bwn_A 251 VSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKES------DAFTLPKYPEAFCNYFGKSLESY 324 (391)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTC------SSEECCCCCCEEETTTTEEECCC
T ss_pred CCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhC------CCcccccCCccccccccccCCCc
Confidence 56677777767776432 111122 77888889999999887 567765443200 0 0112
Q ss_pred cceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEE
Q psy16512 393 GNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIR 472 (815)
Q Consensus 393 ~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iR 472 (815)
+.++++.+++ ... +.+.|.++||.+++|..|.. ..+++|
T Consensus 325 g~~~~~~~~~--~~~-----~~~~l~~~gV~v~pg~~fg~----------------------------------~~~~iR 363 (391)
T 3bwn_A 325 PAFAWLGTKE--ETD-----LVSELRRHKVMSRAGERCGS----------------------------------DKKHVR 363 (391)
T ss_dssp CSEEEEEESS--SCC-----HHHHHHHTTEECEEGGGGTC----------------------------------CTTEEE
T ss_pred ceEEEecCCc--HHH-----HHHHHHHCCEEEccCCCCCC----------------------------------CCCEEE
Confidence 3467777753 222 77888999999999876521 137899
Q ss_pred EeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 473 ISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 473 vs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
||++ ++++++++++++|++++.
T Consensus 364 is~~--~~~e~i~~~~~~L~~~~~ 385 (391)
T 3bwn_A 364 VSML--SREDVFNVFLERLANMKL 385 (391)
T ss_dssp EESC--SCHHHHHHHHHHHHSCC-
T ss_pred EEec--CCHHHHHHHHHHHHHHHH
Confidence 9998 388999999999988654
No 169
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.84 E-value=3.8e-20 Score=207.24 Aligned_cols=294 Identities=13% Similarity=0.018 Sum_probs=188.9
Q ss_pred HHHHHHHHHhHc-CCC-CC-ceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch-h
Q psy16512 107 IDQMRTKILQYF-NTD-SD-HYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD-D 180 (815)
Q Consensus 107 ~~~~r~~la~~~-g~~-~~-~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~-~ 180 (815)
..++|+.+++++ +.. ++ ..+|++|+|+++|+.+++.++. ++|| |++..+.|+++.......+... .+++..+ .
T Consensus 81 ~~~lr~~la~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~~~-~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~ 159 (413)
T 3t18_A 81 EKDYRKIVIDTLFGPYKPEGYISAIATPGGTGAIRSAIFSYL-DEGDPLICHDYYWAPYRKICEEFGRNFKTFEFFTDDF 159 (413)
T ss_dssp CHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHC-CSSCEEEEESSCCTHHHHHHHHHTCEEEEECCBCTTS
T ss_pred CHHHHHHHHHHHhcccCccccCcEEEcCccHHHHHHHHHHhc-CCCCEEEECCCCcccHHHHHHHhCCeEEEeeccCCCC
Confidence 556777777754 221 22 1149999999999999999997 8999 8888888887766555543333 4555333 3
Q ss_pred hhcchhhhhhhhhhhhhcCCCcc-EEEEecc-cCCCccccChHHHHHHhhccccccccccC------CCCeEEEEecccc
Q psy16512 181 ARNMLNEFKESQENVENMRHSNS-LFVYPAE-SNFSGTKYPLSWCNTVHRNHVFKKHFKCS------RSNCFVLLDAATY 252 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~-lv~i~~~-~n~tG~~~~l~~I~~l~~~~~~~~~~~~~------~~gi~vivD~a~~ 252 (815)
.++++.++++++. ...++++ ++++++| +||||.++|.+++.++++ .|+ ++|+++|+|+++.
T Consensus 160 ~~d~~~l~~~l~~---~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~--------~~~~~~~~~~~~~~li~De~y~ 228 (413)
T 3t18_A 160 AFNIDVYKEAIDE---GIRDSDRIASLINSPGNNPTGYSLSDEEWDEVIT--------FLKEKAEDKDKKITLIVDVAYL 228 (413)
T ss_dssp SBCHHHHHHHHHH---HHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHH--------HHHHHTTSTTCEEEEEEECTTG
T ss_pred CcCHHHHHHHHHH---HhhcCCCEEEEEeCCCCCCCCCCCCHHHHHHHHH--------HHHHHhhccCCcEEEEEecccc
Confidence 6677777765531 1112466 8888998 999999999999888887 566 7999999999864
Q ss_pred cCC-C---CCC----CCCCCCc---EEEEccccccccCCc--ceEEEE---ecccccccCcccccCceEEEEecCCcccc
Q psy16512 253 CGS-N---MLD----LKQHQPD---FISISFYKMFGYPTG--LGALIV---KQKSAHVLNKTFYGGGTVKISMANENFHI 316 (815)
Q Consensus 253 ~g~-~---~~d----l~~~~~D---~vv~S~~K~~g~p~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~ 316 (815)
.-. . ... ....+.+ +++.|+||.|| ++| +|++++ ++++++.+.......
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~-~~G~riG~~~~~~~~~~~~~~~~~~~~~~-------------- 293 (413)
T 3t18_A 229 EFAGDGDQQRKFFEKFSNLPRNLFVVVAFSMSKSHT-AYGLRSGAAVGISSSKEIIEEFEASLAHS-------------- 293 (413)
T ss_dssp GGSSSSSTTTGGGGGGTTCCTTEEEEEEEEHHHHTT-CGGGCCEEEEEEESCHHHHHHHHHHHHHH--------------
T ss_pred cccCChhhHHHHHHHHhhcCCCeeEEEEEecCccCC-CcCcCcEEEEEecCCHHHHHHHHHHHHHh--------------
Confidence 211 1 011 1112333 67789999999 557 899998 777766553221000
Q ss_pred cccCccccccCCCCChhHHHHHHHHHHHHH------hhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCC
Q psy16512 317 KKDGLFEKFEDGTVNYLAIISLKYGFDTME------KKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESK 390 (815)
Q Consensus 317 ~~~~~~~~~~~gt~~~~~~~al~~al~~l~------~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~ 390 (815)
.+....+++..+..++..+++... ......++.+++++++.+.|+++ +++++.+..
T Consensus 294 ------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-------g~~~~~~~~----- 355 (413)
T 3t18_A 294 ------ARCNWSNGTHAAQNILIELERAENKKIYEQELVDLRNMLKSRADVFVTAAKEN-------KLTMIPYFG----- 355 (413)
T ss_dssp ------HHHHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TCCCBCCCS-----
T ss_pred ------hhccccCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCCccCCCc-----
Confidence 000112456666666666554321 11111267788888888888876 555554432
Q ss_pred cccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceE
Q psy16512 391 YQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGS 470 (815)
Q Consensus 391 ~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~ 470 (815)
+.++++.+ . +..++.+.|.++||.+++| .++
T Consensus 356 --~~~~~~~~--~-----~~~~~~~~l~~~gv~v~~g----------------------------------------~~~ 386 (413)
T 3t18_A 356 --GFFTFIPT--D-----KAFDIVKDLEKENIFTIPS----------------------------------------AKG 386 (413)
T ss_dssp --SSCEEEEC--S-----CHHHHHHHHHHTTEECEEC----------------------------------------SSE
T ss_pred --eEEEEeCC--C-----CHHHHHHHHHhCCEEEecC----------------------------------------CCc
Confidence 33444433 1 2335778889999999875 268
Q ss_pred EEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 471 IRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 471 iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
+|+|++..++++.++++.++|+++
T Consensus 387 iRis~~~~~~~~~l~~l~~~l~~~ 410 (413)
T 3t18_A 387 IRVAICGVGEEKIPKLVQRLAFYT 410 (413)
T ss_dssp EEECTTTSCGGGHHHHHHHHHHHH
T ss_pred eEEEEeeCCHHHHHHHHHHHHHHH
Confidence 999999666555566666665553
No 170
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.83 E-value=1.6e-19 Score=202.87 Aligned_cols=341 Identities=13% Similarity=0.061 Sum_probs=209.2
Q ss_pred chhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EE
Q psy16512 74 SQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FI 152 (815)
Q Consensus 74 p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv 152 (815)
|+.+.+++.+.+....|.+ .... +.++++.+++++|.+ + +++|+|+++|+.+++.++. +|| |+
T Consensus 31 p~~~~~a~~~~~~~~~y~~------~~~~----~~~l~~~la~~~~~~--~--v~~~~ggt~al~~~l~~l~--~gd~Vl 94 (424)
T 2po3_A 31 RARLYERLDRALDSQWLSN------GGPL----VREFEERVAGLAGVR--H--AVATCNATAGLQLLAHAAG--LTGEVI 94 (424)
T ss_dssp HHHHHHHHHHHHHHTCCSS------SCHH----HHHHHHHHHHHHTSS--E--EEEESCHHHHHHHHHHHHT--CCSEEE
T ss_pred hHHHHHHHHHHHhcCCccc------CCHH----HHHHHHHHHHHhCCC--e--EEEeCCHHHHHHHHHHHcC--CCCEEE
Confidence 4567777766554322221 1233 789999999999974 3 9999999999999999984 577 99
Q ss_pred EecCCCcchhhHHHHhhccc-eEEcCc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhcc
Q psy16512 153 YLTDNHTSVLGMRELVKTNQ-IYSFSV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNH 230 (815)
Q Consensus 153 ~~~~~h~s~~~~~~~~~~~g-~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~ 230 (815)
++..+|+++.......+... .+++++ +..++++.+++++ .+++++|+++ |+||...++++|.++|+
T Consensus 95 v~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i-------~~~~~~v~~~---~~tG~~~~l~~i~~la~-- 162 (424)
T 2po3_A 95 MPSMTFAATPHALRWIGLTPVFADIDPDTGNLDPDQVAAAV-------TPRTSAVVGV---HLWGRPCAADQLRKVAD-- 162 (424)
T ss_dssp EESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGC-------CTTEEEEEEE---CGGGCCCCHHHHHHHHH--
T ss_pred ECCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhh-------CcCCcEEEEE---CCCCCcCCHHHHHHHHH--
Confidence 99999988876544433222 455554 3345666666543 4578998885 48999999999999999
Q ss_pred ccccccccCCCCeEEEEecccccCCCCCCCCCC--CCcEEEEccc--cccccCCcceEEEEe-cccccccCcccccCceE
Q psy16512 231 VFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQH--QPDFISISFY--KMFGYPTGLGALIVK-QKSAHVLNKTFYGGGTV 305 (815)
Q Consensus 231 ~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~--~~D~vv~S~~--K~~g~p~G~G~l~~~-~~~~~~l~~~~~g~~~~ 305 (815)
++|+++|+|++++.|.. .+.... ..|+++.|+| |+++ +..+|+++.+ +++++.+.+....+...
T Consensus 163 ---------~~~~~li~Dea~~~g~~-~~~~~~~~~~di~~~S~sk~K~l~-~~~~G~~v~~~~~l~~~l~~~~~~~~~~ 231 (424)
T 2po3_A 163 ---------EHGLRLYFDAAHALGCA-VDGRPAGSLGDAEVFSFHATKAVN-AFEGGAVVTDDADLAARIRALHNFGFDL 231 (424)
T ss_dssp ---------HTTCEEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHHBTTTTC
T ss_pred ---------HcCCEEEEECccccCCe-ECCeecccccCEEEEeCCCCCCcc-CCCCeEEEeCCHHHHHHHHHHHhcCccc
Confidence 89999999999987553 221111 2589999998 7777 4347898888 56666554332211110
Q ss_pred EEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCC-C
Q psy16512 306 KISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHD-T 384 (815)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~-~ 384 (815)
.+. ....|........++..++..+.......++..++++++.+.|.++ |+++++.+ .
T Consensus 232 -------~~~--------~~~~g~~~~~~~~~aa~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~ 290 (424)
T 2po3_A 232 -------PGG--------SPAGGTNAKMSEAAAAMGLTSLDAFPEVIDRNRRNHAAYREHLADL------PGVLVADHDR 290 (424)
T ss_dssp -------TTC--------CTTCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC------TTEEECCGGG
T ss_pred -------ccc--------ccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------CCccccCCCC
Confidence 000 0001111011112222233323333222377788888888888877 68888752 2
Q ss_pred CCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhh-hh-hcCCC----HHHHHHHhhcCCccCC
Q psy16512 385 DYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSC-QR-FLGLS----DITIKFHFQQGHICGD 458 (815)
Q Consensus 385 ~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~-~~-~~g~~----~~~~~~~~~~~~~c~~ 458 (815)
. ......++.+.++... ..++..++.+.|.++||.++. .|.++.. .. +.++. +..+ +
T Consensus 291 ~---~~~~~~~~~i~~~~~~-~~~~~~~l~~~L~~~gI~v~~--~~~~~~~~~~~~~~~g~~~~~~~~-r---------- 353 (424)
T 2po3_A 291 H---GLNNHQYVIVEIDEAT-TGIHRDLVMEVLKAEGVHTRA--YFSPGCHELEPYRGQPHAPLPHTE-R---------- 353 (424)
T ss_dssp G---SCCCCCCEEEEECHHH-HSSCHHHHHHHHHHTTEECBC--TTCSCGGGSTTTTTSCCCCCHHHH-H----------
T ss_pred C---CccccEEEEEEECCcc-chhhHHHHHHHHHHCCCceec--ccCCccccchhhhhcCCCCChhHH-H----------
Confidence 1 0011245666665200 002334688889999999987 3332110 00 00000 0000 0
Q ss_pred cccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 459 DKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 459 ~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
.....+|++++.+++++|+++++++|++++...
T Consensus 354 -------~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~ 386 (424)
T 2po3_A 354 -------LAARVLSLPTGTAIGDDDIRRVADLLRLCATRG 386 (424)
T ss_dssp -------HHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -------HhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 002458898889999999999999999887543
No 171
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.83 E-value=2.6e-20 Score=207.65 Aligned_cols=328 Identities=11% Similarity=0.045 Sum_probs=196.2
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCC------CCceeEEe--cCCch
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTD------SDHYSVIF--TSGAT 134 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~------~~~~~iv~--t~g~t 134 (815)
.|+|..+.+...+.+.+++.+.... ..++. +..... ..++|+.++++++.. +++ |++ |+|++
T Consensus 37 ~~~d~~~~~~~~~~v~~a~~~~~~~--~~~~~--Y~~~~g----~~~lr~~ia~~~~~~~~~~~~~~~--i~~v~t~G~~ 106 (401)
T 7aat_A 37 AYRDDNGKPYVLNCVRKAEAMIAAK--KMDKE--YLPIAG----LADFTRASAELALGENSEAFKSGR--YVTVQGISGT 106 (401)
T ss_dssp SCCCTTSCCCCCHHHHHHHHHHHHT--TCCCC--CCCTTC----CHHHHHHHHHHHHCTTCHHHHTTC--EEEEEEEHHH
T ss_pred eEECCCCCEechHHHHHHHHHhccc--ccccC--CCCCCC----CHHHHHHHHHHhcCCCccccccCc--eEEEecCcch
Confidence 4566666666666777766554331 11222 111122 678888898888643 665 877 99999
Q ss_pred hhHHHHHhhhc--cCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc--hhhhcchhhhhhhhhhhhhcCCCccEEEEe
Q psy16512 135 SAIKTVSEYFE--FNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV--DDARNMLNEFKESQENVENMRHSNSLFVYP 208 (815)
Q Consensus 135 ~al~~~~~al~--~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~--~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~ 208 (815)
+|+.+++.++. .++|| |+++.+.|+.+....+..+... .++++. ++.++++.+++.+. ...+++++++++
T Consensus 107 ~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~~~~v~i~ 182 (401)
T 7aat_A 107 GSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDIS----KIPEKSIILLHA 182 (401)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHT----TSCTTCEEEEES
T ss_pred HHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHH----hCCCCcEEEEeC
Confidence 99998877653 27888 8899988888766655544333 556543 34566665555442 234678999999
Q ss_pred cccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC-CC-----CC----CCCCCcEEEEcccccccc
Q psy16512 209 AESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-ML-----DL----KQHQPDFISISFYKMFGY 278 (815)
Q Consensus 209 ~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-~~-----dl----~~~~~D~vv~S~~K~~g~ 278 (815)
++|||||..++.+++.++++ .|+++|+++++|+++..... .. .+ ...+..+++.|+||.||
T Consensus 183 ~p~NPtG~~~~~~~l~~i~~--------~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~- 253 (401)
T 7aat_A 183 CAHNPTGVDPRQEQWKELAS--------VVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMG- 253 (401)
T ss_dssp SSCTTTCCCCCHHHHHHHHH--------HHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC-
T ss_pred CCCCCCCCCCCHHHHHHHHH--------HHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccc-
Confidence 99999999998666554444 23389999999999653321 11 01 12345688899999999
Q ss_pred CCc--ceEEEEe---cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH-------HH
Q psy16512 279 PTG--LGALIVK---QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT-------ME 346 (815)
Q Consensus 279 p~G--~G~l~~~---~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~-------l~ 346 (815)
++| +|++++. ++..+.+....... .+....+++.....++..+++. ..
T Consensus 254 ~~G~RiG~l~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 313 (401)
T 7aat_A 254 LYGERAGAFTVICRDAEEAKRVESQLKIL--------------------IRPMYSNPPMNGARIASLILNTPELRKEWLV 313 (401)
T ss_dssp CGGGCEEEEEEECSSHHHHHHHHHHHHHH--------------------HHHHHSSCCHHHHHHHHHHHHCHHHHHHHHH
T ss_pred cccCceEEEEEEeCCHHHHHHHHHHHHHH--------------------HHhccCCCChHHHHHHHHHhCCHHHHHHHHH
Confidence 668 7999873 22111111000000 0001112333333333333321 11
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEecc
Q psy16512 347 KKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRT 426 (815)
Q Consensus 347 ~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~ 426 (815)
......++++++++++.+.|.++.. .+++.+..+. ++++.+ .+. +...+..++.++||.+.+
T Consensus 314 ~~~~~~~~~~~~r~~l~~~L~~~~~---~~~~~~~~~~--------~~~~~~--~~~-----~~~~~~~ll~~~gi~v~~ 375 (401)
T 7aat_A 314 EVKGMADRIISMRTQLVSNLKKEGS---SHNWQHITDQ--------IGMFCF--TGL-----KPEQVERLTKEFSIYMTK 375 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC---CSCCHHHHHC--------CSSEEE--CCC-----CHHHHHHHHHHHCEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC---CCCCceecCC--------cceEEe--cCC-----CHHHHHHHHHhCCEeccC
Confidence 1111227888889999999987610 0123333332 333333 122 223466666888998742
Q ss_pred CccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 427 GCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 427 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.+|+|++..+++ +|++++++|++++
T Consensus 376 -------------------------------------------~~Ris~~~~~~~-~i~~~~~~l~~~~ 400 (401)
T 7aat_A 376 -------------------------------------------DGRISVAGVASS-NVGYLAHAIHQVT 400 (401)
T ss_dssp -------------------------------------------TCEEEGGGCCTT-THHHHHHHHHHHH
T ss_pred -------------------------------------------CCeEEeccCChh-hHHHHHHHHHHHh
Confidence 269999877665 4999999999865
No 172
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.83 E-value=1.7e-19 Score=200.80 Aligned_cols=322 Identities=14% Similarity=0.121 Sum_probs=208.1
Q ss_pred hhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+. +..++.+.+++.+.+... .+..+.+ .... .+++++++++++|. ++ +++|+|++
T Consensus 39 g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~--~~~~~~~-~~~~----~~~l~~~la~~~g~--~~--v~~~~gg~ 107 (397)
T 2ord_A 39 GNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKL--IHCSNLF-WNRP----QMELAELLSKNTFG--GK--VFFANTGT 107 (397)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHC--SCCCTTS-EEHH----HHHHHHHHHHTTTS--CE--EEEESSHH
T ss_pred CCEEEECCccccccccCCCCHHHHHHHHHHHHhc--ccCcccc-CCHH----HHHHHHHHHHhcCC--Ce--EEEeCCHH
Confidence 3456665433 234678888887776542 2222111 2233 78899999999984 44 99999999
Q ss_pred hhHHHHHhhhccC-----CC-c-EEEecCCC-cchhhHHHHhhcc----c-------eEEcCchhhhcchhhhhhhhhhh
Q psy16512 135 SAIKTVSEYFEFN-----EG-S-FIYLTDNH-TSVLGMRELVKTN----Q-------IYSFSVDDARNMLNEFKESQENV 195 (815)
Q Consensus 135 ~al~~~~~al~~~-----~g-d-vv~~~~~h-~s~~~~~~~~~~~----g-------~v~~~~~~~~~~~~~~~~l~~~~ 195 (815)
+|+.+++.++... +| + +|+....| .+...+....+.. + ...+.. .+++.+++
T Consensus 108 ~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~---~d~~~l~~------ 178 (397)
T 2ord_A 108 EANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF---NNVEDLRR------ 178 (397)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT---TCHHHHHH------
T ss_pred HHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC---CCHHHHHH------
Confidence 9999999887510 43 4 77776655 4444444443322 0 122221 14444444
Q ss_pred hhcCCCccEEEEecccCCCcc-ccC---hHHHHHHhhccccccccccCCCCeEEEEecccccCCC----CCCCCCC--CC
Q psy16512 196 ENMRHSNSLFVYPAESNFSGT-KYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN----MLDLKQH--QP 265 (815)
Q Consensus 196 ~~~~~~t~lv~i~~~~n~tG~-~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~----~~dl~~~--~~ 265 (815)
.+.+++++|++++++||||. .++ +++|.++|+ ++|+++|+|++++ +.. +..+..+ .+
T Consensus 179 -~l~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~-----------~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~ 245 (397)
T 2ord_A 179 -KMSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCD-----------EYDALLVFDEVQC-GMGRTGKLFAYQKYGVVP 245 (397)
T ss_dssp -HCCTTEEEEEECSEECTTTCEECCHHHHHHHHHHHH-----------HHTCEEEEECTTT-TTTTTSSSSHHHHHTCCC
T ss_pred -HhhcCeEEEEEecccCCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEEeccc-CCccCccchhhhhhCCCC
Confidence 33467999999999999999 555 555666676 8999999999986 321 1111112 37
Q ss_pred cEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH
Q psy16512 266 DFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM 345 (815)
Q Consensus 266 D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l 345 (815)
|++ |++|+|+++.++|+++++++++ .+.+.. .....+.+.....++.++++.+
T Consensus 246 d~~--s~sK~~~~G~r~G~~~~~~~~~-~l~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~ 298 (397)
T 2ord_A 246 DVL--TTAKGLGGGVPIGAVIVNERAN-VLEPGD------------------------HGTTFGGNPLACRAGVTVIKEL 298 (397)
T ss_dssp SEE--EECGGGGTTSCCEEEEECSTTC-CCCTTS------------------------SCCSSTTCHHHHHHHHHHHHHH
T ss_pred Cee--eeccccCCCcCeEEEEEchHhc-ccCCCC------------------------cCCCCCCCHHHHHHHHHHHHHH
Confidence 865 6789999323489999998765 443210 0111245677777777888776
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEec
Q psy16512 346 EKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLR 425 (815)
Q Consensus 346 ~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~ 425 (815)
.. ....++.+++++++.+.|+++.. +.+.+... ...++++++.++.. .+..++.+.|.++||.++
T Consensus 299 ~~-~~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~~--------~~~g~~~~~~~~~~----~~~~~l~~~l~~~gi~v~ 363 (397)
T 2ord_A 299 TK-EGFLEEVEEKGNYLMKKLQEMKE--EYDVVADV--------RGMGLMIGIQFREE----VSNREVATKCFENKLLVV 363 (397)
T ss_dssp TS-TTHHHHHHHHHHHHHHHHHHHHH--HCTTEEEE--------EEETTEEEEEECTT----SCHHHHHHHHHHTTEECE
T ss_pred Hh-CCHHHHHHHHHHHHHHHHHHHHH--hCCceEEE--------EEEeEEEEEEECCh----HHHHHHHHHHHHCCCEEc
Confidence 54 22238888999999998877510 00222212 12367888887642 123457788888999987
Q ss_pred cCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 426 TGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 426 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
+|. .+++|+++++..+++|+++++++|++++.
T Consensus 364 ~~~---------------------------------------~~~iRis~~~~~~~e~i~~~~~~l~~~l~ 395 (397)
T 2ord_A 364 PAG---------------------------------------NNTIRFLPPLTVEYGEIDLAVETLKKVLQ 395 (397)
T ss_dssp EET---------------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCC---------------------------------------CCEEEEECCcCCCHHHHHHHHHHHHHHHh
Confidence 641 26899999888999999999999998764
No 173
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.83 E-value=2.7e-20 Score=207.12 Aligned_cols=324 Identities=12% Similarity=0.079 Sum_probs=199.8
Q ss_pred hhhhhhcccccchhhHHHHHH-HHhhc-cccCCCChhhhhhhhhhhHHHHHHHHHhHcCC------CCCceeEEecCCch
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIE-QLKEN-IFSHPHGNSVLSDFCVSEIDQMRTKILQYFNT------DSDHYSVIFTSGAT 134 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~-~l~~~-~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~------~~~~~~iv~t~g~t 134 (815)
.|+|..+.++.++.+.+++.+ .+... ... +..... ..++|+.++++++. +++..+|++|+|++
T Consensus 35 ~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~-----y~~~~g----~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~ 105 (397)
T 3fsl_A 35 LYYNEDGIIPQLQAVAEAEARLNAQPHGASL-----YLPMEG----LNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGS 105 (397)
T ss_dssp CCCCTTSCCCCCHHHHHHHHHHHHSCCCCCC-----CCCTTC----CHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHH
T ss_pred EEECCCCCccCcHHHHHHHHhhccCcccccc-----CCCCCc----hHHHHHHHHHHHhcCCcccccccceEEEEcCCcH
Confidence 355666666777888888877 65431 111 111122 67888889988854 45511399999999
Q ss_pred hhHHHHH--hhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEc--CchhhhcchhhhhhhhhhhhhcCCCccEEEEe
Q psy16512 135 SAIKTVS--EYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSF--SVDDARNMLNEFKESQENVENMRHSNSLFVYP 208 (815)
Q Consensus 135 ~al~~~~--~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~--~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~ 208 (815)
+|+.+++ .++. ++|| |++....|+++....+..+... .++. +.+..++++.++++++ ...+++++++++
T Consensus 106 ~a~~~~~~~~~~~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~~~~v~~~ 180 (397)
T 3fsl_A 106 GALKVGADFLKRY-FPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLK----TLQAGSIVLLHP 180 (397)
T ss_dssp HHHHHHHHHHHHH-CTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHT----TCCTTCEEEECS
T ss_pred HHHHHHHHHHHhc-CCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHH----hCCCCCEEEEeC
Confidence 9999995 4444 7898 8888888877655544433222 4444 2244567777776543 123568999999
Q ss_pred cccCCCccccChHH---HHHHhhccccccccccCCCCeEEEEecccccCCCCC-----C---C-CCCCCcEEEEcccccc
Q psy16512 209 AESNFSGTKYPLSW---CNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNML-----D---L-KQHQPDFISISFYKMF 276 (815)
Q Consensus 209 ~~~n~tG~~~~l~~---I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~-----d---l-~~~~~D~vv~S~~K~~ 276 (815)
+++||||.+++.++ |.++|+ ++|+++|+|++++...... . + ...+..+++.|++|.|
T Consensus 181 ~p~nptG~~~~~~~l~~l~~~~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 249 (397)
T 3fsl_A 181 CCHNPTGADLTNDQWDAVIEILK-----------ARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIF 249 (397)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHH-----------HTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTT
T ss_pred CCCCCCCcCCCHHHHHHHHHHHH-----------hCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccc
Confidence 99999999998775 555555 8999999999976443210 0 1 1234568889999999
Q ss_pred ccCCc--ceEEEEec---ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH-------
Q psy16512 277 GYPTG--LGALIVKQ---KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT------- 344 (815)
Q Consensus 277 g~p~G--~G~l~~~~---~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~------- 344 (815)
| ++| +|++++.. +.++.+...... ..+...++++..+..++..++..
T Consensus 250 ~-~~G~riG~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 308 (397)
T 3fsl_A 250 S-LYGERVGGLSVMCEDAEAAGRVLGQLKA--------------------TVRRNYSSPPNFGAQVVAAVLNDEALKASW 308 (397)
T ss_dssp T-CGGGCCEEEEEECSSHHHHHHHHHHHHH--------------------HHHTTTSSCCSHHHHHHHHHHTSHHHHHHH
T ss_pred c-CcCCCeeEEEEecCCHHHHHHHHHHHHH--------------------HHHhccCCCCHHHHHHHHHHhcCHHHHHHH
Confidence 9 667 79988632 222222110000 00111223444555554444432
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEe
Q psy16512 345 MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQL 424 (815)
Q Consensus 345 l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v 424 (815)
........++++++++++.+.|+++.. ..++.+..+.. +.++.+.+ +...+.+.+.++||.+
T Consensus 309 ~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~-------~~~~~~~~--------~~~~~~~~l~~~gi~v 370 (397)
T 3fsl_A 309 LKEVEEMRTRILAMRQELVKVLSTEMP---ERNFDYLLNQR-------GMFSYTGL--------SAAQVDRLREEFGVYL 370 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCT---TSCCTHHHHCC-------SSEEECCC--------CHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCceeecCCc-------eEEEecCC--------CHHHHHHHHHhCCEEE
Confidence 111111227888889999999988610 00344443321 33333222 2234777888999998
Q ss_pred ccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 425 RTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 425 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
++| + |+|++.. ++++|++++++|+++
T Consensus 371 ~~g-----------------------------------------~--Ris~~~~-~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 371 IAS-----------------------------------------G--RMCVAGL-NTANVQRVAKAFAAV 396 (397)
T ss_dssp CTT-----------------------------------------C--EEEGGGC-CTTTHHHHHHHHHHH
T ss_pred CCC-----------------------------------------C--eEEEEec-CHhhHHHHHHHHHhh
Confidence 753 3 9999755 457799999999875
No 174
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.83 E-value=1.3e-19 Score=201.58 Aligned_cols=307 Identities=11% Similarity=0.011 Sum_probs=196.5
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhH-HHH-hhccc--eEEcCchhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGM-REL-VKTNQ--IYSFSVDDA 181 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~-~~~-~~~~g--~v~~~~~~~ 181 (815)
.+++++++++++|.+. +++++++++|+.+ +.++. ++|| ||+....|.+.+.. ... +...| ...++.+
T Consensus 69 ~~~l~~~la~l~g~~~----~~~~~sG~~Ai~~-~~~l~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 140 (400)
T 3nmy_A 69 RFAYERCVAALEGGTR----AFAFASGMAATST-VMELL-DAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLT-- 140 (400)
T ss_dssp HHHHHHHHHHHHTCSE----EEEESSHHHHHHH-HHTTS-CTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTT--
T ss_pred HHHHHHHHHHHhCCCC----EEEecCHHHHHHH-HHHHc-CCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCC--
Confidence 7889999999999752 5666666999998 45666 8998 88888888865543 333 44445 4444433
Q ss_pred hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCC
Q psy16512 182 RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLK 261 (815)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~ 261 (815)
+++.+++ .+.+++++|++++++||+|.+.|+++|+++|+ ++|+++|+|++++.+.....+
T Consensus 141 -d~~~l~~-------~i~~~~~~v~~e~~~np~G~~~~l~~i~~la~-----------~~g~~livDe~~~~~~~~~~~- 200 (400)
T 3nmy_A 141 -DPAAFKA-------AIRADTKMVWIETPTNPMLKLVDIAAIAVIAR-----------KHGLLTVVDNTFASPMLQRPL- 200 (400)
T ss_dssp -SHHHHHH-------HCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH-----------HTTCEEEEECTTTHHHHCCGG-
T ss_pred -CHHHHHH-------HhccCCCEEEEECCCCCCCeeecHHHHHHHHH-----------HcCCEEEEECCCcccccCChh-
Confidence 4444544 33468999999999999999999999999999 899999999998865422112
Q ss_pred CCCCcEEEEccccccccCC-cceE--EEEe-cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHH
Q psy16512 262 QHQPDFISISFYKMFGYPT-GLGA--LIVK-QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIIS 337 (815)
Q Consensus 262 ~~~~D~vv~S~~K~~g~p~-G~G~--l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a 337 (815)
.+++|+++.|++|++++|. .+|. ++++ +++.+.++... +....+.+....+.
T Consensus 201 ~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~------------------------~~~g~~~~~~~a~~ 256 (400)
T 3nmy_A 201 SLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQ------------------------NSIGGVQGPFDSFL 256 (400)
T ss_dssp GGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHH------------------------HHHCCBCCHHHHHH
T ss_pred hcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHH------------------------HhcCCCCCHHHHHH
Confidence 3479999999999999663 2444 4443 34444332211 11122334344333
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCCC---------CcccceEEEEEecCCCCc
Q psy16512 338 LKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGES---------KYQGNIVNFNLLHKDGTY 407 (815)
Q Consensus 338 l~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~~---------~~~~~i~~f~~~~~~~~~ 407 (815)
+..+++.+ ...+++..+.+..+.+.|++. |.+. +..|.-.+.+ ...+++++|.+++.. +
T Consensus 257 ~l~~l~~l---~~r~~~~~~~a~~l~~~L~~~------p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~-~- 325 (400)
T 3nmy_A 257 ALRGLKTL---PLRMRAHCENALALAQWLETH------PAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGF-D- 325 (400)
T ss_dssp HHHHHTTH---HHHHHHHHHHHHHHHHHHTTC------TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH-H-
T ss_pred HHHhHhHH---HHHHHHHHHHHHHHHHHHHcC------CCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcH-H-
Confidence 33444333 223467778888888888876 5554 3333210000 235789999996421 1
Q ss_pred cCHHHHHHhhhcCCcEeccCccCC---chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHH
Q psy16512 408 YGYSEVQNLANLKKIQLRTGCHCN---PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDV 484 (815)
Q Consensus 408 ~~~~~v~~~l~~~gI~v~~g~~~~---~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi 484 (815)
....+.+.+...++.++.|..++ ++....+..++++...+. |..++.+|+|+|.++.++.+
T Consensus 326 -~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~---------------gi~~~liRlsvGle~~~dli 389 (400)
T 3nmy_A 326 -AAKRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQL---------------GISDALVRLSVGIEDLGDLR 389 (400)
T ss_dssp -HHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHH---------------TCCTTEEEEECCSSCHHHHH
T ss_pred -HHHHHHHcCCcceEecCCCCCcceeeCccccccccCCHHHHHhc---------------CCCcCeEEEEeCcCCHHHHH
Confidence 11236667777777777775543 333334455555544333 45568999999988776666
Q ss_pred HHHHHHHH
Q psy16512 485 KYFLSFLN 492 (815)
Q Consensus 485 ~~lv~~L~ 492 (815)
+.|.++|+
T Consensus 390 ~dl~~al~ 397 (400)
T 3nmy_A 390 GDLERALV 397 (400)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 66666654
No 175
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.83 E-value=8.1e-21 Score=211.18 Aligned_cols=317 Identities=11% Similarity=0.075 Sum_probs=198.0
Q ss_pred ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc-CC--CCCceeEEe--cCCchhhHHHHHhhh
Q psy16512 70 AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF-NT--DSDHYSVIF--TSGATSAIKTVSEYF 144 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~-g~--~~~~~~iv~--t~g~t~al~~~~~al 144 (815)
...+++.+.+++.+.+... ..+ .+..... ..++|+.+++++ +. ++++ |++ |+|+++|+.+++.++
T Consensus 42 ~~~~~~~v~~a~~~~~~~~---~~~-~y~~~~g----~~~lr~~la~~~~~~~~~~~~--v~~~~~~g~~~a~~~~~~~~ 111 (394)
T 2ay1_A 42 HTPIMRAVHAAEQRMLETE---TTK-TYAGLSG----EPEFQKAMGELILGDGLKSET--TATLATVGGTGALRQALELA 111 (394)
T ss_dssp CCCCCHHHHHHHHHHHHHC---CCC-CCCCSSC----CHHHHHHHHHHHHGGGCCGGG--EEEEEEEHHHHHHHHHHHHH
T ss_pred CccCcHHHHHHHHHhcCCc---ccC-CCCCCCC----cHHHHHHHHHHHhCCCCCccc--EEEEecCCchhHHHHHHHHH
Confidence 3455677777776654321 001 0111222 678999999987 55 5666 998 999999999999877
Q ss_pred c-cCCCc-EEEecCCCcchhhHHHHhhccc-eEEcC--chhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC
Q psy16512 145 E-FNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFS--VDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP 219 (815)
Q Consensus 145 ~-~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~--~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~ 219 (815)
. +.+|| |++....|+++.......+... .++.+ .+..++++.++++++ ...++++++++++++||||.++|
T Consensus 112 ~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~~~~~~~~~~~nptG~~~~ 187 (394)
T 2ay1_A 112 RMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLA----AAKKGDMVLLHGCCHNPTGANLT 187 (394)
T ss_dssp HHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHH----TCCTTCEEEEESSSCTTTCCCCC
T ss_pred HhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHH----hCCCCCEEEEeCCCCCCCCCCCC
Confidence 5 24888 8888888877655544443332 55554 234566777766443 11234788888999999999998
Q ss_pred hHHH---HHHhhccccccccccCCCCeEEEEecccccCCC-------CCC-CCCCCC-cEEEEccccccccCCc--ceEE
Q psy16512 220 LSWC---NTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-------MLD-LKQHQP-DFISISFYKMFGYPTG--LGAL 285 (815)
Q Consensus 220 l~~I---~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-------~~d-l~~~~~-D~vv~S~~K~~g~p~G--~G~l 285 (815)
.+++ .++|+ ++|+++|+|++++.... ++. +...+. .+++.|+||+|| ++| +|++
T Consensus 188 ~~~l~~i~~~~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~riG~~ 255 (394)
T 2ay1_A 188 LDQWAEIASILE-----------KTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFG-IYRERTGCL 255 (394)
T ss_dssp HHHHHHHHHHHH-----------HHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTT-CGGGCEEEE
T ss_pred HHHHHHHHHHHH-----------HCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCc-CcCCccceE
Confidence 7755 55555 89999999999875332 111 211233 467889999999 667 5999
Q ss_pred EE---ecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH------HhhhhhH-HHH
Q psy16512 286 IV---KQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM------EKKRKSF-TNA 355 (815)
Q Consensus 286 ~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l------~~~~~~~-~~~ 355 (815)
++ +++.++.+...+.. ..+...++++..+..++.++++.. ......+ +++
T Consensus 256 ~~~~~~~~~~~~l~~~~~~--------------------~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~ 315 (394)
T 2ay1_A 256 LALCADAATRELAQGAMAF--------------------LNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGM 315 (394)
T ss_dssp EEECSSHHHHHHHHHHHHH--------------------HHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHH--------------------HHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 98 45443322111100 001122334566666666666533 1111222 778
Q ss_pred HHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhh
Q psy16512 356 FELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSC 435 (815)
Q Consensus 356 ~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~ 435 (815)
+++++++.+.|+++... .++++..+.. +.++.+.++ ...+.+.+.++||.+++|
T Consensus 316 ~~~~~~l~~~L~~~~~~---~~~~~~~~~~-------g~~~~~~~~--------~~~~~~~l~~~gi~v~~~-------- 369 (394)
T 2ay1_A 316 LRLREQLAGELRDLSGS---DRFGFVAEHR-------GMFSRLGAT--------PEQVKRIKEEFGIYMVGD-------- 369 (394)
T ss_dssp HHHHHHHHHHHHHHHTS---STTTHHHHCC-------SSEEECCCC--------HHHHHHHHHHHCEECCTT--------
T ss_pred HHHHHHHHHHHHhcCCC---CCeeEEcCCc-------eEEEeeCCC--------HHHHHHHHHhCCEEecCC--------
Confidence 88888999988876100 0234333321 444443322 134777888999998631
Q ss_pred hhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 436 QRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 436 ~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
+|+|++ .++++++++++++|+++
T Consensus 370 -----------------------------------~Ris~~-~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 370 -----------------------------------SRINIA-GLNDNTIPILARAIIEV 392 (394)
T ss_dssp -----------------------------------CEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred -----------------------------------CeEEee-cCCHhhHHHHHHHHHHc
Confidence 699998 57899999999999875
No 176
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.83 E-value=7.1e-19 Score=197.58 Aligned_cols=326 Identities=12% Similarity=0.071 Sum_probs=210.4
Q ss_pred ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCC-CceeEEecCCchhhHHHHHh---hhccC
Q psy16512 72 VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDS-DHYSVIFTSGATSAIKTVSE---YFEFN 147 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~-~~~~iv~t~g~t~al~~~~~---al~~~ 147 (815)
..++.+.+++.+.+... .+....+..... ..++++.|+++++.+. + +|++|+|+++|+.+++. ++. +
T Consensus 57 ~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~----~~~l~~~la~~~~~~~~~--~v~~~~g~~~a~~~~~~~a~~~~-~ 127 (426)
T 1sff_A 57 HLHPKVVAAVEAQLKKL--SHTCFQVLAYEP----YLELCEIMNQKVPGDFAK--KTLLVTTGSEAVENAVKIARAAT-K 127 (426)
T ss_dssp BTCHHHHHHHHHHTTTC--SCCCTTTEECHH----HHHHHHHHHHHSSCSSCE--EEEEESSHHHHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHhC--CCccccccCCHH----HHHHHHHHHHhCCccccc--EEEEeCchHHHHHHHHHHHHHhh-C
Confidence 35678888887766432 121111222333 7889999999993232 4 49999999999999988 665 6
Q ss_pred CCcEEEecCCCcc-hhhHHHHhhcc------------c--eEEcCch-----hhhcchhhhhhhhhhhhhcCCCccEEEE
Q psy16512 148 EGSFIYLTDNHTS-VLGMRELVKTN------------Q--IYSFSVD-----DARNMLNEFKESQENVENMRHSNSLFVY 207 (815)
Q Consensus 148 ~gdvv~~~~~h~s-~~~~~~~~~~~------------g--~v~~~~~-----~~~~~~~~~~~l~~~~~~~~~~t~lv~i 207 (815)
+|++++....|+. ...+....+.. + .++++.+ ..++++.++++++. ....+++++|++
T Consensus 128 ~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~--~~~~~~~~~v~~ 205 (426)
T 1sff_A 128 RSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKN--DAAPEDIAAIVI 205 (426)
T ss_dssp CCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHH--TCCGGGEEEEEE
T ss_pred CCeEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHh--ccCCCceEEEEE
Confidence 7777777776654 44444443321 1 2444321 12466666654430 000135778887
Q ss_pred e-cccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC--C--CCCCCCCCcEEEEccccccc
Q psy16512 208 P-AESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN--M--LDLKQHQPDFISISFYKMFG 277 (815)
Q Consensus 208 ~-~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~--~--~dl~~~~~D~vv~S~~K~~g 277 (815)
+ .++| ||...+ +++|.++|+ ++|+++|+|++++ ++.. . ++.....+|++ |++|+|+
T Consensus 206 ~p~~~n-tG~~~~~~~~l~~l~~l~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~ 271 (426)
T 1sff_A 206 EPVQGE-GGFYASSPAFMQRLRALCD-----------EHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSIA 271 (426)
T ss_dssp CSBCTT-TTSCBCCHHHHHHHHHHHH-----------HHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEE--EECGGGG
T ss_pred ecccCC-CCcccCCHHHHHHHHHHHH-----------HcCCEEEEechhhccCcccchhhhhhcCCCCCEE--EEccccc
Confidence 5 4456 997777 888888888 8999999999987 2211 1 12222346765 7889999
Q ss_pred cCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHH
Q psy16512 278 YPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNA 355 (815)
Q Consensus 278 ~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~ 355 (815)
+ | +|++++++++++.+.+.. .....+.+..+..++.++++.+... ...+++
T Consensus 272 -~-GlriG~~~~~~~~~~~l~~~~------------------------~~~~~~~~~~~~~a~~aal~~~~~~-~~~~~~ 324 (426)
T 1sff_A 272 -G-GFPLAGVTGRAEVMDAVAPGG------------------------LGGTYAGNPIACVAALEVLKVFEQE-NLLQKA 324 (426)
T ss_dssp -T-SSCCEEEEEEHHHHTTSCTTS------------------------BCCSSSSCHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred -C-CCceEEEEEcHHHHhhhccCC------------------------cCcCCCCCHHHHHHHHHHHHHHHhc-CHHHHH
Confidence 6 7 699999988776553211 0112245777888888888887652 223888
Q ss_pred HHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC----CCccCHHHHHHhhhcCCcEeccCccCC
Q psy16512 356 FELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD----GTYYGYSEVQNLANLKKIQLRTGCHCN 431 (815)
Q Consensus 356 ~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~----~~~~~~~~v~~~l~~~gI~v~~g~~~~ 431 (815)
.++++++.+.|+++.. ..+.+.... ..++++++.+.... ....+..++.+.|.++||.+++|...
T Consensus 325 ~~~~~~l~~~l~~~~~--~~~~~~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~- 393 (426)
T 1sff_A 325 NDLGQKLKDGLLAIAE--KHPEIGDVR--------GLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPY- 393 (426)
T ss_dssp HHHHHHHHHHHHHHHH--TCTTEEEEE--------EETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTT-
T ss_pred HHHHHHHHHHHHHHHH--hCCCeEEEE--------EEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCC-
Confidence 8999999998877510 003333221 13788888885310 01122345777788889999876420
Q ss_pred chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 432 PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 432 ~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+++|+++++.++++++++++++|++++.
T Consensus 394 ------------------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 422 (426)
T 1sff_A 394 ------------------------------------YNVLRILVPLTIEDAQIRQGLEIISQCFD 422 (426)
T ss_dssp ------------------------------------SCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------CCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence 27899999989999999999999998764
No 177
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.82 E-value=9.1e-20 Score=204.62 Aligned_cols=337 Identities=12% Similarity=0.083 Sum_probs=203.7
Q ss_pred ccccchhhHHHHHHHHhhc-cccCCCChhhhh-hhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccC
Q psy16512 70 AGVYSQSQMNQTIEQLKEN-IFSHPHGNSVLS-DFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFN 147 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~~-~~~np~s~~~~~-~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~ 147 (815)
....++.+.+++.+.+... ..+++++.+... .......+.+++.+++++|++.. .++++|+++|+..++.++. +
T Consensus 41 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~v~~~~Gs~a~~~al~~~~-~ 116 (425)
T 3ecd_A 41 ENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHA---NVQPHSGAQANGAVMLALA-K 116 (425)
T ss_dssp CCCCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEE---ECCCSSHHHHHHHHHHHHC-C
T ss_pred cCCCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCc---eeecCchHHHHHHHHHHcc-C
Confidence 4455788888887665322 123333221111 11011133456889999998753 3568889999999999996 8
Q ss_pred CCc-EEEecCCCcchh-hHHHH-hhccc--eEE--cCch-hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC
Q psy16512 148 EGS-FIYLTDNHTSVL-GMREL-VKTNQ--IYS--FSVD-DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP 219 (815)
Q Consensus 148 ~gd-vv~~~~~h~s~~-~~~~~-~~~~g--~v~--~~~~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~ 219 (815)
+|| |++...+|++.. ..... ....+ .++ ++++ ..++++.++++++ .+++++|++++++| |...+
T Consensus 117 ~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~------~~~~~~v~~~~~~~--~~~~~ 188 (425)
T 3ecd_A 117 PGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQ------QHKPSLIIAGFSAY--PRKLD 188 (425)
T ss_dssp TTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHH------HHCCSEEEEECSCC--CSCCC
T ss_pred CCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHh------hcCCcEEEEccccC--CCcCC
Confidence 999 888888888732 22221 11111 223 3322 3567777766543 13689999998877 57889
Q ss_pred hHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCC--CCC-CCCcEEEEccccccccCCcceEEEEec-cccccc
Q psy16512 220 LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLD--LKQ-HQPDFISISFYKMFGYPTGLGALIVKQ-KSAHVL 295 (815)
Q Consensus 220 l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~d--l~~-~~~D~vv~S~~K~~g~p~G~G~l~~~~-~~~~~l 295 (815)
+++|.++|+ ++|+++|+|++|+.|..... ... ..+|+++.|+||+|++|. .|+++.++ .+.+.+
T Consensus 189 l~~i~~l~~-----------~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~-~g~~~~~~~~~~~~~ 256 (425)
T 3ecd_A 189 FARFRAIAD-----------SVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPR-GGFVLTNDEEIAKKI 256 (425)
T ss_dssp HHHHHHHHH-----------HHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCCCS-CEEEEESCHHHHHHH
T ss_pred HHHHHHHHH-----------HcCCEEEEECcChHhhhhcccccCchhcCcEEEecCCcccCCCC-cEEEEeCCHHHHHHH
Confidence 999999999 89999999999765532110 111 127899999999997675 59998885 344433
Q ss_pred CcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh-hhH-HHHHHHHHHHHHHHHhccccC
Q psy16512 296 NKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-KSF-TNAFELSQYTYFYFKQLSYSN 373 (815)
Q Consensus 296 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-~~~-~~~~~l~~~l~~~L~~l~~~~ 373 (815)
.+....+ ..++++...+.++..++......+ ..+ ++..++++++.+.|.+.
T Consensus 257 ~~~~~~~-----------------------~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---- 309 (425)
T 3ecd_A 257 NSAVFPG-----------------------LQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG---- 309 (425)
T ss_dssp HHHHC----------------------------CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HhhhCcc-----------------------ccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC----
Confidence 2221111 123555566666655554432211 223 88889999999999886
Q ss_pred CCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcC
Q psy16512 374 GQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQG 453 (815)
Q Consensus 374 ~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~ 453 (815)
+++++.+.. .++++.+.+.... .+...+.+.|.++||.++.+.... ....
T Consensus 310 ---g~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~~~~p~--~~~~---------------- 359 (425)
T 3ecd_A 310 ---GVDLVTGGT------DNHLLLVDLRPKG---LKGAQVEQALERAGITCNKNGIPF--DPEK---------------- 359 (425)
T ss_dssp ---TCEEGGGSC------SSSEEEEECGGGT---CCHHHHHHHHHHTTEECEECCCTT--CSSC----------------
T ss_pred ---CCeeccCCC------CceEEEEEeCCCC---CCHHHHHHHHHHcCCEecccccCC--CCCC----------------
Confidence 677775421 2567777765321 233468888899999998653211 0000
Q ss_pred CccCCcccccCCCCceEEEEeccCCCC----HHHHHHHHHHHHHHHhhc
Q psy16512 454 HICGDDKDIIDGKPTGSIRISYGHASN----WDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 454 ~~c~~~~~~~~~~~~g~iRvs~g~~~t----~edi~~lv~~L~~~~~~~ 498 (815)
....+.+|++++..++ ++++++++++|++++.+.
T Consensus 360 -----------~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 360 -----------PTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp -----------TTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 0113679999665554 999999999999988664
No 178
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.71 E-value=6e-22 Score=220.30 Aligned_cols=292 Identities=12% Similarity=0.134 Sum_probs=187.6
Q ss_pred HHHHHHHHhH----cC--CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch
Q psy16512 108 DQMRTKILQY----FN--TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD 179 (815)
Q Consensus 108 ~~~r~~la~~----~g--~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~ 179 (815)
.++++.++++ +| +++++ |++|+|+++|+.+++.++. ++|| |++....|+++.......+... .++.+.+
T Consensus 69 ~~l~~~la~~l~~~~g~~~~~~~--v~~~~g~~~a~~~~~~~~~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~ 145 (392)
T 3b1d_A 69 DELLQAVLDWEKSEHQYSFDKED--IVFVEGVVPAISIAIQAFT-KEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEE 145 (392)
Confidence 3455555554 45 45555 9999999999999999997 8898 8888888877655444332222 4444322
Q ss_pred h---hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccCh---HHHHHHhhccccccccccCCCCeEEEEeccccc
Q psy16512 180 D---ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPL---SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC 253 (815)
Q Consensus 180 ~---~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l---~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~ 253 (815)
+ ..+++.++++++ .+++++|++++++||||.++|. ++|.++|+ ++|+++|+|++++.
T Consensus 146 ~g~~~~d~~~l~~~l~------~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~-----------~~~~~li~De~~~~ 208 (392)
T 3b1d_A 146 NGLFQIDFEQLENDIV------ENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQ-----------KHHVILVSDEIHQD 208 (392)
Confidence 2 256666665432 1468899999999999999984 45555555 89999999999875
Q ss_pred CC----CCCCCCC-----CCCcEEEEccccccccCCc--ceEEEEecc-cccccCcccccCceEEEEecCCcccccccCc
Q psy16512 254 GS----NMLDLKQ-----HQPDFISISFYKMFGYPTG--LGALIVKQK-SAHVLNKTFYGGGTVKISMANENFHIKKDGL 321 (815)
Q Consensus 254 g~----~~~dl~~-----~~~D~vv~S~~K~~g~p~G--~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 321 (815)
.. ...++.. .+.++++.|++|+|| .+| +|+++++++ +++.+.....
T Consensus 209 ~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~~~--------------------- 266 (392)
T 3b1d_A 209 LTLFGHEHVSFNTVSPDFKDFALVLSSATKTFN-IAGTKNSYAIIENPTLCAQFKHQQL--------------------- 266 (392)
Confidence 32 1122211 345688899999998 446 799998754 6555432211
Q ss_pred cccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHh-ccccCCCCcEEEcCCCCCCCCCcccceEEEE
Q psy16512 322 FEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQ-LSYSNGQPLVELYHDTDYGESKYQGNIVNFN 399 (815)
Q Consensus 322 ~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~-l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~ 399 (815)
.+..++++.++..++.++++......... ++..++++++.+.|++ + |+++++.+.. +.++++.
T Consensus 267 --~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~------~~~~~~~~~~-------~~~~~i~ 331 (392)
T 3b1d_A 267 --VNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQEA------PRLKVMKPQG-------TYLIWLD 331 (392)
Confidence 11112445555555556665322221222 6677788888888876 5 5676665432 3333456
Q ss_pred EecC--CCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEecc
Q psy16512 400 LLHK--DGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYG 476 (815)
Q Consensus 400 ~~~~--~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g 476 (815)
++.. +.. ++.+.| .++||.+++|..+.+. ..+++|++++
T Consensus 332 ~~~~~~~~~-----~l~~~l~~~~gi~v~~g~~f~~~---------------------------------~~~~iRi~~~ 373 (392)
T 3b1d_A 332 FSDYGLTDD-----ALFTLLHDQAKVILNRGSDYGSE---------------------------------GELHARLNIA 373 (392)
Confidence 6531 222 366666 4889999987654310 1378999988
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q psy16512 477 HASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 477 ~~~t~edi~~lv~~L~~~~~ 496 (815)
. +++++++++++|.+++.
T Consensus 374 ~--~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 374 A--PKSLVEEICKRIVCCLP 391 (392)
Confidence 5 57899999999988653
No 179
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.82 E-value=1.4e-19 Score=203.22 Aligned_cols=328 Identities=12% Similarity=0.048 Sum_probs=201.4
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhc-cccCCCChhhhhhhhhhhHHHHHHHHHhHcCC------CCCceeEEecCCchh
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKEN-IFSHPHGNSVLSDFCVSEIDQMRTKILQYFNT------DSDHYSVIFTSGATS 135 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~-~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~------~~~~~~iv~t~g~t~ 135 (815)
.|+|..+.++.++.+.+++.+.+... ... +..... ..++|+.++++++. +++..+|++|+|+++
T Consensus 58 ~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~-----Y~~~~g----~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~ 128 (420)
T 4f4e_A 58 VYTNEDGKIPLLRAVRDAEKARVEAGLPRG-----YLPIDG----IAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTG 128 (420)
T ss_dssp SCCCTTSCCCCCHHHHHHHHHHHHTCCCCC-----CCCTTC----CHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred eeECCCCCccCcHHHHHHHHHHhccCCCCC-----CCCCCC----cHHHHHHHHHHhcCCCccccccCceEEEECCccHH
Confidence 45566566667788888887766541 111 111222 67888888888753 344113999999999
Q ss_pred hHHHHH--hhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEc--CchhhhcchhhhhhhhhhhhhcCCCccEEEEec
Q psy16512 136 AIKTVS--EYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSF--SVDDARNMLNEFKESQENVENMRHSNSLFVYPA 209 (815)
Q Consensus 136 al~~~~--~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~--~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~ 209 (815)
|+.+++ .++. ++|| |++..+.|+++....+.++... .++. +.+..++++.++++++ ...++++++++++
T Consensus 129 al~~~~~~~~~~-~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~~~~v~i~~ 203 (420)
T 4f4e_A 129 ALKIGADFLRTL-NPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALN----GYEPGTIVVLHAC 203 (420)
T ss_dssp HHHHHHHHHHHH-CTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHT----TCCTTCEEEEECS
T ss_pred HHHHHHHHHHHh-CCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHH----hCCCCCEEEEeCC
Confidence 999994 4555 8898 9999988877765555443333 5565 2245567777776543 1235789999999
Q ss_pred ccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCC-----C---C-CCCCCcEEEEccccccccCC
Q psy16512 210 ESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNML-----D---L-KQHQPDFISISFYKMFGYPT 280 (815)
Q Consensus 210 ~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~-----d---l-~~~~~D~vv~S~~K~~g~p~ 280 (815)
++||||..++.+++.++++ .|+++|+++|+|+++....... . + ...+.++++.|++|.|| ++
T Consensus 204 p~NPtG~~~~~~~l~~i~~--------~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~ 274 (420)
T 4f4e_A 204 CHNPTGVDLNDAQWAQVVE--------VVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFS-LY 274 (420)
T ss_dssp SCTTTCCCCCHHHHHHHHH--------HHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTT-CG
T ss_pred CCCCCCCCCCHHHHHHHHH--------HHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCc-Cc
Confidence 9999999999776554443 2338999999999975432110 0 0 12345688899999999 66
Q ss_pred c--ceEEEEe---cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH------Hhhh
Q psy16512 281 G--LGALIVK---QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM------EKKR 349 (815)
Q Consensus 281 G--~G~l~~~---~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l------~~~~ 349 (815)
| +|++++. ++.++.+...... ..+....+++.....++..++... ....
T Consensus 275 G~RiG~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 334 (420)
T 4f4e_A 275 GERVGALSIITDSKDEAARVLSQLKR--------------------VIRTNYSNPPTHGGAIVAAVLASPELRASWVQEL 334 (420)
T ss_dssp GGCEEEEEEECSSHHHHHHHHHHHHH--------------------HHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCcEEEEEEcCCHHHHHHHHHHHHH--------------------HHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8 8998752 2322221100000 001112234444444444444321 1111
Q ss_pred hhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCc
Q psy16512 350 KSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGC 428 (815)
Q Consensus 350 ~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~ 428 (815)
..+ ++++++++++.+.|+++.. .+++.+..+.. +.++++.+ +...+.+.+.++||.+.++
T Consensus 335 ~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~-------g~~~~~~~--------~~~~~~~~l~~~gI~v~~~- 395 (420)
T 4f4e_A 335 GEMRDRIRAMRNGLVERLKAAGI---ERDFSFINAQR-------GMFSYSGL--------TSAQVDRLREEFGIYAVST- 395 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC---SSCCTHHHHSC-------SSEEECCC--------CHHHHHHHHHHHCEECCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC---CCCceeECCCc-------cEEEEeCC--------CHHHHHHHHHhCCEEecCC-
Confidence 222 7888889999999987610 01344433321 33333222 2235778888999998642
Q ss_pred cCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 429 HCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 429 ~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
+ |+|++.. +++++++++++|++++
T Consensus 396 ----------------------------------------~--Ris~~~~-~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 396 ----------------------------------------G--RICVAAL-NTRNLDVVANAIAAVL 419 (420)
T ss_dssp ----------------------------------------S--EEEGGGC-CTTTHHHHHHHHHHHH
T ss_pred ----------------------------------------C--eEEEecC-CHHHHHHHHHHHHHHh
Confidence 2 9999754 5577999999999875
No 180
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.82 E-value=8.2e-20 Score=203.85 Aligned_cols=327 Identities=12% Similarity=0.070 Sum_probs=210.1
Q ss_pred hhhhhhhhccc------ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGAG------VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~~------~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+.. ..++.+.+++.+.+..... .+. ...... ..++++++++++|.+ + +++|+|++
T Consensus 38 g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~-~~~--~~~~~~----~~~l~~~la~~~~~~--~--v~~~~gg~ 106 (406)
T 4adb_A 38 GKEYIDFAGGIAVNALGHAHPELREALNEQASKFWH-TGN--GYTNEP----VLRLAKKLIDATFAD--R--VFFCNSGA 106 (406)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSC-CCT--TSCCHH----HHHHHHHHHHHSSCS--E--EEEESSHH
T ss_pred CCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccc-ccC--CcCCHH----HHHHHHHHHhhCCCC--e--EEEeCcHH
Confidence 34566665542 2367888888777654211 111 112233 788999999999865 3 99999999
Q ss_pred hhHHHHHhhhccC------CC-c-EEEecCCCcchh-hHHHHhhccc----eEEcCchhh----hcchhhhhhhhhhhhh
Q psy16512 135 SAIKTVSEYFEFN------EG-S-FIYLTDNHTSVL-GMRELVKTNQ----IYSFSVDDA----RNMLNEFKESQENVEN 197 (815)
Q Consensus 135 ~al~~~~~al~~~------~g-d-vv~~~~~h~s~~-~~~~~~~~~g----~v~~~~~~~----~~~~~~~~~l~~~~~~ 197 (815)
+|+.+++.++... +| + +|+....|+... .......... ..+...+.. .+++.+++ .
T Consensus 107 ~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~-------~ 179 (406)
T 4adb_A 107 EANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASA-------L 179 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHHHHHT-------T
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHHHHHH-------H
Confidence 9999999988521 45 5 777777665543 3333222111 111111110 24444444 3
Q ss_pred cCCCccEEEEecccCCCcccc--C---hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC--CC--CCCCCCCcE
Q psy16512 198 MRHSNSLFVYPAESNFSGTKY--P---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN--ML--DLKQHQPDF 267 (815)
Q Consensus 198 ~~~~t~lv~i~~~~n~tG~~~--~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~--~~--dl~~~~~D~ 267 (815)
+.+++++|+++ ++||+|.++ + +++|.++|+ ++|+++|+|++++ ++.. +. +.....+|+
T Consensus 180 l~~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~ 247 (406)
T 4adb_A 180 IDDSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCN-----------RHNALLIFDEVQTGVGRTGELYAYMHYGVTPDL 247 (406)
T ss_dssp CSTTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHH-----------HTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSE
T ss_pred hcCCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEeccccCCCccchhHHHHhcCCCCCE
Confidence 34679999999 899999776 4 666777777 8999999999986 2211 11 111234677
Q ss_pred EEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH
Q psy16512 268 ISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM 345 (815)
Q Consensus 268 vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l 345 (815)
+ |+||+++ + | +|++++++++++.+.+... ....+.+.....++.++++.+
T Consensus 248 ~--t~sK~~~-~-G~r~G~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~a~~~~l~~~ 299 (406)
T 4adb_A 248 L--TTAKALG-G-GFPVGALLATEECARVMTVGTH------------------------GTTYGGNPLASAVAGKVLELI 299 (406)
T ss_dssp E--EECGGGG-T-TSCCEEEEECHHHHHTCCTTSS------------------------CCSSTTCHHHHHHHHHHHHHH
T ss_pred E--Eechhhc-C-CCCeEEEEEcHHHHhhhccCCc------------------------CCCCCCCHHHHHHHHHHHHHH
Confidence 6 5699999 5 5 8999999888766643321 112255667777777777765
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEec
Q psy16512 346 EKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLR 425 (815)
Q Consensus 346 ~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~ 425 (815)
.. ....++.+++++++.+.|+++.... +.+.-. ...+.++.+.++.... .+..++.+.|.++||.++
T Consensus 300 ~~-~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~--------~~~g~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~ 366 (406)
T 4adb_A 300 NT-PEMLNGVKQRHDWFVERLNTINHRY--GLFSEV--------RGLGLLIGCVLNADYA--GQAKQISQEAAKAGVMVL 366 (406)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHHH--CCEEEE--------EEETTEEEEEECTTTT--TCHHHHHHHHHHTTEECE
T ss_pred Hh-cCHHHHHHHHHHHHHHHHHHHHHhC--CCceEE--------EEEEEEEEEEEeCCcH--HHHHHHHHHHHHCCcEEe
Confidence 43 2223888888999998887751000 111111 1236788888875321 123468888888899987
Q ss_pred cCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 426 TGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 426 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
++. .+++|++++...+++|+++++++|++++.+
T Consensus 367 ~~~---------------------------------------~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~ 399 (406)
T 4adb_A 367 IAG---------------------------------------GNVVRFAPALNVSEEEVTTGLDRFAAACEH 399 (406)
T ss_dssp ESS---------------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ecC---------------------------------------CCeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 642 278999999999999999999999998753
No 181
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.82 E-value=2.4e-20 Score=207.45 Aligned_cols=325 Identities=11% Similarity=0.037 Sum_probs=198.3
Q ss_pred hhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC------CCCCceeEEe--cCCchh
Q psy16512 64 YLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN------TDSDHYSVIF--TSGATS 135 (815)
Q Consensus 64 yLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g------~~~~~~~iv~--t~g~t~ 135 (815)
|++..+..++++.+.+++.+.+... ..+ .+..... ..++|+.++++++ +++++ |++ |+|+++
T Consensus 36 ~~~~~~~~~~~~~v~~a~~~~~~~~---~~~-~y~~~~g----~~~lr~~la~~~~~~~~~~~~~~~--v~~~~~~g~~~ 105 (396)
T 2q7w_A 36 YKDETGKTPVLTSVKKAEQYLLENE---TTK-NYLGIDG----IPEFGRCTQELLFGKGSALINDKR--ARTAQTPGGTG 105 (396)
T ss_dssp CCCTTSCCCCCHHHHHHHHHHHHHC---CCC-CCCCTTC----CHHHHHHHHHHHHCTTCHHHHTTC--EEEEEESHHHH
T ss_pred ccCCCCCccCcHHHHHHHHhhcCcc---ccc-CCCCCCC----CHHHHHHHHHHHhcCCCCcccccc--EEEEecccchh
Confidence 3344334456677888776654421 001 0111223 6789999999882 23555 888 999999
Q ss_pred hHHHHHhhhc-cCCCc-EEEecCCCcchhhHHHHhhccc-eEEcC--chhhhcchhhhhhhhhhhhhcCCCccEEEEecc
Q psy16512 136 AIKTVSEYFE-FNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFS--VDDARNMLNEFKESQENVENMRHSNSLFVYPAE 210 (815)
Q Consensus 136 al~~~~~al~-~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~--~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~ 210 (815)
|+.+++.++. +.+|| |++..+.|+++.......+... .++.+ .+..++++.++++++ ...+++++++++++
T Consensus 106 a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~~~~v~~~~p 181 (396)
T 2q7w_A 106 ALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLN----EAQAGDVVLFHGCC 181 (396)
T ss_dssp HHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHT----TCCTTCEEEEECSS
T ss_pred hHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHH----hCCCCCEEEEeCCC
Confidence 9999987764 26888 8888888877655444432222 45553 234556777666443 11234789999999
Q ss_pred cCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC-----CCCC---C-CCCcEEEEccccccccCCc
Q psy16512 211 SNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM-----LDLK---Q-HQPDFISISFYKMFGYPTG 281 (815)
Q Consensus 211 ~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~-----~dl~---~-~~~D~vv~S~~K~~g~p~G 281 (815)
+||||.++|.+++.++++ .|+++|+++|+|+++...... .++. . .+.++++.|+||.|| ++|
T Consensus 182 ~nptG~~~~~~~l~~l~~--------~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G 252 (396)
T 2q7w_A 182 HNPTGIDPTLEQWQTLAQ--------LSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFG-LYN 252 (396)
T ss_dssp CTTTCCCCCHHHHHHHHH--------HHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTT-CGG
T ss_pred CCCCCCCCCHHHHHHHHH--------HHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEecccccc-ccc
Confidence 999999998776444433 223899999999997643210 1111 1 134578899999999 668
Q ss_pred --ceEEEE---ecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH-------Hhhh
Q psy16512 282 --LGALIV---KQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM-------EKKR 349 (815)
Q Consensus 282 --~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l-------~~~~ 349 (815)
+|++++ +++.++.+...+.. ..+...++++..+..++.++++.. ....
T Consensus 253 ~riG~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~ 312 (396)
T 2q7w_A 253 ERVGACTLVAADSETVDRAFSQMKA--------------------AIRANYSNPPAHGASVVATILSNDALRAIWEQELT 312 (396)
T ss_dssp GCCEEEEEECSSHHHHHHHHHHHHH--------------------HHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred cccceEEEEcCCHHHHHHHHHHHHH--------------------HHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHH
Confidence 699997 44322222111000 001222345666666666666432 1111
Q ss_pred hhHHHHHHHHHHHHHHHHhccccCCCC-cEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCc
Q psy16512 350 KSFTNAFELSQYTYFYFKQLSYSNGQP-LVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGC 428 (815)
Q Consensus 350 ~~~~~~~~l~~~l~~~L~~l~~~~~~p-~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~ 428 (815)
...++++++++++.+.|+++.. + ++++..+.. +.++.+.+. ...+.+.+.++||.+++
T Consensus 313 ~~~~~~~~~~~~l~~~L~~~~~----~~~~~~~~~~~-------~~~~~~~~~--------~~~~~~~l~~~gv~v~~-- 371 (396)
T 2q7w_A 313 DMRQRIQRMRQLFVNTLQEKGA----NRDFSFIIKQN-------GMFSFSGLT--------KEQVLRLREEFGVYAVA-- 371 (396)
T ss_dssp HC-CHHHHHHHHHHHHHHHTTC----CSCCTHHHHCC-------SSEEECCCC--------HHHHHHHHHHHCEECCT--
T ss_pred HHHHHHHHHHHHHHHHHHhcCC----CCCcceecCCC-------ceEEEecCC--------HHHHHHHHHhcCeeecC--
Confidence 1227788889999999988610 0 244443321 333333221 13477778889999863
Q ss_pred cCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 429 HCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 429 ~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
.+|+|++.. +++++++++++|+++
T Consensus 372 -----------------------------------------~~Ris~~~~-~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 372 -----------------------------------------SGRVNVAGM-TPDNMAPLCEAIVAV 395 (396)
T ss_dssp -----------------------------------------TCEEEGGGC-CTTTHHHHHHHHHHH
T ss_pred -----------------------------------------CceEEEeec-CHHHHHHHHHHHHhc
Confidence 169999854 889999999999875
No 182
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.82 E-value=2.1e-19 Score=197.00 Aligned_cols=285 Identities=15% Similarity=0.088 Sum_probs=186.3
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc--EEE-ecCCCcchhhHHHHhhccc--eEEcCc-hh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS--FIY-LTDNHTSVLGMRELVKTNQ--IYSFSV-DD 180 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd--vv~-~~~~h~s~~~~~~~~~~~g--~v~~~~-~~ 180 (815)
..++++++++++|.+. .++++|+++|+.+++.++. .+|| +|+ +...|++.+.....+...| .++++. ++
T Consensus 49 ~~~l~~~la~~~~~~~----~i~~~~G~~a~~~al~~~~-~~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 123 (357)
T 3lws_A 49 IEPFEQKFADVLGMDD----AVFFPSGTMAQQVALRIWS-DETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGAADR 123 (357)
T ss_dssp HHHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHHH-HHHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSCTTS
T ss_pred HHHHHHHHHHHhCCCc----EEEecCcHHHHHHHHHHHh-hcCCCcEEEecccceeeeeccchhhhccCcEEEEecCCCC
Confidence 7899999999999843 3555778889999998887 6666 444 4556666554222222234 555543 23
Q ss_pred hhcchhhhhhhhhhhhhcCCCccEEEEecccCCC-ccccC---hHHHHHHhhccccccccccCCCCeEEEEeccccc---
Q psy16512 181 ARNMLNEFKESQENVENMRHSNSLFVYPAESNFS-GTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC--- 253 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t-G~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~--- 253 (815)
.++++++++ . .++++|++++++||| |.++| +++|.++|+ ++|+++|+|+++..
T Consensus 124 ~~d~~~l~~-------~--~~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~-----------~~~~~li~D~a~~~~~~ 183 (357)
T 3lws_A 124 LMTLDEIKA-------L--PDIACLLLELPQREIGGVAPAFSELETISRYCR-----------ERGIRLHLDGARLFEML 183 (357)
T ss_dssp CCCHHHHHT-------C--CSCSEEEEESSBGGGTSBCCCHHHHHHHHHHHH-----------HTTCEEEEEETTHHHHH
T ss_pred CcCHHHHhc-------C--cCcceEEEEcccccCCceeCCHHHHHHHHHHHH-----------HcCCEEEEECchhhhhh
Confidence 456666554 1 238999999999998 99998 555666666 89999999998751
Q ss_pred ---CCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCC-
Q psy16512 254 ---GSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT- 329 (815)
Q Consensus 254 ---g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt- 329 (815)
+....++. ...|+++.|+||+|++|.| |+++.++++++.+..... ...++
T Consensus 184 ~~~~~~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~~~~~~~~~~~~~~------------------------~~~~~~ 237 (357)
T 3lws_A 184 PYYEKTAAEIA-GLFDSIYISFYKGLGGIAG-AILAGPAAFCQTARIWKR------------------------RYGGDL 237 (357)
T ss_dssp HHHTCCHHHHH-TTSSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHH------------------------HTTCCC
T ss_pred hhcCCChHHHH-hcCCEEEEeccccCCCCce-EEEEcCHHHHHHHHHHHH------------------------HhcCCc
Confidence 21111111 2468899999999966888 999988877765532110 00111
Q ss_pred --CChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEc-CCCCCCCCCcccceEEEEEecCCCC
Q psy16512 330 --VNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELY-HDTDYGESKYQGNIVNFNLLHKDGT 406 (815)
Q Consensus 330 --~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~-~~~~~~~~~~~~~i~~f~~~~~~~~ 406 (815)
.+.....++ .+++. ....+++..+.++++.+.|+++ |++++. .+. .++++++.++....
T Consensus 238 ~~~~~~~~~~~-~~l~~---~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~-------~~~~~~~~~~~~~~- 299 (357)
T 3lws_A 238 ISLYPYIVSAD-YYYEL---RKDRMGQYYEQAKQLAEQFNAL------PGVHTTPEVP-------VSNMFHLHFDGQAA- 299 (357)
T ss_dssp SCCHHHHHHHH-HHHHH---HTTCHHHHHHHHHHHHHHHHTS------TTEEEESSSC-------SSSEEEEEEESCHH-
T ss_pred ccchHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHhC------CCCeeccCCC-------cceEEEEEecCChH-
Confidence 122222222 33332 2223355677888999999988 789884 333 26788888875310
Q ss_pred ccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC---CCHHH
Q psy16512 407 YYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA---SNWDD 483 (815)
Q Consensus 407 ~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~---~t~ed 483 (815)
.+..++.+.|.++||.+++|..+.+ ..+++|++++.. .+.++
T Consensus 300 -~~~~~~~~~l~~~Gi~v~~g~~~~~----------------------------------~~~~~r~~i~~~~~~~~~~~ 344 (357)
T 3lws_A 300 -DISPKLEQVQEETGLGFVGYLVDKD----------------------------------GYCSTEISVGDAYGELDQQT 344 (357)
T ss_dssp -HHHHHHHHHHHHHCEESCSCCEECS----------------------------------SEEEEEEEBCTTGGGSCHHH
T ss_pred -HHHHHHHHHHHhcCeEEecccccCC----------------------------------CceEEEEEecchhhhcCHHH
Confidence 1123577888999999998743221 126899999854 47888
Q ss_pred HHHHHHHHHHHH
Q psy16512 484 VKYFLSFLNQYF 495 (815)
Q Consensus 484 i~~lv~~L~~~~ 495 (815)
++..++.|.+.+
T Consensus 345 l~~al~~l~~al 356 (357)
T 3lws_A 345 RDAGFARLRQAF 356 (357)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 888888887653
No 183
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.82 E-value=1.2e-19 Score=202.89 Aligned_cols=323 Identities=15% Similarity=0.062 Sum_probs=202.8
Q ss_pred hhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc-CC-----CCCceeEEe--cCCchhhH
Q psy16512 66 DYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF-NT-----DSDHYSVIF--TSGATSAI 137 (815)
Q Consensus 66 d~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~-g~-----~~~~~~iv~--t~g~t~al 137 (815)
+..+...+++.+.+++.+.+... ...+ .+..... ..++|+.+++++ +. ++++ |++ |+|+++|+
T Consensus 42 ~~~~~~~~~~~v~~a~~~~~~~~--~~~~-~y~~~~g----~~~lr~~la~~~~~~~~~~~~~~~--v~~~~t~gg~~a~ 112 (412)
T 1ajs_A 42 TDDCQPWVLPVVRKVEQRIANNS--SLNH-EYLPILG----LAEFRTCASRLALGDDSPALQEKR--VGGVQSLGGTGAL 112 (412)
T ss_dssp CTTSCCCCCHHHHHHHHHHHTCT--TCCC-CCCCTTC----CHHHHHHHHHHHHCTTCHHHHTTC--EEEEEEEHHHHHH
T ss_pred CCCCCccccHHHHHHHHHhhhCh--hhcc-CCCCCCC----CHHHHHHHHHHHhcCCCCccCCCc--EEEEECCCcHHHH
Confidence 33333455677777776654211 0101 0111222 678999999998 53 5566 999 99999999
Q ss_pred HHHHh--hhccCCC-----c-EEEecCCCcchhhHHHHhhcc-c-eEEcC--chhhhcchhhhhhhhhhhhhcCCCccEE
Q psy16512 138 KTVSE--YFEFNEG-----S-FIYLTDNHTSVLGMRELVKTN-Q-IYSFS--VDDARNMLNEFKESQENVENMRHSNSLF 205 (815)
Q Consensus 138 ~~~~~--al~~~~g-----d-vv~~~~~h~s~~~~~~~~~~~-g-~v~~~--~~~~~~~~~~~~~l~~~~~~~~~~t~lv 205 (815)
.+++. ++. .+| | |++....|+++.......+.. . .++.+ .+..++++.++++++ ...++++++
T Consensus 113 ~~~~~~~~~~-~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~~~~v 187 (412)
T 1ajs_A 113 RIGAEFLARW-YNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLE----NAPEFSIFV 187 (412)
T ss_dssp HHHHHHHHHH-SSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHH----HSCTTCEEE
T ss_pred HHHHHHHHHh-CcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHH----hCCCCcEEE
Confidence 99964 333 688 8 999998988877666665555 4 45553 233556777666443 112467899
Q ss_pred EEecccCCCccccChHH---HHHHhhccccccccccCCCCeEEEEecccccC-CC-----CCCCC----CCCCcEEEEcc
Q psy16512 206 VYPAESNFSGTKYPLSW---CNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG-SN-----MLDLK----QHQPDFISISF 272 (815)
Q Consensus 206 ~i~~~~n~tG~~~~l~~---I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g-~~-----~~dl~----~~~~D~vv~S~ 272 (815)
++++++||||.++|.++ |.++|+ ++|+++|+|+++... .. ...+. ..+.++++.|+
T Consensus 188 ~~~~p~nptG~~~~~~~l~~l~~~~~-----------~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 256 (412)
T 1ajs_A 188 LHACAHNPTGTDPTPEQWKQIASVMK-----------RRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSF 256 (412)
T ss_dssp EESSSCTTTCCCCCHHHHHHHHHHHH-----------HHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEEC
T ss_pred EECCCCCCCCCCCCHHHHHHHHHHHH-----------HCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEec
Confidence 99999999999998775 555555 899999999996432 21 11111 11234888999
Q ss_pred ccccccCCc--ceEEEE---ecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHH-
Q psy16512 273 YKMFGYPTG--LGALIV---KQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME- 346 (815)
Q Consensus 273 ~K~~g~p~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~- 346 (815)
||.|| ++| +|++++ +++.++.+...+.. ..+...++++..+..++.++++...
T Consensus 257 sK~~~-~~G~riG~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~a~~~~l~~~~~ 315 (412)
T 1ajs_A 257 SKNFG-LYNERVGNLTVVAKEPDSILRVLSQMQK--------------------IVRVTWSNPPAQGARIVARTLSDPEL 315 (412)
T ss_dssp TTTSC-CGGGCEEEEEEECSSHHHHHHHHHHHHH--------------------HHHTTTSSCCSHHHHHHHHHHHSHHH
T ss_pred ccccC-CCCcceEEEEEecCCHHHHHHHHHHHHH--------------------HHhcccCCCChHHHHHHHHHHcCcch
Confidence 99999 778 799999 66533222110000 0112223456677777777776432
Q ss_pred -----hhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC
Q psy16512 347 -----KKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK 420 (815)
Q Consensus 347 -----~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~ 420 (815)
..... .++++++++++.+.|+++..+ .+++++.+.. +.++...+ + ...+.+.+.++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~---~~~~~~~~~~-------~~~~~~~~---~-----~~~~~~~l~~~ 377 (412)
T 1ajs_A 316 FHEWTGNVKTMADRILSMRSELRARLEALKTP---GTWNHITDQI-------GMFSFTGL---N-----PKQVEYLINQK 377 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS---SCCHHHHHCC-------SSEEECCC---C-----HHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---CCeeEEcCCC-------ceEEEeCC---C-----HHHHHHHHHhC
Confidence 11122 278888999999999886100 0244443321 33332222 1 23466777889
Q ss_pred CcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 421 KIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 421 gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
||.+++ .+|+|++. .+++++++++++|++++.
T Consensus 378 gv~v~~-------------------------------------------~~Ris~~~-~~~~~i~~~~~~l~~~l~ 409 (412)
T 1ajs_A 378 HIYLLP-------------------------------------------SGRINMCG-LTTKNLDYVATSIHEAVT 409 (412)
T ss_dssp CEECCT-------------------------------------------TSEEEGGG-CCTTTHHHHHHHHHHHHH
T ss_pred CEEecC-------------------------------------------CcEEEeee-CCHHHHHHHHHHHHHHHH
Confidence 999863 15999984 488999999999998774
No 184
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.81 E-value=6.4e-20 Score=208.83 Aligned_cols=347 Identities=13% Similarity=0.107 Sum_probs=204.5
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHH
Q psy16512 61 DICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTV 140 (815)
Q Consensus 61 ~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~ 140 (815)
+..|+|..+.... +.+.+++.+.+..... .+..... ..+++++++++++.+ + ++||+|+|+|+.++
T Consensus 42 g~~ylD~~~~~~~-~~v~~a~~~~~~~~~~-----~y~~~~~----~~~l~~~la~~~~~~--~--v~~t~ggt~A~~~a 107 (467)
T 1ax4_A 42 SAVYIDLLTDSGT-NAMSDHQWAAMITGDE-----AYAGSRN----YYDLKDKAKELFNYD--Y--IIPAHQGRGAENIL 107 (467)
T ss_dssp GGCSEECSCSSSC-CCEEHHHHHHHHTCCC-----CSSSCHH----HHHHHHHHHHHHCCC--E--EEEESSHHHHHHHH
T ss_pred CceeeecccCcCC-HHHHHHHHHHHhhccc-----ccccCcc----HHHHHHHHHHHcCCC--c--EEEcCCcHHHHHHH
Confidence 4578888655544 6666666655432110 1111123 678999999999873 3 99999999999999
Q ss_pred HhhhccC----CCc----EEEecCCC-cchhhHHHHhhccceEEcCc------------hhhhcchhhhhhhhhhhhhcC
Q psy16512 141 SEYFEFN----EGS----FIYLTDNH-TSVLGMRELVKTNQIYSFSV------------DDARNMLNEFKESQENVENMR 199 (815)
Q Consensus 141 ~~al~~~----~gd----vv~~~~~h-~s~~~~~~~~~~~g~v~~~~------------~~~~~~~~~~~~l~~~~~~~~ 199 (815)
+.++. . +|| +|++ ..| +++.......+.. .+.+.. ++.++++.++++++. ...
T Consensus 108 l~~~~-~~~~~~Gd~~~~viv~-~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~---~~~ 181 (467)
T 1ax4_A 108 FPVLL-KYKQKEGKAKNPVFIS-NFHFDTTAAHVELNGCK-AINIVTEKAFDSETYDDWKGDFDIKKLKENIAQ---HGA 181 (467)
T ss_dssp HHHHH-HHHHHTTCCSSCEEEE-SSCCHHHHHHHHHTTCE-EEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHH---HCG
T ss_pred HHHHH-HhhccCCCccceEEEe-ccccchhhHHHhccCCc-eecccccccccccccCCcccccCHHHHHHHHHh---cCC
Confidence 99987 6 887 5665 555 3333333332211 222211 223566776665531 101
Q ss_pred CCccEEEEecccCCC-ccccChH---HHHHHhhccccccccccCCCCeEEEEeccccc-----------CCCCCCCCC--
Q psy16512 200 HSNSLFVYPAESNFS-GTKYPLS---WCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC-----------GSNMLDLKQ-- 262 (815)
Q Consensus 200 ~~t~lv~i~~~~n~t-G~~~~l~---~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~-----------g~~~~dl~~-- 262 (815)
+++++|++++++||+ |.++|.+ +|.++|+ +||+++|+|+++.. +....++..
T Consensus 182 ~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~-----------~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (467)
T 1ax4_A 182 DNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAK-----------QHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVI 250 (467)
T ss_dssp GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHH-----------HHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHH
T ss_pred CCeeEEEEeccccCCCccCCChhHHHHHHHHHH-----------HcCCEEEEEchhhhhcchhccccccccCCCchhhhh
Confidence 368999999999999 8888765 5666666 89999999998665 333332211
Q ss_pred ----CCCcEEEEccccccccCCcceEEEEe-c-ccccccCccccc-CceEEEEecCCcccccccCccccccCCCCChhHH
Q psy16512 263 ----HQPDFISISFYKMFGYPTGLGALIVK-Q-KSAHVLNKTFYG-GGTVKISMANENFHIKKDGLFEKFEDGTVNYLAI 335 (815)
Q Consensus 263 ----~~~D~vv~S~~K~~g~p~G~G~l~~~-~-~~~~~l~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 335 (815)
..+|++++|+||++|.|.| |+++.+ + ++++.+...... ++ ....++.+...+
T Consensus 251 ~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~d~~~l~~~~~~~~~~~~~--------------------~~~~~~~~~~~~ 309 (467)
T 1ax4_A 251 FDMYKYADALTMSAKKDPLLNIG-GLVAIRDNEEIFTLARQRCVPMEG--------------------FVTYGGLAGRDM 309 (467)
T ss_dssp HHHGGGCSEEEEETTSTTCCSSC-EEEEESSCHHHHHHHHHHHHHHTC--------------------STTTTTCCHHHH
T ss_pred hhhccccceEEEeccccCCCCcc-eEEEeCCHHHHHHHHHhhcccccc--------------------ccccCCccchHH
Confidence 1368899999999995534 666666 5 565544321100 00 012234454445
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEec----CCCCccCHH
Q psy16512 336 ISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLH----KDGTYYGYS 411 (815)
Q Consensus 336 ~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~----~~~~~~~~~ 411 (815)
.++..+++.... ...+++..++++++.+.|.+. ++.+..+.. +.++++.+.. .....++..
T Consensus 310 ~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~L~~~-------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 374 (467)
T 1ax4_A 310 AAMVQGLEEGTE-EEYLHYRIGQVKYLGDRLREA-------GIPIQYPTG-------GHAVFVDCKKLVPQIPGDQFPAQ 374 (467)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHT-------TCCBCSSCC-------SSEEEEESTTTCTTSCGGGCHHH
T ss_pred HHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHhC-------CCCcccCCC-------ceEEEEehhhhccccccCCCCHH
Confidence 544445543211 012244456778888888763 455544432 5666666211 111112234
Q ss_pred HHHHhh-hcCCcEecc-CccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC-CCHHHHHHHH
Q psy16512 412 EVQNLA-NLKKIQLRT-GCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA-SNWDDVKYFL 488 (815)
Q Consensus 412 ~v~~~l-~~~gI~v~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~-~t~edi~~lv 488 (815)
++.+.| .++||.+++ |.++... ... .|. . .....+++|+|++.+ +|++|+++++
T Consensus 375 ~l~~~L~~~~gv~v~~~g~~~~~~-~~~-~g~-----------------~----~~~~~~~iRls~~~~~~t~e~i~~~~ 431 (467)
T 1ax4_A 375 AVINALYLESGVRAVEIGSFLLGR-DPA-TGE-----------------Q----KHADMEFMRLTIARRVYTNDHMDYIA 431 (467)
T ss_dssp HHHHHHHHHHCEECEEESHHHHCB-CTT-TCS-----------------B----CCCSCCEEEEECCTTSSCHHHHHHHH
T ss_pred HHHHHHHHhcCceeeecCcccccc-ccc-ccc-----------------c----cccccceEEEecccccCCHHHHHHHH
Confidence 577777 899999987 5431000 000 000 0 001137999999954 8999999999
Q ss_pred HHHHHHHhh
Q psy16512 489 SFLNQYFLQ 497 (815)
Q Consensus 489 ~~L~~~~~~ 497 (815)
++|++++..
T Consensus 432 ~~l~~~~~~ 440 (467)
T 1ax4_A 432 DALIGLKEK 440 (467)
T ss_dssp HHHHTTHHH
T ss_pred HHHHHHHHh
Confidence 999987755
No 185
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.81 E-value=5.2e-19 Score=200.68 Aligned_cols=311 Identities=10% Similarity=0.022 Sum_probs=190.5
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCcEEEecCCC-cchhhHHHHhhccc-eEEcCch-----
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTDNH-TSVLGMRELVKTNQ-IYSFSVD----- 179 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gdvv~~~~~h-~s~~~~~~~~~~~g-~v~~~~~----- 179 (815)
..+++++++++++.+ + +++|+|+++|+.+++.++. ++|| +++...| +++.......+... .++++.+
T Consensus 77 ~~~l~~~la~~~~~~--~--~~~~~~gt~a~~~al~~l~-~~gd-i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~ 150 (456)
T 2ez2_A 77 FYHLERTVQELFGFK--H--IVPTHQGRGAENLLSQLAI-KPGQ-YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGL 150 (456)
T ss_dssp HHHHHHHHHHHHCCS--E--EEEESSHHHHHHHHHHHHC-CTTC-EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTC
T ss_pred HHHHHHHHHHHhCCC--c--EEEeCCcHHHHHHHHHHhC-CCCC-EeccccccchhHHHHHHcCCEEEEecccccccccc
Confidence 778999999999975 3 9999999999999999996 8999 8888888 66554444332222 3344421
Q ss_pred -----hhhcchhhhhhhhhhhhhcCCCccEEEEecccC-CCccccC---hHHHHHHhhccccccccccCCCCeEEEEecc
Q psy16512 180 -----DARNMLNEFKESQENVENMRHSNSLFVYPAESN-FSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAA 250 (815)
Q Consensus 180 -----~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n-~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a 250 (815)
..++++.++++++ +...+++++|++++++| |||.++| +++|.++|+ ++|+++|+|++
T Consensus 151 ~~~~~~~~d~~~l~~~i~---~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~-----------~~~i~li~De~ 216 (456)
T 2ez2_A 151 NIAFKGDIDLKKLQKLID---EKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTE-----------AHGIKVFYDAT 216 (456)
T ss_dssp CCSCTTCBCHHHHHHHHH---HHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHH-----------HTTCCEEEECT
T ss_pred cccccCCCCHHHHHHHHH---hccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHH-----------HcCCeEEEEcc
Confidence 2456677666553 11012248999999998 9999998 777788887 89999999999
Q ss_pred cccC---------CCCCCCC--------CCCCcEEEEccccccccCCcceEEEE-ecccccccCccccc-CceEEEEecC
Q psy16512 251 TYCG---------SNMLDLK--------QHQPDFISISFYKMFGYPTGLGALIV-KQKSAHVLNKTFYG-GGTVKISMAN 311 (815)
Q Consensus 251 ~~~g---------~~~~dl~--------~~~~D~vv~S~~K~~g~p~G~G~l~~-~~~~~~~l~~~~~g-~~~~~~~~~~ 311 (815)
++.| ....... ...+|++++|+||+++ ++..|+++. ++++++.+...... .+.
T Consensus 217 ~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~-~~~gG~~~~~~~~~~~~~~~~~~~~~~~------- 288 (456)
T 2ez2_A 217 RCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCL-VNIGGFLCMNDDEMFSSAKELVVVYEGM------- 288 (456)
T ss_dssp THHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC-CSSCEEEEESCHHHHHHHHHHHHHHTCC-------
T ss_pred ccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCC-CCceeEEEECCHHHHHHHHHHHhhccCc-------
Confidence 8864 2111111 1236898889999877 423688888 45665544322100 000
Q ss_pred CcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCC
Q psy16512 312 ENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-KSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESK 390 (815)
Q Consensus 312 ~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~ 390 (815)
...+..+...+.++ ++..+..+. ...++..++.+++.+.|++. ++.+..+..
T Consensus 289 -------------~~~~~~~~~~~~a~--a~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~p~~----- 341 (456)
T 2ez2_A 289 -------------PSYGGLAGRDMEAM--AIGLREAMQYEYIEHRVKQVRYLGDKLKAA-------GVPIVEPVG----- 341 (456)
T ss_dssp -------------TTTTTCCHHHHHHH--HHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-------TCCBCSSCC-----
T ss_pred -------------ccccCcchhHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHhcC-------CCccccCCC-----
Confidence 00112233333331 222233332 22266777888888888875 455554432
Q ss_pred cccceEEEEEe----cCCCCccCHHHHHHhh-hcCCcEecc-CccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccC
Q psy16512 391 YQGNIVNFNLL----HKDGTYYGYSEVQNLA-NLKKIQLRT-GCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIID 464 (815)
Q Consensus 391 ~~~~i~~f~~~----~~~~~~~~~~~v~~~l-~~~gI~v~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~ 464 (815)
+.++.+.+. +.+...+....+.+.| .++||.+.. |.+|.+. ....|. . .
T Consensus 342 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~--~~~~g~-----------------~----~ 396 (456)
T 2ez2_A 342 --GHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGR--NNVTGE-----------------H----H 396 (456)
T ss_dssp --SSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCB--CTTTCS-----------------B----C
T ss_pred --ceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeeccccccccc--Cccccc-----------------c----c
Confidence 567777653 2222221111224555 788998643 5433110 000010 0 0
Q ss_pred CCCceEEEEeccCC-CCHHHHHHHHHHHHHHHhh
Q psy16512 465 GKPTGSIRISYGHA-SNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 465 ~~~~g~iRvs~g~~-~t~edi~~lv~~L~~~~~~ 497 (815)
....+++|+|++.. ++++|+++++++|++++.+
T Consensus 397 ~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~ 430 (456)
T 2ez2_A 397 RPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQH 430 (456)
T ss_dssp CCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred cCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 01136899999987 8999999999999998755
No 186
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.81 E-value=6.4e-19 Score=195.98 Aligned_cols=324 Identities=13% Similarity=0.113 Sum_probs=209.6
Q ss_pred hhhhhhhhccc------ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGAG------VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~~------~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+.. ..++.+.+++.+.+....+... ...... .+++++++++++| .++ ++||+|++
T Consensus 35 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~---~~~~~~----~~~l~~~la~~~~--~~~--v~~~~gg~ 103 (395)
T 3nx3_A 35 AKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSN---LYYNEN----IAAAAKNLAKASA--LER--VFFTNSGT 103 (395)
T ss_dssp CCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCT---TSBCHH----HHHHHHHHHHHHT--CSE--EEEESSHH
T ss_pred CCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhcccccc---ccCCHH----HHHHHHHHHHhcC--CCe--EEEeCCHH
Confidence 34577765542 2368888888877654322111 112233 7889999999998 344 99999999
Q ss_pred hhHHHHHhhhcc------CCCc-EEEecCCCcchhhHHHHhhcc----------c--eEEcCchhhhcchhhhhhhhhhh
Q psy16512 135 SAIKTVSEYFEF------NEGS-FIYLTDNHTSVLGMRELVKTN----------Q--IYSFSVDDARNMLNEFKESQENV 195 (815)
Q Consensus 135 ~al~~~~~al~~------~~gd-vv~~~~~h~s~~~~~~~~~~~----------g--~v~~~~~~~~~~~~~~~~l~~~~ 195 (815)
+|+..++.++.. .+++ +|+....|+........+... + ...+.. .+++.+++
T Consensus 104 ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~l~~------ 174 (395)
T 3nx3_A 104 ESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY---NDISSVEK------ 174 (395)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT---TCHHHHHT------
T ss_pred HHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC---CCHHHHHH------
Confidence 999999887641 1345 777776655433211111110 0 111111 13444444
Q ss_pred hhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC--C--CCCCCCCc
Q psy16512 196 ENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM--L--DLKQHQPD 266 (815)
Q Consensus 196 ~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~--~--dl~~~~~D 266 (815)
.+++++++|++..++|++|.+.+ +++|.++|+ ++|+++|+|+++. +|... . +.....+|
T Consensus 175 -~l~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~-----------~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d 242 (395)
T 3nx3_A 175 -LVNEKTCAIILESVQGEGGINPANKDFYKALRKLCD-----------EKDILLIADEIQCGMGRSGKFFAYEHAQILPD 242 (395)
T ss_dssp -TCCTTEEEEEEESEECTTSCEECCHHHHHHHHHHHH-----------HHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred -hccCCeEEEEEeCccCCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEEecccCCCcCCcchhHHhcCCCCC
Confidence 33467899999999999999988 888899998 8999999999976 33211 1 11123467
Q ss_pred EEEEccccccccCCcceEEEEeccc-ccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH
Q psy16512 267 FISISFYKMFGYPTGLGALIVKQKS-AHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM 345 (815)
Q Consensus 267 ~vv~S~~K~~g~p~G~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l 345 (815)
++ |++|.++++.++|++++++++ .+.+.+...+. ..+.|.++..++.++++.+
T Consensus 243 ~~--t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~aa~aal~~~ 296 (395)
T 3nx3_A 243 IM--TSAKALGCGLSVGAFVINQKVASNSLEAGDHGS------------------------TYGGNPLVCAGVNAVFEIF 296 (395)
T ss_dssp EE--EECGGGTTTSCCEEEEECHHHHHHHSCTTCCSS------------------------CBSCCHHHHHHHHHHHHHH
T ss_pred EE--EecccccCCCceEEEEEchhhhhhhcCCcccCC------------------------CCCCCHHHHHHHHHHHHHH
Confidence 65 567988843358999999888 66664432111 1245667777777788766
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEec
Q psy16512 346 EKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLR 425 (815)
Q Consensus 346 ~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~ 425 (815)
... ...++.+++.+++.+.|.++.. ..|.+.... ..++++.+.+.+.. ....+.+.|.++||.++
T Consensus 297 ~~~-~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~--------~~g~~~~~~~~~~~----~~~~~~~~l~~~Gi~v~ 361 (395)
T 3nx3_A 297 KEE-KILENVNKLTPYLEQSLDELIN--EFDFCKKRK--------GLGFMQGLSLDKSV----KVAKVIQKCQENALLLI 361 (395)
T ss_dssp HHT-THHHHHHHHHHHHHHHHHHHHH--HCTTEEEEE--------EETTEEEEEECTTS----CHHHHHHHHHHTTEECE
T ss_pred Hhh-HHHHHHHHHHHHHHHHHHHHHH--hCCCeEEEE--------eEEEEEEEEeCCcc----hHHHHHHHHHHCCCEEe
Confidence 432 2236677777777777665410 003343332 23688888886531 23457888889999987
Q ss_pred cCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 426 TGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 426 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
++. .+++|+++++..|++|+++++++|++++.
T Consensus 362 ~~~---------------------------------------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 393 (395)
T 3nx3_A 362 SCG---------------------------------------ENDLRFLPPLILQKEHIDEMSEKLRKALK 393 (395)
T ss_dssp EET---------------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCC---------------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 641 27899999999999999999999999774
No 187
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.81 E-value=6.8e-20 Score=205.10 Aligned_cols=324 Identities=14% Similarity=0.066 Sum_probs=201.3
Q ss_pred hhhhhhcccccchhhHHHHHH-HHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCC------CCCceeEEe--cCCc
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIE-QLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNT------DSDHYSVIF--TSGA 133 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~-~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~------~~~~~~iv~--t~g~ 133 (815)
.|+|..+...+++.+.+++.+ .+... ..+ .+..... ..++|+.++++++. ++++ |++ |+|+
T Consensus 38 ~~~d~~~~~~~~~~v~~a~~~~~~~~~---~~~-~y~~~~g----~~~lr~~ia~~~~~~~~~~~~~~~--i~~~~t~g~ 107 (412)
T 1yaa_A 38 AYRDDNGKPWVLPSVKAAEKLIHNDSS---YNH-EYLGITG----LPSLTSNAAKIIFGTQSDALQEDR--VISVQSLSG 107 (412)
T ss_dssp CCBCTTSCBCCCHHHHHHHHHHHTCTT---CCC-CCCCTTC----CHHHHHHHHHHHHCTTCHHHHTTC--EEEEEEEHH
T ss_pred eeeCCCCCCCCcHHHHHHHHhhhcCcc---ccc-CCCCCCC----cHHHHHHHHHHHhcCCCCCCCcce--EEEEeccch
Confidence 456666666777888888776 54311 001 0111223 67899999998832 4565 999 9999
Q ss_pred hhhHHHHH--hhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEc-Cc-hhhhcchhhhhhhhhhhhhcCCCccEEEE
Q psy16512 134 TSAIKTVS--EYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSF-SV-DDARNMLNEFKESQENVENMRHSNSLFVY 207 (815)
Q Consensus 134 t~al~~~~--~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~-~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i 207 (815)
++|+.+++ .... .+|| |++..+.|+++....+..+... .++. ++ +..++++.++++++ ...+.+.++++
T Consensus 108 ~~a~~~~~~~~~~~-~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~~~~~~~ 182 (412)
T 1yaa_A 108 TGALHISAKFFSKF-FPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQ----KAPEGSIFVLH 182 (412)
T ss_dssp HHHHHHHHHHHHHH-CTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHH----HSCTTCEEEEE
T ss_pred HhHHHHHHHHHHHh-CCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHH----hCCCCCEEEEe
Confidence 99999884 3333 6888 9999888887655444332222 4555 32 34567777766543 11123566666
Q ss_pred ecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC--------CC-CCCCCC----CcEEEEcccc
Q psy16512 208 PAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN--------ML-DLKQHQ----PDFISISFYK 274 (815)
Q Consensus 208 ~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~--------~~-dl~~~~----~D~vv~S~~K 274 (815)
++++||||.++|.+++.++++ .|+++|+++|+|+++..... ++ ++...+ .++++.|+||
T Consensus 183 ~~p~nPtG~~~~~~~l~~l~~--------~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 254 (412)
T 1yaa_A 183 SCAHNPTGLDPTSEQWVQIVD--------AIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAK 254 (412)
T ss_dssp CSSCTTTCCCCCHHHHHHHHH--------HHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTT
T ss_pred CCCCCCCCCCCCHHHHHHHHH--------HHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCC
Confidence 999999999998776544433 22289999999999753211 11 221122 4578899999
Q ss_pred ccccCCc--ceEEE--E-----ecc----cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHH
Q psy16512 275 MFGYPTG--LGALI--V-----KQK----SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYG 341 (815)
Q Consensus 275 ~~g~p~G--~G~l~--~-----~~~----~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~a 341 (815)
.|| |+| +|+++ . +++ +++.+... .+....+++..+..++.++
T Consensus 255 ~~~-~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~------------------------~~~~~~~~~~~~~~a~~~~ 309 (412)
T 1yaa_A 255 NAG-MYGERVGCFHLALTKQAQNKTIKPAVTSQLAKI------------------------IRSEVSNPPAYGAKIVAKL 309 (412)
T ss_dssp TSC-CGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHH------------------------HHTTTSSCCHHHHHHHHHH
T ss_pred CCC-CcCCcceEEEEEecCCCCCHHHHHHHHHHHHHH------------------------HhhccCCCChHHHHHHHHH
Confidence 999 778 69998 6 444 33333111 0122235566777777677
Q ss_pred HHHHH------hhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHH
Q psy16512 342 FDTME------KKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQ 414 (815)
Q Consensus 342 l~~l~------~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~ 414 (815)
++... ..... .++++++++++.+.|+++... .+++++.+. ++++.+. +. +...+.
T Consensus 310 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~---~~~~~~~~~--------~~~~~~~--~~-----~~~~~~ 371 (412)
T 1yaa_A 310 LETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTP---GNWDHIVNQ--------CGMFSFT--GL-----TPQMVK 371 (412)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS---SCCTHHHHC--------CSSEEEC--CC-----CHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---CCeeeeccC--------ceEEEee--CC-----CHHHHH
Confidence 76432 11122 278888899999999886100 024444333 3333331 21 123466
Q ss_pred HhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 415 NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 415 ~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
+++.++||.+++ ++|||++. .+++++++++++|+++
T Consensus 372 ~~l~~~gi~v~~-------------------------------------------~~Ris~~~-~~~~~i~~~~~~l~~~ 407 (412)
T 1yaa_A 372 RLEETHAVYLVA-------------------------------------------SGRASIAG-LNQGNVEYVAKAIDEV 407 (412)
T ss_dssp HHHHHHCEECCT-------------------------------------------TSEEEGGG-CCTTTHHHHHHHHHHH
T ss_pred HHHHhCCEEecc-------------------------------------------CcEEEEcc-CCHhHHHHHHHHHHHH
Confidence 677788998853 37999985 4889999999999987
Q ss_pred Hh
Q psy16512 495 FL 496 (815)
Q Consensus 495 ~~ 496 (815)
+.
T Consensus 408 ~~ 409 (412)
T 1yaa_A 408 VR 409 (412)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 188
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.81 E-value=5e-19 Score=195.46 Aligned_cols=346 Identities=14% Similarity=0.093 Sum_probs=204.1
Q ss_pred chhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHH-HhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-E
Q psy16512 74 SQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKI-LQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-F 151 (815)
Q Consensus 74 p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~l-a~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-v 151 (815)
++.+.+++.+.+....+.+. ... ..++++.+ ++++|. .++ +++++|+|+|+.+++.++..++|| |
T Consensus 15 ~~~i~~a~~~~~~~~~~~~~------~~~----~~~l~~~~~a~~~g~-~~~--~v~~~sgt~al~~al~~l~~~~Gd~V 81 (377)
T 3ju7_A 15 VIEYLDELKEIDASHIYTNY------GPI----NQRFEQTIMSGFFQN-RGA--VTTVANATLGLMAAIQLKKRKKGKYA 81 (377)
T ss_dssp GGGGHHHHHHHHHHTCCSSS------CHH----HHHHHHHHHHHTSTT-CSE--EEEESCHHHHHHHHHHHHSCTTCCEE
T ss_pred cHHHHHHHHHHHHcCCcccC------CHH----HHHHHHHHHHHHhCC-CCe--EEEeCCHHHHHHHHHHHcCCCCcCEE
Confidence 45666777666654333210 122 78899999 999993 233 899999999999999998448999 9
Q ss_pred EEecCCCcchhhHHHHhhccc-eEEcCc-hhhhcchhhhhhhhhhhhhcCCC--ccEEEEecccCCCccccChHHHHHHh
Q psy16512 152 IYLTDNHTSVLGMRELVKTNQ-IYSFSV-DDARNMLNEFKESQENVENMRHS--NSLFVYPAESNFSGTKYPLSWCNTVH 227 (815)
Q Consensus 152 v~~~~~h~s~~~~~~~~~~~g-~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~--t~lv~i~~~~n~tG~~~~l~~I~~l~ 227 (815)
|++..+|+++.......+... .+++++ +..++++.+++++. +++ |++|+ ++|++|...|+++|.++|
T Consensus 82 i~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~------~~~~~tk~v~---~~~~~G~~~~~~~i~~la 152 (377)
T 3ju7_A 82 LMPSFTFPATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIE------ELKEEVAIVV---PYATFGSWMNLEEYEELE 152 (377)
T ss_dssp EEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHH------HHGGGEEEEC---CBCGGGBCCCCHHHHHHH
T ss_pred EECCCCcHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHh------cCCCCceEEE---EECCCCCccCHHHHHHHH
Confidence 999999998876655443332 555553 34567777776541 234 88887 567899999999999998
Q ss_pred hccccccccccCCCCeEEEEecccccCCCCCCCCCC---CCcEEEEcc--ccccccCCcceEEEEec-ccccccCccccc
Q psy16512 228 RNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQH---QPDFISISF--YKMFGYPTGLGALIVKQ-KSAHVLNKTFYG 301 (815)
Q Consensus 228 ~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~---~~D~vv~S~--~K~~g~p~G~G~l~~~~-~~~~~l~~~~~g 301 (815)
+ +|++||+|++|+.|... +.... ..|+.++|| ||+++ +...|+++.++ ++.++++.....
T Consensus 153 ~------------~~~~vi~D~a~a~g~~~-~~~~~g~~~~d~~~~S~~~~K~l~-~g~gG~~~~~~~~l~~~~~~~~~~ 218 (377)
T 3ju7_A 153 K------------KGVPVVVDAAPGFGLMN-GGMHYGQDFSGMIIYSFHATKPFG-IGEGGLIYSKNEEDIQRIKRMGNF 218 (377)
T ss_dssp H------------TTCCBEEECTTCTTCEE-TTEETTTTCSSEEEEECBTTSSSC-CBSCEEEEESCHHHHHHHHHHTBT
T ss_pred h------------cCCEEEEECCCccCCeE-CCEeccCCCCcEEEEECCCCCcCC-CCCcEEEEECCHHHHHHHHHHHhc
Confidence 7 68999999999988642 22122 257777775 69999 42356666654 344444333222
Q ss_pred CceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEE-
Q psy16512 302 GGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVEL- 380 (815)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l- 380 (815)
+... . +......+..+..++.+.+ ++..+..+....++.+++++++.+.|+++ +++.+
T Consensus 219 g~~~-------~----~~~~~~g~~~~~~~~~aa~----~~~~l~~l~~~~~~~~~~~~~~~~~L~~~------~~~~~~ 277 (377)
T 3ju7_A 219 GFDT-------N----RECTMMGFNCKMSEYAAAI----GIATMKKWDDKLKERTRISEWYKQLLQSN------GLMKKG 277 (377)
T ss_dssp TBCT-------T----SCBCSSCCBCCCCHHHHHH----HHHHHHTHHHHHHHHHHHHHHHHHHHHHT------TTTTTT
T ss_pred CCCC-------C----CceeeccccCCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCcccc
Confidence 2110 0 0000011222222222222 22333333333478888899999999887 33211
Q ss_pred cCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCc--cCCchhhhhhcCCCHHHHHHHhhcCCccCC
Q psy16512 381 YHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGC--HCNPGSCQRFLGLSDITIKFHFQQGHICGD 458 (815)
Q Consensus 381 ~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~--~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~ 458 (815)
+.+... ......++.+.+++. .+..++.+.|.++||.++.+. .|............
T Consensus 278 ~~~~~~--~~~~~~~~~~~~~~~----~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~---------------- 335 (377)
T 3ju7_A 278 WQLQKT--EAVIQQFMPILCPEE----VRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKST---------------- 335 (377)
T ss_dssp CBCCCC--SCBCCSSEEEECCTT----SCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBS----------------
T ss_pred ccCCCC--CcceEEEEEEEeCCh----hhHHHHHHHHHHCCCceecccCCccccchhhhcCCCC----------------
Confidence 111110 011122344544431 124568999999999998875 22211111000000
Q ss_pred cccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 459 DKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 459 ~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
...+.+....+.||++++...|++|+++++++|++++.+.
T Consensus 336 ~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~~ 375 (377)
T 3ju7_A 336 DLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVSA 375 (377)
T ss_dssp CCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC-----
T ss_pred CCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 0000111224789999999999999999999999877653
No 189
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.81 E-value=5.5e-20 Score=209.36 Aligned_cols=346 Identities=12% Similarity=0.064 Sum_probs=203.6
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHH
Q psy16512 61 DICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTV 140 (815)
Q Consensus 61 ~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~ 140 (815)
+.+|+|..+.... +.+.+++.+.+.... ..+..... ..+++++++++++.+ + ++||+|+|+|+.++
T Consensus 40 ~~~ylD~~~~~~~-~~v~~a~~~~l~~~~-----~~y~~~~~----~~~l~~~la~~~~~~--~--v~~t~~gt~A~~~a 105 (467)
T 2oqx_A 40 EDVFIDLLTDSGT-GAVTQSMQAAMMRGD-----EAYSGSRS----YYALAESVKNIFGYQ--Y--TIPTHQGRGAEQIY 105 (467)
T ss_dssp GGCSEECSCCSSC-SCCCHHHHHHTTSCC-----CCSSSCHH----HHHHHHHHHHHHCCS--E--EEEEC--CCSHHHH
T ss_pred CCeeEecccCCCc-HHHHHHHHHHhccCc-----ceeccCch----hHHHHHHHHHHhCcC--c--EEEcCCcHHHHHHH
Confidence 4578888765555 777887776653211 01111223 678999999999873 3 99999999999999
Q ss_pred HhhhccCC-----C----c-EEEecCCCcch-hhHHHHhhccceE--------EcC----chhhhcchhhhhhhhhhhhh
Q psy16512 141 SEYFEFNE-----G----S-FIYLTDNHTSV-LGMRELVKTNQIY--------SFS----VDDARNMLNEFKESQENVEN 197 (815)
Q Consensus 141 ~~al~~~~-----g----d-vv~~~~~h~s~-~~~~~~~~~~g~v--------~~~----~~~~~~~~~~~~~l~~~~~~ 197 (815)
+.++. ++ | | |+.. ..|... .......... .+ +.+ .++.++++.++++++. .
T Consensus 106 l~~~~-~~~~~~~G~~~~d~Ii~~-~~h~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~---~ 179 (467)
T 2oqx_A 106 IPVLI-KKREQEKGLDRSKMVAFS-NYFFDTTQGHSQINGCT-VRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEE---V 179 (467)
T ss_dssp HHHHH-HHHHHHHCCCTTTCEEEE-SSCCHHHHHHHHHTTCE-EEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHH---H
T ss_pred HHHHh-ccccccCCCCccceEEec-ccccccchhhhhccCcc-eeeccccccccCCCCCCccCCcCHHHHHHHHHh---c
Confidence 99987 66 7 8 6665 556332 2222221111 11 111 1234567777765531 0
Q ss_pred cCCCccEEEEecccCCC-ccccCh---HHHHHHhhccccccccccCCCCeEEEEeccccc-----------CCCCCCCCC
Q psy16512 198 MRHSNSLFVYPAESNFS-GTKYPL---SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC-----------GSNMLDLKQ 262 (815)
Q Consensus 198 ~~~~t~lv~i~~~~n~t-G~~~~l---~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~-----------g~~~~dl~~ 262 (815)
..+++++|++++++|++ |.++|. ++|.++|+ +||+++|+|++++. +....+...
T Consensus 180 ~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~-----------~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~ 248 (467)
T 2oqx_A 180 GPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAK-----------KYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQ 248 (467)
T ss_dssp CGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHH-----------HTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHH
T ss_pred CCCceeEEEEeccccCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEEchhhhhhhhhcccccccccCccHHH
Confidence 01368999999999998 888775 46677777 89999999988765 222222211
Q ss_pred ------CCCcEEEEccccccccCCcceEEEEecc-ccc---ccCccc-ccCceEEEEecCCcccccccCccccccCCCCC
Q psy16512 263 ------HQPDFISISFYKMFGYPTGLGALIVKQK-SAH---VLNKTF-YGGGTVKISMANENFHIKKDGLFEKFEDGTVN 331 (815)
Q Consensus 263 ------~~~D~vv~S~~K~~g~p~G~G~l~~~~~-~~~---~l~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 331 (815)
..+|++++|+||++|.|.| |+++.+++ +++ .+++.. .+++. ...++.+
T Consensus 249 ~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~ 307 (467)
T 2oqx_A 249 ITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDSFFDVYTECRTLCVVQEGF--------------------PTYGGLE 307 (467)
T ss_dssp HHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGGGHHHHHHHHHHHHHTTSS--------------------CCCCCCC
T ss_pred HhhhhhccCCeEEEecccccCCCCc-eEEEecChhHHHHHHHHHHhhhccCCc--------------------ccccchh
Confidence 2378889999999995545 67777766 433 222211 11111 1123344
Q ss_pred hhHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEec----CCCC
Q psy16512 332 YLAIISLKYGFDTMEKKR-KSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLH----KDGT 406 (815)
Q Consensus 332 ~~~~~al~~al~~l~~~~-~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~----~~~~ 406 (815)
...+.++..+++. ... ..+++..++++++.+.|.++ ++.+. +.. +.++++.+.. .+..
T Consensus 308 ~~~~~al~~~l~~--~~~~~~~~~~~~~~~~l~~~L~~~-------~~~~~-~~~-------~~~~~~~~~~~~~~~~~~ 370 (467)
T 2oqx_A 308 GGAMERLAVGLYD--GMNLDWLAYRIAQVQYLVDGLEEI-------GVVCQ-QAG-------GHAAFVDAGKLLPHIPAD 370 (467)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHT-------TCCEE-EEC-------SSCEEEEHHHHSTTSCGG
T ss_pred hhHHHHHHHhhHh--hhhHHHHHHHHHHHHHHHHHHHHC-------CCeee-cCC-------ceEEEEechhhcccCCcc
Confidence 4444444333221 111 12355677888899999876 34444 432 5677777642 2222
Q ss_pred ccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC-CCHHHH
Q psy16512 407 YYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA-SNWDDV 484 (815)
Q Consensus 407 ~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~-~t~edi 484 (815)
.++...+.+.| .++||.+.++..|..+.... .|. + .....+++|++++.. ++++|+
T Consensus 371 ~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~-~g~-------------------~--~~~~~~~iRl~~~~~~~t~e~i 428 (467)
T 2oqx_A 371 QFPAQALACELYKVAGIRAVEIGSFLLGRDPK-TGK-------------------Q--LPCPAELLRLTIPRATYTQTHM 428 (467)
T ss_dssp GCHHHHHHHHHHHHHCEECEEESHHHHCBCTT-TCS-------------------B--CCCSCCEEEECCCTTTSCHHHH
T ss_pred cccHHHHHHHHHHhcCceeccccccccccccc-ccc-------------------c--ccCccCeEEEEecCCCCCHHHH
Confidence 21122346667 89999998743221100000 000 0 001137899999998 999999
Q ss_pred HHHHHHHHHHHhh
Q psy16512 485 KYFLSFLNQYFLQ 497 (815)
Q Consensus 485 ~~lv~~L~~~~~~ 497 (815)
++++++|++++.+
T Consensus 429 ~~~~~~l~~~l~~ 441 (467)
T 2oqx_A 429 DFIIEAFKHVKEN 441 (467)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998754
No 190
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.81 E-value=4.4e-19 Score=200.75 Aligned_cols=343 Identities=10% Similarity=0.036 Sum_probs=213.7
Q ss_pred ccccchhhHHHHHHHHhh-ccccCCCChhhhhhhhhhhHHHHH-HHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccC
Q psy16512 70 AGVYSQSQMNQTIEQLKE-NIFSHPHGNSVLSDFCVSEIDQMR-TKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFN 147 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~-~~~~np~s~~~~~~~~~~~~~~~r-~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~ 147 (815)
....++.+.+++.+.+.+ ...++|.+.+.........++++. +++++++|++.. .++++|+++|+..++.++. +
T Consensus 54 ~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~---~v~~~sGs~a~~~a~~~~~-~ 129 (447)
T 3h7f_A 54 ENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFA---NVQPHSGAQANAAVLHALM-S 129 (447)
T ss_dssp CCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE---ECCCSSHHHHHHHHHHHHC-C
T ss_pred CCCCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCce---EEEeCCHHHHHHHHHHHhc-C
Confidence 445688888888766542 222344432111111111245454 999999998752 4447778899999999997 9
Q ss_pred CCc-EEEecCCCcchh-hH--HHHhhccc---eEEcCc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC
Q psy16512 148 EGS-FIYLTDNHTSVL-GM--RELVKTNQ---IYSFSV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP 219 (815)
Q Consensus 148 ~gd-vv~~~~~h~s~~-~~--~~~~~~~g---~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~ 219 (815)
+|| |++...+|++.+ .. ....+..- .++++. ++.++++.+++++. ..++++|+++.++|+++. +
T Consensus 130 ~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~------~~~~~~i~~~~~~~~~~~--~ 201 (447)
T 3h7f_A 130 PGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATAL------EFRPKVIIAGWSAYPRVL--D 201 (447)
T ss_dssp TTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHH------HHCCSEEEEECSSCCSCC--C
T ss_pred CCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHH------hcCCeEEEEcCCCCCCcc--C
Confidence 999 888888887732 11 11222211 234442 34567777776543 135789999899998876 9
Q ss_pred hHHHHHHhhccccccccccCCCCeEEEEecccccCC----CCCCCCCCCCcEEEEccccccccCCcceEEEEeccccccc
Q psy16512 220 LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS----NMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVL 295 (815)
Q Consensus 220 l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~----~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l 295 (815)
+++|.++|+ ++|+++|+|++|+.|. ...+.. .++|+++.|+||++++|.| |+++.++++.+.+
T Consensus 202 l~~i~~l~~-----------~~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK~l~G~~g-G~i~~~~~~~~~l 268 (447)
T 3h7f_A 202 FAAFRSIAD-----------EVGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHKTLGGGRS-GLIVGKQQYAKAI 268 (447)
T ss_dssp HHHHHHHHH-----------HHTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSGGGCCCSC-EEEEECGGGHHHH
T ss_pred HHHHHHHHH-----------HcCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCcCCCCCCe-EEEEECHHHHHHH
Confidence 999999999 8999999999987642 111111 2579999999999988876 9999988776555
Q ss_pred CcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHh-hhhhH-HHHHHHHHHHHHHHHhccccC
Q psy16512 296 NKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK-KRKSF-TNAFELSQYTYFYFKQLSYSN 373 (815)
Q Consensus 296 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~-~~~~~-~~~~~l~~~l~~~L~~l~~~~ 373 (815)
.+... .+..++++...+.++..++..+.. ..... ++..++++++.+.|.+...
T Consensus 269 ~~~~~-----------------------~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-- 323 (447)
T 3h7f_A 269 NSAVF-----------------------PGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDV-- 323 (447)
T ss_dssp HHHHT-----------------------TTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHH--
T ss_pred hhhcC-----------------------CcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 32211 122345666666676666655432 11222 7788888888888865300
Q ss_pred CCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcC
Q psy16512 374 GQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQG 453 (815)
Q Consensus 374 ~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~ 453 (815)
..++++++... ..++++.+.+... .++...+.+.|.++||.++...... ....
T Consensus 324 ~~~g~~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~~l~~~GI~v~~~~i~~--~~~~---------------- 376 (447)
T 3h7f_A 324 AKAGVSVVSGG------TDVHLVLVDLRDS---PLDGQAAEDLLHEVGITVNRNAVPN--DPRP---------------- 376 (447)
T ss_dssp HHTTCEEGGGS------CSSSEEEEECTTS---SCCHHHHHHHHHHTTEECBC---------------------------
T ss_pred cCCCeEEecCC------CCCCEEEEEcCCC---CCCHHHHHHHHHHCCeEEecccCCC--CCCC----------------
Confidence 00256766421 1245666665432 1234457788888999987321100 0000
Q ss_pred CccCCcccccCCCCceEEEEeccCC----CCHHHHHHHHHHHHHHHhhcCc
Q psy16512 454 HICGDDKDIIDGKPTGSIRISYGHA----SNWDDVKYFLSFLNQYFLQQAD 500 (815)
Q Consensus 454 ~~c~~~~~~~~~~~~g~iRvs~g~~----~t~edi~~lv~~L~~~~~~~~~ 500 (815)
...++.+|+++... .+++|+++++++|.+++.+..+
T Consensus 377 -----------p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~~~~ 416 (447)
T 3h7f_A 377 -----------PMVTSGLRIGTPALATRGFGDTEFTEVADIIATALATGSS 416 (447)
T ss_dssp ---------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHSGGG
T ss_pred -----------CCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhccCc
Confidence 01136799997654 4689999999999998876543
No 191
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.80 E-value=1e-19 Score=199.56 Aligned_cols=287 Identities=14% Similarity=0.094 Sum_probs=186.6
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc--EEE-ecCCCcchhhHHHHhhccc--eEEcCc-hh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS--FIY-LTDNHTSVLGMRELVKTNQ--IYSFSV-DD 180 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd--vv~-~~~~h~s~~~~~~~~~~~g--~v~~~~-~~ 180 (815)
..++++++++++|.+. .++++|+++|+.+++.++. .+|+ +|+ ....|++.......+...| .++++. ++
T Consensus 50 ~~~l~~~la~~~~~~~----~i~~~~g~~a~~~a~~~~~-~~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 124 (359)
T 3pj0_A 50 IEDFETKIAKILGKQS----AVFFPSGTMAQQIALRIWA-DRKENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGTANQ 124 (359)
T ss_dssp HHHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHHH-HHHTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSCTTS
T ss_pred HHHHHHHHHHHhCCCc----EEEeCCHHHHHHHHHHHHH-hcCCCcEEEEeccceeeehhcchHHHhcCceEEecCCcCC
Confidence 7899999999999854 3555888899999999887 6665 444 4455555443222212224 444443 33
Q ss_pred hhcchhhhhhhhhhhhhcCCCccEEEEecccCCC-ccccChHHH---HHHhhccccccccccCCCCeEEEEecccccCC-
Q psy16512 181 ARNMLNEFKESQENVENMRHSNSLFVYPAESNFS-GTKYPLSWC---NTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS- 255 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t-G~~~~l~~I---~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~- 255 (815)
.++++.+++ . .+++++|++++++|++ |.++|.+++ .++|+ ++|+++|+|+++..+.
T Consensus 125 ~~d~~~l~~-------~-~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~-----------~~~~~li~D~a~~~~~~ 185 (359)
T 3pj0_A 125 LLTIDDIKS-------L-REPVSSVLIELPQREIGGQLPAFEELEKISEYCH-----------EQGISLHLDGARLWEIT 185 (359)
T ss_dssp CCCHHHHHT-------C-SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHH-----------HHTCEEEEEETTCGGGH
T ss_pred CcCHHHHHh-------c-cCCceEEEEEecccCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEECcchhcch
Confidence 456666554 2 4679999999999998 799998887 66666 8999999999875432
Q ss_pred -----CCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCccc--ccCceEEEEecCCcccccccCccccccCC
Q psy16512 256 -----NMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTF--YGGGTVKISMANENFHIKKDGLFEKFEDG 328 (815)
Q Consensus 256 -----~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 328 (815)
.+.++. .+.|+++.|+||++++|.| |+++.++++++.++... .+++ ..
T Consensus 186 ~~~~~~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~~~~~~~-----------------------~~ 240 (359)
T 3pj0_A 186 PFYQKSAEEIC-ALFDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWKRRYGGD-----------------------LI 240 (359)
T ss_dssp HHHTCCHHHHH-TTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTTCC-----------------------CS
T ss_pred hhhCCCHHHhh-ccCCEEEEeccccCCCcce-EEEECCHHHHHHHHHHHHHhCCC-----------------------cc
Confidence 111111 3578999999999987766 88888888776653211 1100 00
Q ss_pred CCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEc-CCCCCCCCCcccceEEEEEecCCCCc
Q psy16512 329 TVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELY-HDTDYGESKYQGNIVNFNLLHKDGTY 407 (815)
Q Consensus 329 t~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~-~~~~~~~~~~~~~i~~f~~~~~~~~~ 407 (815)
+.+....+++ .+++. ....+++..++++++.+.|+++ |++++. .+. .++++.+.++....
T Consensus 241 ~~~~~~~a~~-~~l~~---~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~-------~~~~~~~~~~~~~~-- 301 (359)
T 3pj0_A 241 SLYPYILSAD-YYFEK---RIGKMAEYFEAAKGLAERFNSC------SGVKTVPEVP-------VSNMFHVYFENSAD-- 301 (359)
T ss_dssp CCHHHHHHHH-HHHHH---HGGGHHHHHHHHHHHHHHHHTS------TTEEEESSSC-------SSSEEEEEESSCHH--
T ss_pred hhHHHHHHHH-HHHHH---HHHHhHHHHHHHHHHHHHHhhC------CCceeeccCC-------cceEEEEEecCccc--
Confidence 1122222222 23332 2223366788889999999988 788885 333 26777877754211
Q ss_pred cCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC---CCHHHH
Q psy16512 408 YGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA---SNWDDV 484 (815)
Q Consensus 408 ~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~---~t~edi 484 (815)
.+..++.+.|.++||.+++|..+..+ ..+++|++++.. .+.+++
T Consensus 302 ~~~~~l~~~l~~~GV~v~~g~~~~~~---------------------------------~~~~~r~~i~~~~~~~~~e~l 348 (359)
T 3pj0_A 302 EIGAILTKIQDETGVGISGYLQEKSA---------------------------------DVCAFEVSVGDAFAEIPAKNL 348 (359)
T ss_dssp HHHHHHHHHHHHHCEECCSCCEEEET---------------------------------TEEEEEEECCTTGGGSCHHHH
T ss_pred hhHHHHHHHHHhcCcEecCCccccCC---------------------------------CceEEEEEecCccccCCHHHH
Confidence 12345788889999999988543211 137899998743 478888
Q ss_pred HHHHHHHHHH
Q psy16512 485 KYFLSFLNQY 494 (815)
Q Consensus 485 ~~lv~~L~~~ 494 (815)
+..++.|.+.
T Consensus 349 ~~~l~~l~~~ 358 (359)
T 3pj0_A 349 ELVFRCLEKE 358 (359)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8888888764
No 192
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.80 E-value=1.5e-19 Score=199.52 Aligned_cols=289 Identities=12% Similarity=0.074 Sum_probs=180.7
Q ss_pred HHHHHHHHhHcCCCC-CceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc--eEEcCchhhhc
Q psy16512 108 DQMRTKILQYFNTDS-DHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ--IYSFSVDDARN 183 (815)
Q Consensus 108 ~~~r~~la~~~g~~~-~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v~~~~~~~~~ 183 (815)
+++++.+++++|+++ ++ +++++|+++|+.+++.++ +|| |+++...|++...+...+...| .+.+ .+
T Consensus 61 ~~~~~~~a~~~g~~~~~~--~~~~~ggt~a~~~~~~~~---~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v-----~d 130 (374)
T 2aeu_A 61 EKVNEYGLKHLGGDENDK--CVGFNRTSSAILATILAL---KPKKVIHYLPELPGHPSIERSCKIVNAKYFES-----DK 130 (374)
T ss_dssp HHHHHHHHHHHTCCTTEE--EEEESSHHHHHHHHHHHH---CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE-----SC
T ss_pred HHHHHHHHHHhCCCCcce--EEEEcChHHHHHHHHHhC---CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe-----CC
Confidence 456677788999842 33 899999999999999987 788 8888887776555444445556 3333 24
Q ss_pred chhhhhhhhhhhhhcCCCccE-EEEecccCCCc-cccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC-CC-C
Q psy16512 184 MLNEFKESQENVENMRHSNSL-FVYPAESNFSG-TKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-ML-D 259 (815)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~t~l-v~i~~~~n~tG-~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-~~-d 259 (815)
++.+++ . ++++++ |++++++|||| ...++++|.++|+ ++|+++|+|++++.+.. +. .
T Consensus 131 ~~~l~~-------~-~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~-----------~~~~~li~De~~~~~~~~~~~~ 191 (374)
T 2aeu_A 131 VGEILN-------K-IDKDTLVIITGSTMDLKVIELENFKKVINTAK-----------NKEAIVFVDDASGARVRLLFNQ 191 (374)
T ss_dssp HHHHHT-------T-CCTTEEEEEECBCTTSCBCCHHHHHHHHHHHH-----------HHTCCEEEECTTHHHHHHHTTC
T ss_pred HHHHHh-------c-CCCccEEEEEccCCCCCCCCcccHHHHHHHHH-----------HcCCEEEEECCccccccccccc
Confidence 444433 2 467899 99999999999 8889999999999 89999999998876531 11 1
Q ss_pred --CCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHH
Q psy16512 260 --LKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIIS 337 (815)
Q Consensus 260 --l~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a 337 (815)
...+++|+++.|+||+++++ ++|++++++++++.++... ....++++.....+
T Consensus 192 ~~~~~~~~di~~~S~sK~l~g~-~~G~~~~~~~~~~~l~~~~------------------------~~~~~~~~~~~~~a 246 (374)
T 2aeu_A 192 PPALKLGADLVVTSTDKLMEGP-RGGLLAGKKELVDKIYIEG------------------------TKFGLEAQPPLLAG 246 (374)
T ss_dssp CCHHHHTCSEEEEETTSSSSSC-SCEEEEEEHHHHHHHHHHH------------------------HTTTCBCCHHHHHH
T ss_pred CCccccCCcEEEecCcccccCc-ceEEEEECHHHHHHHHHhh------------------------ccccCCCCHHHHHH
Confidence 11246899999999998855 7899999988876653221 11123556667777
Q ss_pred HHHHHHHHHhhhhhHHHHHHHH--------HHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCcc-
Q psy16512 338 LKYGFDTMEKKRKSFTNAFELS--------QYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYY- 408 (815)
Q Consensus 338 l~~al~~l~~~~~~~~~~~~l~--------~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~- 408 (815)
+.++++.+.. ..+++..+.+ +.+.+.|..+. ..+++.+..+. .+.++. ..........
T Consensus 247 ~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~g~~~~~~~-------~g~~~~-~~~~~~~~~~~ 313 (374)
T 2aeu_A 247 IYRALKNFNL--ERIRKAFERAKNFDLSKIEKLNKELKAID---DNINIVYERTP-------TGFVIK-RVYKDDTINIK 313 (374)
T ss_dssp HHHHHHHCCH--HHHHHHHHHHHHCCCHHHHHHHHHHTTTC---TTEEEEEEECS-------SEEEEE-EEESSHHHHHH
T ss_pred HHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hccCcceeeCC-------ceEEEE-eeccccccccc
Confidence 7777765321 0122333333 33444443320 01245543222 133322 2211100000
Q ss_pred C-HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC-CCHHHHHH
Q psy16512 409 G-YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA-SNWDDVKY 486 (815)
Q Consensus 409 ~-~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~-~t~edi~~ 486 (815)
+ .....+++.++||.+++|..+. + ..+++||+++.. ..++++++
T Consensus 314 ~~~~~~~~ll~~~gV~v~~g~~~~---------------------------------~-~~~~lRi~~~~~~~~~~~l~~ 359 (374)
T 2aeu_A 314 KLIEIGFNLLKNYGIITITVAGMP---------------------------------G-ASKSLRIDLTSRDAERIDDNY 359 (374)
T ss_dssp HHHHHHHHHHHHHCEECSTTSSSC---------------------------------S-SCCSEEEETTSGGGGGSCHHH
T ss_pred chHHHHHHHHHhCCEEEecCCCCC---------------------------------C-CCCeEEEEcCCchHHHHHHHH
Confidence 0 0013356678899998874321 0 136899999742 23445899
Q ss_pred HHHHHHHHHhh
Q psy16512 487 FLSFLNQYFLQ 497 (815)
Q Consensus 487 lv~~L~~~~~~ 497 (815)
++++|++.+.+
T Consensus 360 l~~~l~~~l~~ 370 (374)
T 2aeu_A 360 IIKAIVESIKM 370 (374)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 193
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.80 E-value=9.1e-19 Score=198.17 Aligned_cols=324 Identities=11% Similarity=0.056 Sum_probs=200.8
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc-CCC-----CCceeEEe--cCCc
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF-NTD-----SDHYSVIF--TSGA 133 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~-g~~-----~~~~~iv~--t~g~ 133 (815)
-.|+|..+.+.+.+.+.+++.+........+.. +..... ..++|+.+++++ |.+ +++ |++ |+|+
T Consensus 57 g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~--Y~~~~G----~~~lr~~ia~~l~g~~~~~~~~~~--i~~~~t~gg 128 (448)
T 3meb_A 57 GAYRDESGKPWILPAVKEAEAIISSDLSKYNKE--YPPVAG----FPLFLEAAQFLMFGKDSKAAQEGR--IASCQSLSG 128 (448)
T ss_dssp CCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCS--CCCTTC----CHHHHHHHHHHHHCTTCHHHHTTC--EEEEEESHH
T ss_pred ccccCCCCCEechHHHHHHHHHHhhcccCCCCC--CCCCcc----hHHHHHHHHHHhcCCCccccCcCc--EEEEECCcH
Confidence 356777777777777777654432111111222 111122 678999999987 876 455 999 9999
Q ss_pred hhhHHHH--HhhhccCCCc-EEEecCCCcchhhHHH----Hhhccc-eEEc-Cch--hhhcchhhhhhhhhhhhhcCCCc
Q psy16512 134 TSAIKTV--SEYFEFNEGS-FIYLTDNHTSVLGMRE----LVKTNQ-IYSF-SVD--DARNMLNEFKESQENVENMRHSN 202 (815)
Q Consensus 134 t~al~~~--~~al~~~~gd-vv~~~~~h~s~~~~~~----~~~~~g-~v~~-~~~--~~~~~~~~~~~l~~~~~~~~~~t 202 (815)
|+|+.++ +.++. .+|| |+++.+.|+++....+ .++... .++. +.+ ..++++.++++++ ...+++
T Consensus 129 t~al~l~~~~~~~~-~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~----~~~~~~ 203 (448)
T 3meb_A 129 TGSLHIGFEFLHLW-MPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQ----SAPEKS 203 (448)
T ss_dssp HHHHHHHHHHHHHH-CTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHH----HSCTTC
T ss_pred HHHHHHHHHHHHHh-CCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHH----hCCCCc
Confidence 9999884 44555 7898 9999988888766555 333222 5555 443 4667777776553 112457
Q ss_pred cEEEEecccCCCccccChHH---HHHHhhccccccccccCCCCeEEEEecccccCC-CCC-----CC----CCCCCcEEE
Q psy16512 203 SLFVYPAESNFSGTKYPLSW---CNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS-NML-----DL----KQHQPDFIS 269 (815)
Q Consensus 203 ~lv~i~~~~n~tG~~~~l~~---I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~-~~~-----dl----~~~~~D~vv 269 (815)
+++++++++||||..++.++ |+++|+ ++|+++++|+++.... ... .+ ......+++
T Consensus 204 ~~v~~~~p~NPtG~~~~~~~l~~i~~l~~-----------~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (448)
T 3meb_A 204 IFLFHACAHNPSGIDFTEAQWKELLPIMK-----------EKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVA 272 (448)
T ss_dssp EEEEESSSCTTTCCCCCHHHHHHHHHHHH-----------HHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEE
T ss_pred EEEEeCCCCCCCCcCCCHHHHHHHHHHHH-----------HCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEE
Confidence 89999999999999999777 555666 8999999999965322 111 00 111234678
Q ss_pred EccccccccCCc--ceEE--EE--------ec-----ccccccCcccccCceEEEEecCCcccccccCccccccCCCCCh
Q psy16512 270 ISFYKMFGYPTG--LGAL--IV--------KQ-----KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNY 332 (815)
Q Consensus 270 ~S~~K~~g~p~G--~G~l--~~--------~~-----~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 332 (815)
.|+||.|| ++| +|++ ++ ++ ++.+.+... .+....+++.
T Consensus 273 ~S~SK~~g-~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~------------------------~~~~~~~~~~ 327 (448)
T 3meb_A 273 QSFSKNFG-LYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQ------------------------IRKTWSMSAI 327 (448)
T ss_dssp EECTTTSC-CGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHH------------------------HHTTTSSCCH
T ss_pred ecccccCC-CccccceeeeeeeccccccccCCHHHHHHHHHHHHHH------------------------HhcccCCccH
Confidence 89999999 667 7998 55 33 222222110 1122334555
Q ss_pred hHHHHHHHHHHHH-------HhhhhhHHHHHHHHHHHHHHHHhccccCCCCc------EEEcCCCCCCCCCcccceEEEE
Q psy16512 333 LAIISLKYGFDTM-------EKKRKSFTNAFELSQYTYFYFKQLSYSNGQPL------VELYHDTDYGESKYQGNIVNFN 399 (815)
Q Consensus 333 ~~~~al~~al~~l-------~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~------~~l~~~~~~~~~~~~~~i~~f~ 399 (815)
.+..++..+++.. .......+++.++++++.+.|+++. .++ +....+. ++++.|
T Consensus 328 ~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~----~~~~~~~~~~~~~~~~--------~g~~~~- 394 (448)
T 3meb_A 328 HGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRK----TPGPGSKGTWDHILTA--------IGMFTF- 394 (448)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----CCCSTTTCCCTHHHHC--------CSSEEE-
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CCCcCcccccceeCCC--------ceEEEe-
Confidence 6666665555432 1111122788889999999998761 122 2222222 333333
Q ss_pred EecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCC
Q psy16512 400 LLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHAS 479 (815)
Q Consensus 400 ~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~ 479 (815)
.+.+ ...+..++.++||.+.+|+ + |+|++..
T Consensus 395 -~~~~-----~~~~~~ll~~~gV~v~~G~----------------------------------------g--Ris~a~~- 425 (448)
T 3meb_A 395 -TGLT-----PEHVDYLKEKWSIYLVKAG----------------------------------------G--RMSMCGL- 425 (448)
T ss_dssp -CCCC-----HHHHHHHHHHHCEEECSGG----------------------------------------G--EEEGGGC-
T ss_pred -cCCC-----HHHHHHHHHhCCEEEeCCC----------------------------------------c--EEEEecC-
Confidence 2211 2235566688999997641 2 9999754
Q ss_pred CHHHHHHHHHHHHHHHh
Q psy16512 480 NWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 480 t~edi~~lv~~L~~~~~ 496 (815)
+.++|++++++|.+++.
T Consensus 426 ~~~~i~~~~~~l~~~l~ 442 (448)
T 3meb_A 426 TESNCDYVAEAIHDAVT 442 (448)
T ss_dssp CTTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 45669999999999875
No 194
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.79 E-value=2.5e-18 Score=192.87 Aligned_cols=325 Identities=13% Similarity=0.072 Sum_probs=207.2
Q ss_pred hhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+. +..++.+.+++.+++.... +..... .... .+++++++++++|. ++ ++||+|++
T Consensus 56 g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~--~~~~~~-~~~~----~~~l~~~la~~~g~--~~--v~~~~ggt 124 (420)
T 2pb2_A 56 GKEYIDFAGGIAVTALGHCHPALVEALKSQGETLW--HTSNVF-TNEP----ALRLGRKLIDATFA--ER--VLFMNSGT 124 (420)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCC--CCCTTS-CCHH----HHHHHHHHHHHSSC--SE--EEEESSHH
T ss_pred CCEEEEccccccccccCCCCHHHHHHHHHHHHhcc--cccCcc-CCHH----HHHHHHHHHhhCCC--Ce--EEEeCCHH
Confidence 4456666432 2346788888887765422 221111 2233 78899999999984 44 99999999
Q ss_pred hhHHHHHhhhccC-------CCc--EEEecCCCcc-hhhHHHHhhcc----c-------eEEcCchhhhcchhhhhhhhh
Q psy16512 135 SAIKTVSEYFEFN-------EGS--FIYLTDNHTS-VLGMRELVKTN----Q-------IYSFSVDDARNMLNEFKESQE 193 (815)
Q Consensus 135 ~al~~~~~al~~~-------~gd--vv~~~~~h~s-~~~~~~~~~~~----g-------~v~~~~~~~~~~~~~~~~l~~ 193 (815)
+|+.+++.++. . +|+ ||+....|+. ...+....+.. + ...+.. .+++.+++
T Consensus 125 eA~~~al~~~~-~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~---~d~~~le~---- 196 (420)
T 2pb2_A 125 EANETAFKLAR-HYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF---NDLHAVKA---- 196 (420)
T ss_dssp HHHHHHHHHHH-HHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT---TCHHHHHH----
T ss_pred HHHHHHHHHHH-HHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC---CCHHHHHH----
Confidence 99999999875 3 563 7777766544 33333332211 1 111111 14444444
Q ss_pred hhhhcCCCccEEEEecccCCCcc-ccC---hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC--CC--CCCCCC
Q psy16512 194 NVENMRHSNSLFVYPAESNFSGT-KYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN--ML--DLKQHQ 264 (815)
Q Consensus 194 ~~~~~~~~t~lv~i~~~~n~tG~-~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~--~~--dl~~~~ 264 (815)
.+.+++++|+++.++|++|. .+| +++|.++|+ ++|+++|+|+++. ++.. .+ +.....
T Consensus 197 ---~i~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~-----------~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~ 262 (420)
T 2pb2_A 197 ---VMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCD-----------EHQALLVFDEVQCGMGRTGDLFAYMHYGVT 262 (420)
T ss_dssp ---HCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHH-----------HTTCEEEEECTTTTTTTTSSSSHHHHHTCC
T ss_pred ---HhccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHH-----------HcCCEEEEEcCCcCcccCCcHHHHHhcCCC
Confidence 33467999999999998886 344 666777777 8999999999985 2211 11 111235
Q ss_pred CcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH
Q psy16512 265 PDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT 344 (815)
Q Consensus 265 ~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~ 344 (815)
+|++ |++|++++...+|++++++++++.+.+...+ ...+.|..+..++.++++.
T Consensus 263 ~dii--t~sK~l~~G~~iG~~~~~~~l~~~l~~~~~~------------------------~t~~~~~~~~aa~~a~L~~ 316 (420)
T 2pb2_A 263 PDIL--TSAKALGGGFPVSAMLTTQEIASAFHVGSHG------------------------STYGGNPLACAVAGAAFDI 316 (420)
T ss_dssp CSEE--EECGGGGTTSCCEEEEECHHHHTTCC----C------------------------CEECCCHHHHHHHHHHHHH
T ss_pred CCeE--EecccccCCCceEEEEEhHHHHHhhcCCCcC------------------------cccCcCHHHHHHHHHHHHH
Confidence 7876 6789998222389999998876655331100 0114566777777777777
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEe
Q psy16512 345 MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQL 424 (815)
Q Consensus 345 l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v 424 (815)
+.. ....++.+++++++.+.|+++.. +.|.+.... ..+.++.+.+..... .+..++.+.|.++||.+
T Consensus 317 ~~~-~~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~~~--------~~g~~~~v~~~~~~~--~~~~~l~~~l~~~Gi~v 383 (420)
T 2pb2_A 317 INT-PEVLQGIHTKRQQFVQHLQAIDE--QFDIFSDIR--------GMGLLIGAELKPKYK--GRARDFLYAGAEAGVMV 383 (420)
T ss_dssp HSS-HHHHHHHHHHHHHHHHHHHHHHH--HHCCEEEEE--------EETTEEEEEECGGGT--TCHHHHHHHHHHTTEEC
T ss_pred HHh-ccHHHHHHHHHHHHHHHHHHHHh--cCCCeEEEE--------ecceEEEEEECCCch--HHHHHHHHHHHHCCCEE
Confidence 654 12238888899999998876510 002333221 237888888764211 12345778888899998
Q ss_pred ccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 425 RTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 425 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
+++. .+++|+++++..+++|+++++++|++++.
T Consensus 384 ~~~~---------------------------------------~~~iRl~~~~~~t~eei~~~~~~l~~~l~ 416 (420)
T 2pb2_A 384 LNAG---------------------------------------ADVMRFAPSLVVEEADIHEGMQRFAQAVG 416 (420)
T ss_dssp EESS---------------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EeCC---------------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 7641 26899999988999999999999998764
No 195
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.79 E-value=2.2e-18 Score=195.15 Aligned_cols=342 Identities=12% Similarity=0.047 Sum_probs=214.5
Q ss_pred hhhhhhhcc------cccchhhHHHHHHHHhhccccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 62 ICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 62 ~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
..|+|..+. +..++.+.+++.+.+.... .+.. ...... ..++++.++++++.++++ |+||+|++
T Consensus 50 ~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~---~~~~~~~~~~~----~~~l~~~la~~~~~~~~~--v~~~~ggs 120 (449)
T 3a8u_X 50 RKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD---YSPGFQYGHPL----SFQLAEKITDLTPGNLNH--VFFTDSGS 120 (449)
T ss_dssp CEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS---CCCSSSCCCHH----HHHHHHHHHTTSSTTEEE--EEEESSHH
T ss_pred CEEEECCccHhhccCCCCCHHHHHHHHHHHHhCC---CccccccCCHH----HHHHHHHHHHhCCCCCCE--EEEcCcHH
Confidence 456665321 2346888888877765321 1111 112233 678999999999877665 99999999
Q ss_pred hhHHHHHhhhcc-------CCCc-EEEecCCCcc-hhhHHHHhhc-----------cc--eEEcCchhh-----hc----
Q psy16512 135 SAIKTVSEYFEF-------NEGS-FIYLTDNHTS-VLGMRELVKT-----------NQ--IYSFSVDDA-----RN---- 183 (815)
Q Consensus 135 ~al~~~~~al~~-------~~gd-vv~~~~~h~s-~~~~~~~~~~-----------~g--~v~~~~~~~-----~~---- 183 (815)
+|+.+++.++.. .+++ ||+....|+. ........+. .+ .++++.... ++
T Consensus 121 ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~ 200 (449)
T 3a8u_X 121 ECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEG 200 (449)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSS
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHH
Confidence 999999988751 1566 7776665544 4434433221 12 233221100 12
Q ss_pred ----chhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cC
Q psy16512 184 ----MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CG 254 (815)
Q Consensus 184 ----~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g 254 (815)
++.++++++ +...+++++|+++..+|+||.+.| +++|.++|+ ++|+++|+|+++. +|
T Consensus 201 ~~~~~~~le~~l~---~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~-----------~~~~~li~Dev~~~~g 266 (449)
T 3a8u_X 201 GIALADELLKLIE---LHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICN-----------QHNILLVFDEVITGFG 266 (449)
T ss_dssp HHHHHHHHHHHHH---HHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHH-----------HHTCEEEEECTTTTTT
T ss_pred HHHHHHHHHHHHH---hcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHH-----------HhCCEEEEeccccCcc
Confidence 455554332 111135788888887888999888 999999999 8999999999994 55
Q ss_pred CCC--CCCC--CCCCcEEEEccccccccCCc---ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccC
Q psy16512 255 SNM--LDLK--QHQPDFISISFYKMFGYPTG---LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFED 327 (815)
Q Consensus 255 ~~~--~dl~--~~~~D~vv~S~~K~~g~p~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (815)
... ..+. ...+|++ |++|+|+ + | +|++++++++++.+......... ... .....
T Consensus 267 ~~g~~~~~~~~~~~~di~--s~sK~l~-~-G~~~~G~~~~~~~~~~~l~~~~~~~~~--------------~~~-~~~~t 327 (449)
T 3a8u_X 267 RTGSMFGADSFGVTPDLM--CIAKQVT-N-GAIPMGAVIASTEIYQTFMNQPTPEYA--------------VEF-PHGYT 327 (449)
T ss_dssp TTSSSSHHHHHTCCCSEE--EECGGGG-T-TSSCCEEEEEEHHHHHHHHTCSSCTTS--------------CSS-CCCCT
T ss_pred ccCcchhhhhcCCCCCEE--EEccccc-C-CCCceEEEEECHHHHHHhhccCccccc--------------ccc-cccCC
Confidence 321 1111 2347866 7779998 4 5 89999998776655321100000 000 00112
Q ss_pred CCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCc
Q psy16512 328 GTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTY 407 (815)
Q Consensus 328 gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~ 407 (815)
.+.|.++++++.++++.+... ...++.+++++++.+.|+++. ..+.+..+ ...+.++++.++......
T Consensus 328 ~~~~~~~~aa~~aal~~~~~~-~~~~~~~~~~~~l~~~L~~l~---~~~~~~~~--------~~~g~~~~i~~~~~~~~~ 395 (449)
T 3a8u_X 328 YSAHPVACAAGLAALCLLQKE-NLVQSVAEVAPHFEKALHGIK---GAKNVIDI--------RNFGLAGAIQIAPRDGDA 395 (449)
T ss_dssp TTTCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHTTT---TSTTEEEE--------EEETTEEEEEECCBTTBS
T ss_pred CcccHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHh---cCCCeEEE--------eeeEEEEEEEEecCcccc
Confidence 245677777778888877652 233888999999999998752 01333222 123788888886432110
Q ss_pred -cCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHH
Q psy16512 408 -YGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKY 486 (815)
Q Consensus 408 -~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~ 486 (815)
.+..++.+.|.++||.++++ .+++|+++++..+++|+++
T Consensus 396 ~~~~~~~~~~l~~~Gv~v~~~----------------------------------------g~~iRis~~~~~t~~~i~~ 435 (449)
T 3a8u_X 396 IVRPFEAGMALWKAGFYVRFG----------------------------------------GDTLQFGPTFNSKPQDLDR 435 (449)
T ss_dssp SHHHHHHHHHHHHHTEECEEE----------------------------------------TTEEEECCCTTCCHHHHHH
T ss_pred cccHHHHHHHHHHCCcEEecC----------------------------------------CCEEEEECCCcCCHHHHHH
Confidence 01124777777889998753 1579999998999999999
Q ss_pred HHHHHHHHHhh
Q psy16512 487 FLSFLNQYFLQ 497 (815)
Q Consensus 487 lv~~L~~~~~~ 497 (815)
++++|++++.+
T Consensus 436 ~l~~l~~~l~~ 446 (449)
T 3a8u_X 436 LFDAVGEVLNK 446 (449)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998743
No 196
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.79 E-value=6.5e-18 Score=190.14 Aligned_cols=346 Identities=12% Similarity=0.030 Sum_probs=204.1
Q ss_pred hhhhhhhccc------ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchh
Q psy16512 62 ICYLDYTGAG------VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATS 135 (815)
Q Consensus 62 ~iyLd~a~~~------~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~ 135 (815)
..|+|..+.. ..++.+.+++.+++.......+. ...... ..+++++++++++.+.++ |+||+|+++
T Consensus 29 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~----~~~l~~~la~~~~~~~~~--v~~~~gg~e 100 (430)
T 3i4j_A 29 RRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGS--QFSSDV----LEEYAGRLARFVGLPTFR--FWAVSGGSE 100 (430)
T ss_dssp CEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTT--TCEEHH----HHHHHHHHHHHTTCTTCE--EEEESSHHH
T ss_pred CEEEECCCchhccccCCCCHHHHHHHHHHHHhccccccc--ccCCHH----HHHHHHHHHHhCCCCCCE--EEEeCcHHH
Confidence 4566665431 23788888888776543221111 122233 678889999999987776 999999999
Q ss_pred hHHHHHhhhcc-------CCCc-EEEecCCCcchhhHHHHhhcc--------------c--eEEcCch---hhhcchhhh
Q psy16512 136 AIKTVSEYFEF-------NEGS-FIYLTDNHTSVLGMRELVKTN--------------Q--IYSFSVD---DARNMLNEF 188 (815)
Q Consensus 136 al~~~~~al~~-------~~gd-vv~~~~~h~s~~~~~~~~~~~--------------g--~v~~~~~---~~~~~~~~~ 188 (815)
|+..++.++.. ..++ +|+....|+........+... + .++.+.. +..+++.++
T Consensus 101 a~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le 180 (430)
T 3i4j_A 101 ATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLR 180 (430)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHH
Confidence 99999988752 1244 777776655433221111111 1 1222111 122345555
Q ss_pred hhhhhhhhhcC-CCccEEEEecccC-CCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC--CCC
Q psy16512 189 KESQENVENMR-HSNSLFVYPAESN-FSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN--MLD 259 (815)
Q Consensus 189 ~~l~~~~~~~~-~~t~lv~i~~~~n-~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~--~~d 259 (815)
++++ ... +++++|+++.++| ++|.+.+ +++|.++|+ ++|+++|+|+++. ++.. ...
T Consensus 181 ~~l~----~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~-----------~~~~~li~DEv~~~~~~~g~~~~ 245 (430)
T 3i4j_A 181 ALLE----REGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICD-----------EAGIIFIADEVMSGMGRCGSPLA 245 (430)
T ss_dssp HHHH----HHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHH-----------HHTCEEEEECTTTTTTTTSSSSG
T ss_pred HHHH----hcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHH-----------HcCCEEEEechhhCCCcccchhh
Confidence 5443 111 4567888888888 9999887 888899998 8999999999976 3221 111
Q ss_pred CC---CCCCcEEEEccccccccCCc---ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChh
Q psy16512 260 LK---QHQPDFISISFYKMFGYPTG---LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYL 333 (815)
Q Consensus 260 l~---~~~~D~vv~S~~K~~g~p~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 333 (815)
.. ...+|++ +++|.++ + | +|++++++++++.+.+.- .. . ......+.|.+
T Consensus 246 ~~~~~~~~~di~--t~sK~l~-~-G~~r~G~~~~~~~i~~~~~~~~---~~----------------~-~~~~t~~~~~~ 301 (430)
T 3i4j_A 246 LSRWSGVTPDIA--VLGKGLA-A-GYAPLAGLLAAPQVYETVMGGS---GA----------------F-MHGFTYAGHPV 301 (430)
T ss_dssp GGGTTTCCCSEE--EECGGGT-T-TSSCCEEEEECHHHHHHHHHTT---CB----------------C-CCCCTTTTCHH
T ss_pred hhhhcCCCCcEE--EEccccc-C-CccccEEEEECHHHHHHHhccC---Cc----------------c-cccCCCCCCHH
Confidence 11 2346766 4679998 4 5 799999988876553210 00 0 01112245677
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCc-----c
Q psy16512 334 AIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTY-----Y 408 (815)
Q Consensus 334 ~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~-----~ 408 (815)
+..++.++++.+... ...++.+++.+++.+.|.++. ...|.+..+.+ .+.++.+.+.+..... -
T Consensus 302 ~~aaa~aal~~~~~~-~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~--------~g~~~~~~~~~~~~~~~~~~~~ 370 (430)
T 3i4j_A 302 SVAAGLSVLDIVERE-DLTGAAKERGAQLLAGLQALQ--ARFPQMMQVRG--------TGLLLGVVLGDLATGQAFETPG 370 (430)
T ss_dssp HHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHH--HHCTTEEEEEE--------ETTEEEEEEC------------
T ss_pred HHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHH--HhCCCeEEEEE--------EEEEEEEEeccccccCCCccHH
Confidence 777777888876542 223667777777777665531 00145554432 3678888875322100 0
Q ss_pred CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHH
Q psy16512 409 GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFL 488 (815)
Q Consensus 409 ~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv 488 (815)
...++.+.|.++||.++++.+... +...+++||++++..+++++++++
T Consensus 371 ~~~~~~~~l~~~Gv~v~~~~~~~~--------------------------------~~~~~~iRi~~~~~~t~e~i~~~l 418 (430)
T 3i4j_A 371 IASRIGAAALKRGLITYPGSGAEP--------------------------------NGRGDHLLLGPPLSITAAEVDGLL 418 (430)
T ss_dssp CHHHHHHHHHHTTEECC-------------------------------------------CEEEECCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEecccccC--------------------------------CCCCCEEEEECCCCCCHHHHHHHH
Confidence 123577888899999987632111 111378999999889999999999
Q ss_pred HHHHHHHhh
Q psy16512 489 SFLNQYFLQ 497 (815)
Q Consensus 489 ~~L~~~~~~ 497 (815)
++|++++.+
T Consensus 419 ~~l~~~l~~ 427 (430)
T 3i4j_A 419 ALLAGALED 427 (430)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998753
No 197
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.79 E-value=7.3e-18 Score=189.08 Aligned_cols=324 Identities=14% Similarity=0.083 Sum_probs=206.1
Q ss_pred hhhhhhhhccc---c---c-chhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCC-CCceeEEecCC
Q psy16512 61 DICYLDYTGAG---V---Y-SQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTD-SDHYSVIFTSG 132 (815)
Q Consensus 61 ~~iyLd~a~~~---~---~-p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~-~~~~~iv~t~g 132 (815)
+..|+|..+.. + . ++.+.+++.+.+.......+.+ + .... ..++++.+++++|.+ +++ |+||+|
T Consensus 41 g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~~-~-~~~~----~~~l~~~la~~~~~~~~~~--v~~~~g 112 (419)
T 2eo5_A 41 GNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAAND-F-YNIP----QLELAKKLVTYSPGNFQKK--VFFSNS 112 (419)
T ss_dssp SCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCSC-S-CCHH----HHHHHHHHHHHSSCSSCEE--EEEESS
T ss_pred CCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccccccc-c-CCHH----HHHHHHHHHHhCCCCcCCE--EEEeCc
Confidence 34677765433 2 2 6888898888775422111111 1 1122 567888999999987 555 999999
Q ss_pred chhhHHHHHhhhccCCCc-EEEecCCCc-chhhHHHHhhc------------cc--eEEcCchhh---------------
Q psy16512 133 ATSAIKTVSEYFEFNEGS-FIYLTDNHT-SVLGMRELVKT------------NQ--IYSFSVDDA--------------- 181 (815)
Q Consensus 133 ~t~al~~~~~al~~~~gd-vv~~~~~h~-s~~~~~~~~~~------------~g--~v~~~~~~~--------------- 181 (815)
+++|+.+++.++...+|+ ||+....|+ +.......... .+ .++.+.+..
T Consensus 113 g~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~ 192 (419)
T 2eo5_A 113 GTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELV 192 (419)
T ss_dssp HHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHH
T ss_pred hHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhH
Confidence 999999999876421366 877776554 44433332111 02 333332110
Q ss_pred -hcchhhh-hhhhhhhhhcC-CCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-c
Q psy16512 182 -RNMLNEF-KESQENVENMR-HSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-C 253 (815)
Q Consensus 182 -~~~~~~~-~~l~~~~~~~~-~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~ 253 (815)
.+++.++ ++++ +... +++++|+++.++|+||.+.+ +++|.++|+ ++|+++|+|+++. +
T Consensus 193 ~~~~~~l~~~~i~---~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~-----------~~~~~li~DE~~~~~ 258 (419)
T 2eo5_A 193 NRVIEFIEDYIFV---NLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAK-----------KYGILLVDDEVQMGL 258 (419)
T ss_dssp HHHHHHHHHTHHH---HTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHH-----------HHTCEEEEECTTTTT
T ss_pred HHHHHHHHHHHHh---hccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEeccccCC
Confidence 2345555 5432 1100 34677777766778998777 888888888 8999999999987 4
Q ss_pred CCCC----CCCCCCCCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCC
Q psy16512 254 GSNM----LDLKQHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDG 328 (815)
Q Consensus 254 g~~~----~dl~~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 328 (815)
+... ++.....+|++ |++|.|+++ -++|+++++++++ .+ ... .....
T Consensus 259 g~~g~~~~~~~~~~~~d~~--t~sK~~~~G~~riG~~~~~~~~~-~~-~~~------------------------~~~t~ 310 (419)
T 2eo5_A 259 GRTGKLFAIENFNTVPDVI--TLAKALGGGIMPIGATIFRKDLD-FK-PGM------------------------HSNTF 310 (419)
T ss_dssp TTTSSSSGGGGGTCCCSEE--EECGGGGTTTSCCEEEEEEGGGC-CC-------------------------------CC
T ss_pred ccCcchhhHHhcCCCCCEE--EecccccCCccceEEEEEchHhh-cC-Ccc------------------------cCCCC
Confidence 3221 12223356765 688999843 4579999998765 43 100 01122
Q ss_pred CCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCcc
Q psy16512 329 TVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYY 408 (815)
Q Consensus 329 t~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~ 408 (815)
+.|.+++.++.++++.+.+ ..++++++++++.+.|.++. ..+ ...++++.+.+.. +. .
T Consensus 311 ~~n~~~~~aa~aal~~~~~---~~~~~~~~~~~l~~~L~~~~-----~~~-----------~~~g~~~~i~~~~-~~-~- 368 (419)
T 2eo5_A 311 GGNALACAIGSKVIDIVKD---LLPHVNEIGKIFAEELQGLA-----DDV-----------RGIGLAWGLEYNE-KK-V- 368 (419)
T ss_dssp CCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTTSS-----SEE-----------EEETTEEEEECSC-HH-H-
T ss_pred CCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh-----hhe-----------EeeeEEEEEEEec-Cc-c-
Confidence 4577888888888887654 34888899999999987640 111 1236777777631 00 0
Q ss_pred CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHH
Q psy16512 409 GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFL 488 (815)
Q Consensus 409 ~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv 488 (815)
... +.+.|.++||.++++. .+++||++++..+++++++++
T Consensus 369 ~~~-~~~~l~~~Gv~v~~~~---------------------------------------~~~lRis~~~~~t~e~i~~~l 408 (419)
T 2eo5_A 369 RDR-IIGESFKRGLLLLPAG---------------------------------------RSAIRVIPPLVISEEEAKQGL 408 (419)
T ss_dssp HHH-HHHHHHHTTEECEEET---------------------------------------TTEEEECCCTTCCHHHHHHHH
T ss_pred HHH-HHHHHHHCCCEEecCC---------------------------------------CCEEEEECCCCCCHHHHHHHH
Confidence 122 5666778999987641 268999999999999999999
Q ss_pred HHHHHHHh
Q psy16512 489 SFLNQYFL 496 (815)
Q Consensus 489 ~~L~~~~~ 496 (815)
++|++++.
T Consensus 409 ~~l~~~l~ 416 (419)
T 2eo5_A 409 DILKKVIK 416 (419)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 198
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.79 E-value=7.1e-18 Score=190.35 Aligned_cols=340 Identities=11% Similarity=0.035 Sum_probs=213.0
Q ss_pred hhhhhhhhcccc------cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCC-CceeEEecCCc
Q psy16512 61 DICYLDYTGAGV------YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDS-DHYSVIFTSGA 133 (815)
Q Consensus 61 ~~iyLd~a~~~~------~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~-~~~~iv~t~g~ 133 (815)
+..|+|..+... .++.+.+++.+.+.... +.......... ..+++++++++++... ++ ++||+|+
T Consensus 42 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~~~~~~~----~~~l~~~la~~~~~~~~~~--v~~~~gg 113 (439)
T 3dxv_A 42 GRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPA--GATILSASNAP----AVTLAERLLASFPGEGTHK--IWFGHSG 113 (439)
T ss_dssp SCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCS--CSCSSSSEEHH----HHHHHHHHHHTTTCTTTEE--EEEESSH
T ss_pred CCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcc--CccccccCCHH----HHHHHHHHHHhCCCCCCCE--EEEeCCH
Confidence 345666654333 56788888877765421 11111222333 7789999999997655 44 9999999
Q ss_pred hhhHHHHHhhhc--cCCCcEEEecCCC-cchhhHHHHhhcc------c---------eEEcCchhhh-----cchhhhhh
Q psy16512 134 TSAIKTVSEYFE--FNEGSFIYLTDNH-TSVLGMRELVKTN------Q---------IYSFSVDDAR-----NMLNEFKE 190 (815)
Q Consensus 134 t~al~~~~~al~--~~~gdvv~~~~~h-~s~~~~~~~~~~~------g---------~v~~~~~~~~-----~~~~~~~~ 190 (815)
++|+..++.++. ..++++|+....| .+........... + .++.+..... +++.++++
T Consensus 114 sea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 193 (439)
T 3dxv_A 114 SDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEK 193 (439)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHH
Confidence 999999998842 1445577666554 4443332221110 0 1111111000 34455543
Q ss_pred hhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCC----CCCCCC
Q psy16512 191 SQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGS----NMLDLK 261 (815)
Q Consensus 191 l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~----~~~dl~ 261 (815)
++ +...+++++|+++.++|++|.+.| +++|.++|+ +||+++|+|+++. ++. ...+..
T Consensus 194 l~---~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~-----------~~~~~li~DE~~~g~g~~g~~~~~~~~ 259 (439)
T 3dxv_A 194 LA---AVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICR-----------AHGILVVCDEVKVGLARSGRLHCFEHE 259 (439)
T ss_dssp HH---TSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHH-----------HTTCEEEEECTTTCTTTTSSSSGGGGT
T ss_pred HH---hcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEeccccCCCcCchhhHHHhc
Confidence 31 112456899999999999999999 899999999 8999999999986 221 111222
Q ss_pred CCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 262 QHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 262 ~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
...+|++ |++|.|+ + | +|++++++++++.+.+... .... .+..++.++.
T Consensus 260 ~~~~di~--s~sK~~~-~-G~riG~~~~~~~~~~~~~~~~~------------------------~~t~-~~~~~~~aa~ 310 (439)
T 3dxv_A 260 GFVPDIL--VLGKGLG-G-GLPLSAVIAPAEILDCASAFAM------------------------QTLH-GNPISAAAGL 310 (439)
T ss_dssp TCCCSEE--EECGGGG-T-TSCCEEEEEEHHHHTSCSSSSC------------------------CTTT-TCHHHHHHHH
T ss_pred CCCCCEE--EEcchhc-C-CcceEEEEECHHHHhhhcCCCc------------------------CCCc-ccHHHHHHHH
Confidence 3357776 7889998 4 5 7999999888766543210 1112 4566677777
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC----CccCHHHHHH
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG----TYYGYSEVQN 415 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~----~~~~~~~v~~ 415 (815)
++++.+.. ....++.+++++++.+.|.++... .+.+.... ..+.++.+.+..... .......+.+
T Consensus 311 aal~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (439)
T 3dxv_A 311 AVLETIDR-DDLPAMAERKGRLLRDGLSELAKR--HPLIGDIR--------GRGLACGMELVCDRQSREPARAETAKLIY 379 (439)
T ss_dssp HHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHH--CTTEEEEE--------EETTEEEEEEEEETTTTEECHHHHHHHHH
T ss_pred HHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEE--------EEEEEEEEEEecCccccCCCHHHHHHHHH
Confidence 77776655 222377788888888877664100 03344332 236788887742110 1111335777
Q ss_pred hhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 416 LANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 416 ~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.|.++||.++++.. ..+++|+++++..+++++++++++|++++
T Consensus 380 ~l~~~Gv~v~~~~~-------------------------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 422 (439)
T 3dxv_A 380 RAYQLGLVVYYVGM-------------------------------------NGNVLEFTPPLTITETDIHKALDLLDRAF 422 (439)
T ss_dssp HHHHHTEECEEEST-------------------------------------TSCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHCCcEEeecCC-------------------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 78788999886521 13789999999999999999999999988
Q ss_pred hhcC
Q psy16512 496 LQQA 499 (815)
Q Consensus 496 ~~~~ 499 (815)
.+-.
T Consensus 423 ~~~~ 426 (439)
T 3dxv_A 423 SELS 426 (439)
T ss_dssp HTGG
T ss_pred HHHh
Confidence 6543
No 199
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.79 E-value=2.6e-17 Score=185.67 Aligned_cols=325 Identities=12% Similarity=0.069 Sum_probs=211.6
Q ss_pred hhhhhhhhcc---cc---cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGA---GV---YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~---~~---~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+. .. .++.+.+++.+++.... +.++.. .... ..++++++++++|. +. ++|++|++
T Consensus 75 g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~--~~~~~~-~~~~----~~~l~~~la~~~g~--~~--v~~~~sGs 143 (439)
T 2oat_A 75 GRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLT--LTSRAF-YNNV----LGEYEEYITKLFNY--HK--VLPMNTGV 143 (439)
T ss_dssp CCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCS--CCCTTS-EESS----HHHHHHHHHHHHTC--SE--EEEESSHH
T ss_pred CCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcC--cccCcc-CCHH----HHHHHHHHHHhcCC--CE--EEEeCCHH
Confidence 4567775441 11 56888888887765422 111111 2233 77899999999984 44 99999999
Q ss_pred hhHHHHHhhhcc--------CCC-c-EEEecCCC-cchhhHHHHhhc-----------cceEEcCchhhhcchhhhhhhh
Q psy16512 135 SAIKTVSEYFEF--------NEG-S-FIYLTDNH-TSVLGMRELVKT-----------NQIYSFSVDDARNMLNEFKESQ 192 (815)
Q Consensus 135 ~al~~~~~al~~--------~~g-d-vv~~~~~h-~s~~~~~~~~~~-----------~g~v~~~~~~~~~~~~~~~~l~ 192 (815)
+|+..++.++.. .+| + +|+....| .+.......... .+...+.. .+++.++++++
T Consensus 144 eA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~---~d~~~le~~l~ 220 (439)
T 2oat_A 144 EAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY---NDLPALERALQ 220 (439)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS---SCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC---CCHHHHHHHhC
Confidence 999999987641 246 5 77777655 444444333221 11222221 14445544331
Q ss_pred hhhhhcCCCccEEEEecccCCCcccc----ChHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC--C--CCCCCC
Q psy16512 193 ENVENMRHSNSLFVYPAESNFSGTKY----PLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN--M--LDLKQH 263 (815)
Q Consensus 193 ~~~~~~~~~t~lv~i~~~~n~tG~~~----~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~--~--~dl~~~ 263 (815)
.+++++|+++.+++++|.+. ++++|.++|+ ++|+++|+|+++. ++.. . .+....
T Consensus 221 ------~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~-----------~~gillI~DEv~~g~g~~g~~~~~~~~~~ 283 (439)
T 2oat_A 221 ------DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCT-----------RHQVLFIADEIQTGLARTGRWLAVDYENV 283 (439)
T ss_dssp ------STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHH-----------HTTCEEEEECTTTTTTTTSSSSGGGGGTC
T ss_pred ------CCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEeccccCCccCCcchhHHHhCC
Confidence 35688999888888899877 6888999998 8999999999984 2211 1 111223
Q ss_pred CCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHH
Q psy16512 264 QPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGF 342 (815)
Q Consensus 264 ~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al 342 (815)
.+|++ |++|.+++. ..+|++++++++++.+.+... ....+.|..+.+++.+++
T Consensus 284 ~~Di~--t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~------------------------~~t~~~~~~~~aaa~aal 337 (439)
T 2oat_A 284 RPDIV--LLGKALSGGLYPVSAVLCDDDIMLTIKPGEH------------------------GSTYGGNPLGCRVAIAAL 337 (439)
T ss_dssp CCSEE--EECGGGGTTSSCCEEEEECHHHHTTSCTTSS------------------------CCSSTTCHHHHHHHHHHH
T ss_pred CCcEE--EecccccCCCCCeEEEEECHHHHhccCCCCc------------------------ccCCCcCHHHHHHHHHHH
Confidence 57876 788999831 128999999887765543110 001144667777777888
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCc
Q psy16512 343 DTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKI 422 (815)
Q Consensus 343 ~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI 422 (815)
+.+... ...++.+++++++.+.|+++. .+.+... ...+.++.+.+..... .+..++.+.|.++||
T Consensus 338 ~~~~~~-~~~~~~~~~~~~l~~~L~~l~----~~~~~~~--------~~~g~~~~v~l~~~~~--~~~~~l~~~l~~~Gv 402 (439)
T 2oat_A 338 EVLEEE-NLAENADKLGIILRNELMKLP----SDVVTAV--------RGKGLLNAIVIKETKD--WDAWKVCLRLRDNGL 402 (439)
T ss_dssp HHHHHT-THHHHHHHHHHHHHHHHTTSC----TTTEEEE--------EEETTEEEEEECCCSS--CCHHHHHHHHHHTTE
T ss_pred HHHhhh-hHHHHHHHHHHHHHHHHHHhc----CCCcEEE--------EeeeeEEEEEEecCcc--HHHHHHHHHHHHCCe
Confidence 877653 223889999999999998762 1322222 1236888888764311 123467888888999
Q ss_pred EeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 423 QLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 423 ~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.++++. .+++|+++++..+++|+++++++|++++.
T Consensus 403 ~v~~~~---------------------------------------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 437 (439)
T 2oat_A 403 LAKPTH---------------------------------------GDIIRFAPPLVIKEDELRESIEIINKTIL 437 (439)
T ss_dssp ECCBSS---------------------------------------SSEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEecCC---------------------------------------CCEEEEECccCCCHHHHHHHHHHHHHHHH
Confidence 987520 27899999999999999999999998764
No 200
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.78 E-value=3e-18 Score=197.92 Aligned_cols=153 Identities=18% Similarity=0.156 Sum_probs=108.5
Q ss_pred eEEecCCchhhHHHHHhhh----ccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhh--hcchhhhhhhhhh
Q psy16512 126 SVIFTSGATSAIKTVSEYF----EFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDA--RNMLNEFKESQEN 194 (815)
Q Consensus 126 ~iv~t~g~t~al~~~~~al----~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~--~~~~~~~~~l~~~ 194 (815)
+|++|+|+++|+.+++.++ ..++|| |++..+.|+.+....... ..| .++.++++. ++++.++++
T Consensus 167 ~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~~~l~~~---- 241 (546)
T 2zy4_A 167 NLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELA-QYALEEVAINADPSLNWQYPDSELDKL---- 241 (546)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHST-TSCCEEEEEECBGGGTTBCCHHHHGGG----
T ss_pred eEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHc-CCCcEEEEEecCcccCCCCCHHHHHHh----
Confidence 4999999999999999884 127899 888888887766544333 223 455555442 555555542
Q ss_pred hhhcCCCccEEEEecccCCCccccChHHHHHHhhcccccccccc--CCCCeEEEEecccccCCC-CCCCCC--CCCcEEE
Q psy16512 195 VENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKC--SRSNCFVLLDAATYCGSN-MLDLKQ--HQPDFIS 269 (815)
Q Consensus 195 ~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~--~~~gi~vivD~a~~~g~~-~~dl~~--~~~D~vv 269 (815)
..+++++|++++++||||.++|.+++.++++ .| +++|+++|+|++++.... +.++.. .+.++++
T Consensus 242 ---~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~--------~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~ 310 (546)
T 2zy4_A 242 ---KDPAIKIFFCVNPSNPPSVKMDQRSLERVRN--------IVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLV 310 (546)
T ss_dssp ---GSTTEEEEEEESSCSSSCBCCCHHHHHHHHH--------HHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEE
T ss_pred ---hCCCCeEEEEECCCCCCCccCCHHHHHHHHH--------HHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEE
Confidence 3467999999999999999999777655544 22 389999999999874331 111111 1356889
Q ss_pred EccccccccCCc--ceEEEEecc-ccccc
Q psy16512 270 ISFYKMFGYPTG--LGALIVKQK-SAHVL 295 (815)
Q Consensus 270 ~S~~K~~g~p~G--~G~l~~~~~-~~~~l 295 (815)
.|+||+|| .+| +||++++++ +++.+
T Consensus 311 ~S~SK~~g-~~GlRiG~~~~~~~~l~~~l 338 (546)
T 2zy4_A 311 YSFSKYFG-ATGWRLGVVAAHQQNVFDLA 338 (546)
T ss_dssp EESTTTTT-CGGGCEEEEEEESSCHHHHH
T ss_pred EeCccccC-CCCcceEEEEECCHHHHHHH
Confidence 99999998 558 799999886 55443
No 201
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.78 E-value=2.6e-18 Score=192.96 Aligned_cols=285 Identities=13% Similarity=0.093 Sum_probs=187.0
Q ss_pred HHHHHHHHHhHcC------CCCCceeEEecCCchhhHHHHHhhh--------ccCCCc-EEEecCCCcchhhHHHHhhcc
Q psy16512 107 IDQMRTKILQYFN------TDSDHYSVIFTSGATSAIKTVSEYF--------EFNEGS-FIYLTDNHTSVLGMRELVKTN 171 (815)
Q Consensus 107 ~~~~r~~la~~~g------~~~~~~~iv~t~g~t~al~~~~~al--------~~~~gd-vv~~~~~h~s~~~~~~~~~~~ 171 (815)
..++|+.++++++ +++++ |++|+|+++|+.+++.++ . ++|| |++..+.|+.+....+..+..
T Consensus 102 ~~~lr~aia~~~~~~~~~~~~~~~--iv~t~G~~~al~~~~~~l~~~~~~~~~-~~Gd~Vlv~~P~y~~~~~~~~~~g~~ 178 (427)
T 2hox_A 102 SFELEKTIKELHEVVGNAAAKDRY--IVFGVGVTQLIHGLVISLSPNMTATPD-APESKVVAHAPFYPVFREQTKYFDKK 178 (427)
T ss_dssp CHHHHHHHHHHHHHHTCBCCTTCE--EEEESHHHHHHHHHHHHHSCCTTTCTT-SCCEEEEECSSCCHHHHHHHHHSCBT
T ss_pred hHHHHHHHHHHHHHhCCcCCCCCE--EEEeCCHHHHHHHHHHHHhhccccccC-CCCCEEEEeCCCcccHHHHHHHcCCe
Confidence 5678889998886 56665 999999999999999999 5 8999 888888887766555443222
Q ss_pred ceEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccc
Q psy16512 172 QIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAAT 251 (815)
Q Consensus 172 g~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~ 251 (815)
.+. ..++++.+++++ .+++++|++++++||||.+++ + +++ ++..++|.++
T Consensus 179 -~~~----~~~d~~~l~~~~-------~~~~k~v~l~~p~NPtG~~~~-~----~l~-------------~~~~i~d~~~ 228 (427)
T 2hox_A 179 -GYV----WAGNAANYVNVS-------NPEQYIEMVTSPNNPEGLLRH-A----VIK-------------GCKSIYDMVY 228 (427)
T ss_dssp -TEE----EEEEGGGGTTCS-------CGGGEEEEEESSCTTTCCCCC-C----SST-------------TCEEEEECTT
T ss_pred -eee----ecCCHHHHHHhh-------cCCceEEEEcCCCCCcccccH-H----HHc-------------CCCEEEeecc
Confidence 221 123445555433 356899999999999999999 4 334 2467888776
Q ss_pred ccCCC-CCCCCCCCCcEEEEccccccccCCc--ceEEEEe-cccccccCcccccCceEEEEecCCcccccccCccccccC
Q psy16512 252 YCGSN-MLDLKQHQPDFISISFYKMFGYPTG--LGALIVK-QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFED 327 (815)
Q Consensus 252 ~~g~~-~~dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (815)
+.+.. ..++. .+.++++.|+||.|| ++| +||++++ +++++.+.... ....
T Consensus 229 ~~~~~s~~~~~-~~~~i~~~S~SK~~g-~~G~RiG~~~~~~~~l~~~l~~~~------------------------~~~~ 282 (427)
T 2hox_A 229 YWPHYTPIKYK-ADEDILLFTMSKFTG-HSGSRFGWALIKDESVYNNLLNYM------------------------TKNT 282 (427)
T ss_dssp CSTTTSCCCSC-BCCSEEEEEHHHHTS-CGGGCCEEEEECCHHHHHHHHHHH------------------------HHHT
T ss_pred cCCCCCccccC-CCceEEEEeChhcCC-CCCceEEEEEECCHHHHHHHHHHH------------------------HhcC
Confidence 53221 12222 467899999999999 668 8999995 67766553321 1111
Q ss_pred CCCChhHHHHHHHHHHHHHh--------hh---h-hHHHHHHHHHHHHHHHHhccccCCCCcEEE--cC-CCC---CC-C
Q psy16512 328 GTVNYLAIISLKYGFDTMEK--------KR---K-SFTNAFELSQYTYFYFKQLSYSNGQPLVEL--YH-DTD---YG-E 388 (815)
Q Consensus 328 gt~~~~~~~al~~al~~l~~--------~~---~-~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l--~~-~~~---~~-~ 388 (815)
.+.+.....++..+++.... .. . ..+++++.++++.+.|+++ +++.+ +. +.. .. .
T Consensus 283 ~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~~~~~~~~~~~ 356 (427)
T 2hox_A 283 EGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQS------DRFSYQELPQSEYCNYFRRM 356 (427)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTS------SSEECCCCCSCEEETTTTEE
T ss_pred CCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhC------cCcccccccccccccccccc
Confidence 23444555555555553211 00 1 1267777888888899877 56665 22 210 00 0
Q ss_pred CCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCc
Q psy16512 389 SKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPT 468 (815)
Q Consensus 389 ~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 468 (815)
....+.++++.++. +...+ +.+++.++||.+++|..|.. ..
T Consensus 357 ~p~~g~f~~~~~~~-~~~~~----~~~ll~~~gI~v~pg~~f~~----------------------------------~~ 397 (427)
T 2hox_A 357 RPPSPSYAWVKCEW-EEDKD----CYQTFQNGRINTQNGVGFEA----------------------------------SS 397 (427)
T ss_dssp ECCCCSEEEEEECS-GGGCS----HHHHHHHTTEECEEGGGGTS----------------------------------CT
T ss_pred CCCCceEEEEECCC-cHHHH----HHHHHHHCCEEEcCCCccCC----------------------------------CC
Confidence 01225677777764 22221 44556789999999865431 13
Q ss_pred eEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 469 GSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 469 g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
+++|||++. ++++++.+++.|.+++..
T Consensus 398 ~~~Ris~~~--~~e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 398 RYVRLSLIK--TQDDFDQLMYYLKDMVKA 424 (427)
T ss_dssp TEEEEECSS--CHHHHHHHHHHHHHHHTC
T ss_pred CEEEEEecC--CHHHHHHHHHHHHHHHhh
Confidence 789999984 889999999999997743
No 202
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.78 E-value=8.9e-17 Score=180.94 Aligned_cols=325 Identities=14% Similarity=0.094 Sum_probs=206.6
Q ss_pred hhhhhhhhc---c-c--ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTG---A-G--VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~---~-~--~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+ . . ..++.+.+++.+++.... +.+... .... ..++++++++++|. +. ++|++|++
T Consensus 64 G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~--~~~~~~-~~~~----~~~l~~~la~~~g~--~~--v~~~~sGs 132 (433)
T 1z7d_A 64 DKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLT--ICSRAF-FSVP----LGICERYLTNLLGY--DK--VLMMNTGA 132 (433)
T ss_dssp CCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCS--CCCTTS-EEHH----HHHHHHHHHHHHTC--SE--EEEESSHH
T ss_pred CCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCC--CccCCc-CCHH----HHHHHHHHHhhcCC--Ce--EEEeCCHH
Confidence 456777544 1 1 156888888887765422 222111 2223 67888999999984 44 99999999
Q ss_pred hhHHHHHhhhc--------cCCC-c-EEEecCCCcc-hhhHHHHhhcc-----------ceEEcCchhhhcchhhhhhhh
Q psy16512 135 SAIKTVSEYFE--------FNEG-S-FIYLTDNHTS-VLGMRELVKTN-----------QIYSFSVDDARNMLNEFKESQ 192 (815)
Q Consensus 135 ~al~~~~~al~--------~~~g-d-vv~~~~~h~s-~~~~~~~~~~~-----------g~v~~~~~~~~~~~~~~~~l~ 192 (815)
+|+.+++.++. ..+| + ||+....|+. ...+....... +...+.. .+++.++++++
T Consensus 133 eA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~---~d~~~le~~l~ 209 (433)
T 1z7d_A 133 EANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY---DDLEALEEELK 209 (433)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT---TCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC---CCHHHHHHHhC
Confidence 99999988753 1356 5 7777765543 33333332210 1111211 14445544331
Q ss_pred hhhhhcCCCccEEEEecccCCCcccc----ChHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC--C--CCCCC
Q psy16512 193 ENVENMRHSNSLFVYPAESNFSGTKY----PLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM--L--DLKQH 263 (815)
Q Consensus 193 ~~~~~~~~~t~lv~i~~~~n~tG~~~----~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~--~--dl~~~ 263 (815)
.+++++|+++.+++++|.+. ++++|.++|+ ++|+++|+|+++. ++... . +....
T Consensus 210 ------~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~-----------~~g~llI~DEv~~g~g~~g~~~~~~~~~~ 272 (433)
T 1z7d_A 210 ------DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICK-----------KYNVLFVADEVQTGLGRTGKLLCVHHYNV 272 (433)
T ss_dssp ------STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHH-----------HTTCEEEEECTTTTTTTTSSSSGGGGGTC
T ss_pred ------CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHH-----------HcCCEEEEecCccCCCcCCcchhhHhcCC
Confidence 35688999988888899876 5788888888 8999999999986 22111 1 11123
Q ss_pred CCcEEEEccccccccCCc---ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 264 QPDFISISFYKMFGYPTG---LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 264 ~~D~vv~S~~K~~g~p~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
.+|++ |++|+++ + | +|++++++++++.+.+... ....+.|..+.+++.+
T Consensus 273 ~~di~--t~sK~l~-~-G~~~~G~v~~~~~~~~~l~~~~~------------------------~~t~~~~~~~~aaa~a 324 (433)
T 1z7d_A 273 KPDVI--LLGKALS-G-GHYPISAVLANDDIMLVIKPGEH------------------------GSTYGGNPLAASICVE 324 (433)
T ss_dssp CCSEE--EECGGGG-T-TSSCCEEEEECHHHHTTCCTTCC------------------------CCTTTTCHHHHHHHHH
T ss_pred CCCEE--EECcccc-C-CCCCeEEEEECHHHHhhhccccc------------------------cccCCCCHHHHHHHHH
Confidence 57876 7789998 4 5 8999999887765543110 0111456677777778
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK 420 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~ 420 (815)
+++.+... ...++..++++++.+.|+++. .+.|.+..+ ...++++.+.+.... .+..++.+.|.++
T Consensus 325 al~~~~~~-~~~~~~~~~~~~l~~~L~~l~--~~~~~~~~~--------~~~g~~~~i~~~~~~---~~~~~~~~~l~~~ 390 (433)
T 1z7d_A 325 ALNVLINE-KLCENAEKLGGPFLENLKREL--KDSKIVRDV--------RGKGLLCAIEFKNEL---VNVLDICLKLKEN 390 (433)
T ss_dssp HHHHHHHT-THHHHHHHHHHHHHHHHHHHH--TTCTTEEEE--------EEETTEEEEEECTTT---CCHHHHHHHHHHT
T ss_pred HHHHHHhc-cHHHHHHHHHHHHHHHHHHHH--HhCCCeEEE--------EeeeeEEEEEEccCh---hHHHHHHHHHHHC
Confidence 88877652 223888899999999997751 011333222 123788888886431 1234577888889
Q ss_pred CcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 421 KIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 421 gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
||.++++. .+++|+++++..|++|+++++++|++++.+
T Consensus 391 Gv~v~~~~---------------------------------------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 428 (433)
T 1z7d_A 391 GLITRDVH---------------------------------------DKTIRLTPPLCITKEQLDECTEIIVKTVKF 428 (433)
T ss_dssp TEECCEET---------------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEecCC---------------------------------------CCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence 99987530 268999999999999999999999988653
No 203
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.77 E-value=2e-17 Score=193.70 Aligned_cols=306 Identities=14% Similarity=0.088 Sum_probs=202.8
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh-h--
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD-A-- 181 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~-~-- 181 (815)
+.++++.+|++||++. .+++++|++.|+.+++.++. ++|| |++...+|.|+......++... +++.+.+. .
T Consensus 197 i~eaE~~lA~~fGa~~---a~~v~nGts~An~~ai~al~-~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~~~~gi~ 272 (715)
T 3n75_A 197 HKEAEQYIARVFNADR---SYMVTNGTSTANKIVGMYSA-PAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGIL 272 (715)
T ss_dssp HHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHHC-CTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCBCTTCCB
T ss_pred HHHHHHHHHHHhCCCC---ceEECcHHHHHHHHHHHHhC-CCCCEEEECCCccHHHHHHHHHcCCEEEEEeccccccccc
Confidence 8899999999999964 36777887899999999998 9999 9999999999987655544333 44433221 1
Q ss_pred --h-----cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccC
Q psy16512 182 --R-----NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG 254 (815)
Q Consensus 182 --~-----~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g 254 (815)
+ +.+.++++|++. ...+.+++++++++ |++|.++|+++|.++|+ .++ +++|+||+.+
T Consensus 273 ~~i~~~~~d~e~Le~~l~~~--~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~-----------~~~--livDEAH~~~ 336 (715)
T 3n75_A 273 GGIPQSEFQHATIAKRVKET--PNATWPVHAVITNS-TYDGLLYNTDFIKKTLD-----------VKS--IHFDSAWVPY 336 (715)
T ss_dssp CCCCGGGGSHHHHHHHHHHS--TTCCSCSEEEEESS-CTTSEEECHHHHHHHCC-----------CSE--EEEECTTCTT
T ss_pred cCcccccCCHHHHHHHHhhC--cCccCceEEEEECC-CCCCccCCHHHHHHHhC-----------cCc--EEEccccccc
Confidence 1 566666655310 00112348999999 99999999999999998 664 7999999865
Q ss_pred C--CC----CCCCCC--CCcEE---EEccccccccCCcceEEEEeccccc-ccCcccccCceEEEEecCCcccccccCcc
Q psy16512 255 S--NM----LDLKQH--QPDFI---SISFYKMFGYPTGLGALIVKQKSAH-VLNKTFYGGGTVKISMANENFHIKKDGLF 322 (815)
Q Consensus 255 ~--~~----~dl~~~--~~D~v---v~S~~K~~g~p~G~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 322 (815)
. .+ ...-.. ++|++ +.|+||+++++++.|+++++++... .+.. ..
T Consensus 337 ~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~-----------------------~~ 393 (715)
T 3n75_A 337 TNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNE-----------------------AY 393 (715)
T ss_dssp GGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHH-----------------------HH
T ss_pred cccCCccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHH-----------------------HH
Confidence 3 11 111111 25765 8999999998888899999876321 1100 01
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHh-hhhhH-HHHHHHHHHHHHHHHhccccCCCCc--EEEcCCCCCCCC---------
Q psy16512 323 EKFEDGTVNYLAIISLKYGFDTMEK-KRKSF-TNAFELSQYTYFYFKQLSYSNGQPL--VELYHDTDYGES--------- 389 (815)
Q Consensus 323 ~~~~~gt~~~~~~~al~~al~~l~~-~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~--~~l~~~~~~~~~--------- 389 (815)
..+..++++++.++++.++++++.. .+... ++..++++++++.|+++.... ++ ++++.+......
T Consensus 394 ~~~~STSpsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (715)
T 3n75_A 394 MMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTES--DGWFFDVWQPDHIDTTECWPLRSDS 471 (715)
T ss_dssp HHTSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSCCCEESSCSCCCSCSCEECCTTC
T ss_pred HhhcCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhc--ccceeeccCcccccchhhhccCccc
Confidence 2355678999999999999998874 44444 889999999999998872100 01 455544310000
Q ss_pred -------------CcccceEEEEEecC--CCC----ccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHh
Q psy16512 390 -------------KYQGNIVNFNLLHK--DGT----YYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHF 450 (815)
Q Consensus 390 -------------~~~~~i~~f~~~~~--~~~----~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~ 450 (815)
...+.-+.+..++. ++. .+.-.++.+.|+++||.+-...
T Consensus 472 ~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d---------------------- 529 (715)
T 3n75_A 472 TWHGFKNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTG---------------------- 529 (715)
T ss_dssp CTTCCTTCCSSSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEE----------------------
T ss_pred ccccccccccCcccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecC----------------------
Confidence 00122234444332 121 2334467777877888764321
Q ss_pred hcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 451 QQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 451 ~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
...|=+-++..+|++++++|+++|.++-.
T Consensus 530 -----------------~~~vl~l~s~g~~~~~~~~L~~aL~~~~~ 558 (715)
T 3n75_A 530 -----------------PYNLLFLFSIGIDKTKALSLLRALTDFKR 558 (715)
T ss_dssp -----------------TTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred -----------------CCcEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 14455666666899999999999998643
No 204
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.76 E-value=2.3e-17 Score=185.81 Aligned_cols=343 Identities=10% Similarity=0.027 Sum_probs=212.1
Q ss_pred hhhhhhhhccc------ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGAG------VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~~------~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+.. ..++.+.+++.+.+....+.++ .+ .... ..+++++++++++.++++ |+||+|++
T Consensus 42 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~-~~~~----~~~l~~~la~~~~~~~~~--v~~~~gg~ 112 (433)
T 1zod_A 42 GRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFS--EM-LSRP----VVDLATRLANITPPGLDR--ALLLSTGA 112 (433)
T ss_dssp CCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCT--TC-CCHH----HHHHHHHHHHHSCTTCCE--EEEESCHH
T ss_pred CCEEEEcccchhccccCCCCHHHHHHHHHHHHhCccccc--cc-CCHH----HHHHHHHHHHhCCCCcCE--EEEeCchH
Confidence 34566653321 2368888888877754221111 11 1122 678888999999987765 99999999
Q ss_pred hhHHHHHhhhcc-CCCc-EEEecCCCc-chhhHHHHhh----------ccc--eEEcCc------h------hhhcchhh
Q psy16512 135 SAIKTVSEYFEF-NEGS-FIYLTDNHT-SVLGMRELVK----------TNQ--IYSFSV------D------DARNMLNE 187 (815)
Q Consensus 135 ~al~~~~~al~~-~~gd-vv~~~~~h~-s~~~~~~~~~----------~~g--~v~~~~------~------~~~~~~~~ 187 (815)
+|+..++.++.. ..++ ||+....|+ +......... ..+ .++++. + +..+++.+
T Consensus 113 ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l 192 (433)
T 1zod_A 113 ESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYA 192 (433)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHH
Confidence 999999886531 2344 777776544 3333222210 012 232221 0 11345555
Q ss_pred hhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC--C--
Q psy16512 188 FKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM--L-- 258 (815)
Q Consensus 188 ~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~--~-- 258 (815)
+++++ +...+++++|+++.++|+||.+.+ +++|.++|+ ++|+++|+|+++. ++... .
T Consensus 193 e~~l~---~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~-----------~~~~~li~DEv~~~~g~~g~~~~~ 258 (433)
T 1zod_A 193 FDLID---RQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCE-----------ARGMLLILDEAQTGVGRTGTMFAC 258 (433)
T ss_dssp HHHHH---HHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHH-----------HHTCEEEEECTTTTTTTTSSSSTH
T ss_pred HHHHH---hcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHH-----------HhCCEEEEeccccCCCcCchHhHH
Confidence 55442 111145778888777789998777 888888888 8999999999987 44221 1
Q ss_pred CCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHH
Q psy16512 259 DLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISL 338 (815)
Q Consensus 259 dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al 338 (815)
+.....+|++ |++|.|++.-.+|++++++++++.+.+.... +....+.|..+..++
T Consensus 259 ~~~~~~~di~--s~sK~~~~G~~ig~~~~~~~~~~~~~~~~~~----------------------~~~t~~~~~~~~~a~ 314 (433)
T 1zod_A 259 QRDGVTPDIL--TLSKTLGAGLPLAAIVTSAAIEERAHELGYL----------------------FYTTHVSDPLPAAVG 314 (433)
T ss_dssp HHHTCCCSEE--EECHHHHTTSSCEEEEECHHHHHHHHHTTCC----------------------CCCTTTTCHHHHHHH
T ss_pred hhcCCCCCEE--EecccccCCCCeeEEEEhHHHHHhhccCCCC----------------------CCCCCCcCHHHHHHH
Confidence 1112346764 7789998322389999998876655321000 001124467777777
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC-CC---ccCHHHHH
Q psy16512 339 KYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD-GT---YYGYSEVQ 414 (815)
Q Consensus 339 ~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~-~~---~~~~~~v~ 414 (815)
.++++.+... ...++.+++++++.+.|+++.. ..|.+..+. ..+.++.+.+.... .. ......+.
T Consensus 315 ~aal~~~~~~-~~~~~~~~~~~~l~~~l~~l~~--~~~~~~~~~--------~~g~~~~i~~~~~~~~~~~~~~~~~~~~ 383 (433)
T 1zod_A 315 LRVLDVVQRD-GLVARANVMGDRLRRGLLDLME--RFDCIGDVR--------GRGLLLGVEIVKDRRTKEPADGLGAKIT 383 (433)
T ss_dssp HHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHH--HCTTEEEEE--------EETTEEEEEEEEETTTTEECTTHHHHHH
T ss_pred HHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHH--hCCCeEEEE--------EEEEEEEEEEecCccccCCChHHHHHHH
Confidence 7888877652 2238888889999888876510 003333332 23678888876321 00 01134577
Q ss_pred HhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 415 NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 415 ~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
+.|.++||.+++|..+. ..+++|+++++..+++++++++++|+++
T Consensus 384 ~~l~~~Gv~v~~~~~~~-----------------------------------~~~~lRi~~~~~~t~~~i~~~l~~l~~~ 428 (433)
T 1zod_A 384 RECMNLGLSMNIVQLPG-----------------------------------MGGVFRIAPPLTVSEDEIDLGLSLLGQA 428 (433)
T ss_dssp HHHHHTTEECCEECCTT-----------------------------------SCCEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCeEeccCCCC-----------------------------------CCCEEEEECCcCCCHHHHHHHHHHHHHH
Confidence 77788999998763210 0378999999899999999999999987
Q ss_pred Hh
Q psy16512 495 FL 496 (815)
Q Consensus 495 ~~ 496 (815)
+.
T Consensus 429 l~ 430 (433)
T 1zod_A 429 IE 430 (433)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 205
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.76 E-value=3.7e-17 Score=185.18 Aligned_cols=335 Identities=12% Similarity=0.017 Sum_probs=214.8
Q ss_pred hhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhh
Q psy16512 63 CYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSA 136 (815)
Q Consensus 63 iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~a 136 (815)
.|+|..+. +..++.+.+++.+++......... ...... ..+++++++++++.+.+. |+|++|+++|
T Consensus 76 ~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~--~~~~~~----~~~L~e~la~~~~~~~~~--v~~~~sGseA 147 (457)
T 3tfu_A 76 EVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFG--GLTHEP----AARLAKLLVDITPAGLDT--VFFSDSGSVS 147 (457)
T ss_dssp EEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCSS--SEECHH----HHHHHHHHHHHSSTTEEE--EEEESSHHHH
T ss_pred EEEECCCcHhhhccCCCCHHHHHHHHHHHHhccCcccc--ccCCHH----HHHHHHHHHHhCCCCcCE--EEEeCcHHHH
Confidence 67776543 234688888888777642111111 112233 678999999999876665 9999999999
Q ss_pred HHHHHhhhccC------CCc--EEEecCCCcc-hhhHHHHhhc------------cc--eEEcCch--hhhcchhhhhhh
Q psy16512 137 IKTVSEYFEFN------EGS--FIYLTDNHTS-VLGMRELVKT------------NQ--IYSFSVD--DARNMLNEFKES 191 (815)
Q Consensus 137 l~~~~~al~~~------~gd--vv~~~~~h~s-~~~~~~~~~~------------~g--~v~~~~~--~~~~~~~~~~~l 191 (815)
+..++..+..- +|+ +|.....|.. .......... .+ .++.... ...+++.+++++
T Consensus 148 ~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l 227 (457)
T 3tfu_A 148 VEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQL 227 (457)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHH
Confidence 99998887521 554 6666655433 3222222110 01 2222111 113455555544
Q ss_pred hhhhhhcCCCccEEEEec-ccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC--C--CCC
Q psy16512 192 QENVENMRHSNSLFVYPA-ESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM--L--DLK 261 (815)
Q Consensus 192 ~~~~~~~~~~t~lv~i~~-~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~--~--dl~ 261 (815)
+ ...+++++|+++. ++|++|.+.| +++|.++|+ ++|+++|+|+++. +|... . +..
T Consensus 228 ~----~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~-----------~~gillI~DEv~~g~gr~G~~~a~~~~ 292 (457)
T 3tfu_A 228 A----QHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICR-----------RYEVLLIFDEIATGFGRTGALFAADHA 292 (457)
T ss_dssp H----HHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHH-----------HHTCEEEEECTTTTTTTTSSSSTHHHH
T ss_pred H----hCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEEcCccCCccccchhHhHhc
Confidence 3 1124688999999 9999999987 788888998 8999999999975 33211 1 111
Q ss_pred CCCCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 262 QHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 262 ~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
...+|++ |++|.+++. ..+|++++++++++.+.....+.. ......+.|.++.+++.+
T Consensus 293 ~~~pdii--t~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~-------------------~~~~t~~~n~~a~aaa~a 351 (457)
T 3tfu_A 293 GVSPDIM--CVGKALTGGYLSLAATLCTADVAHTISAGAAGAL-------------------MHGPTFMANPLACAVSVA 351 (457)
T ss_dssp TCCCSEE--EECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSC-------------------CCCCTTTTCHHHHHHHHH
T ss_pred CCCceEE--EEChhhhCCCcceEEEEEcHHHHHHhhccCCCce-------------------eEecCCCcCHHHHHHHHH
Confidence 2357877 778988843 148999999988765521000000 001112456777777778
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK 420 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~ 420 (815)
+++.+... ...++.+++.+++.+.|.++. ..|.+..+. ..+.++.+.+.... +..++.+.|.++
T Consensus 352 aL~~~~~~-~~~~~~~~~~~~l~~~L~~l~---~~~~v~~vr--------~~G~~~~i~l~~~~----~~~~~~~~l~~~ 415 (457)
T 3tfu_A 352 SVELLLGQ-DWRTRITELAAGLTAGLDTAR---ALPAVTDVR--------VCGAIGVIECDRPV----DLAVATPAALDR 415 (457)
T ss_dssp HHHHHHTS-CHHHHHHHHHHHHHHHHGGGG---GSTTEEEEE--------ECSSCEEEEESSCC----CHHHHHHHHHHT
T ss_pred HHHHHhhh-HHHHHHHHHHHHHHHHHHHHh---cCCCeeeee--------cCCeEEEEEECCcc----cHHHHHHHHHHC
Confidence 88876542 223888899999999998762 114444332 23678888876431 234688888888
Q ss_pred CcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 421 KIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 421 gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
||.+++. .+++|+++++..|++|+++++++|++++.+
T Consensus 416 Gv~v~~~----------------------------------------~~~lRi~p~~~~t~eei~~~l~~L~~~l~~ 452 (457)
T 3tfu_A 416 GVWLRPF----------------------------------------RNLVYAMPPYICTPAEITQITSAMVEVARL 452 (457)
T ss_dssp TEECCCB----------------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEec----------------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9998742 257999999888999999999999998764
No 206
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.75 E-value=1.3e-17 Score=188.76 Aligned_cols=333 Identities=13% Similarity=0.130 Sum_probs=207.0
Q ss_pred hhhhhhhhcc------cccchhhH-H-HHHH---HHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC-CCCCceeEE
Q psy16512 61 DICYLDYTGA------GVYSQSQM-N-QTIE---QLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN-TDSDHYSVI 128 (815)
Q Consensus 61 ~~iyLd~a~~------~~~p~~v~-~-al~~---~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g-~~~~~~~iv 128 (815)
+..|+|..+. +..++.+. + ++.+ ++.......+ .. .... ..++++.++++++ .+.++ |+
T Consensus 53 g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~~~--~~-~~~~----~~~la~~la~~~~~~~~~~--v~ 123 (449)
T 2cjg_A 53 GRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS--DV-YSVA----MARFVETFARVLGDPALPH--LF 123 (449)
T ss_dssp CCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCCTT--TC-CCHH----HHHHHHHHHHHHCCTTCCE--EE
T ss_pred CcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCc--cc-CCHH----HHHHHHHHHHhcCCCCCCE--EE
Confidence 4567775322 22467888 7 8877 5543211111 11 1222 6788889999997 44554 99
Q ss_pred ecCCchhhHHHHHhhhc-c-C-----------CCc-EEEecCCCcc-hhhHHHHhhc-------c-----c--eEEcCc-
Q psy16512 129 FTSGATSAIKTVSEYFE-F-N-----------EGS-FIYLTDNHTS-VLGMRELVKT-------N-----Q--IYSFSV- 178 (815)
Q Consensus 129 ~t~g~t~al~~~~~al~-~-~-----------~gd-vv~~~~~h~s-~~~~~~~~~~-------~-----g--~v~~~~- 178 (815)
|++|+++|+..++..+. + . +|+ ||+....|+. ...+...... . + .++.+.
T Consensus 124 ~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 203 (449)
T 2cjg_A 124 FVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRP 203 (449)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCT
T ss_pred EeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCc
Confidence 99999999999887542 1 1 266 7877765544 3332222211 1 1 222222
Q ss_pred --hh-------hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEE
Q psy16512 179 --DD-------ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFV 245 (815)
Q Consensus 179 --~~-------~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~v 245 (815)
+. ..+++.++++++ ...+++++|+++.++|++|.+.+ +++|.++|+ ++|+++
T Consensus 204 ~~~~~~~~~~~~~~~~~le~~i~----~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~-----------~~g~ll 268 (449)
T 2cjg_A 204 GLDEPAMAALEAEALRQARAAFE----TRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCD-----------EFDALL 268 (449)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHH----HSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHH-----------HTTCEE
T ss_pred hhhccccchhhHHHHHHHHHHHH----hcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHH-----------HCCcEE
Confidence 10 123333444332 11357899999988999998777 778888888 899999
Q ss_pred EEecccc-cCCCC--CC--CCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccC
Q psy16512 246 LLDAATY-CGSNM--LD--LKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDG 320 (815)
Q Consensus 246 ivD~a~~-~g~~~--~d--l~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~ 320 (815)
|+|++|. +|... .. .....+|++ |++|+| | +|++++++++++.+.+.+.+...
T Consensus 269 i~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l--~--iG~~~~~~~~~~~l~~~~~~~~~---------------- 326 (449)
T 2cjg_A 269 IFDEVQTGCGLTGTAWAYQQLDVAPDIV--AFGKKT--Q--VCGVMAGRRVDEVADNVFAVPSR---------------- 326 (449)
T ss_dssp EEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGG--S--SEEEEECGGGGGSTTCTTTSTTS----------------
T ss_pred EEeccccCCCccCcceeecccCCCceEE--EecCcc--c--EEEEEECHHHhhhhhhcccCCcc----------------
Confidence 9999987 43221 11 112357876 567988 4 79999998887665432211100
Q ss_pred ccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCc-EEEcCCCCCCCCCcccceEEEE
Q psy16512 321 LFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPL-VELYHDTDYGESKYQGNIVNFN 399 (815)
Q Consensus 321 ~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~-~~l~~~~~~~~~~~~~~i~~f~ 399 (815)
.....+.|..+..++.++++.+... ...++.+++++++.+.|+++.. +.|. +..+. ..+.++.+.
T Consensus 327 ---~~~t~~~n~~~~~aa~aal~~~~~~-~~~~~~~~~~~~l~~~L~~l~~--~~~~~~~~~~--------~~g~~~~~~ 392 (449)
T 2cjg_A 327 ---LNSTWGGNLTDMVRARRILEVIEAE-GLFERAVQHGKYLRARLDELAA--DFPAVVLDPR--------GRGLMCAFS 392 (449)
T ss_dssp ---SCCSSSSCHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHH--HSTTTSEEEE--------EETTEEEEE
T ss_pred ---cccCCCCCHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHh--hCCCceeeEe--------eccEEEEEE
Confidence 0112245677788888888877652 2238888999999999876510 0022 32221 236788887
Q ss_pred EecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCC
Q psy16512 400 LLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHAS 479 (815)
Q Consensus 400 ~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~ 479 (815)
+.... ...++.+.|.++||.++++. .+++|+++++.+
T Consensus 393 ~~~~~----~~~~~~~~l~~~Gv~v~~~g---------------------------------------~~~iRi~~~~~~ 429 (449)
T 2cjg_A 393 LPTTA----DRDELIRQLWQRAVIVLPAG---------------------------------------ADTVRFRPPLTV 429 (449)
T ss_dssp CSSHH----HHHHHHHHHHHTTEECEEET---------------------------------------TTEEEECCCTTC
T ss_pred ECChH----HHHHHHHHHHHCCeEEecCC---------------------------------------CCEEEEECCCCC
Confidence 65310 12347777778999987531 268999999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q psy16512 480 NWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 480 t~edi~~lv~~L~~~~~ 496 (815)
|++++++++++|++++.
T Consensus 430 t~e~i~~~l~~l~~~l~ 446 (449)
T 2cjg_A 430 STAEIDAAIAAVRSALP 446 (449)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999998764
No 207
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.75 E-value=1.2e-17 Score=185.40 Aligned_cols=285 Identities=14% Similarity=0.064 Sum_probs=182.1
Q ss_pred hhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEe--cCCchhhHHHHHhhhccCCCc-E
Q psy16512 75 QSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIF--TSGATSAIKTVSEYFEFNEGS-F 151 (815)
Q Consensus 75 ~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~--t~g~t~al~~~~~al~~~~gd-v 151 (815)
.++++++.+........++.+.+...+. ..+++++.+++++|++.. +++ ++|+++|+.+++.++. ++|| +
T Consensus 32 ~~vl~a~~~~~~~~~~~~~~~~~~y~~~---~~~~Le~~lA~l~g~e~a---lv~p~~~sGt~Ai~~al~all-~~GD~V 104 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHFHPSTGYGYDDE---GRDTLERVYATVFKTEAA---LVRPQIISGTHAISTVLFGIL-RPDDEL 104 (409)
T ss_dssp HHHHHHHHHTTCCGGGGCCCCTTCTTCH---HHHHHHHHHHHHHTCSEE---EEETTSCSHHHHHHHHHHHHC-CTTCEE
T ss_pred HHHHHHHHHhhhhhhccCCCcCCCCChh---HHHHHHHHHHHHhCCCcE---EEECCCccHHHHHHHHHHHhc-CCCCEE
Confidence 4566666554322122233333322222 267889999999998652 554 7888999999999997 9999 7
Q ss_pred EEec-CCCcchhhHH-------HHhhccc--e--EEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEec----ccCCCc
Q psy16512 152 IYLT-DNHTSVLGMR-------ELVKTNQ--I--YSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPA----ESNFSG 215 (815)
Q Consensus 152 v~~~-~~h~s~~~~~-------~~~~~~g--~--v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~----~~n~tG 215 (815)
|++. ..|..+.... ..+...| + ++.++++..+++.+++++ +++|++|++++ ++||||
T Consensus 105 l~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai-------~~~tklV~i~~s~g~p~nptg 177 (409)
T 3jzl_A 105 LYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKM-------TPKTKMIGIQRSRGYADRPSF 177 (409)
T ss_dssp EECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHC-------CTTEEEEEEECSCTTSSSCCC
T ss_pred EEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhc-------cCCCeEEEEECCCCCCCCCcC
Confidence 7776 6777665443 3344455 3 344445557777776644 46899999999 999999
Q ss_pred cccChHHHHHHhhccccccccccCC--CCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCC--cceEEEEeccc
Q psy16512 216 TKYPLSWCNTVHRNHVFKKHFKCSR--SNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPT--GLGALIVKQKS 291 (815)
Q Consensus 216 ~~~~l~~I~~l~~~~~~~~~~~~~~--~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~--G~G~l~~~~~~ 291 (815)
.+.|+++|.++|+ + +|+++++|++++.+....+....++|+++.|+||++|++. ..|+++.++++
T Consensus 178 ~v~~l~~I~~la~-----------~~~~~~~livD~a~~~~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~l 246 (409)
T 3jzl_A 178 TIEKIKEMIVFVK-----------NINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEAL 246 (409)
T ss_dssp CHHHHHHHHHHHH-----------HHCTTCEEEEECTTCTTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHH
T ss_pred ccccHHHHHHHHH-----------hhCCCCEEEEeCCcccccccCCccccCCeEEEECccccCCccCCceEEEEEeCHHH
Confidence 9999999999999 7 9999999999987763333335678999999999999432 14899999888
Q ss_pred ccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccc
Q psy16512 292 AHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSY 371 (815)
Q Consensus 292 ~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~ 371 (815)
++.++......+. ....|.. .....++..++..+. ..+++..+.+.++.+.|+++
T Consensus 247 i~~l~~~~~~~~~-------------------g~~~g~~-~~~~~~~l~gl~~~~---~r~~~~~~~a~~la~~L~~~-- 301 (409)
T 3jzl_A 247 VDLCGYRLTTPGI-------------------GREAGAS-LYSLLEMYQGFFLAP---HVTAQAIKGARFTAAMLAEF-- 301 (409)
T ss_dssp HHHHHHHHSCTTT-------------------GGGCCCC-TTCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHhccccc-------------------ccccccc-HHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHhC--
Confidence 7766432110000 0111111 111223334443332 23477788899999999988
Q ss_pred cCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCC
Q psy16512 372 SNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKK 421 (815)
Q Consensus 372 ~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~g 421 (815)
+++++.... ..++.-+++|.+.+. +. ...+.+.|....
T Consensus 302 -----g~~v~p~~~---~~~~~~i~~i~l~~~--~~--~~~~~~~L~~~~ 339 (409)
T 3jzl_A 302 -----GVEADPVWD---APRTDLIQSVSFHNK--EK--MVAFAQAIQAAS 339 (409)
T ss_dssp -----TCEEESCTT---SCCSSSCCEEECSCH--HH--HHHHHHHHHHTS
T ss_pred -----CCcccCCCC---CCCccEEEEEEeCCH--HH--HHHHHHHHHhcC
Confidence 456643221 123344888887532 11 123556666554
No 208
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.75 E-value=3.9e-16 Score=176.81 Aligned_cols=347 Identities=11% Similarity=0.071 Sum_probs=210.9
Q ss_pred hhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+. +..++.+.+++.+++....+ ......... ..+++++++++++.+.+ |+||+|++
T Consensus 48 g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~---~~~~~~~~~----~~~la~~l~~~~~~~~~---v~~~~ggs 117 (452)
T 3n5m_A 48 GKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSY---FPMSQSHEP----AIKLAEKLNEWLGGEYV---IFFSNSGS 117 (452)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCC---CCTTSEEHH----HHHHHHHHHHHHTSCEE---EEEESSHH
T ss_pred CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCC---cccccCCHH----HHHHHHHHHHhCCCCce---EEEeCchH
Confidence 3456665543 22368888888887754222 111122233 67899999999986543 99999999
Q ss_pred hhHHHHHhhhcc----C---CCc-EEEecCCCcchhhHHHHhhcc------------c--eEEcCchh------------
Q psy16512 135 SAIKTVSEYFEF----N---EGS-FIYLTDNHTSVLGMRELVKTN------------Q--IYSFSVDD------------ 180 (815)
Q Consensus 135 ~al~~~~~al~~----~---~gd-vv~~~~~h~s~~~~~~~~~~~------------g--~v~~~~~~------------ 180 (815)
+|+..++..+.. . +++ ||+....|+........+... + .++.....
T Consensus 118 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (452)
T 3n5m_A 118 EANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYD 197 (452)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGG
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHH
Confidence 999999988751 2 455 777776655433222211111 0 11110000
Q ss_pred hhcchhhhhhhhhhhhhcCCCccEEEEecc-cCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cC
Q psy16512 181 ARNMLNEFKESQENVENMRHSNSLFVYPAE-SNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CG 254 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~-~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g 254 (815)
..+++.++++++ ....+++++|+++.+ +| +|.+.| +++|.++|+ +||+++|+|+++. +|
T Consensus 198 ~~~~~~le~~l~---~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~-----------~~~~llI~DEv~~g~g 262 (452)
T 3n5m_A 198 VECVKEVDRVMT---WELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQ-----------KHGALLISDEVICGFG 262 (452)
T ss_dssp CHHHHHHHHHHH---HHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHH-----------HHTCEEEEECTTTTTT
T ss_pred HHHHHHHHHHHH---hcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHH-----------HcCCEEEEecchhCCC
Confidence 001344444332 111245788899888 89 999887 888889998 8999999999976 33
Q ss_pred CC--C--CCCCCCCCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCC
Q psy16512 255 SN--M--LDLKQHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT 329 (815)
Q Consensus 255 ~~--~--~dl~~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 329 (815)
.. . .+.....+|++ +++|.+++. -.+|++++++++++.+.+....... ......+
T Consensus 263 ~~g~~~~~~~~~~~~di~--t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~------------------~~~~t~~ 322 (452)
T 3n5m_A 263 RTGKAFGFMNYDVKPDII--TMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFF------------------RHINTFG 322 (452)
T ss_dssp TTSSSSGGGGTTCCCSEE--EECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSC------------------CCCCSST
T ss_pred cccccchhhhcCCCCCEE--eecccccCCCcceEEEEECHHHHHHHhhccCCCCc------------------cccCCCC
Confidence 21 1 12222346766 467988843 3479999999887766321000000 0011224
Q ss_pred CChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC--CCc
Q psy16512 330 VNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD--GTY 407 (815)
Q Consensus 330 ~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~--~~~ 407 (815)
.|.++++++.++++.+... ...++.+++.+++.+.|.++. ...|.+..+.+ .+.++.+.+.... ...
T Consensus 323 ~~~~~~aaa~aal~~~~~~-~~~~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~--------~g~~~~i~~~~~~~~~~~ 391 (452)
T 3n5m_A 323 GNPAACALALKNLEIIENE-NLIERSAQMGSLLLEQLKEEI--GEHPLVGDIRG--------KGLLVGIELVNDKETKEP 391 (452)
T ss_dssp TCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHH--TTCTTEEEEEE--------SSSCEEEEEEEETTTTEE
T ss_pred CCHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHH--hcCCCeEEEEE--------EEEEEEEEEecCCcccCC
Confidence 5667777777888876542 223777888888888776641 01144444322 3667777764321 111
Q ss_pred cC---HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHH
Q psy16512 408 YG---YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDV 484 (815)
Q Consensus 408 ~~---~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi 484 (815)
++ ...+.+.|.++||.++++..+.++ ..+++||++++..|++++
T Consensus 392 ~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~---------------------------------~~~~iRi~~~~~~t~e~i 438 (452)
T 3n5m_A 392 IDNDKIASVVNACKEKGLIIGRNGMTTAG---------------------------------YNNILTLAPPLVISSEEI 438 (452)
T ss_dssp CCHHHHHHHHHHHHHTTEECEECTTSSTT---------------------------------CCCEEEECCCTTCCHHHH
T ss_pred CCHHHHHHHHHHHHHCCcEEeecCcccCC---------------------------------CCCEEEEECCCCCCHHHH
Confidence 11 134777788899999886543211 137899999999999999
Q ss_pred HHHHHHHHHHHh
Q psy16512 485 KYFLSFLNQYFL 496 (815)
Q Consensus 485 ~~lv~~L~~~~~ 496 (815)
++++++|++++.
T Consensus 439 ~~~l~~l~~~l~ 450 (452)
T 3n5m_A 439 AFVIGTLKTAME 450 (452)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 209
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.74 E-value=7.8e-17 Score=181.52 Aligned_cols=332 Identities=11% Similarity=0.058 Sum_probs=204.4
Q ss_pred chhhhhhhhccc------ccchhhHHHHHHHHhhcc-ccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCC
Q psy16512 60 KDICYLDYTGAG------VYSQSQMNQTIEQLKENI-FSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSG 132 (815)
Q Consensus 60 ~~~iyLd~a~~~------~~p~~v~~al~~~l~~~~-~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g 132 (815)
++..|+|..+.. ..++.+.+++.+++.... +..|+ .. ..+++++++++++ +++. ++|++|
T Consensus 53 ~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~------~~----~~~l~~~la~~~~-~~~~--v~~~~s 119 (434)
T 3l44_A 53 DGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLYGTPT------AL----EVKFAKMLKEAMP-ALDK--VRFVNS 119 (434)
T ss_dssp TCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSCCSSCC------HH----HHHHHHHHHHHCT-TCSE--EEEESS
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcCCCCCC------HH----HHHHHHHHHHhCC-CCCE--EEEeCc
Confidence 345677776543 247888888888775421 11221 22 6678889999987 4555 999999
Q ss_pred chhhHHHHHhhhcc-CCCc-EEEecCCCcchhhHHHHhhccc-------------------eEEcCchhhhcchhhhhhh
Q psy16512 133 ATSAIKTVSEYFEF-NEGS-FIYLTDNHTSVLGMRELVKTNQ-------------------IYSFSVDDARNMLNEFKES 191 (815)
Q Consensus 133 ~t~al~~~~~al~~-~~gd-vv~~~~~h~s~~~~~~~~~~~g-------------------~v~~~~~~~~~~~~~~~~l 191 (815)
+|+|+..++..+.. .+++ +|+....|.........+...+ .+.+.. .+++.+++++
T Consensus 120 Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~le~~l 196 (434)
T 3l44_A 120 GTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPF---NNVETLKEAL 196 (434)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECT---TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCc---ccHHHHHHHH
Confidence 99999999987652 2455 7777766544322111111111 011110 1444555443
Q ss_pred hhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEeccccc---CCCC-CCCCCC
Q psy16512 192 QENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC---GSNM-LDLKQH 263 (815)
Q Consensus 192 ~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~---g~~~-~dl~~~ 263 (815)
+ ...+++++|+++.++|++|.+.| +++|.++|+ +||+++|+|+++.. |... .+....
T Consensus 197 ~----~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~-----------~~~illI~DEv~~g~~~g~~~~~~~~~~ 261 (434)
T 3l44_A 197 D----KWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVH-----------EAGALVIYDEVITAFRFMYGGAQDLLGV 261 (434)
T ss_dssp H----HHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHH-----------TTTCEEEEECTTTTTTSSSSCHHHHHTC
T ss_pred H----hCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEeccccceeccccHHHHHcCC
Confidence 2 11245788999888889999988 889999999 99999999999862 1100 011123
Q ss_pred CCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHH
Q psy16512 264 QPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFD 343 (815)
Q Consensus 264 ~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~ 343 (815)
.+|++ |++|.++++-.+|++++++++++.+.+.-. . ......+.|..+.+++.++++
T Consensus 262 ~~di~--t~sK~~~~G~~iG~~~~~~~i~~~~~~~~~---~------------------~~~~t~~~~~~a~aaa~aal~ 318 (434)
T 3l44_A 262 TPDLT--ALGKVIGGGLPIGAYGGKKEIMEQVAPLGP---A------------------YQAGTMAGNPASMASGIACLE 318 (434)
T ss_dssp CCSEE--EEEGGGGTTSSCEEEEECHHHHTTBTTTSS---B------------------CCCCTTTTCHHHHHHHHHHHH
T ss_pred CCCee--ehhhhhcCCcCeeeEEEcHHHHHhhccCCC---c------------------ccCCCCCcCHHHHHHHHHHHH
Confidence 46754 677988843348999999888766543100 0 011123556777777777887
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC---------ccCHHHHH
Q psy16512 344 TMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT---------YYGYSEVQ 414 (815)
Q Consensus 344 ~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~---------~~~~~~v~ 414 (815)
.+.. ....++.+++++++.+.|.++.... +.+... ...+.++.+.+...... ......+.
T Consensus 319 ~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~--~~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (434)
T 3l44_A 319 VLQQ-EGLYEKLDELGATLEKGILEQAAKH--NIDITL--------NRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFF 387 (434)
T ss_dssp HHTS-TTHHHHHHHHHHHHHHHHHHHHHHT--TCCEEE--------EEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHH
T ss_pred HHHc-ccHHHHHHHHHHHHHHHHHHHHHhC--CCCEEE--------EeeccEEEEEEecCcccchhhccccCHHHHHHHH
Confidence 7654 2223778888888888887641000 111111 12377888887532210 00123467
Q ss_pred HhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 415 NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 415 ~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
+.|.++||.++++. .+.+|+++ ..|++|+++++++|+++
T Consensus 388 ~~l~~~Gv~v~~~~---------------------------------------~~~~rl~~--~~t~e~i~~~l~~l~~~ 426 (434)
T 3l44_A 388 KLMLQEGVNLAPSK---------------------------------------YEAWFLTT--EHTKEDIEYTIEAVGRA 426 (434)
T ss_dssp HHHHHTTEECCSST---------------------------------------TCCEECCT--TCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCeEEeecC---------------------------------------CCcEEEec--ccCHHHHHHHHHHHHHH
Confidence 77888999987652 14588864 57999999999999998
Q ss_pred Hhh
Q psy16512 495 FLQ 497 (815)
Q Consensus 495 ~~~ 497 (815)
+.+
T Consensus 427 l~~ 429 (434)
T 3l44_A 427 FAA 429 (434)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 210
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.74 E-value=1.4e-17 Score=185.54 Aligned_cols=271 Identities=13% Similarity=0.002 Sum_probs=175.2
Q ss_pred hhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEe--cCCchhhHHHHHhhhccCCCc-E
Q psy16512 75 QSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIF--TSGATSAIKTVSEYFEFNEGS-F 151 (815)
Q Consensus 75 ~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~--t~g~t~al~~~~~al~~~~gd-v 151 (815)
+++++++.+........++.+.+...+. ..+++++.+++++|++.. +++ ++|+++|+.+++.++. ++|| |
T Consensus 46 ~~Vl~A~~~~~~~~~~~~~~~gy~y~~~---~~~~Le~~lA~l~g~e~a---lv~p~~~sGt~Ai~~al~all-~pGD~V 118 (427)
T 3i16_A 46 LKVLNAFQEERISEAHFTNSSGYGYGDI---GRDSLDAVYARVFNTESA---LVRPHFVNGTHALGAALFGNL-RPGNTM 118 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCTTCH---HHHHHHHHHHHHHTCSEE---EEETTCCSHHHHHHHHHHHHC-CTTCEE
T ss_pred HHHHHHHHHhchhHHhcCCCCCCCCCHH---HHHHHHHHHHHHhCCcce---EEeCCCccHHHHHHHHHHHHh-CCCCEE
Confidence 4566666553222122223333322222 267888999999998653 564 7888999999999998 9999 7
Q ss_pred EEec-CCCcchhhHH--------HHhhccc--e--EEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEec----ccCCC
Q psy16512 152 IYLT-DNHTSVLGMR--------ELVKTNQ--I--YSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPA----ESNFS 214 (815)
Q Consensus 152 v~~~-~~h~s~~~~~--------~~~~~~g--~--v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~----~~n~t 214 (815)
|++. ..|+...... ..+...| + ++.+.++..+++.++++++ . .++|++|++++ ++||+
T Consensus 119 l~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~----~-~~~tklV~i~~s~~~p~npt 193 (427)
T 3i16_A 119 LSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLK----E-DESITLVHIQRSTGYGWRRA 193 (427)
T ss_dssp EESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHH----T-CTTEEEEEEECSCCSSSSCC
T ss_pred EEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhh----C-CCCCEEEEEEcCCCCCCCCc
Confidence 7776 6777665444 3444455 3 3444555677777776442 0 15799999999 99999
Q ss_pred ccccChHHHHHHhhccccccccccCC--CCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccC--CcceEEEEecc
Q psy16512 215 GTKYPLSWCNTVHRNHVFKKHFKCSR--SNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYP--TGLGALIVKQK 290 (815)
Q Consensus 215 G~~~~l~~I~~l~~~~~~~~~~~~~~--~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p--~G~G~l~~~~~ 290 (815)
|.+.|+++|.++|+ + +|+++++|++++.+....+....++|+++.|+||++|++ ...|+++.+++
T Consensus 194 g~i~dl~~i~~la~-----------~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~ 262 (427)
T 3i16_A 194 LLIEDIKSIVDCVK-----------NIRKDIICFVDNCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKD 262 (427)
T ss_dssp CCHHHHHHHHHHHH-----------HHCTTSEEEEECTTTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHH
T ss_pred ccHHHHHHHHHHHH-----------HhCCCCEEEEECCCccccccCCccccCCeEEEecCcccCCCCCCceEEEEEECHH
Confidence 99999999999999 7 999999999998776323333457899999999999942 12499999988
Q ss_pred cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc
Q psy16512 291 SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLS 370 (815)
Q Consensus 291 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~ 370 (815)
+++.++......+. .... .+.+.....+..++..+ ...+++..+.+.++.+.|+++
T Consensus 263 li~~l~~~~~~~~~-------------------g~~~-~~~~~~a~~~l~gl~~~---~~r~~~~~~~a~~la~~L~~~- 318 (427)
T 3i16_A 263 CIEKTSYRLTVPGI-------------------GGEC-GSTFGVVRSMYQGLFLA---PHISMEALKGAILCSRIMELA- 318 (427)
T ss_dssp HHHHHHHHHSCTTT-------------------GGGC-CCCTTCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhcccCcc-------------------CccC-CccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhC-
Confidence 87766432110000 0000 11111122233344333 223477888889999999988
Q ss_pred ccCCCCcEEEcCCCCCCCCCcccceEEEEEe
Q psy16512 371 YSNGQPLVELYHDTDYGESKYQGNIVNFNLL 401 (815)
Q Consensus 371 ~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~ 401 (815)
+++++.... ...+.-+++|.+.
T Consensus 319 ------g~~V~p~~~---~~~~~~i~~i~l~ 340 (427)
T 3i16_A 319 ------GFEVMPKYD---EKRSDIIQSIKFN 340 (427)
T ss_dssp ------TCEEESCTT---SCCSSSCEEEECS
T ss_pred ------CCeecCCCC---CCCccEEEEEEEC
Confidence 446643211 1223348888885
No 211
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.74 E-value=5.6e-16 Score=175.90 Aligned_cols=348 Identities=12% Similarity=0.019 Sum_probs=207.0
Q ss_pred hhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+. +..++.+.+++.+++......... ....... ..++.++++++++.+.+. |+||+|++
T Consensus 50 G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~-~~~~~~~----~~~la~~l~~~~~~~~~~--v~~~~gGs 122 (460)
T 3gju_A 50 GRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAY-VGHGTEA----SITLAKMIIDRAPKGMSR--VYFGLSGS 122 (460)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCC-TTCCCHH----HHHHHHHHHHHSCTTEEE--EEEESSHH
T ss_pred CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccc-cccCCHH----HHHHHHHHHhhCCCCcCE--EEEeCchH
Confidence 3456665433 233688888887777643211111 1111223 678889999998776665 99999999
Q ss_pred hhHHHHHhhhcc-------CCCc-EEEecCCCcchh-hHHHHhhc---------c--c--eEEcCchh-----hh-----
Q psy16512 135 SAIKTVSEYFEF-------NEGS-FIYLTDNHTSVL-GMRELVKT---------N--Q--IYSFSVDD-----AR----- 182 (815)
Q Consensus 135 ~al~~~~~al~~-------~~gd-vv~~~~~h~s~~-~~~~~~~~---------~--g--~v~~~~~~-----~~----- 182 (815)
+|+..++.++.. .+++ ||+....|+... ........ . + .++..... ..
T Consensus 123 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 202 (460)
T 3gju_A 123 DANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQF 202 (460)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHH
Confidence 999999988752 1234 777666654433 22221110 0 1 22211100 01
Q ss_pred ---cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cC
Q psy16512 183 ---NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CG 254 (815)
Q Consensus 183 ---~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g 254 (815)
+++.++++++ +...+++++|+++.++|++|.+.+ +++|.++|+ +||+++|+|+++. +|
T Consensus 203 ~~~~~~~le~~i~---~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~-----------~~~~llI~DEv~~g~g 268 (460)
T 3gju_A 203 SQHCADKLEEMIL---AEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLK-----------KYDVLLVADEVVTGFG 268 (460)
T ss_dssp HHHHHHHHHHHHH---HHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHH-----------HTTCEEEEECTTTTTT
T ss_pred HHHHHHHHHHHHH---hcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEeccccCCC
Confidence 1344444332 111245789999999999999776 788888898 8999999999976 43
Q ss_pred CCC--C--CCCCCCCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCC
Q psy16512 255 SNM--L--DLKQHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT 329 (815)
Q Consensus 255 ~~~--~--dl~~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 329 (815)
... . +.....+|+++ ++|.+++. -.+|++++++++++.+......... .......+
T Consensus 269 r~g~~~~~~~~~~~pdi~t--~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~-----------------~~~~~t~~ 329 (460)
T 3gju_A 269 RLGTMFGSDHYGIKPDLIT--IAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGS-----------------LGHGWTYS 329 (460)
T ss_dssp TTSSSCHHHHHTCCCSEEE--ECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCS-----------------CSCCCTTT
T ss_pred cccccchHhhcCCCCCeee--eehhhcCCCCCeEEEEECHHHHHHHhcccccccc-----------------cccCCCCC
Confidence 211 1 11123467764 66988842 2379999999887665211000000 00011224
Q ss_pred CChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC--c
Q psy16512 330 VNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT--Y 407 (815)
Q Consensus 330 ~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~--~ 407 (815)
.|.++.+++.++++.+... ...++.+++.+++++.|.+.. ...|.+..+. ..+.++.+.+...... .
T Consensus 330 ~~~~~~aaa~aal~~~~~~-~~~~~~~~~~~~~~~~l~~~l--~~~~~~~~~~--------~~g~~~~~~~~~~~~~~~~ 398 (460)
T 3gju_A 330 AHPICVAAGVANLELIDEM-DLVTNAGETGAYFRAELAKAV--GGHKNVGEVR--------GDGMLAAVEFVADKDDRVF 398 (460)
T ss_dssp TCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHH--TTSTTEEEEE--------EETTEEEEEECSBTTTTBC
T ss_pred CCHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHH--hcCCCeEEEe--------eeeEEEEEEEccCcccccc
Confidence 5667777777888876542 122566666666666663320 0114454442 2367888877642211 0
Q ss_pred c-----CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHH
Q psy16512 408 Y-----GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWD 482 (815)
Q Consensus 408 ~-----~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~e 482 (815)
+ ....+.+.|.++||.++++. ..+++||++++..|++
T Consensus 399 ~~~~~~~~~~~~~~l~~~Gv~v~~~~--------------------------------------~~~~iRi~~~~~~t~e 440 (460)
T 3gju_A 399 FDASQKIGPQVATALAASGVIGRAMP--------------------------------------QGDILGFAPPLCLTRE 440 (460)
T ss_dssp CCGGGCHHHHHHHHHHHTTEECEECS--------------------------------------SSCEEEECCCTTCCHH
T ss_pred ccchHHHHHHHHHHHHHCCeEEecCC--------------------------------------CCCEEEEECCCCCCHH
Confidence 0 02356777888999987642 0378999999889999
Q ss_pred HHHHHHHHHHHHHhh
Q psy16512 483 DVKYFLSFLNQYFLQ 497 (815)
Q Consensus 483 di~~lv~~L~~~~~~ 497 (815)
++++++++|++++.+
T Consensus 441 ~i~~~l~~l~~~l~~ 455 (460)
T 3gju_A 441 QADIVVSKTADAVKS 455 (460)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998754
No 212
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.73 E-value=3.1e-17 Score=183.21 Aligned_cols=283 Identities=13% Similarity=0.066 Sum_probs=176.3
Q ss_pred HHHHHHHHHhHc-CCC-----CCceeE--EecCCchhhHHHH---HhhhccCCCc-EEEecCCCcchhhHHHHhhccc-e
Q psy16512 107 IDQMRTKILQYF-NTD-----SDHYSV--IFTSGATSAIKTV---SEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-I 173 (815)
Q Consensus 107 ~~~~r~~la~~~-g~~-----~~~~~i--v~t~g~t~al~~~---~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~ 173 (815)
..++|+.+++++ |.. +++ | ..|.++++|+.++ +.++. ++|| |++..+.|+++....+..+... .
T Consensus 81 ~~~lr~~ia~~~~~~~~~~~~~~~--i~~~~~~~g~ga~~~~~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~ 157 (409)
T 4eu1_A 81 IASFVEEAQKLCFGPTCAALRDGR--IASCQTLGGTGALRIGGDLLNRFV-ANCNRIYGPDVGYPNHESIFAKAGMELTP 157 (409)
T ss_dssp CHHHHHHHHHHHHCSSCHHHHTTC--EEEEEESHHHHHHHHHHHHGGGTS-SSCCEEEEESSCCTHHHHHHHHTTCEEEE
T ss_pred cHHHHHHHHHHHcCCCchhhccCc--eeeeecccchHHHHHHHHHHHHhc-CCCCEEEEeCCCcHhHHHHHHHcCCeEEE
Confidence 578999999976 665 455 6 4488999998765 44454 7888 8888888887766555443332 4
Q ss_pred EEcC--chhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHH---HHHHhhccccccccccCCCCeEEEEe
Q psy16512 174 YSFS--VDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSW---CNTVHRNHVFKKHFKCSRSNCFVLLD 248 (815)
Q Consensus 174 v~~~--~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~---I~~l~~~~~~~~~~~~~~~gi~vivD 248 (815)
+++. .+..++++.++++++ ...++++++++++++||||.+++.++ |.++|+ ++|+++|+|
T Consensus 158 ~~~~~~~~~~~d~~~l~~~l~----~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~-----------~~~~~li~D 222 (409)
T 4eu1_A 158 YSYYDPATKGLNLAGMLECLD----KAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIK-----------RRNHIPFVD 222 (409)
T ss_dssp ECCEETTTTEECHHHHHHHHH----HSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHH-----------HTTCEEEEE
T ss_pred EEeecCcCCcCcHHHHHHHHH----hCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHH-----------hCCcEEEEe
Confidence 4442 234567777776543 11235678888999999999999777 555566 899999999
Q ss_pred cccccCCC-C-----C---CC-CCCCCcEEEEccccccccCCc--ceEE--EEec-c----cccccCcccccCceEEEEe
Q psy16512 249 AATYCGSN-M-----L---DL-KQHQPDFISISFYKMFGYPTG--LGAL--IVKQ-K----SAHVLNKTFYGGGTVKISM 309 (815)
Q Consensus 249 ~a~~~g~~-~-----~---dl-~~~~~D~vv~S~~K~~g~p~G--~G~l--~~~~-~----~~~~l~~~~~g~~~~~~~~ 309 (815)
+++..... . . .+ ......+++.|++|.|| ++| +||+ ++.+ + +.+.++...
T Consensus 223 e~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~riG~~~~v~~~~~~~~~l~~~~~~~~---------- 291 (409)
T 4eu1_A 223 MAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFG-LYGHRCGALHISTASAEEAKRLVSQLALLI---------- 291 (409)
T ss_dssp ESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSS-CGGGCCEEEEEECSSHHHHHHHHHHHHHHH----------
T ss_pred ccccccccCCcccchHHHHHHHhhCCcEEEEecCccccc-CccCCceEEEEEeCCHHHHHHHHHHHHHHH----------
Confidence 99664321 1 0 01 11234478889999999 557 7997 5544 4 333221110
Q ss_pred cCCcccccccCccccccCCCCChhHHHHHHHHHHHH-------HhhhhhHHHHHHHHHHHHHHHHhccccCCCCc-EEEc
Q psy16512 310 ANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM-------EKKRKSFTNAFELSQYTYFYFKQLSYSNGQPL-VELY 381 (815)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l-------~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~-~~l~ 381 (815)
+....+++.....++..+++.. .......++.+++++++.+.|+++. .|+ +++.
T Consensus 292 --------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~ 353 (409)
T 4eu1_A 292 --------------RPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACG----SVHDWSHI 353 (409)
T ss_dssp --------------HHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----CCSCCHHH
T ss_pred --------------hhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCccee
Confidence 0111244556666665666531 1121122788888999999998761 011 4444
Q ss_pred CCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCccc
Q psy16512 382 HDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKD 461 (815)
Q Consensus 382 ~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~ 461 (815)
.+. ++++.+ .+. +...+.++++++||.+.+|
T Consensus 354 ~~~--------~~~~~~--~~~-----~~~~~~~ll~~~gv~v~p~---------------------------------- 384 (409)
T 4eu1_A 354 ERQ--------VGMMAY--TGL-----TREQVELLRSEYHIYMTLN---------------------------------- 384 (409)
T ss_dssp HHS--------CSSEEE--CCC-----CHHHHHHHHHHHCEECCTT----------------------------------
T ss_pred cCC--------ceEEEE--eCC-----CHHHHHHHHHcCCEEEcCC----------------------------------
Confidence 332 344333 121 1223556667889998642
Q ss_pred ccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 462 IIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 462 ~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.|++++.. +++++++++++|++++
T Consensus 385 ---------~Ri~~~~~-~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 385 ---------GRAAVSGL-NSTNVEYVSQAIHNVT 408 (409)
T ss_dssp ---------CEEEGGGC-CTTTHHHHHHHHHHHH
T ss_pred ---------CEEEEEec-CHhhHHHHHHHHHHHh
Confidence 37888765 4567999999999865
No 213
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.72 E-value=6.1e-16 Score=175.51 Aligned_cols=338 Identities=12% Similarity=0.046 Sum_probs=209.5
Q ss_pred hhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+. +..++.+.+++.+++....+.++.. ...... ..++.++++++++.+.+. |+||+|++
T Consensus 49 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~-~~~~~~----~~~la~~l~~~~~~~~~~--v~~~~ggs 121 (459)
T 4a6r_A 49 GNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFF-KTTHPA----VVELSSLLAEVTPAGFDR--VFYTNSGS 121 (459)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTS-SSCCHH----HHHHHHHHHHHSCTTCCE--EEEESSHH
T ss_pred CCEEEECCCchhcccCCCCCHHHHHHHHHHHHhcccccccc-ccCCHH----HHHHHHHHHHhCCCCCCE--EEEeCchH
Confidence 3456776543 2236888888888776432111111 112233 678899999999877765 99999999
Q ss_pred hhHHHHHhhhcc-------CCCc-EEEecCCCcchhhHHHHhhcc------------c--eEEcCchhh----hc-----
Q psy16512 135 SAIKTVSEYFEF-------NEGS-FIYLTDNHTSVLGMRELVKTN------------Q--IYSFSVDDA----RN----- 183 (815)
Q Consensus 135 ~al~~~~~al~~-------~~gd-vv~~~~~h~s~~~~~~~~~~~------------g--~v~~~~~~~----~~----- 183 (815)
+|+..++..+.. .+++ ||+....|+........+... + .+++..... .+
T Consensus 122 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 201 (459)
T 4a6r_A 122 ESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFG 201 (459)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcccCHHHHH
Confidence 999999988862 1345 777776655433222222111 1 222111000 01
Q ss_pred ---chhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCC
Q psy16512 184 ---MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGS 255 (815)
Q Consensus 184 ---~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~ 255 (815)
++.++++++ +...+++++|+++.+++++|.+.+ +++|.++|+ ++|+++|+|+++. +|.
T Consensus 202 ~~~~~~le~~i~---~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~-----------~~~~llI~DEv~~g~gr 267 (459)
T 4a6r_A 202 VVAARWLEEKIL---EIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICR-----------KYDVLLVADEVICGFGR 267 (459)
T ss_dssp HHHHHHHHHHHH---HHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHH-----------HTTCEEEEECTTTTTTT
T ss_pred HHHHHHHHHHHH---HcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEeccccCCCc
Confidence 344444332 111135788888888888898887 888999998 8999999999976 332
Q ss_pred CC--C--CCCCCCCcEEEEccccccccC-CcceEEEEecccccccC---cccccCceEEEEecCCcccccccCccccccC
Q psy16512 256 NM--L--DLKQHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLN---KTFYGGGTVKISMANENFHIKKDGLFEKFED 327 (815)
Q Consensus 256 ~~--~--dl~~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (815)
.. . +.....+|+++ ++|.+++. -.+|++++++++++.+. +...+ ..
T Consensus 268 ~G~~~~~~~~~~~pdi~t--~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~------------------------~t 321 (459)
T 4a6r_A 268 TGEWFGHQHFGFQPDLFT--AAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHG------------------------FT 321 (459)
T ss_dssp TSSSSHHHHHTCCCSEEE--ECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHH------------------------HH
T ss_pred ccccchHhhcCCCCCeee--hhhhhcCCCCCccceeeCHHHHHHhhcCCCcccC------------------------CC
Confidence 11 1 11123578765 56988743 24799999988876553 11111 11
Q ss_pred CCCChhHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHH-HhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC
Q psy16512 328 GTVNYLAIISLKYGFDTMEKKRKSFTNAF-ELSQYTYFYF-KQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG 405 (815)
Q Consensus 328 gt~~~~~~~al~~al~~l~~~~~~~~~~~-~l~~~l~~~L-~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~ 405 (815)
.+.|.++.+++.++++.+... ...++.+ ++.+++.+.| +.+. ..|.+..+. ..+.++.+.+.....
T Consensus 322 ~~~~~~~~aaa~aal~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~~~~--------~~g~~~~~~~~~~~~ 389 (459)
T 4a6r_A 322 YSGHPVCAAVAHANVAALRDE-GIVQRVKDDIGPYMQKRWRETFS---RFEHVDDVR--------GVGMVQAFTLVKNKA 389 (459)
T ss_dssp HCSCHHHHHHHHHHHHHHHHT-CHHHHHHHTHHHHHHHHHHHHHT---TCTTEEEEE--------EETTEEEEEECSBTT
T ss_pred CCCCHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHh---cCCCeEEEE--------EEEEEEEEEEecCcc
Confidence 245667777777788776542 1236667 7777777777 4441 114454442 236788888764221
Q ss_pred C--cc-----CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC
Q psy16512 406 T--YY-----GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA 478 (815)
Q Consensus 406 ~--~~-----~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~ 478 (815)
. .+ ....+.+.|.++||.++++ .+++||++++.
T Consensus 390 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----------------------------------------g~~iRi~~~~~ 429 (459)
T 4a6r_A 390 KRELFPDFGEIGTLCRDIFFRNNLIMRAC----------------------------------------GDHIVSAPPLV 429 (459)
T ss_dssp TTBCCSSTTHHHHHHHHHHHHTTEECEEE----------------------------------------TTEEEECCCTT
T ss_pred ccccccchHHHHHHHHHHHHHCCeEEecC----------------------------------------CCEEEEECCCC
Confidence 1 00 0235677788889998753 15799999999
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q psy16512 479 SNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 479 ~t~edi~~lv~~L~~~~~~ 497 (815)
.|++++++++++|++++.+
T Consensus 430 ~t~e~i~~~l~~l~~~l~~ 448 (459)
T 4a6r_A 430 MTRAEVDEMLAVAERCLEE 448 (459)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998754
No 214
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.72 E-value=8e-16 Score=174.01 Aligned_cols=343 Identities=13% Similarity=0.066 Sum_probs=204.5
Q ss_pred hhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+. +..++.+.+++.+++....+..+. ...... ..++.++++++++...+. |+||+|++
T Consensus 43 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~--~~~~~~----~~~la~~l~~~~~~~~~~--v~~~~sGs 114 (448)
T 3dod_A 43 GKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLL--GMTNVP----ATQLAETLIDISPKKLTR--VFYSDSGA 114 (448)
T ss_dssp SCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCS--SSEEHH----HHHHHHHHHHHSCTTEEE--EEEESSHH
T ss_pred CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcccc--ccCCHH----HHHHHHHHHHhCCCCCCE--EEEeCchH
Confidence 3456665542 234688888888877543221111 112233 678889999999766555 99999999
Q ss_pred hhHHHHHhhhccC---CC----c-EEEecCCCcchh-hHHHHhhcc-----------c--eEEcCch-----------hh
Q psy16512 135 SAIKTVSEYFEFN---EG----S-FIYLTDNHTSVL-GMRELVKTN-----------Q--IYSFSVD-----------DA 181 (815)
Q Consensus 135 ~al~~~~~al~~~---~g----d-vv~~~~~h~s~~-~~~~~~~~~-----------g--~v~~~~~-----------~~ 181 (815)
+|+..++..+... +| + ||+....|+... ......... + .++.... ..
T Consensus 115 eA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (448)
T 3dod_A 115 EAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRD 194 (448)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhH
Confidence 9999999887621 44 5 777776654322 211111100 0 1111110 11
Q ss_pred hcchhhhhhhhhhhhhcCCCccEEEEeccc-CCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCC
Q psy16512 182 RNMLNEFKESQENVENMRHSNSLFVYPAES-NFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGS 255 (815)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~-n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~ 255 (815)
.+++.++++++ ...+++++|+++.++ |++|.+.+ +++|.++|+ +||+++|+|+++. +|.
T Consensus 195 ~d~~~le~~l~----~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~-----------~~~~~lI~DEv~~g~g~ 259 (448)
T 3dod_A 195 QCLRELAQLLE----EHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCT-----------TYDVLMIVDEVATGFGR 259 (448)
T ss_dssp HHHHHHHHHHH----HHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHH-----------HTTCEEEEECTTTTTTT
T ss_pred HHHHHHHHHHH----hCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHH-----------HhCCEEEEeccccCCCc
Confidence 13444554332 112457888888888 99998877 888899998 8999999999976 332
Q ss_pred C--C--CCCCCCCCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCC
Q psy16512 256 N--M--LDLKQHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTV 330 (815)
Q Consensus 256 ~--~--~dl~~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 330 (815)
. . .+.....+|++ +++|.+++. ..+|++++++++++.+.+....... . ......+.
T Consensus 260 ~g~~~a~~~~~~~~di~--t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~----------------~-~~~~t~~~ 320 (448)
T 3dod_A 260 TGKMFACEHENVQPDLM--AAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKT----------------F-FHGHSYTG 320 (448)
T ss_dssp TSSSSGGGGGTCCCSEE--EECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCC----------------C-CCCCTTTT
T ss_pred ccchhhhhhcCCCCCEE--EecccccCCcCceEEEEECHHHHHHhhhccccCCc----------------c-cccCCCCc
Confidence 1 1 11122346766 466988843 1479999999887766431100000 0 00112245
Q ss_pred ChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCc--c
Q psy16512 331 NYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTY--Y 408 (815)
Q Consensus 331 ~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~--~ 408 (815)
|.+++.++.++++.+... ...++.+++.+++.+.|.++. ..|.+.... ..+.++.+.+....... +
T Consensus 321 ~~~~~aaa~aal~~~~~~-~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~--------~~g~~~~~~~~~~~~~~~~~ 388 (448)
T 3dod_A 321 NQLGCAVALENLALFESE-NIVEQVAEKSKKLHFLLQDLH---ALPHVGDIR--------QLGFMCGAELVRSKETKEPY 388 (448)
T ss_dssp CHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHT---TSTTEEEEE--------EETTEEEEEECSBTTTTBCC
T ss_pred CHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHh---cCCCeEEEE--------eeeEEEEEEEccCccccccc
Confidence 667777777888776542 123677777777777776531 113343331 23678888876422110 0
Q ss_pred C-----HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHH
Q psy16512 409 G-----YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDD 483 (815)
Q Consensus 409 ~-----~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ed 483 (815)
. ...+.+.|.++||.++++ .+++|+++++..|+++
T Consensus 389 ~~~~~~~~~~~~~l~~~Gv~~~~~----------------------------------------~~~iRi~~~~~~t~e~ 428 (448)
T 3dod_A 389 PADRRIGYKVSLKMRELGMLTRPL----------------------------------------GDVIAFLPPLASTAEE 428 (448)
T ss_dssp CGGGCHHHHHHHHHHHTTEECCEE----------------------------------------TTEEEECCCTTCCHHH
T ss_pred chhhHHHHHHHHHHHHCCcEEecc----------------------------------------CCEEEEECCCCCCHHH
Confidence 0 135777788889998753 1689999998999999
Q ss_pred HHHHHHHHHHHHhh
Q psy16512 484 VKYFLSFLNQYFLQ 497 (815)
Q Consensus 484 i~~lv~~L~~~~~~ 497 (815)
+++++++|++++.+
T Consensus 429 i~~~l~~l~~~l~~ 442 (448)
T 3dod_A 429 LSEMVAIMKQAIHE 442 (448)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
No 215
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.71 E-value=3e-15 Score=170.38 Aligned_cols=345 Identities=13% Similarity=0.089 Sum_probs=212.6
Q ss_pred hhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+. +..++.+.+++.+++....+..+. ...... ..++.++++++++.+.+. |+|++|++
T Consensus 53 G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~--~~~~~~----~~~la~~l~~~~~~~~~~--v~~~~sGs 124 (476)
T 3i5t_A 53 GRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPW--YMATSP----AARLAEKIATLTPGDLNR--IFFTTGGS 124 (476)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTT--TCBCHH----HHHHHHHHHTTSSTTCCE--EEEESSHH
T ss_pred CCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccC--ccCCHH----HHHHHHHHHhcCCCCcCE--EEEeCchH
Confidence 4456665443 234788899888877653222221 112233 678889999999766665 99999999
Q ss_pred hhHHHHHhhhccC------CC-c-EEEecCCCcchhhHHHHhhcc------------c--eEEcCchhh-hc--------
Q psy16512 135 SAIKTVSEYFEFN------EG-S-FIYLTDNHTSVLGMRELVKTN------------Q--IYSFSVDDA-RN-------- 183 (815)
Q Consensus 135 ~al~~~~~al~~~------~g-d-vv~~~~~h~s~~~~~~~~~~~------------g--~v~~~~~~~-~~-------- 183 (815)
+|+..++..+... +| + ||.....|.........+... + .++...... .+
T Consensus 125 eA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 204 (476)
T 3i5t_A 125 TAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLD 204 (476)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHH
Confidence 9999999887521 33 3 777666654433222111110 1 121111000 01
Q ss_pred --chhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC
Q psy16512 184 --MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN 256 (815)
Q Consensus 184 --~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~ 256 (815)
.+.++++++ +...+++++|+++.+++++|.+.+ +++|.++|+ ++|+++|+|+++. +|..
T Consensus 205 ~~~~~le~~i~---~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~-----------~~gillI~DEv~~g~gr~ 270 (476)
T 3i5t_A 205 DLVQEFEDRIE---SLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICE-----------KHDILYISDEVVTGFGRC 270 (476)
T ss_dssp HHHHHHHHHHH---HHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHH-----------HTTCEEEEECTTTTTTTT
T ss_pred HHHHHHHHHHH---hcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEEecccCCccc
Confidence 334444332 111145789999999999998766 788888888 8999999999976 3221
Q ss_pred --CC--C-CCCCCCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCC
Q psy16512 257 --ML--D-LKQHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTV 330 (815)
Q Consensus 257 --~~--d-l~~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 330 (815)
.. . .....+|+++ ++|.+++. -.+|++++++++++.+.+........ ......+.
T Consensus 271 G~~~~~~~~~~v~pdi~t--~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~-----------------~~~~t~~~ 331 (476)
T 3i5t_A 271 GEWFASEKVFGVVPDIIT--FAKGVTSGYVPLGGLAISEAVLARISGENAKGSWF-----------------TNGYTYSN 331 (476)
T ss_dssp SSSCHHHHTTCCCCSEEE--ECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEE-----------------CCCCTTTT
T ss_pred cCceeeecccCCCcchhh--hhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccc-----------------cccCCCCc
Confidence 11 1 2233578775 56988842 23799999998876664321000000 00112245
Q ss_pred ChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCc--c
Q psy16512 331 NYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTY--Y 408 (815)
Q Consensus 331 ~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~--~ 408 (815)
|..+++|+.++++.+... ...++.+++.+++.+.|+.+. ..|.+..+. ..+.++.+.+....... +
T Consensus 332 np~a~aAa~aaL~~~~~~-~~~~~~~~~~~~l~~~L~~l~---~~~~v~~v~--------~~G~~~~i~~~~~~~~~~~~ 399 (476)
T 3i5t_A 332 QPVACAAALANIELMERE-GIVDQAREMADYFAAALASLR---DLPGVAETR--------SVGLVGCVQCLLDPTRADGT 399 (476)
T ss_dssp CHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHTTT---TSTTEEEEE--------EETTEEEEEECCC-----CC
T ss_pred CHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHh---cCCCeEEEE--------ecCceeEEEEecCccccccc
Confidence 667777777888877542 223888888999999888652 124454442 23678888876432110 0
Q ss_pred -----CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHH
Q psy16512 409 -----GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDD 483 (815)
Q Consensus 409 -----~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ed 483 (815)
....+.+.|.++||.+++. .+++||++++..|+++
T Consensus 400 ~~~~~~~~~~~~~l~~~Gv~v~~~----------------------------------------g~~iRi~p~l~~t~e~ 439 (476)
T 3i5t_A 400 AEDKAFTLKIDERCFELGLIVRPL----------------------------------------GDLCVISPPLIISRAQ 439 (476)
T ss_dssp HHHHHHHHHHHHHHHHTTEECEEE----------------------------------------TTEEEECCCTTCCHHH
T ss_pred cchhHHHHHHHHHHHHCCCEEEec----------------------------------------CCEEEEECCCCCCHHH
Confidence 0234667778889998751 1689999998899999
Q ss_pred HHHHHHHHHHHHhhc
Q psy16512 484 VKYFLSFLNQYFLQQ 498 (815)
Q Consensus 484 i~~lv~~L~~~~~~~ 498 (815)
+++++++|++++.+-
T Consensus 440 i~~~l~~l~~~l~~~ 454 (476)
T 3i5t_A 440 IDEMVAIMRQAITEV 454 (476)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987543
No 216
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.71 E-value=1.5e-16 Score=178.73 Aligned_cols=329 Identities=11% Similarity=0.031 Sum_probs=201.0
Q ss_pred hhhhhhhhccc------ccchhhHHHHHHHHhhcc-ccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 61 DICYLDYTGAG------VYSQSQMNQTIEQLKENI-FSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 61 ~~iyLd~a~~~------~~p~~v~~al~~~l~~~~-~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
+..|+|..+.. ..++.+.+++.+++.... +.. .... ..++.++++++++ +++. |+|++|+
T Consensus 51 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~------~~~~----~~~la~~l~~~~~-~~~~--v~~~~gg 117 (427)
T 3fq8_A 51 GNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGA------PCAL----ENVLAEMVNDAVP-SIEM--VRFVNSG 117 (427)
T ss_dssp SCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCSS------CCHH----HHHHHHHHHHHST-TCSE--EEEESSH
T ss_pred CCEEEECCCchhhhccCCCCHHHHHHHHHHHHhCCCcCC------CCHH----HHHHHHHHHHhCC-CCCE--EEEeCCH
Confidence 44577765432 237888888887775421 111 2233 6788899999997 5555 9999999
Q ss_pred hhhHHHHHh---hhccCCCcEEEecCCCcchhhHHHHhhccc----eEEcCchh------------hhcchhhhhhhhhh
Q psy16512 134 TSAIKTVSE---YFEFNEGSFIYLTDNHTSVLGMRELVKTNQ----IYSFSVDD------------ARNMLNEFKESQEN 194 (815)
Q Consensus 134 t~al~~~~~---al~~~~gdvv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~------------~~~~~~~~~~l~~~ 194 (815)
++|+..++. .+. +++++|+....|+........+...+ .++..... ..+++.++++++
T Consensus 118 sea~~~al~~a~~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~-- 194 (427)
T 3fq8_A 118 TEACMAVLRIMRAYT-GRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFA-- 194 (427)
T ss_dssp HHHHHHHHHHHHHHH-CCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhh-CCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCCHHHHHHHHH--
Confidence 999999984 333 34447776666544222111110000 00110000 014455555443
Q ss_pred hhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccccCCC-----CCCCCCCCC
Q psy16512 195 VENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-----MLDLKQHQP 265 (815)
Q Consensus 195 ~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-----~~dl~~~~~ 265 (815)
...+++++|+++.++|++|.+.| +++|.++|+ ++|+++|+|+++. +.. ..+.....+
T Consensus 195 --~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~-----------~~~~~li~DEv~~-g~~~g~~~~~~~~~~~~ 260 (427)
T 3fq8_A 195 --ENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITL-----------EHDALLVFDEVIT-GFRIAYGGVQEKFGVTP 260 (427)
T ss_dssp --HSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHH-----------HTTCEEEEECTTT-BTTTBTTHHHHHTTCCC
T ss_pred --hCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEecccc-ccccCcchhhHhcCCCC
Confidence 12236899999999999999999 999999999 8999999999987 220 011112346
Q ss_pred cEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHH
Q psy16512 266 DFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFD 343 (815)
Q Consensus 266 D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~ 343 (815)
|++ |++|.|+ + | +|++++++++++.+.+... . ......+.|..+++++.++++
T Consensus 261 di~--t~sK~~~-~-G~~~G~~~~~~~~~~~~~~~~~--~-------------------~~~~t~~~~~~~~aa~~aal~ 315 (427)
T 3fq8_A 261 DLT--TLGKIIG-G-GLPVGAYGGKREIMQLVAPAGP--M-------------------YQAGTLSGNPLAMTAGIKTLE 315 (427)
T ss_dssp SEE--EECGGGG-T-TSSCEEEEECHHHHTTBTTTSS--B-------------------CCCCTTTTCHHHHHHHHHHHH
T ss_pred Chh--hhhhhhh-C-CcceEEEEEcHHHHHhhccCCC--c-------------------cccCCCCcCHHHHHHHHHHHH
Confidence 764 5669998 4 5 8999999888766643100 0 001112347777777778877
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC---------ccCHHHHH
Q psy16512 344 TMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT---------YYGYSEVQ 414 (815)
Q Consensus 344 ~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~---------~~~~~~v~ 414 (815)
.+.. ....++.+++.+++.+.|.++.... +..... ...+.++.+.+...... ......+.
T Consensus 316 ~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 384 (427)
T 3fq8_A 316 LLRQ-PGTYEYLDQITKRLSDGLLAIAQET--GHAACG--------GQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFH 384 (427)
T ss_dssp HHTS-TTHHHHHHHHHHHHHHHHHHHHHHT--TCCCEE--------EEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHH
T ss_pred HHHh-cCHHHHHHHHHHHHHHHHHHHHHhC--CCCeEE--------EEeeeEEEEEEecCccccccccccccHHHHHHHH
Confidence 6644 1223778888888888887651000 100011 12367888877542211 00123577
Q ss_pred HhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 415 NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 415 ~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
+.|.++||.++++.. . |++++...|++|+++++++|+++
T Consensus 385 ~~l~~~Gi~v~~~~~---------------------------------------~--r~~~~~~~t~e~i~~~l~~l~~~ 423 (427)
T 3fq8_A 385 RGMLEQGIYLAPSQF---------------------------------------E--AGFTSLAHTEEDIDATLAAARTV 423 (427)
T ss_dssp HHHHHTTEECCSSTT---------------------------------------S--CEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCcEEecCCC---------------------------------------C--CEEeeCcCCHHHHHHHHHHHHHH
Confidence 778889999876421 2 44556678999999999999998
Q ss_pred Hh
Q psy16512 495 FL 496 (815)
Q Consensus 495 ~~ 496 (815)
+.
T Consensus 424 l~ 425 (427)
T 3fq8_A 424 MS 425 (427)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 217
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.71 E-value=1.5e-16 Score=177.22 Aligned_cols=242 Identities=14% Similarity=0.007 Sum_probs=162.8
Q ss_pred HHHHHHHHHhHcCCCCCceeEEe--cCCchhhHHHHHhhhccCCCc-EEEec-CCCcchhhHH--------HHhhccc--
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIF--TSGATSAIKTVSEYFEFNEGS-FIYLT-DNHTSVLGMR--------ELVKTNQ-- 172 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~--t~g~t~al~~~~~al~~~~gd-vv~~~-~~h~s~~~~~--------~~~~~~g-- 172 (815)
.+++++.+++++|++.. +++ ++|+++|+.+++.++. ++|| |++.. ..|+....+. ..+...|
T Consensus 76 ~~~Le~~lA~l~g~e~a---lv~p~~~sGt~A~~~al~all-~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~ 151 (427)
T 3hvy_A 76 RDSLDRVYANIFNTESA---FVRPHFVNGTHAIGAALFGNL-RPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVK 151 (427)
T ss_dssp HHHHHHHHHHHHTCSEE---EEETTCCSHHHHHHHHHHHTC-CTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCE
T ss_pred HHHHHHHHHHHhCCCce---EEeCCCCcHHHHHHHHHHHhc-CCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCE
Confidence 77899999999998652 554 7888999999999997 9999 77776 6776655333 3344455
Q ss_pred eEEcC-chhhhcchhhhhhhhhhhhhcCCCccEEEEec----ccCCCccccChHHHHHHhhccccccccccCC--CCeEE
Q psy16512 173 IYSFS-VDDARNMLNEFKESQENVENMRHSNSLFVYPA----ESNFSGTKYPLSWCNTVHRNHVFKKHFKCSR--SNCFV 245 (815)
Q Consensus 173 ~v~~~-~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~----~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~--~gi~v 245 (815)
+..++ .++..+++.++++++ + .++|++|++++ ++||||.+.|+++|.++|+ + +|+++
T Consensus 152 ~~~v~~~~~~~d~e~l~~~i~---~--~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~-----------~~~~g~~l 215 (427)
T 3hvy_A 152 YKMVDLKDGKVDINTVKEELK---K--DDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIR-----------EVNENVIV 215 (427)
T ss_dssp EEECCCBTTBCCHHHHHHHHH---H--CTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHH-----------HHCSSSEE
T ss_pred EEEecCCCCCcCHHHHHHHhh---C--CCCCEEEEEECCCCCCCCccccHHHHHHHHHHHH-----------HhCCCCEE
Confidence 44444 345677777776442 0 15799999999 9999999999999999999 7 89999
Q ss_pred EEecccccCCCCCCCCCCCCcEEEEccccccccC--CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccc
Q psy16512 246 LLDAATYCGSNMLDLKQHQPDFISISFYKMFGYP--TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFE 323 (815)
Q Consensus 246 ivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p--~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 323 (815)
++|++++.+........+++|+++.|+||++|++ ...|+++.++++++.++......+.
T Consensus 216 ivD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~------------------- 276 (427)
T 3hvy_A 216 FVDNCYGEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGI------------------- 276 (427)
T ss_dssp EEECTTCTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTT-------------------
T ss_pred EEECCccccccCCCCcccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCc-------------------
Confidence 9999998776222223457899999999999952 1238999998887766432110000
Q ss_pred cccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEe
Q psy16512 324 KFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLL 401 (815)
Q Consensus 324 ~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~ 401 (815)
....+ +++.....+..++..+. ...++..+.+.++.+.|+++ +++++.... ...+.-+++|.+.
T Consensus 277 g~~~~-~~~~~a~~~~~gl~~~~---~r~~~~~~~a~~la~~L~~~-------g~~V~p~~~---~~~~~li~~~~l~ 340 (427)
T 3hvy_A 277 GGECG-STFGVMRSLYEGLFMAP---HVTIEAVKGAVFCARIMELA-------GFDVLPKYN---DKRTDIIQAIKFN 340 (427)
T ss_dssp GGGCC-CCTTCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHT-------TCEEESCTT---SCCSSSEEEEECS
T ss_pred ccccC-CCHHHHHHHHHhHhHHH---HHHHHHHHHHHHHHHHHHhC-------CCeecCCCC---CCCceEEEEEeCC
Confidence 01111 11111223333443332 23477888888999999987 456643221 1233448888875
No 218
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.71 E-value=1.2e-15 Score=173.46 Aligned_cols=341 Identities=12% Similarity=0.055 Sum_probs=212.1
Q ss_pred hhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+. +..++.+.+++.+++....+..... ...... ..++.++++++++.+.+. |+|++|++
T Consensus 54 G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~-~~~~~~----~~~lae~l~~~~~~~~~~--v~~~~sGs 126 (472)
T 3hmu_A 54 GEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFF-KTTHVP----AIALAQKLAELAPGDLNH--VFFAGGGS 126 (472)
T ss_dssp CCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSS-SEECHH----HHHHHHHHHHHSCTTEEE--EEEESSHH
T ss_pred CCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcccccccc-ccCCHH----HHHHHHHHHHhCCCCCCE--EEEeCCHH
Confidence 4556665542 2346888888888776532111111 112223 668889999998776655 99999999
Q ss_pred hhHHHHHhhhcc------CC-Cc-EEEecCCCcchhhHHHHhhcc-----------c--eEEcCchhh----hc------
Q psy16512 135 SAIKTVSEYFEF------NE-GS-FIYLTDNHTSVLGMRELVKTN-----------Q--IYSFSVDDA----RN------ 183 (815)
Q Consensus 135 ~al~~~~~al~~------~~-gd-vv~~~~~h~s~~~~~~~~~~~-----------g--~v~~~~~~~----~~------ 183 (815)
+|+..++..+.. ++ ++ +|.....|.........+... + .++...... .+
T Consensus 127 eA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~ 206 (472)
T 3hmu_A 127 EANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGL 206 (472)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcccCHHHHHH
Confidence 999999988762 12 34 777666554432211111110 1 222211000 01
Q ss_pred --chhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC
Q psy16512 184 --MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN 256 (815)
Q Consensus 184 --~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~ 256 (815)
++.++++++ +...+++++|+++.+++++|.+.| +++|.++|+ ++|+++|+|+++. +|..
T Consensus 207 ~~~~~le~~i~---~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~-----------~~gillI~DEv~~gfgr~ 272 (472)
T 3hmu_A 207 ARARELEEAIL---ELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICD-----------KYDILLIADEVICGFGRT 272 (472)
T ss_dssp HHHHHHHHHHH---HHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHH-----------HTTCEEEEECTTTTTTTT
T ss_pred HHHHHHHHHHH---hcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEEccccCCccc
Confidence 334444332 111245789999999999999987 888999998 8999999999976 3321
Q ss_pred C--C--CCCCCCCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCC
Q psy16512 257 M--L--DLKQHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVN 331 (815)
Q Consensus 257 ~--~--dl~~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 331 (815)
. . +.....+|+++ ++|.+++. -.+|++++++++++.+.+..+. .....+.|
T Consensus 273 G~~~a~~~~~v~pdi~t--~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~----------------------~~~t~~~n 328 (472)
T 3hmu_A 273 GNWFGTQTMGIRPHIMT--IAKGLSSGYAPIGGSIVCDEVAHVIGKDEFN----------------------HGYTYSGH 328 (472)
T ss_dssp SSSCHHHHHTCCCSEEE--ECGGGTTTSSCCEEEEEEHHHHHHHTTSCBC----------------------CCCTTTTC
T ss_pred CccchhHHhCCCCceee--echhhhcCCcceEEEEECHHHHHhcccCCcc----------------------ccCCCCCC
Confidence 1 1 11123578875 56988743 2379999999887665221000 01112456
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC--Ccc
Q psy16512 332 YLAIISLKYGFDTMEKKRKSFTNAF-ELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG--TYY 408 (815)
Q Consensus 332 ~~~~~al~~al~~l~~~~~~~~~~~-~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~--~~~ 408 (815)
.++.+++.++++.+... ...++.+ ++.+++++.|+++.. .|.+..+. ..+.++.+.+..... ..+
T Consensus 329 p~a~aAa~aaL~~~~~~-~~~~~~~~~~~~~l~~~L~~l~~---~~~v~~vr--------~~G~~~~i~~~~~~~~~~~~ 396 (472)
T 3hmu_A 329 PVAAAVALENLRILEEE-NILDHVRNVAAPYLKEKWEALTD---HPLVGEAK--------IVGMMASIALTPNKASRAKF 396 (472)
T ss_dssp HHHHHHHHHHHHHHHHT-THHHHHHHTHHHHHHHHHHGGGG---STTEEEEE--------EETTEEEEEECSCGGGTCCB
T ss_pred HHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHhc---CCCeEEEE--------ecCceEEEEEecCccccccc
Confidence 67777777888876542 2237788 888889988877621 14454442 236788888763211 000
Q ss_pred ------CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHH
Q psy16512 409 ------GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWD 482 (815)
Q Consensus 409 ------~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~e 482 (815)
....+.+.|.++||.++++ .++|||++.+..|++
T Consensus 397 ~~~~~~~~~~~~~~l~~~Gv~v~~~----------------------------------------g~~iRi~p~~~~t~e 436 (472)
T 3hmu_A 397 ASEPGTIGYICRERCFANNLIMRHV----------------------------------------GDRMIISPPLVITPA 436 (472)
T ss_dssp SSCTTHHHHHHHHHHHHTTBCCEEE----------------------------------------TTEEEECCCTTCCHH
T ss_pred cchhHHHHHHHHHHHHHCCcEEEec----------------------------------------CCEEEEECCCCCCHH
Confidence 0235677788889988753 158999999899999
Q ss_pred HHHHHHHHHHHHHhhc
Q psy16512 483 DVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 483 di~~lv~~L~~~~~~~ 498 (815)
++++++++|++++.+-
T Consensus 437 ~i~~~l~~l~~~l~~~ 452 (472)
T 3hmu_A 437 EIDEMFVRIRKSLDEA 452 (472)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987654
No 219
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.71 E-value=2.6e-15 Score=169.94 Aligned_cols=340 Identities=10% Similarity=-0.013 Sum_probs=206.2
Q ss_pred hhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCC-CCceeEEecCCc
Q psy16512 61 DICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTD-SDHYSVIFTSGA 133 (815)
Q Consensus 61 ~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~-~~~~~iv~t~g~ 133 (815)
+..|+|..+. +.-++.+.+++.+++.... +.......... ..++.++++++++.. .+ .++||+|+
T Consensus 60 g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~--~~~~~~~~~~~----~~~la~~l~~~~~~~~~~--~v~~~~sG 131 (451)
T 3oks_A 60 GNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFT--HTCFMVTPYEG----YVAVCEQLNRLTPVRGDK--RSALFNSG 131 (451)
T ss_dssp SCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCS--CCTTTTSCCHH----HHHHHHHHHHHSSCCSSE--EEEEESSH
T ss_pred CCEEEEcCCCccccccCCCCHHHHHHHHHHHHhcc--cccCCccCCHH----HHHHHHHHHHhCCcCCCC--EEEEeCcH
Confidence 4457776543 1236888888888775421 11111112223 668889999998754 23 49999999
Q ss_pred hhhHHHHHhhhccCCC-c-EEEecCCCcchhh-HHHHhhcc------------c--eEEcCchh-------------hhc
Q psy16512 134 TSAIKTVSEYFEFNEG-S-FIYLTDNHTSVLG-MRELVKTN------------Q--IYSFSVDD-------------ARN 183 (815)
Q Consensus 134 t~al~~~~~al~~~~g-d-vv~~~~~h~s~~~-~~~~~~~~------------g--~v~~~~~~-------------~~~ 183 (815)
++|+..++..+...+| + +|.....|+.... ........ + .+++.... ..+
T Consensus 132 seA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 211 (451)
T 3oks_A 132 SEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELA 211 (451)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHH
Confidence 9999999977652134 4 7776666554332 22221110 1 23333110 011
Q ss_pred chhhhhhhhhhhhhcC-CCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC-
Q psy16512 184 MLNEFKESQENVENMR-HSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN- 256 (815)
Q Consensus 184 ~~~~~~~l~~~~~~~~-~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~- 256 (815)
.+.+.+. +.+.+. +++.+|+++..++..|.+.+ +++|.++|+ +||+++|+|+++. ++..
T Consensus 212 ~~~~~~~---l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~-----------~~g~~lI~DEv~~g~g~~g 277 (451)
T 3oks_A 212 AKRAITV---IDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCR-----------KNDVVFIADEVQTGFARTG 277 (451)
T ss_dssp HHHHHHH---HHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHH-----------HTTCEEEEECTTTTTTTTS
T ss_pred HHHHHHH---HHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHH-----------HcCCEEEEEecccCCCccc
Confidence 2222222 222223 34677777777777778777 888999999 8999999999976 3221
Q ss_pred -C--CCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChh
Q psy16512 257 -M--LDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYL 333 (815)
Q Consensus 257 -~--~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 333 (815)
. .+.....+|++ |++|.+++.-.+|++++++++++.+.+... ....+.|.+
T Consensus 278 ~~~~~~~~~~~pdi~--t~sK~l~~G~~iG~v~~~~~~~~~~~~~~~------------------------~~t~~~~~~ 331 (451)
T 3oks_A 278 AMFACEHEGIDPDLI--VTAKGIAGGLPLSAVTGRAEIMDSPHVSGL------------------------GGTYGGNPI 331 (451)
T ss_dssp SSSGGGGGTCCCSEE--EECGGGGTTSSCEEEEEEHHHHTCSCTTSB------------------------CCSSSSCHH
T ss_pred cchhhhhcCCCCCee--eehhhhhCCcceEEEEECHHHHhhhcCCCc------------------------CCCCCCCHH
Confidence 1 11112346776 677999832237999999888766643221 112245667
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC---CCccCH
Q psy16512 334 AIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD---GTYYGY 410 (815)
Q Consensus 334 ~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~---~~~~~~ 410 (815)
+..++.++++.+... ...++.+++.+++++.|.++.. ..|.+..+. ..+.++.+.+.... ......
T Consensus 332 ~~aaa~aal~~~~~~-~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~~~--------~~G~~~~~~~~~~~~~~~~~~~~ 400 (451)
T 3oks_A 332 ACAAALATIETIESE-GLVARAQQIEKIMKDRLGRLQA--EDDRIGDVR--------GRGAMIAMELVKAGTTEPDADLT 400 (451)
T ss_dssp HHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHH--HCTTEEEEE--------EETTEEEEEEBSTTSCCBCHHHH
T ss_pred HHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHh--hCCCeEEEE--------EeeEEEEEEEecCccCCCCHHHH
Confidence 777777888876542 2237777777777777765410 003443332 23678888875311 011123
Q ss_pred HHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHH
Q psy16512 411 SEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSF 490 (815)
Q Consensus 411 ~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~ 490 (815)
..+.+.|.++||.++++.. ..+++|+++++..+++++++++++
T Consensus 401 ~~~~~~l~~~Gv~v~~~~~-------------------------------------~~~~iRi~~~~~~t~e~i~~~l~~ 443 (451)
T 3oks_A 401 KALCAGAHAAGVIVLSCGT-------------------------------------YGNVVRFLPPLSIGDDLLNEGLDV 443 (451)
T ss_dssp HHHHHHHHHTTEECEEECT-------------------------------------TSCEEEECCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCcEEecCCC-------------------------------------CCCEEEEECCCCCCHHHHHHHHHH
Confidence 4577788899999876421 136899999999999999999999
Q ss_pred HHHHHh
Q psy16512 491 LNQYFL 496 (815)
Q Consensus 491 L~~~~~ 496 (815)
|++++.
T Consensus 444 l~~~l~ 449 (451)
T 3oks_A 444 LEEVLR 449 (451)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
No 220
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.70 E-value=7.5e-16 Score=173.20 Aligned_cols=330 Identities=12% Similarity=0.089 Sum_probs=199.8
Q ss_pred chhhhhhhhcccc------cchhhHHHHHHHHhhcc-ccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCC
Q psy16512 60 KDICYLDYTGAGV------YSQSQMNQTIEQLKENI-FSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSG 132 (815)
Q Consensus 60 ~~~iyLd~a~~~~------~p~~v~~al~~~l~~~~-~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g 132 (815)
++..|+|..+... .++.+.+++.+++.... ++.|+ .. ..++.++++++++ ..+. ++|++|
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~------~~----~~~la~~l~~~~~-~~~~--v~~~~s 117 (429)
T 4e77_A 51 DGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFGAPT------EM----EVKMAQLVTDLVP-TMDM--VRMVNS 117 (429)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCSSCC------HH----HHHHHHHHHHHST-TCSE--EEEESS
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcccCCCC------HH----HHHHHHHHHhhCC-CCCE--EEEeCc
Confidence 3567888765432 46888888888775421 12222 23 6788899999987 4555 999999
Q ss_pred chhhHHHHHhhhcc--CCCcEEEecCCCcchhh-HHHHhhccc-------------------eEEcCchhhhcchhhhhh
Q psy16512 133 ATSAIKTVSEYFEF--NEGSFIYLTDNHTSVLG-MRELVKTNQ-------------------IYSFSVDDARNMLNEFKE 190 (815)
Q Consensus 133 ~t~al~~~~~al~~--~~gdvv~~~~~h~s~~~-~~~~~~~~g-------------------~v~~~~~~~~~~~~~~~~ 190 (815)
+++|+..++..+.. .++.+|.....|..... ..... ..+ ...+.. .+++.++++
T Consensus 118 Gsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~le~~ 193 (429)
T 4e77_A 118 GTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKA-GSGALTLGQPNSPGVPTDFAKHTLTCTY---NDLASVRQA 193 (429)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEETTCCCC-------------------CCCTTSCGGGGTTEEEECT---TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhc-CCcccccCCCCcCCCCCccCCceeecCC---CCHHHHHHH
Confidence 99999999885431 33347666655443322 11100 000 011111 134455544
Q ss_pred hhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc---cCCCC-CCCCC
Q psy16512 191 SQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY---CGSNM-LDLKQ 262 (815)
Q Consensus 191 l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~---~g~~~-~dl~~ 262 (815)
++ ...+++++|+++.+++.+|.+.| +++|.++|+ ++|+++|+|+++. .|... .+...
T Consensus 194 l~----~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~-----------~~~~lli~DEv~~g~r~g~~~~~~~~~ 258 (429)
T 4e77_A 194 FE----QYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCD-----------EFGALLIIDEVMTGFRVALAGAQDYYH 258 (429)
T ss_dssp HH----HSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHH-----------HHTCEEEEEETTTBTTTBTTCHHHHTT
T ss_pred HH----hcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEeccccCcccCcchHHHhcC
Confidence 32 22245788888877777888888 899999999 8999999999987 22210 11112
Q ss_pred CCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGF 342 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al 342 (815)
..+|++ |++|.+++.-.+|+++.++++++.+.+.-.. ......+.|..+++++.+++
T Consensus 259 ~~pdi~--t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~~---------------------~~~~t~~~~~~~~aaa~aal 315 (429)
T 4e77_A 259 VIPDLT--CLGKIIGGGMPVGAFGGRREVMNALAPTGPV---------------------YQAGTLSGNPIAMAAGFACL 315 (429)
T ss_dssp CCCSEE--EEEGGGGTTSCCEEEEECHHHHTTBTTTSSB---------------------CC--CCCCCHHHHHHHHHHH
T ss_pred CCCCee--eecccccCCCCeEEEEECHHHHHHhccCCCc---------------------cccCCCCCCHHHHHHHHHHH
Confidence 346764 7779988322489999998887665431000 01112256778888888888
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC-c---------cCHHH
Q psy16512 343 DTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT-Y---------YGYSE 412 (815)
Q Consensus 343 ~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~-~---------~~~~~ 412 (815)
+.+.. ....++.+++.+++.+.|.++.... +..... ...+.++.+.+...... . ....+
T Consensus 316 ~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~--~~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (429)
T 4e77_A 316 TEISQ-VGVYETLTELTDSLATGLRHAAKEE--NIPLVV--------NHVGGMFGLFFTNADTVTCYQDVMNCDVERFKR 384 (429)
T ss_dssp HHHTS-TTHHHHHHHHHHHHHHHHHHHHHHT--TCCCEE--------EEETTEEEEECCSSSCCCSHHHHHTSCHHHHHH
T ss_pred HHHHh-cCHHHHHHHHHHHHHHHHHHHHHhC--CCceEE--------EEeeeEEEEEEccCcccccccccccccHHHHHH
Confidence 87643 2223778888888888886641000 111111 22477888887653210 0 01135
Q ss_pred HHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHH
Q psy16512 413 VQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLN 492 (815)
Q Consensus 413 v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~ 492 (815)
+.+.|.++||.++++.. ..+|++ ...|++|+++++++|+
T Consensus 385 ~~~~l~~~Gi~v~~~~~---------------------------------------~~~~~~--~~~t~e~i~~~l~~l~ 423 (429)
T 4e77_A 385 FFHLMLEEGVYLAPSAF---------------------------------------EAGFMS--LAHSNEDIQKTVNAAR 423 (429)
T ss_dssp HHHHHHHTTEECCSSTT---------------------------------------SCEECC--TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCeEEeecCC---------------------------------------CCEEEe--ccCCHHHHHHHHHHHH
Confidence 77778888999876421 235554 5679999999999999
Q ss_pred HHHh
Q psy16512 493 QYFL 496 (815)
Q Consensus 493 ~~~~ 496 (815)
+++.
T Consensus 424 ~~l~ 427 (429)
T 4e77_A 424 RCFA 427 (429)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 9874
No 221
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.70 E-value=2.4e-15 Score=170.23 Aligned_cols=344 Identities=9% Similarity=0.005 Sum_probs=203.5
Q ss_pred hhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCC-CCceeEEecCCc
Q psy16512 61 DICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTD-SDHYSVIFTSGA 133 (815)
Q Consensus 61 ~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~-~~~~~iv~t~g~ 133 (815)
+..|+|..+. +..++.+.+++.+++.......+. ...... ..+++++++++++.+ .+ .|+||+|+
T Consensus 63 G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~--~~~~~~----~~~la~~l~~~~~~~~~~--~v~~~~sG 134 (453)
T 4ffc_A 63 GNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFM--VTPYEQ----YVQVAELLNALTPGDHDK--RTALFNSG 134 (453)
T ss_dssp SCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTT--TSCCHH----HHHHHHHHHHHSSCSSCE--EEEEESSH
T ss_pred CCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccccccC--cCCCHH----HHHHHHHHHHhCCCCCCc--EEEEeCcH
Confidence 4457776553 223788888888877542111111 112233 668889999999754 33 49999999
Q ss_pred hhhHHHHHhhhccCCC-c-EEEecCCCcchh-hHHHHhhcc------------c--eEEcCc---h--hhhcchhhhhhh
Q psy16512 134 TSAIKTVSEYFEFNEG-S-FIYLTDNHTSVL-GMRELVKTN------------Q--IYSFSV---D--DARNMLNEFKES 191 (815)
Q Consensus 134 t~al~~~~~al~~~~g-d-vv~~~~~h~s~~-~~~~~~~~~------------g--~v~~~~---~--~~~~~~~~~~~l 191 (815)
++|+..++..+...+| + +|.....|+... ......... + .+++.. + +....+.++..+
T Consensus 135 seA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 214 (453)
T 4ffc_A 135 AEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAI 214 (453)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHH
Confidence 9999999976642123 4 777776655433 222221111 1 233321 0 000011122112
Q ss_pred hhhhhhcCCC-ccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC--C--CCC
Q psy16512 192 QENVENMRHS-NSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM--L--DLK 261 (815)
Q Consensus 192 ~~~~~~~~~~-t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~--~--dl~ 261 (815)
..+++.+.++ +.+|+++..++..|.+.+ +++|.++|+ +||+++|+|+++. ++... . +..
T Consensus 215 ~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~-----------~~~~llI~DEv~~g~g~~g~~~a~~~~ 283 (453)
T 4ffc_A 215 SRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWAS-----------ENGVVFIADEVQTGFARTGAWFASEHE 283 (453)
T ss_dssp HHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHH-----------HHTCEEEEECTTTTTTTTSSSSTHHHH
T ss_pred HHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEecCccCCCcccccchhhhc
Confidence 2223333333 566666665555667766 788888998 8999999999976 32211 1 111
Q ss_pred CCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHH
Q psy16512 262 QHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYG 341 (815)
Q Consensus 262 ~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~a 341 (815)
...+|++ +++|.+++.-.+|++++++++++.+.+...+ ...+.|.++.+++.++
T Consensus 284 ~~~pdi~--t~sK~~~~G~~~G~~~~~~~i~~~~~~~~~~------------------------~t~~~~~~~~aaa~aa 337 (453)
T 4ffc_A 284 GIVPDIV--TMAKGIAGGMPLSAVTGRAELMDAVYAGGLG------------------------GTYGGNPVTCAAAVAA 337 (453)
T ss_dssp TCCCSEE--EECGGGGTTSSCEEEEEEHHHHTTSCTTSSC------------------------CSSSSCHHHHHHHHHH
T ss_pred CCCcchH--hhhhhhcCCcCeEEEEECHHHHhhhcccCcC------------------------CCCCcCHHHHHHHHHH
Confidence 2246765 5679998322389999998887666432211 1224566777777778
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC---CCccCHHHHHHhhh
Q psy16512 342 FDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD---GTYYGYSEVQNLAN 418 (815)
Q Consensus 342 l~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~---~~~~~~~~v~~~l~ 418 (815)
++.+... ...++.+++.+++.+.|.++.. ..|.+..+. ..+.++.+.+.... ........+.+.|.
T Consensus 338 l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 406 (453)
T 4ffc_A 338 LGVMREL-DLPARARAIEASVTSRLSALAE--EVDIIGEVR--------GRGAMLAIEIVKPGTLEPDAALTKSIAAEAL 406 (453)
T ss_dssp HHHHHHT-THHHHHHHHHHHHHHHHHHHHH--HCSSEEEEE--------EETTEEEEEEBCTTSCCBCHHHHHHHHHHHH
T ss_pred HHHhhhh-hHHHHHHHHHHHHHHHHHHHHh--hCCCeEEEE--------eeceEEEEEEecCcccCCCHHHHHHHHHHHH
Confidence 8776542 2236777777777777655410 003444332 23678888875411 01112345777888
Q ss_pred cCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 419 LKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 419 ~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
++||.++++.. ..+++|+++++..+++++++++++|++++.+
T Consensus 407 ~~Gv~v~~~~~-------------------------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 448 (453)
T 4ffc_A 407 SQGVLILTCGT-------------------------------------FGNVIRLLPPLVIGDDLLDEGITALSDIIRA 448 (453)
T ss_dssp HTTEECCEECT-------------------------------------TSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hCCCEEecCCC-------------------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999876421 1368999999999999999999999998754
No 222
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.67 E-value=3.2e-16 Score=176.21 Aligned_cols=332 Identities=9% Similarity=0.020 Sum_probs=200.4
Q ss_pred chhhhhhhhccc------ccchhhHHHHHHHHhhcc-ccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCC
Q psy16512 60 KDICYLDYTGAG------VYSQSQMNQTIEQLKENI-FSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSG 132 (815)
Q Consensus 60 ~~~iyLd~a~~~------~~p~~v~~al~~~l~~~~-~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g 132 (815)
++..|+|..+.. ..++.+.+++.+++.... +..|+ .. ..+++++++++++ ..+. ++|++|
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~------~~----~~~l~~~la~~~~-~~~~--v~~~~~ 117 (429)
T 3k28_A 51 DGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPT------EI----ENKLAKLVIERVP-SIEI--VRMVNS 117 (429)
T ss_dssp TCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCCSSCC------HH----HHHHHHHHHHHST-TCSE--EEEESS
T ss_pred CCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCcCCCC------HH----HHHHHHHHHHhCC-CCCE--EEEeCC
Confidence 345688876543 247888888888776421 11221 22 6678899999986 4554 999999
Q ss_pred chhhHHHHHhhhcc-CCCc-EEEecCCCcc-hhhHHHHhhccc--eEEcCc-hh-------------hhcchhhhhhhhh
Q psy16512 133 ATSAIKTVSEYFEF-NEGS-FIYLTDNHTS-VLGMRELVKTNQ--IYSFSV-DD-------------ARNMLNEFKESQE 193 (815)
Q Consensus 133 ~t~al~~~~~al~~-~~gd-vv~~~~~h~s-~~~~~~~~~~~g--~v~~~~-~~-------------~~~~~~~~~~l~~ 193 (815)
+++|+..++..+.. .+++ +|.....|.. ....... ...+ ...... .+ ..+++.++++++
T Consensus 118 Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~- 195 (429)
T 3k28_A 118 GTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIK-AGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFE- 195 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSS-CCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHh-cCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHH-
Confidence 99999999887652 2344 6666655433 2221111 1111 111100 00 013445554432
Q ss_pred hhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccccCCCC-----CCCCCCC
Q psy16512 194 NVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM-----LDLKQHQ 264 (815)
Q Consensus 194 ~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~-----~dl~~~~ 264 (815)
...+++++|++..++|++|.+.| +++|.++|+ +||+++|+|+++. +... .+.....
T Consensus 196 ---~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~-----------~~~~~li~DEv~~-g~~~g~~~~~~~~~~~ 260 (429)
T 3k28_A 196 ---QFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTE-----------QNGALLIFDEVMT-GFRVAYNCGQGYYGVT 260 (429)
T ss_dssp ---HHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHH-----------HHTCEEEEECTTT-TTTSSTTHHHHHHTCC
T ss_pred ---hCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEecccc-ccccCcchHHHHhCCC
Confidence 11245788999888889999998 889999999 8999999999985 2110 0011224
Q ss_pred CcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH
Q psy16512 265 PDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT 344 (815)
Q Consensus 265 ~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~ 344 (815)
+|++ +++|.|++...+|++++++++++.+.+.... ......+.|..++.++.++++.
T Consensus 261 ~di~--t~sK~~~~G~~iG~~~~~~~~~~~~~~~~~~---------------------~~~~t~~~~~~a~aaa~aal~~ 317 (429)
T 3k28_A 261 PDLT--CLGKVIGGGLPVGAYGGKAEIMRQVAPSGPI---------------------YQAGTLSGNPLAMAAGYETLVQ 317 (429)
T ss_dssp CSEE--EECGGGGTTSCCEEEEECHHHHTTBTTTSSB---------------------CCCCTTTTCHHHHHHHHHHHHT
T ss_pred Ccee--hhhhhhcCCCCeEEEEEcHHHHhhhccCCCc---------------------cccCCCCCChHHHHHHHHHHHH
Confidence 6765 5779888433489999998887665331000 0011224566677766677665
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC---------ccCHHHHHH
Q psy16512 345 MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT---------YYGYSEVQN 415 (815)
Q Consensus 345 l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~---------~~~~~~v~~ 415 (815)
+. ....++++++++++.+.|.++.... +.+..+ ...+.++.+.+...... .....++.+
T Consensus 318 ~~--~~~~~~~~~~~~~l~~~L~~~~~~~--~~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (429)
T 3k28_A 318 LT--PESYVEFERKAEMLEAGLRKAAEKH--GIPHHI--------NRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYR 385 (429)
T ss_dssp CC--HHHHHHHHHHHHHHHHHHHHHHHHT--TCCCEE--------EEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHhhC--CCCEEE--------EeeccEEEEEEecCCcccccccccccHHHHHHHHH
Confidence 43 1222788888888888887651000 111111 22367778876532210 001235677
Q ss_pred hhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 416 LANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 416 ~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.|.++||.++++. .+.+|+++ ..|++|+++++++|++++
T Consensus 386 ~l~~~Gv~v~~~~---------------------------------------~~~~r~~~--~~t~e~i~~~l~~l~~~l 424 (429)
T 3k28_A 386 EMVEQGVFLPPSQ---------------------------------------FEGLFLST--VHSDADIEATIAAAEIAM 424 (429)
T ss_dssp HHHHTTEECCSST---------------------------------------TSCBCCCT--TCCHHHHHHHHHHHHHHH
T ss_pred HHHHCCeEEecCC---------------------------------------CCCEEEEC--CCCHHHHHHHHHHHHHHH
Confidence 7888999987641 14578865 579999999999999987
Q ss_pred hh
Q psy16512 496 LQ 497 (815)
Q Consensus 496 ~~ 497 (815)
.+
T Consensus 425 ~~ 426 (429)
T 3k28_A 425 SK 426 (429)
T ss_dssp HT
T ss_pred HH
Confidence 53
No 223
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.67 E-value=4.9e-16 Score=172.73 Aligned_cols=291 Identities=12% Similarity=0.065 Sum_probs=175.0
Q ss_pred HHHHHHHHHhHc-CC-----CCCceeEEecCCchhhHHHHHhhhccC--CCc-EEEecCCCcchhhHHHHhhccc-eEEc
Q psy16512 107 IDQMRTKILQYF-NT-----DSDHYSVIFTSGATSAIKTVSEYFEFN--EGS-FIYLTDNHTSVLGMRELVKTNQ-IYSF 176 (815)
Q Consensus 107 ~~~~r~~la~~~-g~-----~~~~~~iv~t~g~t~al~~~~~al~~~--~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~ 176 (815)
..++|+.+++++ +. ++++.+++.|+|+++|+.+++.++. . + | |++..+.|+.+....+.++... .+++
T Consensus 74 ~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~-~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~ 151 (405)
T 3k7y_A 74 TEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLK-MLNV-ETLYVTNPPYINHVNMIESRGFNLKYINF 151 (405)
T ss_dssp CHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHH-TTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECC
T ss_pred cHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHH-hcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEec
Confidence 678888888876 21 2233246999999999999999887 5 7 8 9999988877765555443332 4444
Q ss_pred -Cc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecc-cCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc
Q psy16512 177 -SV-DDARNMLNEFKESQENVENMRHSNSLFVYPAE-SNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC 253 (815)
Q Consensus 177 -~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~-~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~ 253 (815)
+. +..++.+.++++++ ..+++++++++.+ |||||..++.+++.++++ .|+++++++|+|.++.-
T Consensus 152 ~~~~~~~~d~~~l~~~l~-----~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~--------~~~~~~~~vi~De~Y~~ 218 (405)
T 3k7y_A 152 FDYNLIDINYDLFLNDLR-----NIPNGSSVILQISCYNPCSVNIEEKYFDEIIE--------IVLHKKHVIIFDIAYQG 218 (405)
T ss_dssp EETTTTEECHHHHHHHHH-----HSCSSCEEEECCSSCTTTCCCCCHHHHHHHHH--------HHHHHCCEEEEEESCTT
T ss_pred cccccCCcCHHHHHHHHH-----hCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHH--------HHHHCCeEEEEecCccc
Confidence 22 24567777766543 1235678888665 899999999888666655 34489999999988642
Q ss_pred CC-CCC--------CC-CCCCCcEEEEccccccccCCc--ceEEEE---ecccccccCcccccCceEEEEecCCcccccc
Q psy16512 254 GS-NML--------DL-KQHQPDFISISFYKMFGYPTG--LGALIV---KQKSAHVLNKTFYGGGTVKISMANENFHIKK 318 (815)
Q Consensus 254 g~-~~~--------dl-~~~~~D~vv~S~~K~~g~p~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 318 (815)
-. ... .+ .....-+++.||+|.|+ .+| +||+++ +++.++.+...+..
T Consensus 219 l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-l~GlRiG~~~~~~~~~~~~~~~~~~l~~----------------- 280 (405)
T 3k7y_A 219 FGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMS-LYGERAGALHIVCKNQEEKKIVFNNLCF----------------- 280 (405)
T ss_dssp TSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSC-CTTTTEEEEEEECSSHHHHHHHHHHHHH-----------------
T ss_pred ccCCCcccchHHHHHHHhcCCcEEEEeeCCccCC-CccccceEEEEEeCCHHHHHHHHHHHHH-----------------
Confidence 11 100 00 11123477889999999 667 899875 23333222111000
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHH---Hhhh---hhH-HHHHHHHHHHHHHHH----hccccCCCCcEEEcCCCCCC
Q psy16512 319 DGLFEKFEDGTVNYLAIISLKYGFDTM---EKKR---KSF-TNAFELSQYTYFYFK----QLSYSNGQPLVELYHDTDYG 387 (815)
Q Consensus 319 ~~~~~~~~~gt~~~~~~~al~~al~~l---~~~~---~~~-~~~~~l~~~l~~~L~----~l~~~~~~p~~~l~~~~~~~ 387 (815)
..+....+++..+..++..+++.- ..+. ..+ +++++.++++.+.|+ ++.. ...++++.+.+
T Consensus 281 ---~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~---~~~~~~~~p~g-- 352 (405)
T 3k7y_A 281 ---IVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNL---NYDWNVYKKQR-- 352 (405)
T ss_dssp ---HHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTC---CCCGGGGSSCC--
T ss_pred ---HHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC---CCCCccccCCc--
Confidence 001111234445554544444321 1111 122 667888899999998 6610 00134443332
Q ss_pred CCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCC
Q psy16512 388 ESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKP 467 (815)
Q Consensus 388 ~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~ 467 (815)
+.++++.++. + ..+.|.++||.+.+|
T Consensus 353 -----g~f~~~~l~~---~------~~~~L~~~gV~v~p~---------------------------------------- 378 (405)
T 3k7y_A 353 -----GLFSFVPLLA---K------IAEHLKTHHIYIINN---------------------------------------- 378 (405)
T ss_dssp -----SSEEECGGGG---G------GTTTTTTTTEECCTT----------------------------------------
T ss_pred -----eEEEecCCCH---H------HHHHHHHCCEeecCC----------------------------------------
Confidence 3344433321 1 223458889988642
Q ss_pred ceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 468 TGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 468 ~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
+ |||++.. ++++|++++++|.+++.
T Consensus 379 -~--Ris~a~~-~~~~i~~~~~~i~~~~~ 403 (405)
T 3k7y_A 379 -G--RINVSGI-TKNNVDYIADKICLSLS 403 (405)
T ss_dssp -S--EEEGGGC-CTTHHHHHHHHHHHHHH
T ss_pred -C--eEEEecc-CHHHHHHHHHHHHHHHh
Confidence 3 9999743 56889999999999764
No 224
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.67 E-value=3.1e-16 Score=175.52 Aligned_cols=257 Identities=12% Similarity=0.074 Sum_probs=162.3
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEec-CCCcchhhHH-------HHhhccc----e
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLT-DNHTSVLGMR-------ELVKTNQ----I 173 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~-~~h~s~~~~~-------~~~~~~g----~ 173 (815)
.+++++.+++++|++.....++++ |+|+|+..++.++. ++|| ||+.. ..|+++.... ..++..| .
T Consensus 67 ~~~l~~~la~~~g~~~~~~~i~~~-sGt~Ai~~al~al~-~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~ 144 (431)
T 3ht4_A 67 RDTLEKVYADVFGAEAGLVRPQII-SGTHAISTALFGIL-RPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNA 144 (431)
T ss_dssp HHHHHHHHHHHTTCSEECCBTTSC-SHHHHHHHHHHTTC-CTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEE
T ss_pred HHHHHHHHHHHhCCCcccccceee-CHHHHHHHHHHHhC-CCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEE
Confidence 678999999999987643112355 66899999999987 9999 77776 7888766544 2333345 3
Q ss_pred EEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEec-ccCCCccc---cChHHHHHHhhccccccccccCC--CCeEEEE
Q psy16512 174 YSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPA-ESNFSGTK---YPLSWCNTVHRNHVFKKHFKCSR--SNCFVLL 247 (815)
Q Consensus 174 v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~-~~n~tG~~---~~l~~I~~l~~~~~~~~~~~~~~--~gi~viv 247 (815)
++.++++..+++.+++++ +++|++|++++ ++||+|.. .++++|.++|+ + +|+++++
T Consensus 145 v~~~~~~~~d~e~l~~~l-------~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~-----------~~~~~~~liv 206 (431)
T 3ht4_A 145 VPLTEGGLVDFEAVAAAI-------HSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVK-----------EIKPDVVVFV 206 (431)
T ss_dssp CCBCTTSSBCHHHHHHHC-------CTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHH-----------HHCTTCEEEE
T ss_pred eCCCCCCCcCHHHHHhhc-------CCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHH-----------hhCCCCEEEE
Confidence 444445556777776644 46899999995 55555554 45666677777 7 9999999
Q ss_pred ecccccCCCCCCCCCCCCcEEEEcccccccc---CCcceEEEEecccccccCcccccCceEEEEecCCcccccccCcccc
Q psy16512 248 DAATYCGSNMLDLKQHQPDFISISFYKMFGY---PTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEK 324 (815)
Q Consensus 248 D~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~---p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (815)
|++++.+....+...+++|+++.|++|++|+ |.| |+++.++++++.++......+. .
T Consensus 207 Dea~~~~~~~~~~~~~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~~li~~l~~~~~~~~~-------------------g 266 (431)
T 3ht4_A 207 DNCYGEFIEEQEPCHVGADLMAGSLIKNPGGGIVKTG-GYIVGKEQYVEACAYRLTSPGI-------------------G 266 (431)
T ss_dssp ECTTCTTSSSCCGGGTTCSEEEEETTSGGGTTTCSSC-EEEEECHHHHHHHHHHHSCTTT-------------------T
T ss_pred eCCChhhccCCCccccCCeEEEcCccccCCCCCCCce-EEEEecHHHHHHHHHHhccCCc-------------------c
Confidence 9999887643334455789999999999775 666 9999998887766432211000 0
Q ss_pred ccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC
Q psy16512 325 FEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD 404 (815)
Q Consensus 325 ~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~ 404 (815)
...+ +++....++..++..+. ...++..+.+.++.+.|+++ +++++.... ...++-++.+.+.+.
T Consensus 267 ~~~~-~~~~~~~~~~~~l~~~~---~~~~~~~~~a~~l~~~L~~~-------g~~v~p~~~---~~~~~li~~i~l~~~- 331 (431)
T 3ht4_A 267 AEAG-ASLYSLQEMYQGFFLAP---HVAGQALKGAIFTAAFLEKL-------GMNTSPAWN---APRTDLIQSVQFDDK- 331 (431)
T ss_dssp TSCS-CCCSCSHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-------TCCEESCTT---SCCSSSCCEEECCCH-
T ss_pred cccC-ccHHHHHHHHhHhhhHH---HHHHHHHHHHHHHHHHHHhC-------cCEecCCCC---CCCccEEEEEEeCCH-
Confidence 0111 11111122333444332 22367788888899999887 445543221 223445778877532
Q ss_pred CCccCHHHHHHhhhcCC
Q psy16512 405 GTYYGYSEVQNLANLKK 421 (815)
Q Consensus 405 ~~~~~~~~v~~~l~~~g 421 (815)
+ ....+.+.|.+..
T Consensus 332 -~--~~~~~~~~l~~~~ 345 (431)
T 3ht4_A 332 -D--RMIAFCQAIQYAS 345 (431)
T ss_dssp -H--HHHHHHHHHHHTS
T ss_pred -H--HHHHHHHHHHhcC
Confidence 1 1123555565543
No 225
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.67 E-value=1.3e-15 Score=171.52 Aligned_cols=329 Identities=10% Similarity=0.026 Sum_probs=202.3
Q ss_pred hhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+. +..++.+.+++.+.+... . +.. ..... ..+++++++++++ ..+. |+|++|++
T Consensus 55 g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~---~-~~~-~~~~~----~~~l~~~la~~~~-~~~~--v~~~~sgs 122 (434)
T 2epj_A 55 GARIVDLVLAYGPLILGHKHPRVLEAVEEALARG---W-LYG-APGEA----EVLLAEKILGYVK-RGGM--IRFVNSGT 122 (434)
T ss_dssp CCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC---S-CCS-SCCHH----HHHHHHHHHHHHC-TTCE--EEEESSHH
T ss_pred CCEEEEcccchhcccCCCCCHHHHHHHHHHHHhC---C-CCC-CCCHH----HHHHHHHHHHhCC-CCCE--EEEeCCHH
Confidence 3456665433 235678888888776542 1 111 11223 6788999999985 3444 99999999
Q ss_pred hhHHHHHhh---hccCCCcEEEecCCCcchhh-HHHHhh----------ccc--------eEEcCchhhhcchhhhhhhh
Q psy16512 135 SAIKTVSEY---FEFNEGSFIYLTDNHTSVLG-MRELVK----------TNQ--------IYSFSVDDARNMLNEFKESQ 192 (815)
Q Consensus 135 ~al~~~~~a---l~~~~gdvv~~~~~h~s~~~-~~~~~~----------~~g--------~v~~~~~~~~~~~~~~~~l~ 192 (815)
+|+.+++.+ +. .++++|+....|+.... ...... ..| .+++.. .+++.++++++
T Consensus 123 eA~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~---~d~~~le~~l~ 198 (434)
T 2epj_A 123 EATMTAIRLARGYT-GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY---NDVEALERVFA 198 (434)
T ss_dssp HHHHHHHHHHHHHH-CCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET---TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC---CCHHHHHHHHH
Confidence 999999987 54 55557777666544221 110000 001 111111 24455555443
Q ss_pred hhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccccCCC--C-C--CCCCC
Q psy16512 193 ENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN--M-L--DLKQH 263 (815)
Q Consensus 193 ~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~--~-~--dl~~~ 263 (815)
...+++++|+++.+++++|.+.| +++|.++|+ ++|+++|+|++++ |.. . . +....
T Consensus 199 ----~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~-----------~~g~~lI~DEv~~-g~~~g~~~~~~~~~~ 262 (434)
T 2epj_A 199 ----EYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSR-----------ESGALLILDEVVT-GFRLGLEGAQGYFNI 262 (434)
T ss_dssp ----HHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHH-----------HHTCEEEEEETTT-TTTSSTTHHHHHHTC
T ss_pred ----hCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHH-----------HcCCEEEEEcchh-ceeCCcchhhHHhCC
Confidence 11135788888888888999998 889999999 8999999999987 321 1 0 01122
Q ss_pred CCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHH
Q psy16512 264 QPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFD 343 (815)
Q Consensus 264 ~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~ 343 (815)
.+|++ |++|++++.-.+|++++++++++.+.+.. .. ......+.|..+++++.++++
T Consensus 263 ~~di~--s~sK~l~~G~~~G~v~~~~~~~~~l~~~~---~~------------------~~~~t~~~~~~~~aa~~a~l~ 319 (434)
T 2epj_A 263 EGDII--VLGKIIGGGFPVGAVAGSREVMSLLTPQG---KV------------------FNAGTFNAHPITMAAGLATLK 319 (434)
T ss_dssp CCSEE--EEEGGGGTTSSCEEEEECHHHHTTBTTTS---SB------------------CCCCTTTTCHHHHHHHHHHHH
T ss_pred CCCee--eecchhcCCcceeeeeecHHHHHhhccCC---Cc------------------ccCCCCCcCHHHHHHHHHHHH
Confidence 47865 77899983112799999988776554310 00 001112456777778888888
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC---------CccCHHHHH
Q psy16512 344 TMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG---------TYYGYSEVQ 414 (815)
Q Consensus 344 ~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~---------~~~~~~~v~ 414 (815)
.+.+ ....++.+++++++.+.|+++.... +....+ ...++++.+.+..... .......+.
T Consensus 320 ~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~--~~~~~~--------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (434)
T 2epj_A 320 ALEE-EPVYSVSREAAKALEEAASEVLDRT--GLPYTI--------NRVESMMQLFIGVEEVSNAAQARKADKKFYVKLH 388 (434)
T ss_dssp HHHH-SCHHHHHHHHHHHHHHHHHHHHHHH--TCCEEE--------EEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHH
T ss_pred HHHh-cCHHHHHHHHHHHHHHHHHHHHhhC--CCcEEE--------EEeeeEEEEEEeCCCcccchhccccCHHHHHHHH
Confidence 7765 2233888889999998887651000 111111 1236788888764110 001134577
Q ss_pred HhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 415 NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 415 ~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
+.|.++||.++++.. ..+|++ ...+++|+++++++|+++
T Consensus 389 ~~l~~~Gv~v~~~~~---------------------------------------~~~~~~--~~~t~e~i~~~l~~l~~~ 427 (434)
T 2epj_A 389 EEMLRRGVFIAPSNL---------------------------------------EAVFTG--LPHQGEALEIAVEGLRSS 427 (434)
T ss_dssp HHHHHTTEECCSSTT---------------------------------------SCEECC--TTCSHHHHHHHHHHHHHH
T ss_pred HHHHHCCeEEeccCC---------------------------------------CcEEEe--ccCCHHHHHHHHHHHHHH
Confidence 778889999886521 235655 567999999999999987
Q ss_pred Hh
Q psy16512 495 FL 496 (815)
Q Consensus 495 ~~ 496 (815)
+.
T Consensus 428 l~ 429 (434)
T 2epj_A 428 LK 429 (434)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 226
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.67 E-value=8.3e-15 Score=166.54 Aligned_cols=333 Identities=13% Similarity=0.123 Sum_probs=197.4
Q ss_pred chhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCCh--hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecC
Q psy16512 60 KDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGN--SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTS 131 (815)
Q Consensus 60 ~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~--~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~ 131 (815)
++..|+|..+. +.-++.+.+++.+++....+.+.... ....+. .+++.+.++++++...+. |+|++
T Consensus 61 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l----~~~la~~l~~~~~~~~~~--v~f~~ 134 (472)
T 1ohv_A 61 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENF----VEKLRESLLSVAPKGMSQ--LITMA 134 (472)
T ss_dssp TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTH----HHHHHHTGGGGCCTTCCE--EEEES
T ss_pred CCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccccccccccccHHHH----HHHHHHHHHHhCCCCcCE--EEEeC
Confidence 34567776432 23478888888765432211121111 111222 444555566666544554 99999
Q ss_pred CchhhHHHHHhhhc-------cC-----------------CC---c-EEEecCCCcc-hhhHHHHhhc-----cc-----
Q psy16512 132 GATSAIKTVSEYFE-------FN-----------------EG---S-FIYLTDNHTS-VLGMRELVKT-----NQ----- 172 (815)
Q Consensus 132 g~t~al~~~~~al~-------~~-----------------~g---d-vv~~~~~h~s-~~~~~~~~~~-----~g----- 172 (815)
|+++|+..++..+. .. +| + ||.....|.. .......... .+
T Consensus 135 sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~ 214 (472)
T 1ohv_A 135 CGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFD 214 (472)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCC
T ss_pred CchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCC
Confidence 99999999997762 01 35 5 7777755444 4333333221 11
Q ss_pred --eEEcCc-----h------h---hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhcccc
Q psy16512 173 --IYSFSV-----D------D---ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVF 232 (815)
Q Consensus 173 --~v~~~~-----~------~---~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~ 232 (815)
.+++.. . + ..+++.++++|+... ....++++|++..++|++|.+.| +++|.++|+
T Consensus 215 ~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~---- 289 (472)
T 1ohv_A 215 WPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYR-KKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISR---- 289 (472)
T ss_dssp CCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHH-HTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHH----
T ss_pred CcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHH----
Confidence 112210 0 0 124455555443100 00116899999999999999887 888999999
Q ss_pred ccccccCCCCeEEEEecccc-cCCCC--CCCCCCC----CcEEEEccccc-cccCCcceEEEEecccccccCcccccCce
Q psy16512 233 KKHFKCSRSNCFVLLDAATY-CGSNM--LDLKQHQ----PDFISISFYKM-FGYPTGLGALIVKQKSAHVLNKTFYGGGT 304 (815)
Q Consensus 233 ~~~~~~~~~gi~vivD~a~~-~g~~~--~dl~~~~----~D~vv~S~~K~-~g~p~G~G~l~~~~~~~~~l~~~~~g~~~ 304 (815)
++|+++|+|+++. +|... +....++ +|++ |++|. ++ | |+++ ++++. .+.+..
T Consensus 290 -------~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~--t~sK~~l~---G-G~~~-~~~~~-~~~~~~----- 349 (472)
T 1ohv_A 290 -------KHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVM--TFSKKMMT---G-GFFH-KEEFR-PNAPYR----- 349 (472)
T ss_dssp -------HTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEE--EECGGGSS---E-EEEE-CGGGS-CSSSSS-----
T ss_pred -------HhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEE--EEcccccc---C-CccC-chhhc-cccccc-----
Confidence 8999999999987 44321 2333333 7876 56698 45 3 6655 44431 111110
Q ss_pred EEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCc-EEEcCC
Q psy16512 305 VKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPL-VELYHD 383 (815)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~-~~l~~~ 383 (815)
.+...+.|.++++++.++++.+.+. ...++.+++++++.+.|+++.. +.|. +..+
T Consensus 350 -------------------~~~T~~~~~~~~aaa~aal~~~~~~-~~~~~~~~~~~~l~~~L~~l~~--~~~~~v~~~-- 405 (472)
T 1ohv_A 350 -------------------IFNTWLGDPSKNLLLAEVINIIKRE-DLLSNAAHAGKVLLTGLLDLQA--RYPQFISRV-- 405 (472)
T ss_dssp -------------------SCCSSSSCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHH--HCTTTCEEE--
T ss_pred -------------------ccCccCccHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHh--hCCCcEEee--
Confidence 0111234677777888888887652 2238889999999999877610 0021 2211
Q ss_pred CCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCccccc
Q psy16512 384 TDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDII 463 (815)
Q Consensus 384 ~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~ 463 (815)
...+.++.|.+.+. .....+.+.|.++||.+.++.
T Consensus 406 ------~~~g~~~~~~~~~~----~~~~~~~~~l~~~Gv~~~~~g----------------------------------- 440 (472)
T 1ohv_A 406 ------RGRGTFCSFDTPDE----SIRNKLISIARNKGVMLGGCG----------------------------------- 440 (472)
T ss_dssp ------EEETTEEEEECSSH----HHHHHHHHHHHHTTEECEEET-----------------------------------
T ss_pred ------cCCceEEEEEeCCh----hHHHHHHHHHHHCCeEEecCC-----------------------------------
Confidence 12367777766421 112357777778999886520
Q ss_pred CCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 464 DGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 464 ~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.++||+++++.+|++||++++++|++++.
T Consensus 441 ----~~~iRi~~~~~~t~e~i~~~~~~l~~~l~ 469 (472)
T 1ohv_A 441 ----DKSIRFRPTLVFRDHHAHLFLNIFSDILA 469 (472)
T ss_dssp ----TTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred ----CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 26899999999999999999999998764
No 227
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.66 E-value=2.4e-15 Score=168.79 Aligned_cols=328 Identities=13% Similarity=0.071 Sum_probs=198.4
Q ss_pred hhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+. +..++.+.+++.+++.... +.. ..... ..+++++++++++ .++. |+|++|++
T Consensus 51 g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~----~~~-~~~~~----~~~l~~~l~~~~~-~~~~--v~~~~~g~ 118 (424)
T 2e7u_A 51 GNRYLDYVMSWGPLILGHAHPKVLARVRETLERGL----TFG-APSPL----EVALAKKVKRAYP-FVDL--VRFVNSGT 118 (424)
T ss_dssp CCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCS----CCS-SCCHH----HHHHHHHHHHHCT-TCCE--EEEESSHH
T ss_pred CCEEEEccccccccccCCCCHHHHHHHHHHHHhCC----CCC-CCCHH----HHHHHHHHHHhCC-CCCE--EEEeCCHH
Confidence 3456665532 2356888888887775421 111 11223 6788899999986 4554 99999999
Q ss_pred hhHHHHHhh---hccCCCcEEEecCCCcchhh-HHHHhh----------ccc--------eEEcCchhhhcchhhhhhhh
Q psy16512 135 SAIKTVSEY---FEFNEGSFIYLTDNHTSVLG-MRELVK----------TNQ--------IYSFSVDDARNMLNEFKESQ 192 (815)
Q Consensus 135 ~al~~~~~a---l~~~~gdvv~~~~~h~s~~~-~~~~~~----------~~g--------~v~~~~~~~~~~~~~~~~l~ 192 (815)
+|+..++.. +. .++++|+....|+.... ...... ..| .+.+.. .+++.++++++
T Consensus 119 ea~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~---~d~~~le~~l~ 194 (424)
T 2e7u_A 119 EATMSALRLARGYT-GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY---NDPEGLREVLK 194 (424)
T ss_dssp HHHHHHHHHHHHHH-CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT---TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC---CCHHHHHHHHH
Confidence 999999885 54 55557777766554322 111110 001 122211 24445554332
Q ss_pred hhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccccCCCC--C---CCCCC
Q psy16512 193 ENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM--L---DLKQH 263 (815)
Q Consensus 193 ~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~--~---dl~~~ 263 (815)
...+++++|+++..++++|.+.| +++|.++ + ++|+++|+|+++. |... . +....
T Consensus 195 ----~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~-----------~~g~~lI~DEv~~-g~~~g~~~~~~~~~~ 257 (424)
T 2e7u_A 195 ----RRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-K-----------AYGVLLIADEVMT-GFRLAFGGATELLGL 257 (424)
T ss_dssp ----HHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-G-----------GGTCEEEEECTTT-TTTSSTTHHHHHHTC
T ss_pred ----hCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-H-----------HcCCEEEEecCcc-ccccchhHHHHHhCC
Confidence 11135677777766666999887 8888888 8 8999999999987 3211 0 01112
Q ss_pred CCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHH
Q psy16512 264 QPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFD 343 (815)
Q Consensus 264 ~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~ 343 (815)
.+|++ |++|++++.-.+|++++++++++.+.+.. . . ......+.|..++.++.++++
T Consensus 258 ~~di~--s~sK~l~~G~~~G~~~~~~~~~~~~~~~~--~-~------------------~~~~t~~~~~~~~aaa~aal~ 314 (424)
T 2e7u_A 258 KPDLV--TLGKILGGGLPAAAYAGRREIMEKVAPLG--P-V------------------YQAGTLSGNPLAMAAGLATLE 314 (424)
T ss_dssp CCSEE--EECGGGGTTSSCEEEEECHHHHTTBTTTS--S-B------------------CCCCTTCSCHHHHHHHHHHHH
T ss_pred Ccchh--hhhhhhhCCcceEEEEEcHHHHhhhcccC--C-c------------------ccCCCCCCCHHHHHHHHHHHH
Confidence 47865 78899993223899999988776654310 0 0 001122456677778888888
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC---------CccCHHHHH
Q psy16512 344 TMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG---------TYYGYSEVQ 414 (815)
Q Consensus 344 ~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~---------~~~~~~~v~ 414 (815)
.+.......++..++++++.+.|+++.... +....+ ...++++.+.+..... .......+.
T Consensus 315 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~--~~~~~~--------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (424)
T 2e7u_A 315 LLEENPGYYAYLEDLGARLEAGLKEVLKEK--GLPHTV--------NRVGSMITVFFTEGPVVTFQDARRTDTELFKRFF 384 (424)
T ss_dssp HHHHCTHHHHHHHHHHHHHHHHHHHHHHHT--TCCCEE--------EEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhC--CCceEE--------EeeceEEEEEEeCCCCcchhhhcccCHHHHHHHH
Confidence 776532233888889999999887751000 111111 1236788887753110 001123577
Q ss_pred HhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 415 NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 415 ~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
+.|.++||.++++.. ..+|++ ...+++++++++++|+++
T Consensus 385 ~~l~~~Gv~v~~~~~---------------------------------------~~~~~~--~~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 385 HGLLDRGIYWPPSNF---------------------------------------EAAFLS--VAHREEDVEKTLEALRKA 423 (424)
T ss_dssp HHHHTTTEECCSSSS---------------------------------------SCEECC--TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCeEEeccCC---------------------------------------CceEee--ccCCHHHHHHHHHHHHHh
Confidence 777789999986521 236665 567999999999999875
Q ss_pred H
Q psy16512 495 F 495 (815)
Q Consensus 495 ~ 495 (815)
+
T Consensus 424 l 424 (424)
T 2e7u_A 424 L 424 (424)
T ss_dssp C
T ss_pred C
Confidence 3
No 228
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.66 E-value=4.3e-15 Score=168.22 Aligned_cols=327 Identities=13% Similarity=0.065 Sum_probs=194.6
Q ss_pred hhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchh
Q psy16512 62 ICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATS 135 (815)
Q Consensus 62 ~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~ 135 (815)
..|+|.... +..++.+.+++.+.+.... +. ....+. .+++.+++++.++ +.+. |+|++|+++
T Consensus 57 ~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~----~~-~~~~~~----~~~la~~l~~~~~-~~~~--v~~~~gg~e 124 (453)
T 2cy8_A 57 NVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGV----QY-AASHPL----EVRWAERIVAAFP-SIRK--LRFTGSGTE 124 (453)
T ss_dssp CEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTC----SS-CSSCHH----HHHHHHHHHHHCT-TCSE--EEEESCHHH
T ss_pred CEEEECcccHhhcccCCCCHHHHHHHHHHHHhCC----CC-CCCCHH----HHHHHHHHHhhCC-CCCE--EEEeCCHHH
Confidence 456665432 2356788888877765321 11 112223 5677778888776 4554 999999999
Q ss_pred hHHHHHhh---hccCCCcEEEecCCCcchhh-HHHHhhc-------cc--------eEEcCchhhhcchhhhhhhhhhhh
Q psy16512 136 AIKTVSEY---FEFNEGSFIYLTDNHTSVLG-MRELVKT-------NQ--------IYSFSVDDARNMLNEFKESQENVE 196 (815)
Q Consensus 136 al~~~~~a---l~~~~gdvv~~~~~h~s~~~-~~~~~~~-------~g--------~v~~~~~~~~~~~~~~~~l~~~~~ 196 (815)
|+.+++.+ +. +++++|+....|+.... ....... .| .+.+.. .+++.++++++
T Consensus 125 A~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~d~~~le~~l~---- 196 (453)
T 2cy8_A 125 TTLLALRVARAFT-GRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP---DDIEGMREVFA---- 196 (453)
T ss_dssp HHHHHHHHHHHHH-CCCEEEEECC----------------------------CGGGEEEECT---TCHHHHHHHHH----
T ss_pred HHHHHHHHHHHhh-CCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC---CCHHHHHHHHH----
Confidence 99999988 65 55667777765543222 1111100 11 111111 24455555442
Q ss_pred hcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCC------CCCCCCc
Q psy16512 197 NMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLD------LKQHQPD 266 (815)
Q Consensus 197 ~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~d------l~~~~~D 266 (815)
...+++++|+++.++|+||.+.| +++|.++|+ +||+++|+|+++. |. ... .....+|
T Consensus 197 ~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~-----------~~g~~lI~DEv~~-g~-~~g~~~~~~~~~~~~d 263 (453)
T 2cy8_A 197 NHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELAR-----------QYGALFILDEVIS-GF-RVGNHGMQALLDVQPD 263 (453)
T ss_dssp HHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHH-----------HTTCEEEEECTTT-TT-TTCTTHHHHHHTCCCS
T ss_pred hcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEecCcc-cc-ccCchhhhHHhCCCCc
Confidence 11135788888888888999888 888999999 8999999999987 33 111 0123468
Q ss_pred EEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH-H
Q psy16512 267 FISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT-M 345 (815)
Q Consensus 267 ~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~-l 345 (815)
++ |++|++++...+|++++++++++.+.+...+.. ......+.|..+.+++.++++. +
T Consensus 264 i~--s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~-------------------~~~~t~~~n~~~~aa~~aal~~~~ 322 (453)
T 2cy8_A 264 LT--CLAKASAGGLPGGILGGREDVMGVLSRGSDRKV-------------------LHQGTFTGNPITAAAAIAAIDTIL 322 (453)
T ss_dssp EE--EEEGGGGTTSSCEEEEECHHHHTTSSSCC----------------------------CCCCHHHHHHHHHHHHHHH
T ss_pred EE--EEChhhhCCcceEEEechHHHHHHhccccCCCc-------------------eeCCCCCCCHHHHHHHHHHHHHHh
Confidence 65 778999842248999999887766543100000 0011224567777777788887 6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEec-----C-------CC---CccCH
Q psy16512 346 EKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLH-----K-------DG---TYYGY 410 (815)
Q Consensus 346 ~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~-----~-------~~---~~~~~ 410 (815)
. ....++.+++++++.+.|+++... .+....+. ..+.++.+.+.. . +. .....
T Consensus 323 -~-~~~~~~~~~~~~~l~~~L~~~~~~--~~~~~~~~--------~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (453)
T 2cy8_A 323 -E-DDVCAKINDLGQFAREAMNHLFAR--KGLNWLAY--------GRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMI 390 (453)
T ss_dssp -H-TTHHHHHHHHHHHHHHHHHHHHHH--TTCCEEEE--------CCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHH
T ss_pred -h-hhHHHHHHHHHHHHHHHHHHHHhh--CCCcEEEE--------EeeeEEEEEEeccccccccccccccccccccHHHH
Confidence 2 223388888999999888765100 01111121 236788888763 1 00 00112
Q ss_pred HHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHH
Q psy16512 411 SEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSF 490 (815)
Q Consensus 411 ~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~ 490 (815)
.++.+.|.++||.++++ +.+|++ ...+++++++++++
T Consensus 391 ~~l~~~l~~~Gv~v~~~-----------------------------------------~~~~l~--~~~t~~~i~~~l~~ 427 (453)
T 2cy8_A 391 AAMRMALILEGVDIGGR-----------------------------------------GSVFLS--AQHEREHVEHLVTT 427 (453)
T ss_dssp HHHHHHHHHTTEECBTT-----------------------------------------TEEECC--TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCeEEeCC-----------------------------------------CCEEee--ccCCHHHHHHHHHH
Confidence 35777777889988421 236665 56799999999999
Q ss_pred HHHHHhh
Q psy16512 491 LNQYFLQ 497 (815)
Q Consensus 491 L~~~~~~ 497 (815)
|++++.+
T Consensus 428 l~~~l~~ 434 (453)
T 2cy8_A 428 FDRVLDR 434 (453)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988654
No 229
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.64 E-value=3.5e-15 Score=165.95 Aligned_cols=334 Identities=13% Similarity=0.053 Sum_probs=196.5
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc-CC--CCCceeEEecCCchhhHHH
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF-NT--DSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~-g~--~~~~~~iv~t~g~t~al~~ 139 (815)
+|.|..+.++..+.|.++....+... . .+. +..... +.++|+.+++++ |- +.+....+-|.|+|.|+..
T Consensus 53 ~y~d~~g~~~vl~~Vk~A~~~~~~~~-~--~~~-Y~p~~G----~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~ 124 (420)
T 4h51_A 53 AYRDEQGRPYPLRVVRKAEQLLLDMN-L--DYE-YLPISG----YQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSL 124 (420)
T ss_dssp CCBCTTSCBCCCHHHHHHHHHHHHTT-C--CCC-CCCTTC----CHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHhcCC-C--CCC-CCCcCC----hHHHHHHHHHHhcCCCccccccceeeecCchHHHHH
Confidence 66777777777777777664433321 1 111 222233 678888888864 32 2222234558899988876
Q ss_pred HHhhhc---cCCCc-EEEecCCCcchhhHHHHhhccc--eEEcCch--hhhcchhhhhhhhhhhhhcCCCccEEEEeccc
Q psy16512 140 VSEYFE---FNEGS-FIYLTDNHTSVLGMRELVKTNQ--IYSFSVD--DARNMLNEFKESQENVENMRHSNSLFVYPAES 211 (815)
Q Consensus 140 ~~~al~---~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v~~~~~--~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~ 211 (815)
++..+. ..+|| |+++++.++++..+.+.++... ..+.... ...+.+...+.+. ...+++++++++.++
T Consensus 125 a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~----~~~~~~~vll~~~p~ 200 (420)
T 4h51_A 125 GAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDIL----AAPDGSVFILHQCAH 200 (420)
T ss_dssp HHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHH----HSCSSCEEEEESSSC
T ss_pred HHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeeccccccccCCCHHHHHHHHh----ccCCCcEEEEeCCCC
Confidence 665443 17899 9999999998887777776543 2222222 2334444443332 345678899999999
Q ss_pred CCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccC-CCCCC---------CCCCCCcEEEEccccccccCCc
Q psy16512 212 NFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG-SNMLD---------LKQHQPDFISISFYKMFGYPTG 281 (815)
Q Consensus 212 n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g-~~~~d---------l~~~~~D~vv~S~~K~~g~p~G 281 (815)
||||..++.+++.++++ .|++++++++.|.++.-- ....+ ......-+++.||+|.|+ .+|
T Consensus 201 NPtG~~~~~~~~~~i~~--------~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~G 271 (420)
T 4h51_A 201 NPTGVDPSQEQWNEIAS--------LMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMG-LYS 271 (420)
T ss_dssp TTTCCCCCHHHHHHHHH--------HHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC-CGG
T ss_pred CCCCCCCCHHHHHHHHH--------HHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccc-ccc
Confidence 99999999887666655 344899999999886421 11000 011123477889999999 667
Q ss_pred --ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH--H----HhhhhhH-
Q psy16512 282 --LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT--M----EKKRKSF- 352 (815)
Q Consensus 282 --~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~--l----~~~~~~~- 352 (815)
+|++++..+..+......... ....+....+++..+..++...+.. + ...-..+
T Consensus 272 ~RvG~~~~~~~~~~~~~~~~~~l-----------------~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~ 334 (420)
T 4h51_A 272 ERAGTLSLLLKDKTKRADVKSVM-----------------DSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMA 334 (420)
T ss_dssp GCEEEEEEECSCHHHHHHHHHHH-----------------HHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred CceEEEEecccCHHHHHHHHHHH-----------------HHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 899998776544321111000 0001222334555555555444431 1 1111223
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCc-EEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCC
Q psy16512 353 TNAFELSQYTYFYFKQLSYSNGQPL-VELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCN 431 (815)
Q Consensus 353 ~~~~~l~~~l~~~L~~l~~~~~~p~-~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~ 431 (815)
+++.+.++.+.+.|.++. .++ +..+.+ +++++++ .+. +.. ..+.|.++||.+.++
T Consensus 335 ~r~~~~R~~l~~~L~~~g----~~~~~~~i~~--------q~GmF~~--~gl-----s~e-~v~~L~e~~Vy~~~~---- 390 (420)
T 4h51_A 335 ERIRTMRRTVYDELLRLQ----TPGSWEHVIN--------QIGMFSF--LGL-----SKA-QCEYCQNHNIFITVS---- 390 (420)
T ss_dssp HHHHHHHHHHHHHHHHTT----CSSCCTHHHH--------CCSSEEE--CCC-----CHH-HHHHHHHTTEECCTT----
T ss_pred HHHHHHHHHHHHHHHHhC----CCCCCCeecC--------CCceEEe--cCc-----CHH-HHHHHHhCCEEEcCC----
Confidence 778888999999998761 111 111211 2344333 222 222 346778899876432
Q ss_pred chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 432 PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 432 ~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
| |||+.. -+++.|++++++|.+++++-
T Consensus 391 -------------------------------------g--Ris~Ag-l~~~ni~~~a~aI~~vvr~i 417 (420)
T 4h51_A 391 -------------------------------------G--RANMAG-LTHETALMLAQTINDAVRNV 417 (420)
T ss_dssp -------------------------------------C--EEEGGG-CCHHHHHHHHHHHHHHHC--
T ss_pred -------------------------------------C--EEEecc-CCHHHHHHHHHHHHHHHHHh
Confidence 3 999864 36899999999999988653
No 230
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.58 E-value=4e-15 Score=164.39 Aligned_cols=168 Identities=11% Similarity=-0.032 Sum_probs=121.0
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccC---CCc-EEEecCCCcchhhHHHHhhccc-eEEc---Cc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFN---EGS-FIYLTDNHTSVLGMRELVKTNQ-IYSF---SV 178 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~---~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~---~~ 178 (815)
.+.+..++.+++|.+.. +..++++|+|.++.+++.+.... +++ +|++...|.|+.....+++... +++. +.
T Consensus 100 e~~~~~~~~~~lGlp~~-~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~~~~~~ 178 (450)
T 3bc8_A 100 TNSLVLNVIKLAGVHSV-ASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGD 178 (450)
T ss_dssp HHHHHHHHHHHHTCTTC-CEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETT
T ss_pred HHHHHHHHHHhCCCCCC-ceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEeeecCc
Confidence 66788899999998654 35689999985555454444312 266 8889999999998888876554 3322 44
Q ss_pred hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCC
Q psy16512 179 DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNML 258 (815)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~ 258 (815)
...++++.++++|++ .....+.+|+.+..++.+|.+.|+++|+++|+ ++|+++|||+||+.-....
T Consensus 179 ~~~id~~~le~aI~~---~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~-----------~~gi~l~VD~A~G~~~~~~ 244 (450)
T 3bc8_A 179 ELRTDLKAVEAKIQE---LGPEHILCLHSTTACFAPRVPDRLEELAVICA-----------NYDIPHVVNNAYGLQSSKC 244 (450)
T ss_dssp EEECCHHHHHHHHHH---HCGGGEEEEEEESSCCTTBCCCCHHHHHHHHH-----------HHTCCEEEECTTTTTCHHH
T ss_pred cCCcCHHHHHHHHHh---cCCCCEEEEEEECCcCCCceecCHHHHHHHHH-----------HCCCeEEEECCCchhhhhh
Confidence 456788888887642 11123455555555555679999999999999 8999999999998643211
Q ss_pred -CC--C--C-CCCcEEEEccccccccCCcceEEEEec
Q psy16512 259 -DL--K--Q-HQPDFISISFYKMFGYPTGLGALIVKQ 289 (815)
Q Consensus 259 -dl--~--~-~~~D~vv~S~~K~~g~p~G~G~l~~~~ 289 (815)
++ . . .++|+++.|.|||++.|.|.+++++++
T Consensus 245 ~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd 281 (450)
T 3bc8_A 245 MHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFN 281 (450)
T ss_dssp HHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESC
T ss_pred HhHHHHHhcccCCCEEEECCccCCCchhccEEEEecC
Confidence 01 1 1 268999999999999999999999864
No 231
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.55 E-value=1.4e-13 Score=148.91 Aligned_cols=335 Identities=13% Similarity=0.109 Sum_probs=205.6
Q ss_pred ccccchhhHHHHHHHHhhc-cccCCCChhhhhhhhhhhHH-HHHHHHHhHcCCCCCceeE-EecCCchhhHHHHHhhhcc
Q psy16512 70 AGVYSQSQMNQTIEQLKEN-IFSHPHGNSVLSDFCVSEID-QMRTKILQYFNTDSDHYSV-IFTSGATSAIKTVSEYFEF 146 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~~-~~~np~s~~~~~~~~~~~~~-~~r~~la~~~g~~~~~~~i-v~t~g~t~al~~~~~al~~ 146 (815)
....++.+++++..-+.+. ..+.|...+...-....+++ -+.++.+++||++...|.| |-..+++.|+..+..++.
T Consensus 63 EN~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All- 141 (490)
T 3ou5_A 63 ENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL- 141 (490)
T ss_dssp CCCCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC-
T ss_pred CCcCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHc-
Confidence 4456778888776655543 23456654222211122233 4677888999999875433 445677889999999999
Q ss_pred CCCc-EEEecCCCcchh--hH-H--HHhhccc------eEEcCc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCC
Q psy16512 147 NEGS-FIYLTDNHTSVL--GM-R--ELVKTNQ------IYSFSV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESNF 213 (815)
Q Consensus 147 ~~gd-vv~~~~~h~s~~--~~-~--~~~~~~g------~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~ 213 (815)
+||| |+..+..|...+ +. . ......| .+.+++ ++.+|.+.+++... ..++++|+.-.-.
T Consensus 142 ~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~------~~kPklIi~G~Sa-- 213 (490)
T 3ou5_A 142 QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTAR------LFRPRLIIAGTSA-- 213 (490)
T ss_dssp C-CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHH------HHCCSEEEECCSS--
T ss_pred CCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHh------hcCCCeEEECCcc--
Confidence 9999 665554433211 11 0 0111111 223443 35678888776432 2468999986533
Q ss_pred CccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC-----CCCCCCCCCCcEEEEccccccccCCcceEEEEe
Q psy16512 214 SGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS-----NMLDLKQHQPDFISISFYKMFGYPTGLGALIVK 288 (815)
Q Consensus 214 tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~-----~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~ 288 (815)
.-..+|.+++.++|+ +.|+++++|.+|.+|. .|-++. .+|++++|.||+|.+|.| |+++.+
T Consensus 214 Y~r~id~~~~reIAd-----------~vGA~Lm~DmAHiaGLVA~g~~psP~~--~ADvVTtTTHKTLrGPrG-G~Il~~ 279 (490)
T 3ou5_A 214 YARLIDYARMREVCD-----------EVKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGARS-GLIFYR 279 (490)
T ss_dssp CCSCCCHHHHHHHHH-----------HHTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSSTTCSCSC-EEEEEE
T ss_pred CccccCHHHHHHHHh-----------hcccEEEechhhhhhhhcccccCCccc--cceEEeccccccccCCCc-eEEEec
Confidence 346789999999999 8899999999998753 333332 379999999999998985 788877
Q ss_pred ccccc---------------ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH-HhhhhhH
Q psy16512 289 QKSAH---------------VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM-EKKRKSF 352 (815)
Q Consensus 289 ~~~~~---------------~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l-~~~~~~~ 352 (815)
++... ++....|-| .-|.+..+.++|...++... ...+..+
T Consensus 280 ~~~~~~~~k~~~~~~~~~~kkin~aVFPg-----------------------~qggp~~h~IAAkAVaf~Ea~~p~fk~Y 336 (490)
T 3ou5_A 280 KGVKAVDPKTGREIPYTFEDRINFAVFPS-----------------------LQGGPHNHAIAAVAVALKQACTPMFREY 336 (490)
T ss_dssp CSEEEECC--CCEEECCCHHHHHHHHTTT-----------------------TCSSCCHHHHHHHHHHHHHHHSHHHHHH
T ss_pred cccccccccccchhHHHHHHHHHhhcCcc-----------------------ccccchHHHHHHHHHHHHHHHhHhHHHH
Confidence 75321 111111111 12456667777777777653 3344455
Q ss_pred -HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCC
Q psy16512 353 -TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCN 431 (815)
Q Consensus 353 -~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~ 431 (815)
+++.++++.|.+.|.+. |+++++... ..+++.+.+... .++..++.+.|.+.||.+..-....
T Consensus 337 a~qVv~NAkaLA~~L~~~-------G~~vvsGgT------dnHlvLvDl~~~---g~tG~~ae~~Le~agItvNkN~iP~ 400 (490)
T 3ou5_A 337 SLQVLKNARAMADALLER-------GYSLVSGGT------DNHLVLVDLRPK---GLDGARAERVLELVSITANKNTCPG 400 (490)
T ss_dssp HHHHHHHHHHHHHHHHHT-------TCEEGGGSC------SSSEEEEECGGG---TCCHHHHHHHHHHTTEECEEECCTT
T ss_pred HHHHHHHHHHHHHHHHhC-------CCeeecCCC------CceEEEEecccc---CCCHHHHHHHHHHcCcEECCCCCCC
Confidence 88999999999999987 899985432 357777776532 1344568899999999875321110
Q ss_pred chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC----CCHHHHHHHHHHHHHHHh
Q psy16512 432 PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA----SNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 432 ~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~----~t~edi~~lv~~L~~~~~ 496 (815)
| -....++.|||..... -.++|++.+.+.|.+.+.
T Consensus 401 -----------------------------D-~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 401 -----------------------------D-RSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp -----------------------------C-CCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred -----------------------------C-CCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 0 0011246799986532 367999999999988765
No 232
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.49 E-value=6.8e-13 Score=144.29 Aligned_cols=317 Identities=12% Similarity=0.020 Sum_probs=188.8
Q ss_pred HHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccC--CC-c-EEEecCCCcchhhHHHHhhccc-eEEc---Cchhh
Q psy16512 110 MRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFN--EG-S-FIYLTDNHTSVLGMRELVKTNQ-IYSF---SVDDA 181 (815)
Q Consensus 110 ~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~--~g-d-vv~~~~~h~s~~~~~~~~~~~g-~v~~---~~~~~ 181 (815)
+.++|+++ |.+... ..++++|+|.++.+++.+.... +| + ||++...|-|++....+++... +++. +....
T Consensus 122 ~ld~L~~~-G~~~~~-~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~~~~ 199 (501)
T 3hl2_A 122 VLDIIKLA-GVHTVA-NCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELR 199 (501)
T ss_dssp HHHHHHHT-TCTTCC-EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEEETTEEE
T ss_pred HHHHHHHc-CCCCCC-cEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeeecccccC
Confidence 44445444 887543 5788999997777776666522 23 6 9999999999998888876665 3332 22345
Q ss_pred hcchhhhhhhhhhhhhcCCCc-cEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCC--
Q psy16512 182 RNMLNEFKESQENVENMRHSN-SLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNML-- 258 (815)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~t-~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~-- 258 (815)
++++.++++|++ . .... .+|+.+..+|..|.+.|+++|+++|+ ++|++++||+||++-....
T Consensus 200 id~e~le~aI~e---~-ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch-----------~~gIpllVDeAhGah~~~~~~ 264 (501)
T 3hl2_A 200 TDLKAVEAKVQE---L-GPDCILCIHSTTSCFAPRVPDRLEELAVICA-----------NYDIPHIVNNAYGVQSSKCMH 264 (501)
T ss_dssp ECHHHHHHHHHH---H-CGGGEEEEEEECSCCTTBCCCCHHHHHHHHH-----------HHTCCEEEECTTCTTCHHHHH
T ss_pred CCHHHHHHHHHh---c-CCCcEEEEEecCCCCCCcccccHHHHHHHHH-----------HcCCeEEEeCcchhhhhhhhh
Confidence 677777776641 1 2233 34444444444567799999999999 8999999999987643111
Q ss_pred ---CCCCCC-CcEEEEccccccccCCcceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChh
Q psy16512 259 ---DLKQHQ-PDFISISFYKMFGYPTGLGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYL 333 (815)
Q Consensus 259 ---dl~~~~-~D~vv~S~~K~~g~p~G~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 333 (815)
..-.++ +|+++.|.||++..|.|.|+++.++ +.++.+...+ +|+.+..
T Consensus 265 lp~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~~y---------------------------PGr~S~S 317 (501)
T 3hl2_A 265 LIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMY---------------------------PGRASAS 317 (501)
T ss_dssp HHHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHHTS---------------------------CSCBCSH
T ss_pred hHHHHHhcCCCcEEEecccccceeecCceEEEeCCHHHHHHHHHhC---------------------------CCCCCCc
Confidence 111235 9999999999988787866666665 3444432222 2333333
Q ss_pred HHHHHHHHHHHHHhhhh-hH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC-ccCH
Q psy16512 334 AIISLKYGFDTMEKKRK-SF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT-YYGY 410 (815)
Q Consensus 334 ~~~al~~al~~l~~~~~-~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~-~~~~ 410 (815)
..+.+..++..+...+. .+ ++..+++++|.+.|+++..-. +-+++.... ..--+++.+...... .-..
T Consensus 318 psldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~---ge~ll~~~~------n~is~a~tl~~~~~~~~~~~ 388 (501)
T 3hl2_A 318 PSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAY---NERLLHTPH------NPISLAMTLKTLDEHRDKAV 388 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TCCBCCCTT------CSSEEEEECTTSCTTTSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ChhhcCCCC------CceeEEEecccccccccccH
Confidence 44434344444433322 22 888999999999998873211 223332221 122334444332111 1112
Q ss_pred HHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCccc----ccCCCCceEEEEeccCCCCHHHHHH
Q psy16512 411 SEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKD----IIDGKPTGSIRISYGHASNWDDVKY 486 (815)
Q Consensus 411 ~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~----~~~~~~~g~iRvs~g~~~t~edi~~ 486 (815)
..+-.+|-.++|.-.-...+ +..+ .+||-++. -.+.++..|+-+....-.+.+|||.
T Consensus 389 t~~gs~Lf~r~vsG~Rvv~~--~~~~-----------------~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~ 449 (501)
T 3hl2_A 389 TQLGSMLFTRQVSGARVVPL--GSMQ-----------------TVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDL 449 (501)
T ss_dssp HHHHHHHHHTTCCSCEEECT--TCCE-----------------EETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHH
T ss_pred HHHHHHHHhcCCCcceeecC--CCce-----------------EECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHH
Confidence 34666676666541110000 0000 11111111 1235667899999888899999999
Q ss_pred HHHHHHHHHhhc
Q psy16512 487 FLSFLNQYFLQQ 498 (815)
Q Consensus 487 lv~~L~~~~~~~ 498 (815)
|++.|++++..-
T Consensus 450 ~~~~l~~~~~~~ 461 (501)
T 3hl2_A 450 FIKRLDRCLKAV 461 (501)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987543
No 233
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.04 E-value=7.3e-14 Score=157.15 Aligned_cols=333 Identities=9% Similarity=-0.005 Sum_probs=194.6
Q ss_pred cchhhhhhhhccc------ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCC
Q psy16512 59 LKDICYLDYTGAG------VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSG 132 (815)
Q Consensus 59 ~~~~iyLd~a~~~------~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g 132 (815)
.++..|+|..+.- --++.+.+++.+++.... + ....... ..++.++|+++++ ..+. ++|+++
T Consensus 97 ~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~----~-~~~~~~~----~~~Lae~L~~~~p-~~~~--v~~~nS 164 (465)
T 2yky_A 97 VDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGL----N-LSTQTEN----EALFAEAVCDRFP-SIDL--VRFTNS 164 (465)
Confidence 3456677765422 235778888777655311 0 0111122 6678889999985 3344 999999
Q ss_pred chhhHHHHHhhhcc-CCCc-EEEecCCCcc-hhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEE
Q psy16512 133 ATSAIKTVSEYFEF-NEGS-FIYLTDNHTS-VLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLF 205 (815)
Q Consensus 133 ~t~al~~~~~al~~-~~gd-vv~~~~~h~s-~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv 205 (815)
+++|+..++..+.. ..++ ||.....|.. ......-....| .+.++. .+++.++++++ ...+++++|
T Consensus 165 GseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~---~d~~~l~~~l~----~~~~~~aav 237 (465)
T 2yky_A 165 GTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY---NDVEGTADLLK----RHGHDCAAI 237 (465)
Confidence 99999999887531 2334 7776655433 322220000111 111111 24445554332 112568899
Q ss_pred EEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccccCCCC--CCCCC--CCCcEEEEccccccc
Q psy16512 206 VYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM--LDLKQ--HQPDFISISFYKMFG 277 (815)
Q Consensus 206 ~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~--~dl~~--~~~D~vv~S~~K~~g 277 (815)
++..+++++|.+.| +++|.++|+ ++|+++|+|+++. +... ..... ..+|++ |++|++|
T Consensus 238 i~epv~~~~G~~~~~~~~l~~l~~l~~-----------~~g~llI~DEv~~-~r~g~~~a~~~~gv~pDi~--t~sK~lg 303 (465)
T 2yky_A 238 LVEPMLGAGGCVPAERAFLDLLRAEAS-----------RCGALLIFDEVMT-SRLSGGGAQEMLGISADLT--TLGKYIG 303 (465)
Confidence 99887777998887 778888888 9999999999998 4211 11111 236654 7889999
Q ss_pred cCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHH
Q psy16512 278 YPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFE 357 (815)
Q Consensus 278 ~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~ 357 (815)
+.-.+|++++++++++.+.+...+... .....+.|.++.+++.++++.+.+. ...++..+
T Consensus 304 ~G~piG~v~~~~~i~~~l~~~~~g~~~-------------------~~~T~~~npla~aAa~aaL~~l~~~-~~~~~~~~ 363 (465)
T 2yky_A 304 GGMSFGAFGGRRDLMERFDPARDGAFA-------------------HAGTFNNNILTMSAGHAALTQIYTR-QAASDLSA 363 (465)
Confidence 311279999999887766441000000 0011134556666777778777553 22388888
Q ss_pred HHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC---------CccCHHHHHHhhhcCCcEeccCc
Q psy16512 358 LSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG---------TYYGYSEVQNLANLKKIQLRTGC 428 (815)
Q Consensus 358 l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~---------~~~~~~~v~~~l~~~gI~v~~g~ 428 (815)
+.+++.+.|+++.. ...+... ....+.++.+.+.+... ..-....+.+.|.++||.+.++.
T Consensus 364 ~~~~l~~~L~~~~~-----~~~~~~~-----v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~ 433 (465)
T 2yky_A 364 SGDRFRANLNRIAV-----ENQAPLQ-----FTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRG 433 (465)
Confidence 88888888877510 1111111 12347788877653110 00012246667778999887542
Q ss_pred cCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 429 HCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 429 ~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
+ +. + ++..|++||++++++|++++.+
T Consensus 434 ~---------------------------------------~~--~--s~~~t~edid~~l~~l~~~l~~ 459 (465)
T 2yky_A 434 M---------------------------------------YA--L--SLEIADAGRDAFAEALADFIGE 459 (465)
Confidence 1 11 3 3456899999999999987643
No 234
>1oru_A YUAD protein; structural genomics, cytosolic hypothetical protein, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.80A {Bacillus subtilis} SCOP: b.58.1.2
Probab=99.34 E-value=2.7e-12 Score=126.38 Aligned_cols=159 Identities=10% Similarity=0.058 Sum_probs=114.1
Q ss_pred CccEEeeeeeccccccCceeeccEEEEEecCCCcCcEEEE-EeCCCceEEeccccccccccceeecCCCeEEEEeCCCCe
Q psy16512 531 KENKLVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMI-ITHSGVPLTQKLEKNLCLVQPNFDITRNIMTLCYKSSGS 609 (815)
Q Consensus 531 ~~~~v~~l~~yPvKs~~g~~~~~~~~~~~~Gl~~DR~~~~-~~~~~~~~t~~~~p~l~~i~~~~~~~~~~l~l~~~~~~~ 609 (815)
..++|.+||++|.|+...+.++ ++.++..||++||.+.. ....|+ . .. .|++.
T Consensus 8 ~~g~v~~v~~~~~~g~~k~~v~-~~~l~~~Gl~GD~~~g~~~~hggr------~--------~~----------~p~gt- 61 (195)
T 1oru_A 8 MTAKAEGLYIADTKSFVTKQMD-KLDFDYGGIPGDLHFGLTKKAGAR------E--------PM----------FSRGT- 61 (195)
T ss_dssp EEEEEEEEEECCSSCSSCEEES-EEEEBTTBSTTSTTCSSEEECCTT------S--------TT----------SCTTC-
T ss_pred ceeEEEEEEeCCCCCccceecC-cEEEecCCcCCccccCcccCCCcc------c--------cc----------CCccc-
Confidence 3578999999999999999999 99999999999996532 222221 0 00 11110
Q ss_pred eEEEecCCCCCceeeeEEeCCceeeeecchhHHHHHHHhcCCCCeEEEEecCCCCCCcccccccccceeeecHHhHHHHH
Q psy16512 610 TVEIGIDNEGLDLCTSKVCSDKITGFDCGNAVANWLDEQLNRKGLRLIRISKRSSKRNINSFSNMGQYLLITLPSIQAQL 689 (815)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ls~~lg~~~~~L~~~~~~~~~~~~~~f~d~~p~~l~s~~Sl~~l~ 689 (815)
...+..+++|++.+|++.++
T Consensus 62 ------------------------------------------------------------~~~~~r~V~l~~~e~~~~~~ 81 (195)
T 1oru_A 62 ------------------------------------------------------------EIFNRRQISIVSIEECNEIA 81 (195)
T ss_dssp ------------------------------------------------------------EEECCCCEEEEEHHHHHHHH
T ss_pred ------------------------------------------------------------cCCCCceEEECCHHHHHHHH
Confidence 01234569999999999999
Q ss_pred HHhhhhcCcccccccccceEEEcCCCCcc-cCCCcceEEEecCCCC-eEEEecccCCCcccc--ccCccCCCCCCChhHH
Q psy16512 690 ENLNAIFELENFVNRFRSNFVVSGQFEAN-AENDWDQVLIETNDGL-LSFQVTSQCTRCQYI--YIDQETALNTDVPLGE 765 (815)
Q Consensus 690 ~~l~~~~~~~~~~~rFRpNivi~~~~~~~-~Ed~w~~i~Ig~~~~~-~~~~~~~~~~RC~~~--~vd~~tg~~~~~~l~~ 765 (815)
+.++.+ .+++.|||+||+++|. +.+ +.+-|++++|| + +.|+|+.+|.||..+ ++++.++. .+...+.
T Consensus 82 ~~~g~~---~l~~g~fgeNl~v~Gi-~~~~~l~iG~~l~iG----~~a~leVt~~~~pC~~~~~~i~~~~~~-~~g~~~~ 152 (195)
T 1oru_A 82 LKMGVP---RILPEWLGANVAVSGM-PDLTSLKEGSRIIFP----SGAALLCEGENDPCIQPGEVIQSYYPD-QPKLASA 152 (195)
T ss_dssp HHHTCS---CCCGGGGTCSEEEESC-TTGGGCCTTCEEECT----TSCEEEEEEECCCCHHHHHHHHHHSTT-STTHHHH
T ss_pred HHcCCC---CCCcccccCCEEEeCC-CChhhCCCCCEEEEC----CCEEEEEeeccCCCCCCccccchhccc-ccchHHH
Confidence 987531 3789999999999998 444 44457999999 7 999999999999985 56765532 3456666
Q ss_pred HHhccccccccCccccccccccc
Q psy16512 766 YQTRNFSTVSLNVKEFFNNLEKT 788 (815)
Q Consensus 766 l~~~r~~~~~~~~~~~~~~~~~~ 788 (815)
+.+... ..+|+|+-+...|
T Consensus 153 ~~~~~~----~r~G~~~rVl~~G 171 (195)
T 1oru_A 153 FVRHAL----GIRGIVCIVERPG 171 (195)
T ss_dssp HHHHST----TSSCEEEEEEECE
T ss_pred HHhhcc----CCccEEEEEecCc
Confidence 665222 1457777776543
No 235
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.34 E-value=3.9e-10 Score=126.43 Aligned_cols=348 Identities=12% Similarity=0.058 Sum_probs=202.4
Q ss_pred chhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+. +--.+.+.+++.+++.... +........+. ..++.++|.+++..+.. ..++|++++
T Consensus 62 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~--~~~~~~~~~~~----~~~lae~L~~~~p~~~~-~~v~f~~sG 134 (456)
T 4atq_A 62 DGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFT--HTCFMVTPYEG----YVAVTEQLNRLTPGDHA-KRTVLFNSG 134 (456)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCS--CCTTTTSCCHH----HHHHHHHHHHHSSCSSC-EEEEEESSH
T ss_pred CCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhcc--CcccCccCcHH----HHHHHHHHHHhCCCCCC-cEEEEeCCh
Confidence 44567775432 2345788888877665421 11111111122 44566778888754322 248899999
Q ss_pred hhhHHHHHhhhcc--CCCcEEEecCCCcc-hhhHHHHhhcc-------c-------eEEcCch------hhhcchhhhhh
Q psy16512 134 TSAIKTVSEYFEF--NEGSFIYLTDNHTS-VLGMRELVKTN-------Q-------IYSFSVD------DARNMLNEFKE 190 (815)
Q Consensus 134 t~al~~~~~al~~--~~gdvv~~~~~h~s-~~~~~~~~~~~-------g-------~v~~~~~------~~~~~~~~~~~ 190 (815)
|+|++.++..... .+..+|.....|.. ........... + .+|.... ...+.+.....
T Consensus 135 sEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 214 (456)
T 4atq_A 135 AEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRA 214 (456)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHH
Confidence 9999888865532 22236666554433 33322221110 1 1222110 00111222222
Q ss_pred hhhhhhhcC-CCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEeccccc-CCCC--C--CC
Q psy16512 191 SQENVENMR-HSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC-GSNM--L--DL 260 (815)
Q Consensus 191 l~~~~~~~~-~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~-g~~~--~--dl 260 (815)
+..+..... .++.+|++.-+....|.+.| +++|.++|+ +||+++|+|+++.. |..- . ..
T Consensus 215 ~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~-----------~~gillI~DEV~tG~GRtG~~~a~e~ 283 (456)
T 4atq_A 215 ITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAK-----------EKGIVFIADEVQSGFCRTGEWFAVDH 283 (456)
T ss_dssp HHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHH-----------HHTCEEEEECTTTTTTTTSSSSGGGG
T ss_pred HHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHh-----------hcCCceEecccccccCCccccccccc
Confidence 222222222 35788999888888898877 667888888 99999999998763 2211 1 11
Q ss_pred CCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 261 KQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 261 ~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
-...||+++++ |.+|+-.-+|++++++++.+.+.+...++ ..+-|..+.++..+
T Consensus 284 ~gv~PDivt~g--K~lggg~P~~av~~~~~i~~~~~~~~~~~------------------------Tf~gnpla~aaala 337 (456)
T 4atq_A 284 EGVVPDIITMA--KGIAGGLPLSAITGRADLLDAVHPGGLGG------------------------TYGGNPVACAAALA 337 (456)
T ss_dssp TTCCCSEEEEC--GGGGTTSSCEEEEEEHHHHTTSCTTSSCC------------------------SSSSCHHHHHHHHH
T ss_pred cCCCCchhhhh--hcccCcCCceeeEecHHHHhcccccCCCC------------------------CCCCChHHHHhhHH
Confidence 12358998775 76653222799999998876664432111 11346677777778
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhcc--ccC-CCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccC---HHHHH
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLS--YSN-GQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYG---YSEVQ 414 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~--~~~-~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~---~~~v~ 414 (815)
.++.+.+.+ -.++.+++-+++.+.|+++. ++. .+|.+.-+ ...|.++.+.+.......-+ ...+.
T Consensus 338 ~L~~i~~~~-l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~V--------RG~Gl~~giel~~~~~~~~~~~~~~~v~ 408 (456)
T 4atq_A 338 AIDTMEQHD-LNGRARHIEELALGKLRELAAELSAGGGSVVGDI--------RGRGAMLAIELVQPGSKEPNAELTKAVA 408 (456)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHCC-----CEEEE--------EEETTEEEEEEBCTTSCCBCHHHHHHHH
T ss_pred HHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHhcccccCCceEEe--------eecceEEEEEEecCCCCCcCHHHHHHHH
Confidence 888877642 22777888888888777652 111 11222211 23478888888643221111 23466
Q ss_pred HhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 415 NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 415 ~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
+.+.++|+.+... |...+.||+.+.+..|+++++++++.|++.
T Consensus 409 ~~~~~~Gvl~~~~-------------------------------------g~~~~~irl~PpL~it~~~id~~l~~l~~a 451 (456)
T 4atq_A 409 AACLKEGVIILTC-------------------------------------GTYGNVIRLLPPLVISDELLIDGLEVLAAA 451 (456)
T ss_dssp HHHHHTTEECEEE-------------------------------------CTTSCEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEec-------------------------------------CCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 7778899987642 111368999999889999999999999998
Q ss_pred Hhh
Q psy16512 495 FLQ 497 (815)
Q Consensus 495 ~~~ 497 (815)
++.
T Consensus 452 l~a 454 (456)
T 4atq_A 452 IKA 454 (456)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 236
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.31 E-value=6.5e-11 Score=132.18 Aligned_cols=333 Identities=12% Similarity=0.107 Sum_probs=193.5
Q ss_pred cchhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCC
Q psy16512 59 LKDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSG 132 (815)
Q Consensus 59 ~~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g 132 (815)
.++..|+|..+. +--.+.+.+++.+++.... +... .... ..++.+.|++.+.. .+ .+.|+++
T Consensus 84 ~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~--~~~~---~~~~----~~~lae~l~~~~p~-~~--~v~f~~S 151 (454)
T 4ao9_A 84 ADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGI--NLTG---HNLL----EGRLARLICERFPQ-IE--QLRFTNS 151 (454)
T ss_dssp TTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCS--CCCS---EESS----HHHHHHHHHHHSTT-CS--EEEEESS
T ss_pred CCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCC--CccC---CcHH----HHHHHHHHHHhCCC-CC--EEEEeCc
Confidence 345678876542 2245788888888775421 1111 1122 45677788888853 33 3999999
Q ss_pred chhhHHHHHhhhcc--CCCcEEEecCCCcc-hhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEE
Q psy16512 133 ATSAIKTVSEYFEF--NEGSFIYLTDNHTS-VLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLF 205 (815)
Q Consensus 133 ~t~al~~~~~al~~--~~gdvv~~~~~h~s-~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv 205 (815)
+|+|+..++..... .+.+||.....|.. ............ ...+..+ +.+.+++.+. ...+++.+|
T Consensus 152 GsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n---d~~~l~~~l~----~~~~~iAav 224 (454)
T 4ao9_A 152 GTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN---DAQTARAQIE----RHGPEIAVV 224 (454)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT---CHHHHHHHHH----HTGGGEEEE
T ss_pred hHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCc---hHHHHHHHHh----hcCCceEEE
Confidence 99999988876542 33346666654432 221111000000 2222222 2333343332 223458899
Q ss_pred EEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCC----CCCCCcEEEEccccccc
Q psy16512 206 VYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDL----KQHQPDFISISFYKMFG 277 (815)
Q Consensus 206 ~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl----~~~~~D~vv~S~~K~~g 277 (815)
++..+....|.+.| +++|.++|+ ++|+++|+|+++. |..-.-. -...||+++ +.|.+|
T Consensus 225 IvEPv~g~~G~~~p~~~fL~~lr~lc~-----------~~g~lLI~DEV~t-GR~G~~~a~e~~gv~PDi~t--~gK~lg 290 (454)
T 4ao9_A 225 LVEPMQGASGCIPGQPDFLQALRESAT-----------QVGALLVFDEVMT-SRLAPHGLANKLGIRSDLTT--LGKYIG 290 (454)
T ss_dssp EECSEESTTTCEECCHHHHHHHHHHHH-----------HHTCEEEEECTTG-GGGSTTCHHHHHTCCCSEEE--EEGGGG
T ss_pred EeccccCCCCccCCchhhHHHHHHHHh-----------hcCCEEEEECCCc-CCCccccchhccCCCCcEEE--eccccC
Confidence 99999999999988 778889998 8999999999986 4211101 113589875 457666
Q ss_pred cCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCC--CChhHHHHHHHHHHHHHhhhhhHHHH
Q psy16512 278 YPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT--VNYLAIISLKYGFDTMEKKRKSFTNA 355 (815)
Q Consensus 278 ~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt--~~~~~~~al~~al~~l~~~~~~~~~~ 355 (815)
+...+|++.+++++.+.+.+.. + ..+..+| -|..++++..++|+.+.+. ...+++
T Consensus 291 gG~Piga~~~~~ei~~~~~~~~---~-------------------~~~h~~T~~gnPla~AAala~L~~l~~~-~~~~~~ 347 (454)
T 4ao9_A 291 GGMSFGAFGGRADVMALFDPRT---G-------------------PLAHSGTFNNNVMTMAAGYAGLTKLFTP-EAAGAL 347 (454)
T ss_dssp TTSSCEEEEECHHHHGGGCTTT---C-------------------SCCCCCTTTTCHHHHHHHHHHHHHTSCH-HHHHHH
T ss_pred CCCcceeeeeHHHHHHHHhhcc---C-------------------CccccCCCCCCHHHHHHHHHHHHHHhcc-ChhHHH
Confidence 3223799999998877664321 0 0112233 3556666666777766432 122778
Q ss_pred HHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC------ccC---HHHHHHhhhcCCcEecc
Q psy16512 356 FELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT------YYG---YSEVQNLANLKKIQLRT 426 (815)
Q Consensus 356 ~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~------~~~---~~~v~~~l~~~gI~v~~ 426 (815)
.++.++|.+.|+++....+.+ ..+ ...|.++.+.+...+.. ..+ ...+...+.++||.+.+
T Consensus 348 ~~~g~~l~~~L~~l~~~~~~~-~~v---------rg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p 417 (454)
T 4ao9_A 348 AERGEALRARLNALCANEGVA-MQF---------TGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSP 417 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHTBS-CEE---------EEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCT
T ss_pred HHHHHHHHHHHHHHHhhCCCC-EEE---------eeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcC
Confidence 888888888887652100101 111 12366777766432110 011 12344556788988754
Q ss_pred CccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhcCc
Q psy16512 427 GCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQAD 500 (815)
Q Consensus 427 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~~~ 500 (815)
. +.+.+|+. .|++|||+++++|++++..-.-
T Consensus 418 ~-----------------------------------------~~~~~s~~--~T~~dId~~l~al~~~l~~~~a 448 (454)
T 4ao9_A 418 R-----------------------------------------GFVVLSLP--LTDADIDRYVAAIGSFIGGHGA 448 (454)
T ss_dssp T-----------------------------------------CEEECCTT--CCHHHHHHHHHHHHHHHHHSGG
T ss_pred C-----------------------------------------CCEEEeCC--CCHHHHHHHHHHHHHHHHhccc
Confidence 2 44555554 5899999999999998866443
No 237
>2lj4_A Peptidyl-prolyl CIS-trans isomerase/rotamase, PUT; tbpin1; NMR {Trypanosoma brucei}
Probab=99.28 E-value=1.1e-12 Score=117.38 Aligned_cols=46 Identities=35% Similarity=0.538 Sum_probs=43.7
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeec
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE 54 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ve 54 (815)
-+||||||+.+|+|+|+|++++|.|++|+||+ ||+|+||||||++.
T Consensus 69 ~~GGdLG~~~~~~~~~~f~~a~~~l~~GeiS~------pv~t~~G~HIIkl~ 114 (115)
T 2lj4_A 69 ASGGDLGFFSSGEMMKPFEDAVRALKIGDISP------IVQTDSGLHIIKRL 114 (115)
T ss_dssp GTTSEEEEEETTSSCHHHHHHHTTSCBTCBCC------CEECSSSEEEEEEC
T ss_pred ccCCccceecCCCCCchHHHHHhcCCCCCCCC------cEEeCCeEEEEEEe
Confidence 47999999999999999999999999999998 88999999999973
No 238
>3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} SCOP: d.26.1.1 PDB: 3ui5_A 3ui6_A 1fjd_A 1eq3_A
Probab=99.28 E-value=1.3e-12 Score=114.17 Aligned_cols=54 Identities=69% Similarity=1.296 Sum_probs=51.3
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeeccc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~ 56 (815)
-+||||||+.+++|+|+|++++|.|+.|++|+|.+++.||+|+||||||+++++
T Consensus 47 ~~GGdlG~~~~~~l~~~f~~a~~~l~~G~vs~~~~~~~pv~t~~G~hIikv~~r 100 (101)
T 3ui4_A 47 RQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGR 100 (101)
T ss_dssp GGTTEEEEEETTSSCHHHHHHHHTSCCCBTTBCCBCSSCEEETTEEEEEEEEEE
T ss_pred hcCCceeeEcCCCCCHHHHHHHHhCCCCCCccCcccCCcEEECCEEEEEEEEee
Confidence 479999999999999999999999999999999888999999999999999875
No 239
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.17 E-value=2.5e-08 Score=112.22 Aligned_cols=345 Identities=13% Similarity=0.044 Sum_probs=199.7
Q ss_pred chhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+. +--.+.+.+++.+++....+.+... ....+. ..++-++|.++...+-+. |.|++++
T Consensus 65 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~~~-~~~~~~----~~~lAe~L~~~~p~~~~~--v~f~~sG 137 (473)
T 4e3q_A 65 NGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFF-GRMSDQ----TVMLSEKLVEVSPFDSGR--VFYTNSG 137 (473)
T ss_dssp TCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCCCT-TEEEHH----HHHHHHHHHHHSSCSSCE--EEEESSH
T ss_pred CCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccccccc-cccCHH----HHHHHHHHHhhCCCCccE--EEEeCch
Confidence 45667776542 3345778888877776532211110 111122 445677888887655544 9999999
Q ss_pred hhhHHHHHhhhcc------CCCc--EEEecCCC-cchhhHHHHhhc-----cc-----eE--EcCch------h----h-
Q psy16512 134 TSAIKTVSEYFEF------NEGS--FIYLTDNH-TSVLGMRELVKT-----NQ-----IY--SFSVD------D----A- 181 (815)
Q Consensus 134 t~al~~~~~al~~------~~gd--vv~~~~~h-~s~~~~~~~~~~-----~g-----~v--~~~~~------~----~- 181 (815)
|+|++.++..... +++. +|.....| ............ .+ .. +.... . .
T Consensus 138 sEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 217 (473)
T 4e3q_A 138 SEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQF 217 (473)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHH
Confidence 9999988875421 2343 56555544 333332222111 11 11 11110 0 0
Q ss_pred --hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEeccccc-C
Q psy16512 182 --RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC-G 254 (815)
Q Consensus 182 --~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~-g 254 (815)
.....+++.+ .....++..+|++.-+....|.+.| +++|.++|+ ++|+++|+|+++.. |
T Consensus 218 ~~~~~~~l~~~i---~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~-----------~~gilLI~DEV~tGfG 283 (473)
T 4e3q_A 218 VARLARELEETI---QREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILR-----------KYDIPVISDEVICGFG 283 (473)
T ss_dssp HHHHHHHHHHHH---HHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHH-----------HTTCCEEEECTTTSSS
T ss_pred HHHHHHHHHHHH---HhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhc-----------ccceEEeccCccccCC
Confidence 0011122211 2222345788999988888898877 666888888 99999999998753 2
Q ss_pred CCC--C--CCCCCCCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCC
Q psy16512 255 SNM--L--DLKQHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT 329 (815)
Q Consensus 255 ~~~--~--dl~~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 329 (815)
-.- . ..-...||++++ .|.+++- .-+|++++++++.+.+.+.....+. .. .-...+
T Consensus 284 RtG~~fa~e~~gv~PDi~t~--~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~----------------~~-hg~T~~ 344 (473)
T 4e3q_A 284 RTGNTWGCVTYDFTPDAIIS--SKNLTAGFFPMGAVILGPELSKRLETAIEAIEE----------------FP-HGFTAS 344 (473)
T ss_dssp TTSSSCHHHHTTCCCSEEEE--CGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSC----------------CC-CCCTTT
T ss_pred cccchhHHHhcCCCCChHHh--cccccCCCCCcccccccHHHHHHhccccccccc----------------cc-cCCCCC
Confidence 211 1 111235898765 5866521 1279999999887655321100000 00 000113
Q ss_pred CChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC--Cc
Q psy16512 330 VNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG--TY 407 (815)
Q Consensus 330 ~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~--~~ 407 (815)
-|..+.++..+.++.+.+. .-.++++++.++|.+.|+++.. +|.+.-+ ...|.++.+.+..... ..
T Consensus 345 Gnpla~Aaala~L~~i~~~-~l~~~~~~~g~~l~~~L~~l~~---~~~v~~v--------RG~Gl~~gielv~~~~~~~~ 412 (473)
T 4e3q_A 345 GHPVGCAIALKAIDVVMNE-GLAENVRRLAPRFEERLKHIAE---RPNIGEY--------RGIGFMWALEAVKDKASKTP 412 (473)
T ss_dssp TCHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHHTT---STTEEEE--------EEETTEEEEEECSBTTTTBC
T ss_pred CCcchhhhhhhhhhhhccc-cHHHHHHHHHHHHHHHHHHHhc---CCCeeEE--------eecceEEEEEEecCcccccc
Confidence 3566777777777777654 1228888899999999987621 1343322 2346788887753221 11
Q ss_pred cC-----HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHH
Q psy16512 408 YG-----YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWD 482 (815)
Q Consensus 408 ~~-----~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~e 482 (815)
++ ...+.+.+.++|+.+++. .+.||++..+..|++
T Consensus 413 ~~~~~~~~~~~~~~~~~~Gll~~~~----------------------------------------g~~i~l~PPL~it~~ 452 (473)
T 4e3q_A 413 FDGNLSVSERIANTCTDLGLICRPL----------------------------------------GQSVVLCPPFILTEA 452 (473)
T ss_dssp CCGGGCHHHHHHHHHHHTTEECEEE----------------------------------------TTEEEECCCTTCCHH
T ss_pred ccccHHHHHHHHHHHHHCCcEEEec----------------------------------------CCEEEEeCCCCCCHH
Confidence 11 234677788899987642 257999998889999
Q ss_pred HHHHHHHHHHHHHh
Q psy16512 483 DVKYFLSFLNQYFL 496 (815)
Q Consensus 483 di~~lv~~L~~~~~ 496 (815)
|+|.++++|.+.+.
T Consensus 453 eid~~~~~l~~al~ 466 (473)
T 4e3q_A 453 QMDEMFDKLEKALD 466 (473)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 240
>3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD, small molecule, ppiase, cell cycle, nucleus, phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens} PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A
Probab=99.12 E-value=1.7e-11 Score=110.67 Aligned_cols=47 Identities=38% Similarity=0.586 Sum_probs=44.2
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeecc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 55 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved 55 (815)
.+||||||+.+++|+|+|++++|.|++|+||+ ||+|+||||||++.+
T Consensus 77 ~~GGdLG~~~~~~l~~~f~~a~f~l~~GeiS~------pv~t~~G~hIi~v~E 123 (123)
T 3i6c_A 77 KARGDLGAFSRGQMQKPFEDASFALRTGEMSG------PVFTDSGIHIILRTE 123 (123)
T ss_dssp GGTTEEEEEETTTSCHHHHHHHHHSCTTCBCS------CEEETTEEEEEEECC
T ss_pred hhCCceeeEcCCCCCHHHHHHHHhCCCCCccc------cEEECCEEEEEEEeC
Confidence 47999999999999999999999999999998 889999999999854
No 241
>4g2p_A Chaperone SURA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, pcsep; 1.82A {Salmonella enterica subsp}
Probab=99.12 E-value=1.4e-11 Score=109.45 Aligned_cols=50 Identities=30% Similarity=0.597 Sum_probs=46.7
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeeccccc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNH 58 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~~ 58 (815)
-+||||||+.+++|+|+|++++|.|++|++|. ||+|+||||||++++++.
T Consensus 60 ~~GG~lG~~~~~~l~~~f~~a~~~l~~Geis~------pv~t~~G~hIikv~~~r~ 109 (110)
T 4g2p_A 60 NQGGDLGWATPDIFDPAFRDALTKLHKGQISA------PVHSSFGWHLIELLDTRK 109 (110)
T ss_dssp GGTTEEEEECGGGSCHHHHHHHHTCCTTCBCC------CEEETTEEEEEEEEEEEE
T ss_pred ccccccCeecccccCHHHHHHHHcCCCCCcCc------cEEECCEEEEEEEEEEec
Confidence 46999999999999999999999999999998 889999999999988753
No 242
>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A
Probab=99.10 E-value=1.9e-11 Score=105.17 Aligned_cols=48 Identities=40% Similarity=0.664 Sum_probs=45.4
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeeccc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~ 56 (815)
-+||||||+.+++|+|+|++++|.|++|++|+ ||+|+||||||++.++
T Consensus 44 ~~gGdlg~~~~~~l~~~f~~a~~~l~~G~is~------pv~t~~G~hIi~v~~~ 91 (92)
T 1jns_A 44 KRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTG------PLHTQFGYHIIKVLYR 91 (92)
T ss_dssp TTGGGCCEEETTSSCHHHHHHHHHSCTTCCEE------EEEETTEEEEEEEECC
T ss_pred hcCCeeeEEcCcccCHHHHHHHHhCCCCCcCC------cEEECCEEEEEEEEee
Confidence 47999999999999999999999999999998 8899999999999775
No 243
>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, 11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans}
Probab=99.09 E-value=1.6e-11 Score=109.01 Aligned_cols=52 Identities=21% Similarity=0.460 Sum_probs=48.1
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeeccccccc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNHLK 60 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~~~~ 60 (815)
-+||||||+.+++|+|+|++++|.|++|+||+ ||+|+||||||++.+.++..
T Consensus 56 ~~GGdlG~~~~~~l~~~f~~a~~~l~~GeiS~------pv~t~~G~hIikv~~~~~~~ 107 (112)
T 3gpk_A 56 AVGGDLGWIRLAQLPTELATTAASMGPGQLAG------PVEIRGGFSILYLIDKREGH 107 (112)
T ss_dssp GGTTEEEEECGGGSCHHHHHHHHHCCTTCEEE------EEEETTEEEEEEEEEEECCS
T ss_pred hcCcccceEcccccCHHHHHHHHhCCCCCccc------eEEECCEEEEEEEEeEeccc
Confidence 47999999999999999999999999999998 88999999999999886643
No 244
>2rqs_A Parvulin-like peptidyl-prolyl isomerase; CIS/trans isomerisation, cenarcheaum symbiosum, low temperat NIMA-kinase, PIN1, cell cycle; NMR {Cenarchaeum symbiosum}
Probab=99.05 E-value=7.8e-11 Score=102.32 Aligned_cols=47 Identities=47% Similarity=0.875 Sum_probs=44.2
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeecc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 55 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved 55 (815)
-+||||||+.+++|+|+|++++|.|++|++|+ ||+|+||||||++.+
T Consensus 51 ~~GG~lG~~~~~~l~~~f~~a~~~l~~G~is~------pv~t~~G~hIi~v~d 97 (97)
T 2rqs_A 51 KRDGSLGYFGRGKMVKPFEDAAFRLQVGEVSE------PVKSEFGYHVIKRLG 97 (97)
T ss_dssp GGTTEEEEECTTSSCHHHHHHHTTCTTSCBCC------CEECSSCEEEEEECC
T ss_pred hcCceeeeEcCCCCCHHHHHHHHcCCCCCccc------cEEECCEEEEEEEeC
Confidence 37999999999999999999999999999998 889999999999864
No 245
>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis}
Probab=99.01 E-value=1.2e-10 Score=100.51 Aligned_cols=47 Identities=47% Similarity=0.866 Sum_probs=44.2
Q ss_pred CCCCcccccc-CCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeecc
Q psy16512 3 CLSGDLGWVV-RGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 55 (815)
Q Consensus 3 ~~gg~lgw~~-~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved 55 (815)
-+||||||+. +++|+|+|++++|.|++|++|. ||+|++|||||++.+
T Consensus 45 ~~gG~lg~~~~~~~l~~~f~~a~~~l~~G~is~------pv~t~~G~hIi~v~~ 92 (93)
T 1zk6_A 45 SKGGDLGWFAKEGQMDETFSKAAFKLKTGEVSD------PVKTQYGYHIIKKTE 92 (93)
T ss_dssp GGTTEEEEECTTTSSCTTHHHHHHHSCTTCBCC------CEECSSCEEEEEEEE
T ss_pred hhCCeeeeecccccCCHHHHHHHHcCCCCCccc------eEEECCEEEEEEEec
Confidence 4799999999 9999999999999999999998 889999999999864
No 246
>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli}
Probab=99.00 E-value=4.4e-11 Score=104.70 Aligned_cols=51 Identities=22% Similarity=0.490 Sum_probs=47.0
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeeccccccc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNHLK 60 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~~~~ 60 (815)
-+||||||+.+++|+|+|++++|. ++|++|+ ||+|+||||||+++++++..
T Consensus 47 ~~GGdlG~~~~~~l~~~f~~a~~~-~~GeiS~------pv~t~~G~hIikv~~~~~~~ 97 (102)
T 2kgj_A 47 RNGGDMGWLEDATIPDELKNAGLK-EKGQLSG------VIKSSVGFLIVRLDDIQAAH 97 (102)
T ss_dssp TTTSEEEEEETTCCCHHHHTTCCC-STTCEEE------EEEETTEEEEEEEEEEECSS
T ss_pred hcCCccceecccccCHHHHHHHhc-CCCCccc------cEEECCEEEEEEEeeccccc
Confidence 479999999999999999999999 9999998 88999999999998876653
No 247
>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} SCOP: d.26.1.1 PDB: 2pv2_A
Probab=99.00 E-value=5.6e-11 Score=104.60 Aligned_cols=48 Identities=25% Similarity=0.470 Sum_probs=45.1
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeeccc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~ 56 (815)
-+||||||+.+++|+|+|++++|.|++|++|+ ||+|+||||||++.++
T Consensus 55 ~~gG~lg~~~~~~l~~~f~~a~~~l~~G~is~------pv~t~~G~hii~v~~~ 102 (103)
T 2pv1_A 55 LNGGQMGWGRIQELPGIFAQALSTAKKGDIVG------PIRSGVGFHILKVNDL 102 (103)
T ss_dssp GGTTEEEEECGGGSCHHHHHHTTTCCTTCEEE------EEEETTEEEEEEEEEE
T ss_pred ccCCccceEchhhcCHHHHHHHHcCCCCCeec------cEEECCEEEEEEEEEE
Confidence 47999999999999999999999999999998 8899999999999764
No 248
>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus}
Probab=98.98 E-value=1.8e-10 Score=102.78 Aligned_cols=47 Identities=38% Similarity=0.709 Sum_probs=44.1
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeecc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 55 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved 55 (815)
.+||||||+.+++|+++|++++|.|++|++|. ||+|+||||||++.+
T Consensus 65 ~~gG~lG~~~~~~l~~~f~~a~~~l~~G~is~------pv~t~~G~hIi~v~~ 111 (111)
T 2jzv_A 65 KKDGELGYVLKGQTDKDFEKALFKLKDGEVSE------VVKSSFGYHIIKADK 111 (111)
T ss_dssp TTTTEEEEEETTSSCHHHHHHHHTCCTTCBCC------CEEETTEEEEEEECC
T ss_pred hhCCccceecCCcccHHHHHHHHhCCCCCcCc------cEEECCEEEEEEEeC
Confidence 46999999999999999999999999999998 889999999999853
No 249
>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} SCOP: d.26.1.1
Probab=98.95 E-value=1.9e-10 Score=106.52 Aligned_cols=45 Identities=33% Similarity=0.561 Sum_probs=43.1
Q ss_pred CCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeec
Q psy16512 4 LSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE 54 (815)
Q Consensus 4 ~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ve 54 (815)
+||||||+.+++|+|+|++++|.|++|+||+ ||+|+||||||++.
T Consensus 94 ~GGdLG~~~~~~l~~~f~~a~~~l~~GeiS~------pv~t~~G~hIikv~ 138 (139)
T 1j6y_A 94 RGGDLGSFGRGQMQKPFEEATYALKVGDISD------IVDTDSGVHIIKRT 138 (139)
T ss_dssp TCSEEEECSSSSSCTHHHHHHHHCCSSSCCS------CEEETTEEECCCSC
T ss_pred cCCeeeeecccccCHHHHHHHHcCCCCCccc------cEEECCEEEEEEEe
Confidence 7999999999999999999999999999998 88999999999974
No 250
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=98.88 E-value=4.2e-08 Score=117.87 Aligned_cols=212 Identities=10% Similarity=0.004 Sum_probs=131.2
Q ss_pred CCccEEEEecc-cCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC--CCCC--CCCCcEEE
Q psy16512 200 HSNSLFVYPAE-SNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM--LDLK--QHQPDFIS 269 (815)
Q Consensus 200 ~~t~lv~i~~~-~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~--~dl~--~~~~D~vv 269 (815)
.++.+|++..+ ++..|.+.+ +++|.++|+ +||+++|+|+++. +|..- +-.. ...+|++
T Consensus 593 ~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~-----------~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDii- 660 (831)
T 4a0g_A 593 AHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECR-----------NRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIA- 660 (831)
T ss_dssp CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHH-----------HTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSEE-
T ss_pred CcEEEEEEecccccCCCCccCCHHHHHHHHHHHH-----------HcCCeEEEEcCccccccCCCchhhHhcCCCCcEE-
Confidence 45788999886 888898876 677888888 9999999998765 33211 1111 2357876
Q ss_pred EccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh
Q psy16512 270 ISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK 348 (815)
Q Consensus 270 ~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~ 348 (815)
++.|.+++- --+|++++++++.+.+.+..... . +. .....+.|..+.+++.++++.+.+.
T Consensus 661 -tlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~-~----------------~~-hg~T~~g~Pla~Aaala~L~~i~~~ 721 (831)
T 4a0g_A 661 -CFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLK-A----------------LL-HGHSYSAHAMGCATAAKAIQWFKDP 721 (831)
T ss_dssp -EECGGGGTTSSCCEEEEECHHHHHTTCSSCGGG-S----------------CC-CCCTTTTCHHHHHHHHHHHHHHHCT
T ss_pred -EEecccccCccCcEEEEECHHHHHHHhcccccc-c----------------ce-eecCCcccHHHHHHHHHHHHHHHhh
Confidence 577988731 01699999998876553211000 0 00 0011245667777778888887653
Q ss_pred hhhHHHH----HHH----HHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC----ccCHHHHHHh
Q psy16512 349 RKSFTNA----FEL----SQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT----YYGYSEVQNL 416 (815)
Q Consensus 349 ~~~~~~~----~~l----~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~----~~~~~~v~~~ 416 (815)
.. .++. ..+ .+.+.+.+.+. |.+.-+. ..|.++.+.+...... ......+.+.
T Consensus 722 ~l-~~~~~~~~~~l~~~l~~~l~~~l~~~------~~v~~vr--------g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~ 786 (831)
T 4a0g_A 722 ET-NHNITSQGKTLRELWDEELVQQISSH------SAVQRVV--------VIGTLFALELKADASNSGYASLYAKSLLIM 786 (831)
T ss_dssp TT-CTTBCTTSSBBCCCSCHHHHHHHHHS------TTEEEEE--------EETTEEEEEEC---------CHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHhhC------CCceeEe--------ecccEEEEEEecCccccccchHHHHHHHHH
Confidence 21 1111 111 22344455554 4444332 2377888887542110 0012347777
Q ss_pred hhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 417 ANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 417 l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
|.++||.++++ .+.||+++.+..|++||++++++|.+++.
T Consensus 787 l~e~Gv~v~p~----------------------------------------g~~lrl~pp~~~t~e~id~~~~~l~~~l~ 826 (831)
T 4a0g_A 787 LREDGIFTRPL----------------------------------------GNVIYLMCGPCTSPEICRRLLTKLYKRLG 826 (831)
T ss_dssp HHHTTEECCCB----------------------------------------TTEEEEECCTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHCCcEEEec----------------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 88899998753 26899999989999999999999999875
Q ss_pred h
Q psy16512 497 Q 497 (815)
Q Consensus 497 ~ 497 (815)
+
T Consensus 827 ~ 827 (831)
T 4a0g_A 827 E 827 (831)
T ss_dssp T
T ss_pred H
Confidence 3
No 251
>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni}
Probab=98.62 E-value=9.1e-09 Score=106.32 Aligned_cols=50 Identities=44% Similarity=0.833 Sum_probs=46.5
Q ss_pred CCCccccccCCCCchHHHHHHhcCCCCccc-CCCcCCCCcccCCCcceeeecccccc
Q psy16512 4 LSGDLGWVVRGSMVGEFQDAAFKLPISTVN-NPVYTEPPIKTKFGYHIIMVEGKNHL 59 (815)
Q Consensus 4 ~gg~lgw~~~~~~~~~f~~a~~~l~~g~is-~~~~~~~pv~t~fGyhIi~ved~~~~ 59 (815)
+||||||+.+++|+|+|++++|.|++|++| . ||+|+||||||++.++.+.
T Consensus 161 ~gGdlg~~~~~~l~~~f~~a~~~l~~G~is~~------pv~t~~G~hii~v~~~~~~ 211 (252)
T 3rfw_A 161 QGGELGWFDQSTMVKPFTDAAFALKNGTITTT------PVKTNFGYHVILKENSQAK 211 (252)
T ss_dssp GTTEEEEECSSSSCHHHHHHHHHSCTTEECSS------CEEETTEEEEEEEEEEECC
T ss_pred cCCcccccccccccHHHHHHHHcCCCCCccCc------eEEECCEEEEEEEEEecCC
Confidence 499999999999999999999999999999 5 7899999999999988654
No 252
>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni}
Probab=98.44 E-value=7.9e-08 Score=99.23 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=46.7
Q ss_pred CCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeecccccc
Q psy16512 4 LSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNHL 59 (815)
Q Consensus 4 ~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~~~ 59 (815)
.||+|||+..++|+|+|++++|.|++|++|. ||+|+||||||++.++.+.
T Consensus 160 l~g~lg~~~~~~l~~~~~~a~~~l~~G~is~------pv~t~~G~hiikv~~~~~~ 209 (252)
T 3rgc_A 160 LKPQNASLNTSNADPRLLGLLSQIPVGSFSP------VLNGKNGYELYEVKSKDGT 209 (252)
T ss_dssp SCCEEEEEETTTSCHHHHHHHHHSCTTCBCC------CBTTTTCEEEEEEEECSCE
T ss_pred cccccceecHHhcCHHHHHHHHcCCCCCcCC------cEEeCCeEEEEEEecccCC
Confidence 4899999999999999999999999999997 8899999999999988654
No 253
>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid}
Probab=98.31 E-value=1.3e-07 Score=101.29 Aligned_cols=48 Identities=23% Similarity=0.340 Sum_probs=45.6
Q ss_pred CCCccccccCCCCc---hHHHHHHhcCCCCcccCCCcCCCCcccCC-Ccceeeecccc
Q psy16512 4 LSGDLGWVVRGSMV---GEFQDAAFKLPISTVNNPVYTEPPIKTKF-GYHIIMVEGKN 57 (815)
Q Consensus 4 ~gg~lgw~~~~~~~---~~f~~a~~~l~~g~is~~~~~~~pv~t~f-GyhIi~ved~~ 57 (815)
+||+|||+.+++|+ |+|++++|.|++|++|. ||+|+| |||||++.++.
T Consensus 214 ~gG~lg~~~~~~l~~~~~~~~~a~~~l~~Geis~------pv~t~~~G~hIikv~~~~ 265 (325)
T 3nrk_A 214 RRGMVEWISSFDLYKYSKITATIAAPLPNGGVSE------VFRDERKRYCILKIEGKR 265 (325)
T ss_dssp TTTEEEEEEHHHHHHHCHHHHHHHTTCCTTCBCC------CEECTTSCEEEEEEEEEE
T ss_pred cCCcccccccccccccCHHHHHHHHcCCCCCCCc------eEEeCCCeEEEEEEeccC
Confidence 79999999999999 99999999999999998 889999 99999998873
No 254
>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A
Probab=98.07 E-value=1.1e-06 Score=97.37 Aligned_cols=50 Identities=28% Similarity=0.589 Sum_probs=46.6
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeeccccc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNH 58 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~~ 58 (815)
-+||+|||+.+++|+|+|++++|.|++|++|. ||+|++||||+++.+..+
T Consensus 316 ~~gg~lg~~~~~~~~~~~~~a~f~l~~G~~s~------~v~~~~g~~ii~v~~~~~ 365 (408)
T 1m5y_A 316 NQGGDLGWATPDIFDPAFRDALTRLNKGQMSA------PVHSSFGWHLIELLDTRN 365 (408)
T ss_dssp GGTTEEEEECGGGSCHHHHHHHHTCCTTCBCC------CEECSSCEEEEEEEEEEE
T ss_pred hcCCcCcccCcccchHHHHHHHHcCCCCCccC------cEeeCCeEEEEEEeeecC
Confidence 36999999999999999999999999999998 889999999999988764
No 255
>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A
Probab=97.95 E-value=1.3e-06 Score=97.01 Aligned_cols=51 Identities=24% Similarity=0.417 Sum_probs=47.2
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeecccccc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNHL 59 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~~~ 59 (815)
-+||||||+.+++|+|+|++++|.|++|++|+ ||+|++||||+++.+....
T Consensus 206 ~~gG~lg~~~~~~l~~~~~~~~~~l~~G~vs~------pv~~~~g~~iikv~~~~~~ 256 (408)
T 1m5y_A 206 LNGGQMGWGRIQELPGIFAQALSTAKKGDIVG------PIRSGVGFHILKVNDLRGE 256 (408)
T ss_dssp GGTTEEEEECGGGSCHHHHTGGGTCCTTCEEE------EEEETTEEEEEEEEEECCC
T ss_pred ccCCcccccchhhccHHHHHHHHhCCCCCccC------eeecCCeEEEEEEEEecCC
Confidence 37999999999999999999999999999998 8899999999999887654
No 256
>1o65_A Hypothetical protein YIIM; structural genomics, unknown function; 2.33A {Escherichia coli} SCOP: b.58.1.2 PDB: 1o67_A
Probab=97.78 E-value=2.7e-05 Score=78.40 Aligned_cols=98 Identities=10% Similarity=-0.003 Sum_probs=75.4
Q ss_pred cceeeecHHhHHHHHHHhhhhcCcccccccccceEEEcCCCCcccCCCc--ceEEEecCCCCeEEEecccCCCccccccC
Q psy16512 675 GQYLLITLPSIQAQLENLNAIFELENFVNRFRSNFVVSGQFEANAENDW--DQVLIETNDGLLSFQVTSQCTRCQYIYID 752 (815)
Q Consensus 675 ~p~~l~s~~Sl~~l~~~l~~~~~~~~~~~rFRpNivi~~~~~~~~Ed~w--~~i~Ig~~~~~~~~~~~~~~~RC~~~~vd 752 (815)
..|++++.++++.+++.++.+ ...+++-+||-||+++|. . .++-| ++++|| ++.|+|+.||.+|.-++..
T Consensus 67 rqV~l~~~E~~~~~~~~~g~~-~~~l~pg~fgENLtv~Gl-~--~~~l~iG~rlrIG----~avLeVTq~r~PC~~~~~~ 138 (246)
T 1o65_A 67 RALCHYPREHYLYWAREFPEQ-AELFVAPAFGENLSTDGL-T--ESNVYMGDIFRWG----EALIQVSQPRSPCYKLNYH 138 (246)
T ss_dssp GSEEEEETHHHHHHHHHCGGG-GGGCSTTTTCCSEEESSC-C--TTTCBTTCEEEET----TEEEEEEEECCCCTHHHHH
T ss_pred CeEEECCHHHHHHHHHHhCCC-cccCCcccccCCEEECCc-c--hhhCCCCCEEEEC----CEEEEEEeCcCccHhHHHH
Confidence 459999999999999887542 114778999999999998 3 44557 999999 9999999999999987665
Q ss_pred ccCCCCCCChhHHHHhccccccccCccccccccccccc
Q psy16512 753 QETALNTDVPLGEYQTRNFSTVSLNVKEFFNNLEKTYN 790 (815)
Q Consensus 753 ~~tg~~~~~~l~~l~~~r~~~~~~~~~~~~~~~~~~~~ 790 (815)
++. ++..+.+.+.+ ..|+|+-++..|.-
T Consensus 139 --~g~--~~~~~~~~~~~------r~G~y~rVl~~G~V 166 (246)
T 1o65_A 139 --FDI--SDIAQLMQNTG------KVGWLYSVIAPGKV 166 (246)
T ss_dssp --TTC--TTHHHHHHHHT------CCCEEEEEEECEEE
T ss_pred --hcC--cCHHHHHhhCC------CcEEEEEEeeCcEE
Confidence 343 35666666532 45888888866543
Done!