RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16512
(815 letters)
>3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact;
peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} PDB:
3ui5_A 1fjd_A 1eq3_A
Length = 101
Score = 96.6 bits (241), Expect = 4e-24
Identities = 37/51 (72%), Positives = 46/51 (90%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
GDLGW+ RGSMVG FQ+AAF LP+S ++ PV+T+PP+KTKFGYHIIMVEG+
Sbjct: 50 GDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGR 100
>2exn_A Hypothetical protein BOR11; beta barrel containing fold,
autostructure, autoassign, structure, structural
genomics, PSI; NMR {Bordetella bronchiseptica} SCOP:
b.165.1.1
Length = 136
Score = 95.3 bits (237), Expect = 2e-23
Identities = 18/135 (13%), Positives = 44/135 (32%), Gaps = 14/135 (10%)
Query: 535 LVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKLEKNLCLVQPNFD 594
+ + P+ CG + ++W++ +G L + L L V +
Sbjct: 1 MSTTAYQPIAECGATTQSE-------AAAYQKRWLVANDAGQWLNRDLCPRLAEVSV--E 51
Query: 595 ITRNIMTLCYKSSGSTVEIGID---NEGLDLCTSKVCSDKITGFDCGNAVANWLDEQLNR 651
+ + L ++I +D ++ V + D G A W+
Sbjct: 52 LRMGYLVLKAPGM-LRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGELAAAWISNHAGV 110
Query: 652 KGLRLIRISKRSSKR 666
R++++ ++
Sbjct: 111 P-CRILKVHPDMAEV 124
>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS
peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1
PDB: 1jnt_A
Length = 92
Score = 78.0 bits (193), Expect = 9e-18
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKN 57
GDLG +G MV F F P+ P+ T+FGYHII V +N
Sbjct: 47 GDLGEFRQGQMVPAFDKVVFSCPVLEPTGPL------HTQFGYHIIKVLYRN 92
>2rqs_A Parvulin-like peptidyl-prolyl isomerase; CIS/trans isomerisation,
cenarcheaum symbiosum, low temperat NIMA-kinase, PIN1,
cell cycle; NMR {Cenarchaeum symbiosum}
Length = 97
Score = 75.7 bits (187), Expect = 6e-17
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 6/50 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 55
G LG+ RG MV F+DAAF+L + V+ PV K++FGYH+I G
Sbjct: 54 GSLGYFGRGKMVKPFEDAAFRLQVGEVSEPV------KSEFGYHVIKRLG 97
>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR
{Bacillus subtilis}
Length = 93
Score = 71.4 bits (176), Expect = 2e-15
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 6 GDLGWVVR-GSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
GDLGW + G M F AAFKL V++PV KT++GYHII +
Sbjct: 48 GDLGWFAKEGQMDETFSKAAFKLKTGEVSDPV------KTQYGYHIIKKTEE 93
>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase,
lipoprotein, membrane, palmitate, rotamase; NMR
{Staphylococcus aureus}
Length = 111
Score = 71.2 bits (175), Expect = 4e-15
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE 54
G+LG+V++G +F+ A FKL V+ V K+ FGYHII +
Sbjct: 68 GELGYVLKGQTDKDFEKALFKLKDGEVSEVV------KSSFGYHIIKAD 110
>4g2p_A Chaperone SURA; structural genomics, PSI-biology, midwest center
for structu genomics, MCSG, pcsep; 1.82A {Salmonella
enterica subsp}
Length = 110
Score = 71.1 bits (175), Expect = 4e-15
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
GDLGW F+DA KL ++ PV + FG+H+I +
Sbjct: 63 GDLGWATPDIFDPAFRDALTKLHKGQISAPV------HSSFGWHLIELLDT 107
>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter
jejuni}
Length = 252
Score = 73.7 bits (181), Expect = 1e-14
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
G+LGW + +MV F DAAF L T+ T P+KT FGYH+I+ E
Sbjct: 163 GELGWFDQSTMVKPFTDAAFALKNGTI-----TTTPVKTNFGYHVILKENS 208
>3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD,
small molecule, ppiase, cell cycle, nucleus,
phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens}
PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A
Length = 123
Score = 69.7 bits (171), Expect = 2e-14
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE 54
GDLG RG M F+DA+F L ++ PV T G HII+
Sbjct: 80 GDLGAFSRGQMQKPFEDASFALRTGEMSGPV------FTDSGIHIILRT 122
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain,
ordered linker; 1.60A {Candida albicans}
Length = 177
Score = 71.1 bits (174), Expect = 2e-14
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 55
GDLG+ +G M F++AAF L + V+N + +T G HI+ G
Sbjct: 134 GDLGFFSKGQMQPPFEEAAFNLHVGEVSNII------ETNSGVHILQRTG 177
>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1,
phosphorylation; NMR {Arabidopsis thaliana} SCOP:
d.26.1.1
Length = 139
Score = 69.8 bits (171), Expect = 2e-14
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 55
GDLG RG M F++A + L + +++ V T G HII
Sbjct: 96 GDLGSFGRGQMQKPFEEATYALKVGDISDIV------DTDSGVHIIKRTA 139
>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase
domain, 11189O3,PSI2., structural genomics; 1.55A
{Novosphingobium aromaticivorans}
Length = 112
Score = 68.5 bits (168), Expect = 3e-14
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
GDLGW+ + E A + + PV + + G+ I+ + K
Sbjct: 59 GDLGWIRLAQLPTELATTAASMGPGQLAGPV------EIRGGFSILYLIDK 103
>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase,
parvulin, cell inner membrane, cell membrane, membrane,
rotamase, stress response; NMR {Escherichia coli}
Length = 102
Score = 68.0 bits (167), Expect = 4e-14
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 11/53 (20%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLP--ISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
GD+GW+ ++ E ++A K +S IK+ G+ I+ ++
Sbjct: 50 GDMGWLEDATIPDELKNAGLKEKGQLSG---------VIKSSVGFLIVRLDDI 93
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant
(R14A), oncogenic transformation, small molecule cycle,
rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo
sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A*
2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A*
3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A*
1f8a_B* ...
Length = 166
Score = 69.8 bits (171), Expect = 5e-14
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE 54
GDLG RG M F+DA+F L ++ PV T G HII+
Sbjct: 123 GDLGAFSRGQMQKPFEDASFALRTGEMSGPV------FTDSGIHIILRT 165
>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans
isomerase domain, peptide, complex; 1.30A {Escherichia
coli} SCOP: d.26.1.1 PDB: 2pv2_A
Length = 103
Score = 65.4 bits (160), Expect = 3e-13
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
G +GW + G F A + P+ ++ G+HI+ V
Sbjct: 58 GQMGWGRIQELPGIFAQALSTAKKGDIVGPI------RSGVGFHILKVNDL 102
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.1 bits (168), Expect = 4e-12
Identities = 75/506 (14%), Positives = 156/506 (30%), Gaps = 150/506 (29%)
Query: 11 VVRGSMVGEFQDAAFKL-PI-------------STVNNPVYTEPPIKTKFGYHI--IMVE 54
V R + + A +L P + V V ++ K + I + +
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL- 189
Query: 55 GK--------NHLKDICYL---DYTGAGVYSQS---QMNQTIEQLKENIFSHPHGNS--V 98
L+ + Y ++T +S + +++ +L+ + S P+ N V
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 99 LSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTS---GATSAIKTVSEYFEFNEGSFIYLT 155
L + V K FN ++ T+ T + + + + LT
Sbjct: 250 LLN--VQN-----AKAWNAFNLSC---KILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 156 DNHT-----SVLGM------RELVKTN----QIYSFSVDDARNMLNEFK----------- 189
+ L RE++ TN I + S+ D + +K
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 190 ----ESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTV-----------HRNHVFKK 234
E E + + L V+P ++ L W + + H+ + +K
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 235 HFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFIS-----ISFYKMF-GYPTGLGALIVK 288
K S + L+LK + + + Y + + +
Sbjct: 420 QPKEST---ISIPSIY-------LELKVKLENEYALHRSIVDHYNIPKTFDS-------D 462
Query: 289 QKSAHVLNKTFY---GGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM 345
L++ FY G H+K E+ + +L + F +
Sbjct: 463 DLIPPYLDQYFYSHIG------------HHLKNIEHPERMTLFRMVFL-----DFRF--L 503
Query: 346 EKKRKSFTNAFELSQYTY-------FYFKQLSYSNGQP--LVELY------HDTDYGESK 390
E+K + + A+ S FY + ++ + LV + + SK
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 391 YQGNIVNFNLLHKDGTYY--GYSEVQ 414
Y +++ L+ +D + + +VQ
Sbjct: 564 YT-DLLRIALMAEDEAIFEEAHKQVQ 588
Score = 54.5 bits (130), Expect = 1e-07
Identities = 118/723 (16%), Positives = 218/723 (30%), Gaps = 202/723 (27%)
Query: 92 HPHGNSVLSDFCVSEIDQMRTKILQY----FNTDSDHYSVIFTSGATSAIKTVSEYFEFN 147
H H + + DF E IL F + D V +I + E
Sbjct: 1 HHHHHHM--DFETGEHQYQYKDILSVFEDAFVDNFDCKDV---QDMPKSILSKEEI---- 51
Query: 148 EGSFIYLTDNHTSVLGMRELV-----KTNQIYSFSVDDARNMLNEFKESQENVENMRHSN 202
I ++ + +V G L K ++ V++ + +F S E + S
Sbjct: 52 --DHIIMSKD--AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 203 SLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262
+Y + + L N N VF K+ SR ++ L A L +
Sbjct: 108 MTRMYIEQRD------RL--YND---NQVFAKYN-VSRLQPYLKLRQA---------LLE 146
Query: 263 HQP-DFISISFYKMFGYPTG---LGALIVKQKSAHVL--NKTFYGGGTVKISMANENFHI 316
+P + I + G +G + + K F+ +++ N N
Sbjct: 147 LRPAKNVLI--DGVLG--SGKTWVALDVCLSYKVQCKMDFKIFW------LNLKNCN--- 193
Query: 317 KKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQP 376
+ + E + L Y D ++T+ + S +
Sbjct: 194 SPETVLEMLQK----------LLYQID------PNWTSRSDHSSNIKLRIHSIQAE---- 233
Query: 377 LVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQ 436
L L Y LL VQN L C
Sbjct: 234 LRRLLKSKPYENC----------LLVLL-------NVQNAKAWNAFNL--SC-------- 266
Query: 437 RFLGLSDITIKFHFQQGHICGDDKDIIDG-KPTGSIRISYGHAS---NWDDVK-YFLSFL 491
+ L +T + K + D + IS H S D+VK L +L
Sbjct: 267 KIL----LTTR-----------FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 492 NQYF--L-QQADFVSIGDICLINNQRAESSKGFFLNHSDNINKEN--KLVSIYIYPVKAC 546
+ L ++ + + +I AES + L DN N KL +I +++
Sbjct: 312 DCRPQDLPREVLTTNPRRLSII----AESIRD-GLATWDNWKHVNCDKLTTI----IESS 362
Query: 547 GFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKLEKNLCLV--QPNFDITRNIMTLCY 604
V E FDR + + + L L L+ ++ +
Sbjct: 363 --LNVLEPAEYRKM---FDR--LSVFPPSAHIPTIL---LSLIWFDVIKSDVMVVVNKLH 412
Query: 605 KSS-------GSTVEIGIDNEGLDLCTSKVCSDKIT-------------GFDCGNAVANW 644
K S ST+ I + L ++ FD + + +
Sbjct: 413 KYSLVEKQPKESTISI----PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 645 LDEQL-NRKG--LRLIRISKRSSK-RNI-NSFSNMGQYLLITLPSIQAQLENLNAIFELE 699
LD+ + G L+ I +R + R + F + Q + + A LN + +L+
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 700 NFVNRFRSNFVVSGQFEANAENDWDQVLIETNDGLLSF--QVTSQCTRCQYIYIDQETAL 757
+ N + +++++ + +L F ++ +Y + + AL
Sbjct: 529 FYKPYICDN-----------DPKYERLV----NAILDFLPKIEENLICSKYTDLLR-IAL 572
Query: 758 NTD 760
+
Sbjct: 573 MAE 575
Score = 48.3 bits (114), Expect = 9e-06
Identities = 56/412 (13%), Positives = 116/412 (28%), Gaps = 136/412 (33%)
Query: 483 DVKYFLSFLNQYF--------LQQADFVSIGD--ICLINNQRAESSKGFF-----LNHS- 526
D K + D VS + +++ E + F +N+
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 527 --DNINKENKLVS----IYIYPV-KACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLT 579
I E + S +YI + +V +K+ V+ R
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-------RL---------QPY 137
Query: 580 QKLEKNLCLVQPNFDITRNIMTLCYKSSGSTVEIGIDNEGLDLCTSKVCSDK--ITGFDC 637
KL + L ++P ++ + + K+ + VC D
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTW------------V---ALDVCLSYKVQCKMDF 182
Query: 638 GNAVANWLDEQLNRKGLRLIRISKRSSKRNINSFSNMGQYLLITL-PSIQAQLENLNAIF 696
WL+ + +S + M Q LL + P+ ++ ++ + I
Sbjct: 183 K---IFWLN------------LKNCNSPETV---LEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 697 ELENFVNRFRSNFVVSGQFEANA----ENDWD-----------QVLIETNDGLLSFQVTS 741
+ + + S +E N N + ++L+ T ++ +++
Sbjct: 225 LRIHSIQAELRRLLKSKPYE-NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 742 QCTRCQYIYIDQ--------ET------ALNTDV-----------PL-----GE------ 765
T +I +D E L+ P E
Sbjct: 284 ATTT--HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 766 -----YQTRNFSTVSLNVKEFFNNLEKTYNQYNFCSSMILDE-TGIPT-VLC 810
++ N ++ ++ N LE + F + IPT +L
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal
5'-phosphate, thiocystei aminoacrylate, enzyme-product
complex; HET: PDA; 1.55A {Synechocystis SP} SCOP:
c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Length = 390
Score = 65.3 bits (160), Expect = 2e-11
Identities = 60/364 (16%), Positives = 118/364 (32%), Gaps = 63/364 (17%)
Query: 59 LKDICYLDYTGAGVYSQSQM-NQTIEQLK---ENIFSHPHGNSVLSDFCVSEIDQMRTKI 114
L + Y ++ G Q + +E + + + + + I Q+R +
Sbjct: 14 LANKTYFNFGG-----QGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQAL 68
Query: 115 LQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTD--NHTSVLGMRELVKTN- 171
+ FN D + + T T+ V ++++G I LTD + + ++ +
Sbjct: 69 AETFNVDPNT--ITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFG 126
Query: 172 -QIYSFSVDDARNMLNEFKESQENV-ENMRHSNSLFVYPAESNFSGTKYPLSW-CNTVHR 228
F V N + ++ R L + +G PL+ R
Sbjct: 127 ITYRFFPVAATLNQGDAAAVLANHLGPKTR----LVILSHLLWNTGQVLPLAEIMAVCRR 182
Query: 229 NHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVK 288
+ VL+D A GS LD + + D+ + + +K F P G+G L +
Sbjct: 183 HQ--------GNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIH 234
Query: 289 QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFE---------KFEDGTVNYLAIISLK 339
+N T+ G + I E +FE T Y L
Sbjct: 235 GDCLGEINPTYVGWRS-----------ITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLL 283
Query: 340 YGFDTMEK---KRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIV 396
++ + + + S++ + + L+ V S Q +V
Sbjct: 284 AALQLHQRQGTAEERYQAICQRSEFLW---RGLNQLPH---VHC-----LATSAPQAGLV 332
Query: 397 NFNL 400
+F +
Sbjct: 333 SFTV 336
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6,
pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A
{Pseudomonas fluorescens} SCOP: c.67.1.3
Length = 416
Score = 55.9 bits (135), Expect = 3e-08
Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 12/148 (8%)
Query: 238 CSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYK-MFGYPTGLGALIVKQKSAHVLN 296
+ D A G+ +DL Q D+ YK + G P + V + ++
Sbjct: 191 SHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVP 250
Query: 297 KTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFD-----TMEKKR-K 350
+ G A E + +G+ ++ GT ++ ++ G D M R K
Sbjct: 251 QPLSGWFGHSRQFAMEPRYEPSNGI-ARYLCGTQPITSLAMVECGLDVFAQTDMASLRRK 309
Query: 351 SFTNAFELSQYTYFYFKQLSYSNGQPLV 378
S L+ +Q ++ LV
Sbjct: 310 S----LALTDLFIELVEQRCAAHELTLV 333
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 54.0 bits (130), Expect = 9e-08
Identities = 48/351 (13%), Positives = 96/351 (27%), Gaps = 62/351 (17%)
Query: 88 NIFSHPHGNSVLSDFCVSEI-DQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF 146
F L + I D + ++ ++ D T+GA A V
Sbjct: 39 CDFCTTGR---LDEIKTPPIHDFIHNQLPKFLGCDV----ARVTNGAREAKFAVMHSL-A 90
Query: 147 NEGSFIYLTDN-HTSVLGMRELVKTNQIYSFSVDDARN---MLNEFKESQENVENMRHSN 202
+ +++ + +N H S E N I D + F ++ E E +
Sbjct: 91 KKDAWVVMDENCHYSSYVAAERAGLN-IALVPKTDYPDYAITPENFAQTIE--ETKKRGE 147
Query: 203 SLFVYPA-ESNFSGTKYPLSW-CNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM-LD 259
+ G + V +L++ A Y M +
Sbjct: 148 VVLALITYPDGNYGNLPDVKKIAKVCSEYDVP------------LLVNGA-YAIGRMPVS 194
Query: 260 LKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKD 319
LK+ DFI S +K +G + +K++ K
Sbjct: 195 LKEIGADFIVGSGHKSMAASGPIGVMGMKEE---WAEIVLRRSEKYK------------- 238
Query: 320 GLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE 379
+ T II+L F + ++ K + E ++ ++L
Sbjct: 239 NKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLGI-------- 290
Query: 380 LYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHC 430
G++ + +++ F+ L + H
Sbjct: 291 ----KQLGDNPHNHDLMFFHAEVLYE--ISKKAKGGRFFLYRELKSRKIHG 335
>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable
chaperon unknown function; 3.10A {Leptospira interrogans
serovar copenhaorganism_taxid}
Length = 325
Score = 53.4 bits (128), Expect = 1e-07
Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 15/54 (27%)
Query: 6 GDLGWVVRGSMVGEFQ---DAAFKLP---ISTVNNPVYTEPPIKTKFGYHIIMV 53
G + W+ + + A LP +S + + + I+
Sbjct: 216 GMVEWISSFDLYKYSKITATIAAPLPNGGVS---------EVFRDERKRYCILK 260
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.7 bits (131), Expect = 1e-07
Identities = 77/516 (14%), Positives = 134/516 (25%), Gaps = 203/516 (39%)
Query: 64 YLDYTGAGVYSQSQMNQTIEQLKE--NIFSHP--HGNSV------LSDFCVSEIDQMRTK 113
+L Y + + S++ Q + L F + GN + L + + + +
Sbjct: 64 FLGYV-SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 114 ILQYFN--------TDSDHYSVIFTSGATSAIK---------TVSEYFEFNEGSFIYLTD 156
I Y D S +F + + +YFE E
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE--E-------- 172
Query: 157 NHTSVLGMRELVKTNQIYSFSVDD----ARNMLNEFKESQENVENMRHSNSLFVY----- 207
+R+L +T Y V D + L+E + + E + + L +
Sbjct: 173 -------LRDLYQT---YHVLVGDLIKFSAETLSELIRTTLDAEKV-FTQGLNILEWLEN 221
Query: 208 ----PAESNFSGTKYPLSW--------CNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS 255
P + P+S + V V K + L AT
Sbjct: 222 PSNTPDKDYLLS--IPISCPLIGVIQLAHYV----VTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 256 NML------------DLKQHQPDFISISFYKMFG------YPT--------------GLG 283
++ I++ F+ G YP G
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFF--IGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 284 A----LIVK-------QKSAHVLNKTFYGGGTVKISMAN--ENFHIKKDGLFEKFEDGTV 330
L + Q + N G V+IS+ N +N
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL---------------- 377
Query: 331 NYLAII-----SLKYGFDT-MEK---------------KRK-SFTNAFEL-------SQY 361
++ SL YG + + K +RK F+N F L S
Sbjct: 378 ----VVSGPPQSL-YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF-LPVASPFHSHL 431
Query: 362 ---------TYFYFKQLSYSNGQPLVELYHDTDYGE--SKYQGNI------------VNF 398
+S++ + +Y D G G+I V +
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD-GSDLRVLSGSISERIVDCIIRLPVKW 490
Query: 399 -NLLHKDGTY---YGYSEVQNLANL-KKIQLRTGCH 429
T+ +G L L + + TG
Sbjct: 491 ETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVR 526
Score = 50.8 bits (121), Expect = 2e-06
Identities = 74/487 (15%), Positives = 135/487 (27%), Gaps = 188/487 (38%)
Query: 336 ISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQL----SYSNGQPLVELYHD---TDYGE 388
++L +G S + + ++F QL + +P D T E
Sbjct: 9 LTLSHG---------SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE 59
Query: 389 --SKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITI 446
K+ G + + L + + +V NL L + + +L +DI
Sbjct: 60 LVGKFLGYVSS---LVEPSKVGQFDQVLNLC-LTEFE------------NCYLEGNDI-- 101
Query: 447 KFHFQQGHICGDD-------KDII---------DGKPTGSIRIS--YGHASNWDDVKYFL 488
H + ++ K++I +P S + + +
Sbjct: 102 --HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE-GNAQLVA 158
Query: 489 SF-----LNQYF--LQQ---------ADFVSIGDICLINNQRAES------SKGF----F 522
F + YF L+ D + L R ++G +
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 523 LNHSDNINKENKLVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKL 582
L + N ++ L+SI P+ S PL
Sbjct: 219 LENPSNTPDKDYLLSI---PI------------------------------S-CPL---- 240
Query: 583 EKNLCLVQ-PNFDITRNIM-----TLCYKSSGSTVEIGIDNEGLDLCTSKVCSDKITGFD 636
+ ++Q ++ +T ++ L G+T L T+ +
Sbjct: 241 ---IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH------SQGLVTAVAIA------- 284
Query: 637 CGNAVANWLD-EQLNRKGLRL-----IR-------------ISKRSSKRNINSFSNMGQY 677
+W RK + + +R I + S + N S M
Sbjct: 285 ---ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM--- 338
Query: 678 LLI---TLPSIQAQLENLNAIFELEN-----FVNRFRSNFVVSG----------QFE-AN 718
L I T +Q + N+ VN + N VVSG A
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK-NLVVSGPPQSLYGLNLTLRKAK 397
Query: 719 AENDWDQ 725
A + DQ
Sbjct: 398 APSGLDQ 404
Score = 39.3 bits (91), Expect = 0.007
Identities = 58/316 (18%), Positives = 101/316 (31%), Gaps = 120/316 (37%)
Query: 163 GM-RELVKTNQIY-SFSVDDARNMLNE----FKES-----QENVENMRHSN--SLFVYPA 209
GM +L Y + A+++ N FK++ + V N N +L ++
Sbjct: 1630 GMGMDL------YKTSKA--AQDVWNRADNHFKDTYGFSILDIVIN----NPVNLTIH-- 1675
Query: 210 ESNFSGTK-------YP-LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-MLDL 260
F G K Y + + V +K FK + + T+ +L
Sbjct: 1676 ---FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEH----STSYTFRSEKGLLSA 1728
Query: 261 KQH-QPD-F-ISISFYKM----FGYPTG-------LG---ALIVKQKSAHVLNKTFYGGG 303
Q QP + + ++ P LG AL A V+ +
Sbjct: 1729 TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALAS---LADVM--SI--ES 1781
Query: 304 TVKISMANENFHIKKDGLF-----EKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFEL 358
V++ + G+ + E G NY +I++ G + SF+ L
Sbjct: 1782 LVEV--------VFYRGMTMQVAVPRDELGRSNY-GMIAINPG-----RVAASFSQE-AL 1826
Query: 359 SQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYY---G------ 409
+++ G LVE IVN+N+ + Y G
Sbjct: 1827 QYVV----ERVGKRTGW-LVE---------------IVNYNV---ENQQYVAAGDLRALD 1863
Query: 410 -YSEVQNLANLKKIQL 424
+ V N L+KI +
Sbjct: 1864 TVTNVLNFIKLQKIDI 1879
Score = 37.0 bits (85), Expect = 0.028
Identities = 13/87 (14%), Positives = 34/87 (39%), Gaps = 20/87 (22%)
Query: 101 DFCVSEIDQMRTKILQY--FNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTDNH 158
+ V + + +++ +N ++ Y V +G A+ TV+ F + I
Sbjct: 1827 QYVVERVGKRTGWLVEIVNYNVENQQY-VA--AGDLRALDTVTNVLNFIKLQKI------ 1877
Query: 159 TSVLGMRELVKTNQIYSFSVDDARNML 185
++++ + S S+++ L
Sbjct: 1878 -------DIIELQK--SLSLEEVEGHL 1895
Score = 35.0 bits (80), Expect = 0.12
Identities = 30/147 (20%), Positives = 43/147 (29%), Gaps = 39/147 (26%)
Query: 681 TLPSIQ---AQLENLNAIFELENFVNRFRSNFVVSGQFEANAENDWDQVL---------- 727
LP A + EL V +F +V S E + +DQVL
Sbjct: 40 ILPEPTEGFAADDEPTTPAEL---VGKF-LGYVSS-LVEPSKVGQFDQVLNLCLTEFENC 94
Query: 728 -IETND------GLLSFQVTSQCTRCQYI--YIDQETALNTDVP-------LGEYQTRNF 771
+E ND LL T+ + I YI N
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 772 STVSL-----NVKEFFNNLEKTYNQYN 793
V++ N ++F L Y Y+
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYH 181
Score = 34.3 bits (78), Expect = 0.22
Identities = 35/246 (14%), Positives = 67/246 (27%), Gaps = 84/246 (34%)
Query: 19 EFQDAAFKLPISTV--NNPVYTEPPIKTKFGYHIIMVEGK----NHLKDICYLDYTGAGV 72
+ I + NNP + FG +GK N+ + + +
Sbjct: 1651 NHFKDTYGFSILDIVINNP----VNLTIHFG----GEKGKRIRENYSA-MIFETIVDGKL 1701
Query: 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSD--------FCVS--EIDQMRTKILQYFNTDS 122
++ + E F G +LS + + +++K +
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKG--LLSATQFTQPALTLMEKAAFEDLKSK----GLIPA 1755
Query: 123 D-----H----YS-------VIFTSGATSAIKTVSEYFEFNEGSFIYLT---DNH-TSVL 162
D H Y+ V+ S ++ V F G + + D S
Sbjct: 1756 DATFAGHSLGEYAALASLADVMSIE---SLVEVV-----FYRGMTMQVAVPRDELGRSNY 1807
Query: 163 GMRELVKTNQIYSFSVDDARNMLNEFKES--QENVENMRHSNSLFVYPAESNF------- 213
GM +++ R + F + Q VE + V N+
Sbjct: 1808 GM-----------IAINPGR-VAASFSQEALQYVVERVGKRTGWLVEIV--NYNVENQQY 1853
Query: 214 --SGTK 217
+G
Sbjct: 1854 VAAGDL 1859
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase,
pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy
hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A
{Homo sapiens} PDB: 2hzp_A*
Length = 465
Score = 53.1 bits (127), Expect = 2e-07
Identities = 44/344 (12%), Positives = 96/344 (27%), Gaps = 50/344 (14%)
Query: 42 IKTKFGYHIIMVEGKNHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSD 101
I + + N ++ Y G+ + E+L + +G+ V
Sbjct: 48 IPKIQDLPPVDLSLVNKDENAIYFLGNSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKR 107
Query: 102 FCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAI---------------KTVSEYFEF 146
++ + + + + + + T + K + E F
Sbjct: 108 PWITGDESIVGLMKDIVGANEK--EIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAF 165
Query: 147 NEGSFIYLTDNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFV 206
S Y ++ + G+ ++ + + + E E S ++ +
Sbjct: 166 P--SDHYAIESQLQLHGLN--IEESMRMIKPREGEETLRIEDILEVI--EKEGDSIAVIL 219
Query: 207 YPAESNFSGTKYPL-SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQP 265
+ ++G + + + C+V D A G+ L L
Sbjct: 220 FSGVHFYTGQHFNIPAITKAGQAK------------GCYVGFDLAHAVGNVELYLHDWGV 267
Query: 266 DFISISFYK-MFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMA---NENFHIKKDGL 321
DF YK + G+ + +K AH + G ++S + +
Sbjct: 268 DFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGV- 326
Query: 322 FEKFEDGTVNYLAIISL--------KYGFDTMEKKRKSFTNAFE 357
F L + SL + + KK T E
Sbjct: 327 -CGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLE 369
>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A,
periplasmic molecular chaperone, membrane protein
folding, GRAM negative bacteria; 3.00A {Escherichia
coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A
Length = 408
Score = 52.8 bits (126), Expect = 2e-07
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
GDLGW F+DA +L ++ P+ + FG+H+I +
Sbjct: 319 GDLGWATPDIFDPAFRDALTRLNKGQMS------APVHSSFGWHLIELLDT 363
Score = 50.1 bits (119), Expect = 2e-06
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
G +GW + G F A + PI++ G+HI+ V
Sbjct: 209 GQMGWGRIQELPGIFAQALSTAKKGDIV------GPIRSGVGFHILKVNDL 253
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase;
HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Length = 420
Score = 45.2 bits (108), Expect = 6e-05
Identities = 52/228 (22%), Positives = 77/228 (33%), Gaps = 76/228 (33%)
Query: 245 VLLDAATYCGSNMLDLKQ---HQP--------DFISISFYKMFGYPTGLGALIVKQKSAH 293
VL+DA Q H P D++ S +KM PTG+G L K+
Sbjct: 202 VLVDAC-----------QSAPHYPLDVQLIDCDWLVASGHKMCA-PTGIGFLYGKE---E 246
Query: 294 VLNKT--FYGGG----TVKISMANENFHIKKDGLFEKFEDGTVNYLAIISL--------K 339
+L F+GGG V + L KFE GT I+L
Sbjct: 247 ILEAMPPFFGGGEMIAEV--FFDHFTTG----ELPHKFEAGTPAIAEAIALGAAVDYLTD 300
Query: 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFN 399
G + + EL+ Y + + L + LY + + +FN
Sbjct: 301 LGMENIHNYEV------ELTHYLW---QGLGQIPQ---LRLYGPNPKHGDR--AALASFN 346
Query: 400 L--LHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQ---RFLGLS 442
+ LH S+V + + I +R+G HC Q R S
Sbjct: 347 VAGLHA-------SDVATMVDQDGIAIRSGHHC----TQPLHRLFDAS 383
Score = 29.8 bits (68), Expect = 3.6
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 111 RTKILQYFNTDSDHYSVIFTSGATSAIKTV 140
R K+ ++ N S +++T AT AI V
Sbjct: 78 RNKVAKFINARSPR-EIVYTRNATEAINLV 106
>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A
{Campylobacter jejuni}
Length = 252
Score = 44.1 bits (104), Expect = 8e-05
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 6/55 (10%)
Query: 2 QCLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
L + + ++P+ + + P + K GY + V+ K
Sbjct: 158 TILKPQNASLNTSNADPRLLGLLSQIPVGSFS------PVLNGKNGYELYEVKSK 206
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium
tuberculosis}
Length = 406
Score = 43.7 bits (104), Expect = 2e-04
Identities = 40/260 (15%), Positives = 77/260 (29%), Gaps = 74/260 (28%)
Query: 245 VLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGT 304
V++D + +LD+++ D ++++ + G P + V+N G+
Sbjct: 198 VVVDHSAAAPYRLLDIRETDADVVTVNAHAWGG-PPIGAMVFRDP---SVMNSF----GS 249
Query: 305 VKISMANENFHIKKDGLFEKFEDGT------------VNYLAIISLKYGFDTMEKKRKSF 352
V + + E G + YLA + E+ S
Sbjct: 250 VSTNPYAT--------GPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSM 301
Query: 353 TNAF----ELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYY 408
+A + Y L PLV L G + Q +V+F +
Sbjct: 302 QSADAYLNRVFDYLM---VSLR---SLPLVML-----IGRPEAQIPVVSFAV---HK-VP 346
Query: 409 GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPT 468
VQ LA+ + + LG++D+
Sbjct: 347 ADRVVQRLADNGILAIANTGSR----VLDVLGVNDV-----------------------G 379
Query: 469 GSIRISYGHASNWDDVKYFL 488
G++ + H S +V +
Sbjct: 380 GAVTVGLAHYSTMAEVDQLV 399
Score = 31.8 bits (73), Expect = 0.91
Identities = 10/80 (12%), Positives = 23/80 (28%), Gaps = 7/80 (8%)
Query: 64 YLDYTGAGVYSQ--SQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTD 121
+ D AG + T+ + G + + +D R + N D
Sbjct: 29 HFD-APAG--MLIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNAD 85
Query: 122 SDHYSVIFTSGATSAIKTVS 141
V+ + + ++
Sbjct: 86 PGG--VVLGADRAVLLSLLA 103
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 37.9 bits (89), Expect = 0.011
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 26/104 (25%)
Query: 248 DAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGG----- 302
DA G +DL Q + D +S S +K++G P G+GAL V++K + +GG
Sbjct: 199 DATQSVGKLPIDLSQLKVDLMSFSGHKIYG-PKGIGALYVRRKPRVRIEAQMHGGGHERG 257
Query: 303 ---GTV---------------KISMANENFHIKKDGLFEKFEDG 328
GT+ K MA E ++ L + +G
Sbjct: 258 MRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRG--LRNRLWNG 299
>3vne_A Membrane-associated protein VP24; interferon antagonist, STAT1,
zaire, sudan VP35, karyopherin alpha, IFN response
pathway, viral protei; 2.00A {Sudan ebolavirus} PDB:
3vnf_A 4d9o_A
Length = 224
Score = 32.4 bits (73), Expect = 0.42
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 546 CGFFKVES--KWEVTASGLKFDRQWMIITHSGVPLTQKLEKNLCLVQPNFDITRNIMTLC 603
C F + W+V +GL+FD + G+ L +L+ N P + +TRN+
Sbjct: 19 CNFLVTPTVQGWKVYWAGLEFD-----VNQKGITLLNRLKVND--FAPAWAMTRNLFPHL 71
Query: 604 YKSSGSTVE 612
+K+ S V+
Sbjct: 72 FKNQQSEVQ 80
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal
binding protein complex; HET: PLP EPE; 2.53A
{Archaeoglobus fulgidus} PDB: 4eb7_A*
Length = 382
Score = 32.4 bits (75), Expect = 0.57
Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 28/104 (26%)
Query: 248 DAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGG----- 302
DA G +D+++ D ++IS ++G P G+GAL +++++ L GG
Sbjct: 173 DATASVGQIEVDVEKIGADMLTISSNDIYG-PKGVGALWIRKEAK--LQPVILGGGQENG 229
Query: 303 ---GTV---------------KISMANENFHIKKDGLFEKFEDG 328
G+ + E +++ L ++ D
Sbjct: 230 LRSGSENVPSIVGFGKAAEITAMEWREEAERLRR--LRDRIIDN 271
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 31.6 bits (72), Expect = 1.0
Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 238 CSRSNCFVLLDAATYCGSNMLDLKQHQP--------DFISISFYKMFGYPTGLGALIVKQ 289
C R ++ +DAA + GS +L + H+ D ++ + +K+ AL+++
Sbjct: 285 CQRHGLWLHVDAA-WGGSVLL-SQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQD 342
Query: 290 KSAHVLNKTF 299
S ++L +
Sbjct: 343 TS-NLLKRCH 351
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 30.8 bits (70), Expect = 2.2
Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 238 CSRSNCFVLLDAATYCGSNMLDLKQHQP--------DFISISFYKMFGYPTGLGALIVKQ 289
C + N ++ +DAA + G ++ ++H+ + ++ + +KM G A++VK+
Sbjct: 271 CEKYNLWLHVDAA-WGGGLLM-SRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKE 328
Query: 290 KSAHV 294
K
Sbjct: 329 KGILQ 333
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal
phosphate, structural PSI, protein structure initiative;
HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB:
1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Length = 406
Score = 30.1 bits (69), Expect = 2.7
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 111 RTKILQYFNTDSDHYSVIFTSGATSAIKTV 140
R + + N S ++F G T I V
Sbjct: 73 RKRASLFINARSAE-ELVFVRGTTEGINLV 101
>3h5l_A Putative branched-chain amino acid ABC transporter; structural
genomics, PSI-2, protein structure initiative; 1.70A
{Ruegeria pomeroyi}
Length = 419
Score = 30.2 bits (68), Expect = 3.1
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 5/46 (10%)
Query: 260 LKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTV 305
L+ P I ++ + YP AL + Q N Y
Sbjct: 215 LRADPPAVIVVTHF----YPQD-QALFMNQFMTDPTNSLVYLQYGA 255
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 29.8 bits (68), Expect = 3.3
Identities = 6/39 (15%), Positives = 17/39 (43%)
Query: 99 LSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAI 137
D+ + ++Q+R ++ + SV+ + A+
Sbjct: 31 DDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAV 69
>2aaz_A TS, tsase, thymidylate synthase; methyl transferase, nucleotide
biosynthesis, transferase; HET: UMP CB3; 2.08A
{Filobasidiella neoformans}
Length = 317
Score = 28.8 bits (65), Expect = 8.0
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQM 110
DY G GV Q+ + I+ +K N +LS + ++ M
Sbjct: 141 ADGDYKGKGV---DQLQRVIDTIKNNPTDRRI---ILSAWNPKDLPLM 182
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 28.9 bits (65), Expect = 8.3
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Query: 93 PHGNS------VLSDFCVSEIDQMRTKILQYFN 119
P+G++ +L+D S+ + IL+YFN
Sbjct: 162 PYGHTKYAIENILNDLYNSDKKSWKFAILRYFN 194
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate,
transferase; HET: PLP SLP; 1.55A {Rattus norvegicus}
PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Length = 432
Score = 28.7 bits (65), Expect = 8.4
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 6/42 (14%)
Query: 107 IDQMRTKILQYFNTDSDHYSVIFTSGAT----SAIKTVSEYF 144
I+ R + + +IFTSG T I + F
Sbjct: 63 INTARASLAKMIGGKPQ--DIIFTSGGTESNNLVIHSTVRCF 102
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A
{Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Length = 515
Score = 29.0 bits (65), Expect = 8.5
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQM 110
+ DYTG G+ Q+ + I ++K N ++ + VS++ +M
Sbjct: 351 MHADYTGKGI---DQLAEIINRIKTNPNDRRL---IVCSWNVSDLKKM 392
>1f28_A Thymidylate synthase; beta-sheet, protein-inhibitor complex,
transferase; HET: UMP F89; 1.90A {Pneumocystis carinii}
SCOP: d.117.1.1 PDB: 1ci7_A*
Length = 297
Score = 28.4 bits (64), Expect = 8.6
Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQM 110
C +Y G GV Q+ I++++ + + +LS + +++++M
Sbjct: 127 CKTNYIGQGV---DQLANIIQKIRTSPYDRRL---ILSAWNPADLEKM 168
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,124,251
Number of extensions: 718477
Number of successful extensions: 1538
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1500
Number of HSP's successfully gapped: 68
Length of query: 815
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 714
Effective length of database: 3,881,772
Effective search space: 2771585208
Effective search space used: 2771585208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)