RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16512
(815 letters)
>gnl|CDD|215384 PLN02724, PLN02724, Molybdenum cofactor sulfurase.
Length = 805
Score = 472 bits (1215), Expect = e-155
Identities = 258/748 (34%), Positives = 402/748 (53%), Gaps = 73/748 (9%)
Query: 59 LKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF 118
LK + YLD+ GA +YS+SQ+ + N++ +PH S S I+ R ++L+YF
Sbjct: 32 LKGVVYLDHAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYF 91
Query: 119 NTDSDHYSVIFTSGATSAIKTVSEYFEFN-EGSFIYLTDNHTSVLGMRE--LVKTNQIYS 175
N Y+ +FTSGAT+A+K V E F ++ E F Y +NH SVLG+RE L K +
Sbjct: 92 NAPPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAIA 151
Query: 176 FSVDDARN-----------------MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKY 218
+++A N N K + E+ + +LF +P+E NFSG K+
Sbjct: 152 VDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKR--EDDGEAYNLFAFPSECNFSGAKF 209
Query: 219 PLSWCNTVHRNHVFKKHFKCSRSNCF-VLLDAATYCGSNMLDLKQHQPDFISISFYKMFG 277
PL + N +H S+S + VLLDAA CG++ DL ++ DF+ +SFYK+FG
Sbjct: 210 PLDLVKLIKDN----QHSNFSKSGRWMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFG 265
Query: 278 YPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIIS 337
YPTGLGAL+V++ +A +L K ++GGGTV S+A+ +F +++ + ++FEDGT+++L+I +
Sbjct: 266 YPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAA 325
Query: 338 LKYGFDTMEKKRKSFTN--AFELSQYTYFYFKQLSYSNGQPLVELY--HDTDYGESKYQG 393
L++GF + + S + L+ Y + L + NG P+ LY H E QG
Sbjct: 326 LRHGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKL-EFHIQG 384
Query: 394 NIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQG 453
IV FNL DG++ G+ EV+ LA+L IQLRTGC CNPG+C ++LGLS ++ +F+ G
Sbjct: 385 PIVTFNLKRADGSWVGHREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAG 444
Query: 454 HICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQADFVSIGDICLINNQ 513
H+C DD+D+I G+PTG++R+S+G+ S ++D + F+ F+ F+ +
Sbjct: 445 HVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFVSTPKKRGNVTL------ 498
Query: 514 RAESSKGFFLNHSDNINKENKLVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITH 573
R++ + + ++L SI +YP+K+C F VE +W ++ +GL +DR+WMI +
Sbjct: 499 RSKRTIPLPVLERKESFDSHRLKSITVYPIKSCAGFSVE-RWPLSETGLLYDREWMIQSL 557
Query: 574 SGVPLTQKLEKNLCLVQPNFDITRNIMTLCYKSSGSTVEIGIDNEGLDLCTSKV--CSDK 631
+G LTQK +CL+ D+ + + +EI ++++ + +V C ++
Sbjct: 558 TGEILTQKKVPEMCLITTFIDLESGKLVVRAPRCDHKLEIPLESDSQHEESGEVILCGNR 617
Query: 632 ITGFDCGNAVANWLDEQLNRKGLRLIR--ISKRSSKRNIN-------------SFSNMGQ 676
G + W L R+ L+R S RN N SF+N GQ
Sbjct: 618 AESMSYGTEINEWFTNALGRR-CTLVRKSSSNTRVCRNRNPSHSPCGDDESRLSFANEGQ 676
Query: 677 YLLITLPSIQAQLENLNAIFELENFVN-------RFRSNFVVSGQFEANAENDWDQVLIE 729
+LLI+ +A +E+LN RFR N VVSG EA AE++W + I
Sbjct: 677 FLLIS----EASVEDLNRRLATGQEDAKIRLDPTRFRPNLVVSGG-EAYAEDEWQSLSI- 730
Query: 730 TNDGLLSFQVTSQCTRCQYIYIDQETAL 757
G F V C RCQ I IDQET L
Sbjct: 731 ---GDAEFTVLGGCNRCQMINIDQETGL 755
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones].
Length = 405
Score = 140 bits (354), Expect = 7e-36
Identities = 87/413 (21%), Positives = 149/413 (36%), Gaps = 70/413 (16%)
Query: 60 KDICYLDYTGAGVYSQS---QMNQTIEQLKENI--FSHPHGNSVLSDFCVSEIDQMRTKI 114
K + YLD Q+ + + + N+ +H + R +
Sbjct: 21 KPLVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEA-----TDLYEAAREAV 75
Query: 115 LQYFNTDSDHYSVIFTSGATSAIKTVSEYF--EFNEGSFIYLTDN--HTSVLGMREL--- 167
++ N DS ++FT G T A+ V+ G I ++D H++++ +EL
Sbjct: 76 ARFLNADSSD-EIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKR 134
Query: 168 -------VKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPL 220
+ + +D ++ L SN +GT P+
Sbjct: 135 TGAKVRVIPLDDDGLLDLDALEKLITP-------------KTKLVALSHVSNVTGTVNPV 181
Query: 221 SW-CNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYP 279
H + VL+DAA G +D+++ DF++ S +K P
Sbjct: 182 KEIAELAHEH------------GALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGP 229
Query: 280 TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339
TG+G L V+++ L GGG ++ +E + + L +FE GT N I L
Sbjct: 230 TGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPL--RFEAGTPNIAGAIGLA 287
Query: 340 YGFDTMEKKRKSFTNAFE--LSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVN 397
D + + A E L++Y +L P VE+Y D +G IV+
Sbjct: 288 AALDYLLEIGMEAIEAHERELTEYLLEGLSEL------PGVEIYGPPDAD----RGGIVS 337
Query: 398 FNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHF 450
FN+ +V L + K I +R G HC + + I H
Sbjct: 338 FNVKGIHP-----HDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHL 385
>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is
found in amino transferases, and other enzymes including
cysteine desulphurase EC:4.4.1.-.
Length = 370
Score = 101 bits (253), Expect = 6e-23
Identities = 83/399 (20%), Positives = 135/399 (33%), Gaps = 91/399 (22%)
Query: 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFE--FNEG-SFIYLTDNHTSV-- 161
++ R K+ ++ N SD +IFTSG T AI V+ G + H +
Sbjct: 45 YEEAREKVAEFINAPSD-EEIIFTSGTTEAINLVAISLGRSLKPGDEILVTEMEHHANLV 103
Query: 162 ----LGMRELVKTNQIYSFSVDDARNM-LNEFKESQENVENMRHSNSLFVYPAESNFSGT 216
L R + VD + L+ ++ + L SN +GT
Sbjct: 104 PWQELAKRTGAT---VRVIPVDPNGLLDLDALEK------LLTPRTKLVAITHVSNVTGT 154
Query: 217 KYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMF 276
N V K V++DAA G +D++ DF++ S +K++
Sbjct: 155 ------VNPVEE---IGKLAH--EYGALVVVDAAQAVGHRPIDVQALGVDFLAFSGHKLY 203
Query: 277 GYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAII 336
G PTG+G L ++ L GGG + KFE GT N II
Sbjct: 204 G-PTGIGVLYGRRDLLEKLPPLLGGGGMIDTV---SLQETTFADAPSKFEAGTPNIAGII 259
Query: 337 SL--------KYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGE 388
L + G + +EK + EL+ Y Y + P + LY
Sbjct: 260 GLGAALDYLAEIGLEAIEKHER------ELAAYLYERLLAI------PGIRLYGPPA--- 304
Query: 389 SKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKF 448
+ + +I++FN +V L + + I +R+G HC R
Sbjct: 305 -ERRPSIISFNF-----PGVHPHDVATLLDERGIAVRSGHHCAQPLMVRL---------- 348
Query: 449 HFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYF 487
G++R S + ++V
Sbjct: 349 -----------------GLGGTLRASLYFYNTEEEVDRL 370
>gnl|CDD|217584 pfam03476, MOSC_N, MOSC N-terminal beta barrel domain. This domain
is found to the N-terminus of pfam03473. The function of
this domain is unknown, however it is predicted to adopt
a beta barrel fold.
Length = 118
Score = 83.6 bits (207), Expect = 3e-19
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 534 KLVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKLEKNLCLVQPNF 593
++ S+++YP+K+C + +T +GL++DR+WM++ G +T + L L++
Sbjct: 3 RVSSLFVYPIKSCRGESLSRAE-LTPAGLRWDRRWMVVDSDGKFITARRHPRLVLIRTTL 61
Query: 594 DITRNIMTLCYKSSGSTVEIGIDNEGLDLCTSKVCSDKITGFDCGNAVANWLDEQL 649
D +TL + + + L V +G DCG+A A+W + L
Sbjct: 62 D-EDGGLTLTA-PGMPPLSVPLAANKFQLVGVLVWGLSFSGRDCGDAAADWFSDFL 115
>gnl|CDD|225758 COG3217, COG3217, Uncharacterized Fe-S protein [General function
prediction only].
Length = 270
Score = 77.1 bits (190), Expect = 2e-15
Identities = 57/230 (24%), Positives = 90/230 (39%), Gaps = 24/230 (10%)
Query: 534 KLVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKLEKNLCLVQPN- 592
L +YIYPVK+ ++ V ASGL DR++M++ G +T + + P
Sbjct: 3 TLSQLYIYPVKSLRGERLSRAL-VDASGLAGDRRFMLVDPDGRFITARRRPAMVRFTPAY 61
Query: 593 FDITRNIMTLCYKSSGSTVEIGIDNEGLDLCTSKVCSDKITGFDCGNAVANWLDEQLNRK 652
+ V +V D T G+A +WL L R
Sbjct: 62 EHDGLRLTAP--DGEELYVRFADAQ----RAPVEVWGDHFTADAAGDAANDWLSGFLGRA 115
Query: 653 GLRLIRISKRSSKR------NINSFSNMGQYLLITLPSIQAQLENLNAIFELENFVNRFR 706
+ L ++R +F++ LL S+ + A E+E RFR
Sbjct: 116 -VSLRWDGAGFARRVKAGPAVPVTFADGYPILLFNTASLADLRRRVPANLEME----RFR 170
Query: 707 SNFVVSGQFEANAENDWDQVLIETNDGLLSFQVTSQCTRCQYIYIDQETA 756
N VV G+ +A AE+ W + I G + F V C+RC + +D +T
Sbjct: 171 PNLVVEGE-DAFAEDSWKSIRI----GGVRFDVVKPCSRCIFTTVDPDTG 215
>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein.
This model describes a subfamily of probable pyridoxal
phosphate-dependent enzymes in the aminotransferase
class V family. Related families contain members active
as cysteine desulfurases, selenocysteine lyases, or
both. The members of this family form a distinct clade
and all are shorter at the N-terminus. The function of
this subfamily is unknown [Unknown function, Enzymes of
unknown specificity].
Length = 376
Score = 78.2 bits (193), Expect = 2e-15
Identities = 86/406 (21%), Positives = 146/406 (35%), Gaps = 61/406 (15%)
Query: 85 LKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYF 144
K S G L+ E+++ R + + FN V+FT+ AT+A+ +
Sbjct: 24 YKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNA-PSSAHVVFTNNATTALNIALKGL 82
Query: 145 EFNEGSFIYLTD-NHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNS 203
EG + T H SV R L + + + NE S E ++ +N+
Sbjct: 83 -LKEGDHVITTPMEHNSV--ARPLECLKEQIGVEITIVKCD-NEGLISPERIKRAIKTNT 138
Query: 204 -LFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262
L V SN +GT P+ + + + F +LDAA G +D+ +
Sbjct: 139 KLIVVSHASNVTGTILPIEEIGELAQEN-----------GIFFILDAAQTAGVIPIDMTE 187
Query: 263 HQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLF 322
D ++ + +K P G G L +++ K GGT ++ + L
Sbjct: 188 LAIDMLAFTGHKGLLGPQGTGGLYIREGIKL---KPLKSGGT----GSHSALIDQPSELP 240
Query: 323 EKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYH 382
++FE GT+N I L G +EK + E L V++Y
Sbjct: 241 DRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKL-LNGL--REINK-VKIYG 296
Query: 383 DTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLS 442
D + +V+F + D L I RTG HC P + + +G
Sbjct: 297 PADPAN---RVGVVSFTVEGIDSEEVA----DILDEKFDIATRTGLHCAPLA-HKTIGT- 347
Query: 443 DITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFL 488
TG+IR+S G+ + ++++ L
Sbjct: 348 -----------------------FATGTIRLSLGYFNTEEEIEKLL 370
>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily. This model
represents a subfamily of NifS-related cysteine
desulfurases involved in FeS cluster formation needed
for nitrogen fixation among other vital functions. Many
cysteine desulfurases are also active as selenocysteine
lyase and/or cysteine sulfinate desulfinase. This
subfamily is associated with the six-gene SUF system
described in E. coli and Erwinia as an FeS cluster
formation system during oxidative stress. The active
site Cys is this subfamily resembles GHHC with one or
both His conserved [Biosynthesis of cofactors,
prosthetic groups, and carriers, Other].
Length = 403
Score = 71.9 bits (177), Expect = 4e-13
Identities = 85/399 (21%), Positives = 158/399 (39%), Gaps = 62/399 (15%)
Query: 58 HLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPH-GNSVLSDFCVSEIDQMRTKILQ 116
+ K + YLD + A Q+ + + N ++ H G LS + +R K+ +
Sbjct: 15 NGKPLVYLD-SAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAK 73
Query: 117 YFNTDSDHYSVIFTSGATSAIKTVSEYF---EFNEGSFIYLT--DNHTSVLGMRELVKTN 171
+ N SD ++FT G T +I V+ + G I ++ ++H +++ + L +
Sbjct: 74 FINAASDE-EIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERT 132
Query: 172 --QIYSFSVDDARNMLNEFKESQENVENMRHSNSLFV-YPAESNFSGTKYPLSWCNTVHR 228
+ +DD + +++E + + V SN GT P+
Sbjct: 133 GATLKFIPLDD------DGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVE--EIAKL 184
Query: 229 NHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVK 288
H + VL+D A +D++ DF S +KM+G PTG+G L K
Sbjct: 185 AH---------QVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMYG-PTGIGVLYGK 234
Query: 289 QKSAHVLNKTFYGGGTVK-ISMANENFHIKKDGLFEKFEDGTVNYLAIISL--------K 339
++ + GG + +S + + KFE GT N +I L
Sbjct: 235 EELLEQMPPFLGGGEMIAEVSFEETTY----NEAPHKFEAGTPNIAGVIGLGAAIDYLEA 290
Query: 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFN 399
G + +E EL+ Y ++ P + +Y D + +G I++FN
Sbjct: 291 IGLENIEAHEH------ELTAYALERLGEI------PGLRIYGPRDAED---RGGIISFN 335
Query: 400 LLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRF 438
+ +G + +V + + + I +R+G HC +RF
Sbjct: 336 V---EGVH--PHDVGTILDEEGIAVRSGHHCAQPLMRRF 369
>gnl|CDD|216038 pfam00639, Rotamase, PPIC-type PPIASE domain. Rotamases increase
the rate of protein folding by catalyzing the
interconversion of cis-proline and trans-proline.
Length = 94
Score = 61.1 bits (149), Expect = 1e-11
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 55
GDLGW RG + EF+DAAF L + P++T FGYHII V
Sbjct: 51 GDLGWFTRGQLPPEFEDAAFSLKEGEI------SGPVETPFGYHIIKVTD 94
>gnl|CDD|131061 TIGR02006, IscS, cysteine desulfurase IscS. This model represents
IscS, one of several cysteine desulfurases from a larger
protein family designated (misleadingly, in this case)
class V aminotransferases. IscS is one of at least 6
enzymes characteristic of the IscSUA-hscAB-fsx system of
iron-sulfur cluster assembly. Scoring almost as well as
proteobacterial sequences included in the model are
mitochondrial cysteine desulfurases, apparently from an
analogous system in eukaryotes. The sulfur, taken from
cysteine, may be used in other systems as well, such as
tRNA base modification and biosynthesis of other
cofactors [Biosynthesis of cofactors, prosthetic groups,
and carriers, Other, Protein synthesis, tRNA and rRNA
base modification].
Length = 402
Score = 59.8 bits (145), Expect = 2e-09
Identities = 60/252 (23%), Positives = 98/252 (38%), Gaps = 37/252 (14%)
Query: 64 YLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSE-IDQMRTKILQYFNTDS 122
YLDY + + L E F +P S + E ++ R ++ + DS
Sbjct: 6 YLDYAATTPVDPRVAEKMMPYLTEK-FGNPASRSHSFGWEAEEAVENARNQVAELIGADS 64
Query: 123 DHYSVIFTSGATS----AIKTVSEYFEFNEGSFIYLTDNHTSVL-GMRELVKTNQIYSFS 177
++FTSGAT AIK ++ +++ I H +VL R L + F
Sbjct: 65 RE--IVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLERE----GFE 118
Query: 178 V------DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHV 231
V + L E K +R L +N G ++ +
Sbjct: 119 VTYLPPKSNGLIDLEELKA------AIRDDTILVSIMHVNNEIGVIQDIAAIGEI----- 167
Query: 232 FKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKS 291
C F +DAA G +++ + + D +SIS +K++G P G+GAL V++K
Sbjct: 168 ------CRERKVFFHVDAAQSVGKIPINVNELKVDLMSISGHKIYG-PKGIGALYVRRKP 220
Query: 292 AHVLNKTFYGGG 303
L +GGG
Sbjct: 221 RVRLEALIHGGG 232
>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like. This family
belongs to the pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to cysteine
desulfurase (SufS) and selenocysteine lyase. SufS
catalyzes the removal of elemental sulfur and selenium
atoms from L-cysteine, L-cystine, L-selenocysteine, and
L-selenocystine to produce L-alanine; and selenocysteine
lyase catalyzes the decomposition of L-selenocysteine.
Length = 373
Score = 55.9 bits (136), Expect = 4e-08
Identities = 56/206 (27%), Positives = 84/206 (40%), Gaps = 42/206 (20%)
Query: 245 VLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGT 304
VL+D A G +D++ DF++ S +KM G PTG+G L K+ + YGGG
Sbjct: 172 VLVDGAQSAGHMPVDVQDLGCDFLAFSGHKMLG-PTGIGVLYGKE--ELLEEMPPYGGGG 228
Query: 305 VKISMANENF--HIKKDGLFEKFEDGTVNYLAIISL--------KYGFDTMEKKRKSFTN 354
M E L KFE GT N I L K G + +
Sbjct: 229 ---EMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEH---- 281
Query: 355 AFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNL--LHKDGTYYGYSE 412
EL+ Y ++LS G V + YG+++ + +V+FNL +H +
Sbjct: 282 --ELTAYAL---ERLSEIPG---VRV-----YGDAEDRAGVVSFNLEGIHP-------HD 321
Query: 413 VQNLANLKKIQLRTGCHCNPGSCQRF 438
V + + I +R G HC +R
Sbjct: 322 VATILDQYGIAVRAGHHCAQPLMRRL 347
Score = 29.4 bits (67), Expect = 8.1
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 111 RTKILQYFNTDSDHYSVIFTSGATSAIKTV 140
R K+ ++ N S +IFT T AI V
Sbjct: 49 REKVARFINAPSPD-EIIFTRNTTEAINLV 77
>gnl|CDD|178257 PLN02651, PLN02651, cysteine desulfurase.
Length = 364
Score = 52.7 bits (127), Expect = 3e-07
Identities = 48/206 (23%), Positives = 80/206 (38%), Gaps = 23/206 (11%)
Query: 103 CVSEIDQMRTKILQYFNTDSDHYSVIFTSGATS----AIKTVSEYFEFNEGSFIYLTDNH 158
+++ R ++ D +IFTSGAT AIK V +++ + I H
Sbjct: 41 SEDAVEKARAQVAALIGADPK--EIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEH 98
Query: 159 TSVLG-MRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTK 217
VL R L + ++ + +++ E +R +L A +N G
Sbjct: 99 KCVLDSCRHLQQEGFEVTYLPVKSDGLVD----LDELAAAIRPDTALVSVMAVNNEIGVI 154
Query: 218 YPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFG 277
P+ + C DAA G +D+ D +SIS +K++G
Sbjct: 155 QPVEEIGEL-----------CREKKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKIYG 203
Query: 278 YPTGLGALIVKQKSAHVLNKTFYGGG 303
P G+GAL V+++ L GGG
Sbjct: 204 -PKGVGALYVRRRPRVRLEPLMSGGG 228
>gnl|CDD|222266 pfam13616, Rotamase_3, PPIC-type PPIASE domain. Rotamases increase
the rate of protein folding by catalyzing the
interconversion of cis-proline and trans-proline.
Length = 114
Score = 48.4 bits (116), Expect = 6e-07
Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 6 GDLGWVV-RGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
GDLGW G MV EF DA F L + + ++T FGYHII V K
Sbjct: 69 GDLGWFTASGQMVKEFIDALFTLKVGEIG-------VVETPFGYHIIQVTDK 113
>gnl|CDD|179537 PRK03095, prsA, peptidylprolyl isomerase; Reviewed.
Length = 287
Score = 51.5 bits (123), Expect = 7e-07
Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 6/48 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMV 53
GDLG+ G MV EF+DAA+KL V+ PV K++FGYHII V
Sbjct: 177 GDLGFFGAGKMVKEFEDAAYKLKKDEVSEPV------KSQFGYHIIKV 218
>gnl|CDD|179522 PRK02998, prsA, peptidylprolyl isomerase; Reviewed.
Length = 283
Score = 49.6 bits (118), Expect = 3e-06
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNHLK 60
G++ G V EF++AA+KL V+ PV KT +GYHII V K LK
Sbjct: 179 GEISGFAPGQTVKEFEEAAYKLDAGQVSEPV------KTTYGYHIIKVTDKKELK 227
>gnl|CDD|101162 PRK03002, prsA, peptidylprolyl isomerase; Reviewed.
Length = 285
Score = 48.8 bits (116), Expect = 4e-06
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNHLK 60
GDLG+ G M EF+ AA+KL + ++NPV K+ GYHII + K LK
Sbjct: 181 GDLGYFNSGRMAPEFETAAYKLKVGQISNPV------KSPNGYHIIKLTDKKDLK 229
>gnl|CDD|217583 pfam03473, MOSC, MOSC domain. The MOSC (MOCO sulfurase C-terminal)
domain is a superfamily of beta-strand-rich domains
identified in the molybdenum cofactor sulfurase and
several other proteins from both prokaryotes and
eukaryotes. These MOSC domains contain an absolutely
conserved cysteine and occur either as stand-alone
forms, or fused to other domains such as NifS-like
catalytic domain in Molybdenum cofactor sulfurase. The
MOSC domain is predicted to be a sulfur-carrier domain
that receives sulfur abstracted by the pyridoxal
phosphate-dependent NifS-like enzymes, on its conserved
cysteine, and delivers it for the formation of diverse
sulfur-metal clusters.
Length = 124
Score = 45.8 bits (109), Expect = 6e-06
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 18/116 (15%)
Query: 668 INSFSNMGQYLLITLPSIQAQLENLNAIFELENFVNRFRSNFVVSGQFEANAENDW---D 724
+ LLI+ S+ A L + L+ RFR N VVSG E+ W D
Sbjct: 12 RVHGGDERAVLLISRESL-ADLNARLGLRLLDP--GRFRENLVVSGL----EEDTWCIGD 64
Query: 725 QVLIETNDGLLSFQVTSQCTRCQYIYIDQETALNTDVPLGEYQTRNFSTVSLNVKE 780
++ I G+L +V+ C C + +DQET +G Y + V
Sbjct: 65 RIRI---GGVL-LEVSGPCKPCVMLCVDQETGER----VGRYLAAGKRGIYARVLR 112
>gnl|CDD|223831 COG0760, SurA, Parvulin-like peptidyl-prolyl isomerase
[Posttranslational modification, protein turnover,
chaperones].
Length = 320
Score = 48.2 bits (114), Expect = 8e-06
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNHLKDICYL 65
G LGW +G +V EF+ AAF L + P +KT FGYHII VE K K
Sbjct: 218 GLLGWNKKGQLVPEFRKAAFILK-----VGEVSAP-VKTSFGYHIIKVEKKRDAKLDFPE 271
Query: 66 DYTGAGVYSQSQMNQTIEQLKEN 88
+ + ++ Q K
Sbjct: 272 VKAVKEISLKQELLQKAALEKLL 294
>gnl|CDD|184450 PRK14012, PRK14012, cysteine desulfurase; Provisional.
Length = 404
Score = 46.9 bits (112), Expect = 3e-05
Identities = 64/283 (22%), Positives = 104/283 (36%), Gaps = 71/283 (25%)
Query: 86 KENIFSHPHGNSVLSDFCVSE-IDQMRTKILQYFNTDSDHYSVIFTSGATS----AIKTV 140
+ F +P S + E +D R +I +D ++FTSGAT AIK
Sbjct: 29 MDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIG--ADPREIVFTSGATESDNLAIKGA 86
Query: 141 SEYFEFNEGSFIYLTDNHTSVL-GMREL-----------VKTNQIYSFSVDDARNMLNEF 188
+ +++ I H +VL R+L ++N I +D L +
Sbjct: 87 AHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSNGI----ID-----LEKL 137
Query: 189 KESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLD 248
+ MR L +N G ++ + R +D
Sbjct: 138 EA------AMRDDTILVSIMHVNNEIGVIQDIAAIGEICRER-----------GIIFHVD 180
Query: 249 AATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGG------ 302
AA G +DL + + D +S S +K++G P G+GAL V++K L +GG
Sbjct: 181 AAQSVGKVPIDLSKLKVDLMSFSAHKIYG-PKGIGALYVRRKPRVRLEAQMHGGGHERGM 239
Query: 303 --GTV---------------KISMANENFHIKKDGLFEKFEDG 328
GT+ K MA EN I+ L ++ +G
Sbjct: 240 RSGTLPTHQIVGMGEAARIAKEEMATENERIRA--LRDRLWNG 280
>gnl|CDD|185573 PTZ00356, PTZ00356, peptidyl-prolyl cis-trans isomerase (PPIase);
Provisional.
Length = 115
Score = 43.1 bits (102), Expect = 5e-05
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHII 51
GDLG+ RG M F+DAAF L + +++ V+T+ G HII
Sbjct: 72 GDLGFFGRGQMQKPFEDAAFALKVGEISDIVHTDS------GVHII 111
>gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA. This model
describes DndA, a protein related to IscS and part of a
larger family of cysteine desulfurases. It is encoded,
typically, divergently from a conserved, sparsely
distributed operon for sulfur modification of DNA. This
modification system is designated dnd, after the
phenotype of DNA degradation during electrophoresis. The
system is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndB is described
as a putative ATPase [DNA metabolism,
Restriction/modification].
Length = 353
Score = 44.4 bits (105), Expect = 1e-04
Identities = 53/211 (25%), Positives = 90/211 (42%), Gaps = 38/211 (18%)
Query: 107 IDQMRTKILQYFNTDSDHYSVIFTSGATS----AIKTVSEYFEFNEGSFIYLTD--NHTS 160
+++ R ++ + D++ VIFTSGAT AI ++ E +G +T H +
Sbjct: 44 VERARKQVAEALGADTEE--VIFTSGATESNNLAILGLARAGE-QKGKKHIITSAIEHPA 100
Query: 161 VLGMRELVKTNQIYSFSVD------DARNMLNEFKESQENVENMRHSNSLFVYPAESNFS 214
VL ++ N F+V R ++E ++ +R L +N +
Sbjct: 101 VLEPIRALERN---GFTVTYLPVDESGRIDVDELADA------IRPDTLLVSIMHVNNET 151
Query: 215 GTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYK 274
G+ P+ V H F +DAA G +DL + D IS S +K
Sbjct: 152 GSIQPIREIAEVLEAH-----------EAFFHVDAAQVVGKITVDLSADRIDLISCSGHK 200
Query: 275 MFGYPTGLGALIVKQ--KSAHVLNKTFYGGG 303
++G P G+GAL++++ K L +GGG
Sbjct: 201 IYG-PKGIGALVIRKRGKPKAPLKPIMFGGG 230
>gnl|CDD|185338 PRK15441, PRK15441, peptidyl-prolyl cis-trans isomerase C;
Provisional.
Length = 93
Score = 37.3 bits (86), Expect = 0.003
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 10/54 (18%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEP--PIKTKFGYHIIMVEGKN 57
GDLG +G MV F F P+ EP P+ T+FGYHII V +N
Sbjct: 48 GDLGEFRQGQMVPAFDKVVFSCPV--------LEPTGPLHTQFGYHIIKVLYRN 93
>gnl|CDD|234605 PRK00059, prsA, peptidylprolyl isomerase; Provisional.
Length = 336
Score = 40.1 bits (94), Expect = 0.003
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 5 SGDLGWV--VRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
GDLG V EF D A L ++ PV KT+FGYHII K
Sbjct: 240 GGDLGDVPYSDSGYDKEFMDGAKALKEGEISAPV------KTQFGYHIIKAIKK 287
>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase
and related enzymes [Amino acid transport and
metabolism].
Length = 386
Score = 37.5 bits (88), Expect = 0.022
Identities = 85/399 (21%), Positives = 141/399 (35%), Gaps = 87/399 (21%)
Query: 107 IDQMRTKILQYFNTDSDHYSVIFTSGATS----AIKTVS-EYFEFNEGSFIYLTD-NHTS 160
+++ R +I + D + +IFTSGAT AIK + Y +G I + H +
Sbjct: 46 VEEAREQIAKLLGADPEE--IIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPA 103
Query: 161 VLGMRELVKTNQIYSFSVD----DARNMLNEFKESQENV-ENMRHSNSLFVYPAESNFSG 215
VL + + F V D+ +++ E + E +R L +N +G
Sbjct: 104 VL---NTCRYLERQGFEVTYLPVDSNGLVDL-----EQLEEALRPDTILVSIMHANNETG 155
Query: 216 TKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKM 275
T P++ + K+ +DA G +DL++ D +S S +K
Sbjct: 156 TIQPIA-----EIGEICKER------GILFHVDAVQAVGKIPIDLEELGVDLLSFSAHK- 203
Query: 276 FGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAI 335
FG P G+GAL V+ L +GGG GT N I
Sbjct: 204 FGGPKGIGALYVRPGV--RLEPLIHGGGQ-----------------ERGLRSGTENVPGI 244
Query: 336 ISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNI 395
+ + ++ + L + L P V L D + NI
Sbjct: 245 VGFGKAAEIAVEELEE--ENARLRKLRDRLEDGL--LEIIPDVYLNGD----DEPRLPNI 296
Query: 396 VNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHI 455
+NF+ +G + +L I + TG C+ GS L S H+
Sbjct: 297 LNFSFPGVEG-----ESLLLALDLAGIAVSTGSACSSGS----LEPS-----------HV 336
Query: 456 ---CGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFL 491
G +++ GSIR S G + +++ L
Sbjct: 337 LRAMGISEELAH----GSIRFSLGRFTTEEEIDAAAEAL 371
>gnl|CDD|131979 TIGR02933, nifM_nitrog, nitrogen fixation protein NifM. Members of
this protein family, found in a subset of
nitrogen-fixing bacteria, are the nitrogen fixation
protein NifM. NifM, homologous to peptidyl-prolyl
cis-trans isomerases, appears to be an accessory protein
for NifH, the Fe protein, also called component II or
dinitrogenase reductase, of nitrogenase [Central
intermediary metabolism, Nitrogen fixation].
Length = 256
Score = 37.1 bits (86), Expect = 0.022
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 10/57 (17%)
Query: 2 QCLS----GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE 54
C + G LGWV RG + + A F+L ++ PPI+++ G+H+++ E
Sbjct: 168 HCPTAMEGGLLGWVSRGLLYPQLDAALFQLAEGELS------PPIESEIGWHLLLCE 218
>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
proteins [Amino acid transport and metabolism].
Length = 460
Score = 37.0 bits (86), Expect = 0.037
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 12/74 (16%)
Query: 248 DAATYCGSNM--------LDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTF 299
DAA + G + D D I++ +K P G G ++ + + A F
Sbjct: 243 DAA-FGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIF 301
Query: 300 ---YGGGTVKISMA 310
Y G +
Sbjct: 302 ADYYLPGGGIPNFT 315
>gnl|CDD|221934 pfam13145, Rotamase_2, PPIC-type PPIASE domain.
Length = 121
Score = 34.3 bits (79), Expect = 0.058
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Query: 6 GDLGWVVRGSMVG-EFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKN 57
DL S + E +A F L V PI++ GY+++ V
Sbjct: 63 TDLDLFESDSDLPEELAEALFALKPGEV------SGPIESDNGYYLVRVTEIL 109
>gnl|CDD|235295 PRK04405, prsA, peptidylprolyl isomerase; Provisional.
Length = 298
Score = 35.9 bits (83), Expect = 0.071
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 20 FQDAAFKLPISTVNNPVYTEPPIKTKFGYHII-MVE--GKNHLKD 61
F+ AAFKL N YT P+KT +GY +I M++ K D
Sbjct: 205 FKTAAFKL-----KNGEYTTTPVKTTYGYEVIKMIKHPAKGTFSD 244
>gnl|CDD|107346 cd06351, PBP1_iGluR_N_LIVBP_like, N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the NMDA, AMPA, and kainate receptor subtypes
of ionotropic glutamate receptors (iGluRs). N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the NMDA, AMPA, and kainate receptor subtypes
of ionotropic glutamate receptors (iGluRs). While this
N-terminal domain belongs to the periplasmic-binding
fold type I superfamily, the glutamate-binding domain of
the iGluR is structurally homologous to the
periplasmic-binding fold type II. The LIVBP-like domain
of iGluRs is thought to play a role in the initial
assembly of iGluR subunits, but it is not well
understood how this domain is arranged and functions in
intact iGluR. Glutamate mediates the majority of
excitatory synaptic transmission in the central nervous
system via two broad classes of ionotropic receptors
characterized by their response to glutamate agonists:
N-methyl-aspartate (NMDA) and non-NMDA receptors. NMDA
receptors have intrinsically slow kinetics, are highly
permeable to Ca2+, and are blocked by extracellular Mg2+
in a voltage-dependent manner. On the other hand,
non-NMDA receptors have faster kinetics, are weakly
permeable to Ca2+, and are not blocked by extracellular
Mg2+. While non-NMDA receptors typically mediate
excitatory synaptic responses at resting membrane
potentials, NMDA receptors contribute to several forms
of synaptic plasticity and are suggested to play an
important role in the development of synaptic pathways.
Length = 328
Score = 33.3 bits (76), Expect = 0.46
Identities = 32/197 (16%), Positives = 62/197 (31%), Gaps = 47/197 (23%)
Query: 22 DAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNH---LKDICYLDYTGAGVYSQSQM 78
+ AF+ I +N P TK ++ V + L+ +C L GV +
Sbjct: 14 ELAFRAAIDALNTENLNALP--TKLSVEVVEVNTNDPFSLLRAVCDL-LVSQGVAA---- 66
Query: 79 NQTIEQLKENIFSHPHGNSV--LSDFCVSEIDQMRTKILQY-------FNTDSDHYSV-- 127
IF S + C D + + + + ++
Sbjct: 67 ----------IFGPTSSESASAVQSIC----DALEIPHISISGGSEGLSDKEESSTTLQL 112
Query: 128 -IFTSGATSAIKTVSEYFEFNEGSFIYLTDNHTSVLGMRELVKTNQI---------YSFS 177
A+ + EY+ + F + D+ + ++EL+ + I
Sbjct: 113 YPSLEDLADALLDLLEYYNWT--KFAIIYDSDEGLSRLQELLDESGIKGIQVTVRRLDLD 170
Query: 178 VDDARNMLNEFKESQEN 194
D+ R +L E K S+
Sbjct: 171 DDNYRQLLKELKRSESR 187
>gnl|CDD|132433 TIGR03392, FeS_syn_CsdA, cysteine desulfurase, catalytic subunit
CsdA. Members of this protein family are CsdS. This
protein, found Escherichia coli, Yersinia pestis,
Photorhabdus luminescens, and related species, and
related to SufS, works together with and physically
interacts with CsdE (a paralog of SufE). CsdA has
cysteine desulfurase activity that is enhanced by CsdE,
a sulfur acceptor protein. This gene pair, although
involved in FeS cluster biosynthesis, is not found next
to other such genes as are its paralogs from the Suf or
Isc systems [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 398
Score = 33.3 bits (76), Expect = 0.50
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 243 CFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKT--FY 300
V++D A D++ DF + S +K++G PTG+G L K + +L +
Sbjct: 188 AVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLYG-PTGIGVLYGKTE---LLEAMPPWQ 243
Query: 301 GGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISL 338
GGG + ++ + F I + +FE GT N +I L
Sbjct: 244 GGGKMLSHVSFDGF-IPQAVPH-RFEAGTPNIAGVIGL 279
>gnl|CDD|132444 TIGR03403, nifS_epsilon, cysteine desulfurase, NifS family, epsilon
proteobacteria type. Members of this family are the
NifS-like cysteine desulfurase of the epsilon division
of the Proteobacteria, similar to the NifS protein of
nitrogen-fixing bacteria. Like NifS, and unlike IscS,
this protein is found as part of a system of just two
proteins, a cysteine desulfurase and a scaffold, for
iron-sulfur cluster biosynthesis. This protein is called
NifS by Olsen, et al. (PMID:11123951), so we use this
designation.
Length = 382
Score = 32.9 bits (75), Expect = 0.60
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 238 CSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNK 297
C DA G +D+++ DF+S S +K G P G+G L + + L
Sbjct: 166 CKERGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHKFHG-PKGVGGLYI--RKGVELTP 222
Query: 298 TFYGG 302
F+GG
Sbjct: 223 LFHGG 227
>gnl|CDD|224010 COG1085, GalT, Galactose-1-phosphate uridylyltransferase [Energy
production and conversion].
Length = 338
Score = 31.2 bits (71), Expect = 2.1
Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 33/105 (31%)
Query: 46 FGYHIIMVEGKNHLKDICYLDYTGAGVYSQSQM-------NQTIEQLKEN-------IF- 90
G ++VE +H K + ++ + + +L E IF
Sbjct: 92 RGKSRVIVESPDHSKTL--------PELPVEEIEEVVKLWQERVRELYEREKYKYVQIFE 143
Query: 91 ----------SHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHY 125
HPHG V E+ + +Y+ +
Sbjct: 144 NKGKAAGASLPHPHGQIVALPVLPLEVARELRSAREYYEENGSCM 188
>gnl|CDD|215344 PLN02640, PLN02640, glucose-6-phosphate 1-dehydrogenase.
Length = 573
Score = 31.5 bits (71), Expect = 2.3
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 708 NFVVSGQFEANAENDWDQVLIETNDGLLSFQVTSQCTRCQYIYIDQETALNTDVPLGEYQ 767
+ V A++EN W +V++E G S + + + TRC Y+ +E D LG+
Sbjct: 210 DVVRCASLRASSENGWTRVIVEKPFGRDS-ESSGELTRCLKQYLTEEQIFRIDHYLGKEL 268
Query: 768 TRNFSTVSLNVKEFFNNL 785
N S + F+NL
Sbjct: 269 VENLSVLR------FSNL 280
>gnl|CDD|188573 TIGR04058, AcACP_reductase, long-chain fatty acyl-ACP reductase
(aldehyde-forming). This enzyme, found in
cyanobacteria, reduces a long-chain (mainly C16 or C18)
fatty acyl ACP ester to its corresponding fatty
aldehyde, releasing the acyl carrier protein (ACP).
NADPH or NADH is the reductant for this reaction. This
enzyme may be distantly related to the short-chain
dehydrogenase or reductase (SDR) family (pfam00106). The
purpose of this reaction is in the first step of alkane
biosynthesis (GenProp0942) [Central intermediary
metabolism, Other].
Length = 339
Score = 30.9 bits (70), Expect = 2.6
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 611 VEIGIDNEGLDLCTSKVCSDKITGFDCGNAVANWLDEQLNRKGLRLI 657
VE G+DL + V TG D G+AV WLD + L L+
Sbjct: 142 VEQAAPRLGIDLAQATVAVVGATG-DIGSAVCRWLDAKTGVAELLLV 187
>gnl|CDD|223485 COG0408, HemF, Coproporphyrinogen III oxidase [Coenzyme
metabolism].
Length = 303
Score = 30.8 bits (70), Expect = 2.7
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 376 PLVELYHDTDYGESK--YQ----GNIVNFNLLHKDGTYYG 409
P+VE + + E + +Q G V FNL++ GT +G
Sbjct: 219 PIVERRKNMPWTEREREFQLYRRGRYVEFNLVYDRGTLFG 258
>gnl|CDD|184944 PRK14982, PRK14982, acyl-ACP reductase; Provisional.
Length = 340
Score = 30.8 bits (70), Expect = 2.7
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 611 VEIGIDNEGLDLCTSKVCSDKITGFDCGNAVANWLDEQLNRKGLRLI 657
VE G+DL + V TG D G+AV WLD + L L+
Sbjct: 142 VEQNAPRLGIDLSKATVAVVGATG-DIGSAVCRWLDAKTGVAELLLV 187
>gnl|CDD|107388 cd06393, PBP1_iGluR_Kainate_GluR5_7, N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the GluR5-7 subunits of Kainate receptor.
N-terminal leucine/isoleucine/valine-binding protein
(LIVBP)-like domain of the GluR5-7 subunits of Kainate
receptor. While this N-terminal domain belongs to the
periplasmic-binding fold type I superfamily, the
glutamate-binding domain of the iGluR is structurally
homologous to the periplasmic-binding fold type II. The
LIVBP-like domain of iGluRs is thought to play a role in
the initial assembly of iGluR subunits, but it is not
well understood how this domain is arranged and
functions in intact iGluR. There are five types of
kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2,
which are structurally similar to AMPA and NMDA subunits
of ionotropic glutamate receptors. KA1 and KA2 subunits
can only form functional receptors with one of the
GluR5-7 subunits. Moreover, GluR5-7 can also form
functional homomeric receptor channels activated by
kainate and glutamate when expressed in heterologous
systems. Kainate receptors are involved in excitatory
neurotransmission by activating postsynaptic receptors
and in inhibitory neurotransmission by modulating
release of the inhibitory neurotransmitter GABA through
a presynaptic mechanism. Kainate receptors are closely
related to AMAP receptors. In contrast of AMPA
receptors, kainate receptors play only a minor role in
signaling at synapses and their function is not well
defined.
Length = 384
Score = 30.8 bits (69), Expect = 3.3
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 17/86 (19%)
Query: 117 YFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTDNHTSVLGMRELVKTNQIYSF 176
Y N D+ S+ + AI + +Y ++ + +Y D+ T ++ ++EL+ Y+
Sbjct: 116 YVNLYPDYASL------SHAILDLVQYLKWRSATVVY--DDSTGLIRLQELIMAPSRYNI 167
Query: 177 SV---------DDARNMLNEFKESQE 193
+ DDAR +L E K +E
Sbjct: 168 RLKIRQLPTDSDDARPLLKEMKRGRE 193
>gnl|CDD|236758 PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA;
Provisional.
Length = 413
Score = 30.1 bits (68), Expect = 4.6
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHII 51
GDLGW F+DA +L ++ PV++ FG+H+I
Sbjct: 321 GDLGWATPDIFDPAFRDALMRLNKGQISAPVHSS------FGWHLI 360
>gnl|CDD|100813 PRK01203, PRK01203, prefoldin subunit alpha; Provisional.
Length = 130
Score = 28.7 bits (64), Expect = 6.1
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 15/70 (21%)
Query: 69 GAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVI 128
G+GVY + +TIE+LKEN+ ++ K+ T D Y+ +
Sbjct: 76 GSGVYIAEERERTIERLKENL---------------EDLKDSIQKLNDQRKTLVDQYNTV 120
Query: 129 FTSGATSAIK 138
+ + AT +K
Sbjct: 121 YITEATRNVK 130
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 40,321,582
Number of extensions: 3893664
Number of successful extensions: 3300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3255
Number of HSP's successfully gapped: 54
Length of query: 815
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 710
Effective length of database: 6,280,432
Effective search space: 4459106720
Effective search space used: 4459106720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.0 bits)