RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16512
(815 letters)
>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 408
Score = 103 bits (257), Expect = 3e-24
Identities = 72/441 (16%), Positives = 135/441 (30%), Gaps = 58/441 (13%)
Query: 56 KNHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKIL 115
+ + + YLD ++ + + + + + + G LS + +R K+
Sbjct: 17 EINGHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVA 76
Query: 116 QYFNTDSDHYSVIF--TSGATSAIKTVSEYFEFNEGSFIYLTD-NHTSVLGMRELVKTNQ 172
++ N S V + A + + G I T H S L ++V
Sbjct: 77 KFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKT 136
Query: 173 IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVF 232
+ + E + + + L SN G P +
Sbjct: 137 G--AVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQA-- 192
Query: 233 KKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSA 292
VL+DA LD++ D++ S + PTG+G L K++
Sbjct: 193 ---------GAKVLVDACQSAPHYPLDVQLIDCDWLVASGH-KMCAPTGIGFLYGKEEIL 242
Query: 293 HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF 352
F+GGG + + ++F L KFE GT I+L D +
Sbjct: 243 E-AMPPFFGGGEMIAEVFFDHFTT--GELPHKFEAGTPAIAEAIALGAAVDYLTDLGMEN 299
Query: 353 TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSE 412
+ +E+ Y + + + + +FN+ S+
Sbjct: 300 IHNYEVELTHYLWQGLGQIPQL------RLYGPNPKHGDRAALASFNVAGLHA-----SD 348
Query: 413 VQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIR 472
V + + I +R+G HC + F +GS R
Sbjct: 349 VATMVDQDGIAIRSGHHCTQPLHRLF---------------------------DASGSAR 381
Query: 473 ISYGHASNWDDVKYFLSFLNQ 493
S + +++ FL L
Sbjct: 382 ASLYFYNTKEEIDLFLQSLQA 402
>d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella
bronchiseptica [TaxId: 518]}
Length = 128
Score = 93.1 bits (231), Expect = 5e-23
Identities = 16/132 (12%), Positives = 41/132 (31%), Gaps = 8/132 (6%)
Query: 535 LVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKLEKNLCLVQPNFD 594
+ + P+ CG + + ++W++ +G L + L L V
Sbjct: 1 MSTTAYQPIAECGATTQ-------SEAAAYQKRWLVANDAGQWLNRDLCPRLAEVSVELR 53
Query: 595 ITRNIMTLCYKSSGSTVEIGIDNEGLDLCTSKVCSDKITGFDCGNAVANWLDEQLNRKGL 654
+ ++ I+++ V + D G A W+
Sbjct: 54 MGYLVLKAPGMLRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGELAAAWISNHAGVP-C 112
Query: 655 RLIRISKRSSKR 666
R++++ ++
Sbjct: 113 RILKVHPDMAEV 124
>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli
[TaxId: 562]}
Length = 391
Score = 99.2 bits (246), Expect = 9e-23
Identities = 76/436 (17%), Positives = 138/436 (31%), Gaps = 72/436 (16%)
Query: 64 YLDYTGAGVYSQSQMNQTIEQL-KENIFSHPH-GNSVLSDFCVSEIDQMRTKILQYFNTD 121
YLDY+ + ++ + + F +P + +D R +I D
Sbjct: 5 YLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGAD 64
Query: 122 SDHYSVIFTSGATSAIKTVSEYFEFNEGS----FIYLTDNHTSVLGMRELVKTNQIYSFS 177
++FTSGAT + + I H +VL ++ F
Sbjct: 65 PRE--IVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLERE---GFE 119
Query: 178 VDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFK 237
V N + +E MR L +N G ++ + R
Sbjct: 120 VTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRAR------- 172
Query: 238 CSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNK 297
+DA G +DL Q + D +S S +K++G G+GAL V++K +
Sbjct: 173 ----GIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPK-GIGALYVRRKPRVRIEA 227
Query: 298 TFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFE 357
+GGG + + + G+ G K + T
Sbjct: 228 QMHGGGHERGMRSGTLPVHQIVGM-------------------GEAYRIAKEEMATEMER 268
Query: 358 LSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA 417
L + + V L D ++G NI+N + + +G +
Sbjct: 269 LRGLRNRLWNGIKDIEE---VYLNGDLEHG----APNILNVSFNYVEG-------ESLIM 314
Query: 418 NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGH 477
LK + + +G C S + L + + D SIR S G
Sbjct: 315 ALKDLAVSSGSACTSASLEPSYVLRAL----------------GLNDELAHSSIRFSLGR 358
Query: 478 ASNWDDVKYFLSFLNQ 493
+ +++ Y + + +
Sbjct: 359 FTTEEEIDYTIELVRK 374
>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase
{Escherichia coli [TaxId: 562]}
Length = 405
Score = 94.2 bits (233), Expect = 4e-21
Identities = 76/446 (17%), Positives = 148/446 (33%), Gaps = 71/446 (15%)
Query: 56 KNHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKIL 115
+ + + YLD + ++ E + + G LS +++ +R +
Sbjct: 17 EVNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRAS 76
Query: 116 QYFNTDSDHYSVIFTSGATSAIKTVSE---YFEFNEGSFIYLT--DNHTSVLGMRELVKT 170
+ N S ++F G T I V+ G I ++ ++H +++ + L
Sbjct: 77 LFINARSAEE-LVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCAR 135
Query: 171 N--QIYSFSVDDARNMLNEFKESQENVENMRHSN-SLFVYPAESNFSGTKYPLSWCNTVH 227
++ ++ + E + + L SN GT+ PL+ T+
Sbjct: 136 VGAELRVIPLNP------DGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLA 189
Query: 228 RNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIV 287
H VL+D A + +D++ DF S +K++G PTG+G L V
Sbjct: 190 HQH-----------GAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYG-PTGIGILYV 237
Query: 288 KQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK 347
K+ + GG + +E K +FE GT N II L + +
Sbjct: 238 KEALLQEMPPWEGGGSMIATVSLSEGTTWTKAP--WRFEAGTPNTGGIIGLGAALEYVSA 295
Query: 348 KRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTY 407
+ +E + Y + +E D + + ++ FNL
Sbjct: 296 LGLNNIAEYEQNLMHYALSQ----------LESVPDLTLYGPQNRLGVIAFNLGKHHA-- 343
Query: 408 YGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKP 467
+V + + I +RTG HC + +
Sbjct: 344 ---YDVGSFLDNYGIAVRTGHHCAMP-LMAYYNV-------------------------- 373
Query: 468 TGSIRISYGHASNWDDVKYFLSFLNQ 493
R S + ++V ++ L +
Sbjct: 374 PAMCRASLAMYNTHEEVDRLVTGLQR 399
>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase
{Thermotoga maritima [TaxId: 2336]}
Length = 376
Score = 75.1 bits (183), Expect = 6e-15
Identities = 65/433 (15%), Positives = 125/433 (28%), Gaps = 68/433 (15%)
Query: 64 YLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSD 123
Y D + + I +E + +P+ + +++ R K+ +
Sbjct: 4 YFDNNATTRVDDRVLEEMIVFYREK-YGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPS 62
Query: 124 HYSVIFTSGATSAIKTV---SEYFEFNEGSFIYLTDNHTSVLGMRELVKTNQIYSFSVDD 180
+ FTS AT +I + I T + E +K + F V
Sbjct: 63 E--IFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKA--VLETMKYLSMKGFKVKY 118
Query: 181 ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSR 240
+ +E + + L A +N GT P+ + + +
Sbjct: 119 VPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDA 178
Query: 241 SNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFY 300
G L++ + D+ S S +K G P G+G +++ + +
Sbjct: 179 VQT---------IGKIPFSLEKLEVDYASFSAHKFHG-PKGVGITYIRKG--VPIRPLIH 226
Query: 301 GGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQ 360
GGG + GT N I+ + ++ E +
Sbjct: 227 GGGQER-----------------GLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLR 269
Query: 361 YTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK 420
L N ++ + + G S +QNL +
Sbjct: 270 SKLVSGLM----------NLGAHIITPLEISLPNTLSVSFPNIRG-----STLQNLLSGY 314
Query: 421 KIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASN 480
I + T C + H+ D + G+IRIS +
Sbjct: 315 GIYVSTSSACTSKD---------------ERLRHVL-DAMGVDRRIAQGAIRISLCKYNT 358
Query: 481 WDDVKYFLSFLNQ 493
++V YFL + +
Sbjct: 359 EEEVDYFLKKIEE 371
>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14
[TaxId: 9606]}
Length = 96
Score = 59.7 bits (144), Expect = 9e-12
Identities = 37/56 (66%), Positives = 46/56 (82%)
Query: 1 MQCLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
GDLGW+ RGSMVG FQ+AAF LP+S ++ PV+T+PP+KTKFGYHIIMVEG+
Sbjct: 40 KARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGR 95
>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 59.4 bits (142), Expect = 8e-10
Identities = 34/332 (10%), Positives = 77/332 (23%), Gaps = 27/332 (8%)
Query: 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTDNHTSVLGMRE 166
+D+++ I F T + +++ + A++ SF+ + +
Sbjct: 54 MDEIKEGIQYVFQTR-NPLTLVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQRAVDI 112
Query: 167 LVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTV 226
+ D + + ++ L +T
Sbjct: 113 GERIGARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHG--------------ESSTG 158
Query: 227 HRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALI 286
+ C R C +L+D+ G L + + D + K P G +
Sbjct: 159 VLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAPPGTSLIS 218
Query: 287 VKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME 346
K K K + + + ++ + Y
Sbjct: 219 FSDK-----AKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESL 273
Query: 347 KKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT 406
Q+ L D + + +
Sbjct: 274 ALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKD----PALRLPTVTTVAV---PAG 326
Query: 407 YYGYSEVQNLANLKKIQLRTGCHCNPGSCQRF 438
Y V + + I++ G + G R
Sbjct: 327 YDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRI 358
>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase
{Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}
Length = 377
Score = 56.3 bits (134), Expect = 7e-09
Identities = 34/332 (10%), Positives = 86/332 (25%), Gaps = 31/332 (9%)
Query: 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTDNHTSVLGMRE 166
+D++++ + + T+ + ++ + T+A++ + + +
Sbjct: 53 MDEIQSLLRYVWQTE-NPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDM 111
Query: 167 LVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTV 226
+ + + + H ++ +G + PL +
Sbjct: 112 AGRYGADVRTISKPWGEVFSLE---ELRTALETHRPAILALVHAETSTGARQPLEGVGEL 168
Query: 227 HRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALI 286
R +L+D T G + L D K G G
Sbjct: 169 CREF-----------GTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASP-- 215
Query: 287 VKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME 346
+ + T + + + K E+ T +L+ +
Sbjct: 216 --FTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIA 273
Query: 347 KKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT 406
E + ++ + L ++ + + + DG
Sbjct: 274 ---------QEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCI--PDG- 321
Query: 407 YYGYSEVQNLANLKKIQLRTGCHCNPGSCQRF 438
G + + L N I++ G G R
Sbjct: 322 VDGKAVARRLLNEHNIEVGGGLGELAGKVWRV 353
>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase
{Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}
Length = 388
Score = 54.7 bits (130), Expect = 2e-08
Identities = 26/334 (7%), Positives = 82/334 (24%), Gaps = 31/334 (9%)
Query: 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTDNHTSVLGMRE 166
+D+++ + F T+ + ++ + A + ++ + + + + +
Sbjct: 52 MDEVKDGLRYIFQTE-NRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEM 110
Query: 167 LVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTV 226
+ + ++ + L ++
Sbjct: 111 SERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHG--------------DSSSG 156
Query: 227 HRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALI 286
+ C + +C +++DA + + + D + K+ +
Sbjct: 157 LLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVL---GAPPGIT 213
Query: 287 VKQKSAHVLNKTFYGGGTVKISMANENF--HIKKDGLFEKFEDGTVNYLAIISLKYGFDT 344
S L+ K+ + + K TV I +L+
Sbjct: 214 PISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQ 273
Query: 345 MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD 404
+ ++ + Y + + + +
Sbjct: 274 IAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKD--------PRHRLPTVTGIMI--PK 323
Query: 405 GTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRF 438
G + Q N ++++ G G R
Sbjct: 324 G-VDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRV 356
>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase
{Salmonella typhimurium [TaxId: 90371]}
Length = 361
Score = 54.4 bits (129), Expect = 2e-08
Identities = 22/203 (10%), Positives = 58/203 (28%), Gaps = 13/203 (6%)
Query: 99 LSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTDNH 158
D+ + ++Q+R ++ + SV+ + A++ V + + +++
Sbjct: 27 DDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGA 86
Query: 159 TSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKY 218
+ + + + S+ V+
Sbjct: 87 YGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVH----------- 135
Query: 219 PLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGY 278
S T N + + R ++DA + G +D+ D++ S K
Sbjct: 136 --SETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQG 193
Query: 279 PTGLGALIVKQKSAHVLNKTFYG 301
G +I +++
Sbjct: 194 VPGFAFVIAREQKLAACKGHSRS 216
>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp.
[TaxId: 1143]}
Length = 381
Score = 49.9 bits (117), Expect = 8e-07
Identities = 59/436 (13%), Positives = 124/436 (28%), Gaps = 61/436 (13%)
Query: 59 LKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF 118
L + Y ++ G G+ + + I + + + + + I Q+R + + F
Sbjct: 5 LANKTYFNFGGQGILPTVAL-EAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETF 63
Query: 119 NTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTDNHTSVLGMRELVKTNQIYSFSV 178
N D + + T T+ V ++++G I LTD + +
Sbjct: 64 NVDPNT--ITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYR 121
Query: 179 DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKC 238
++ + N + V + ++ + +
Sbjct: 122 FFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAE------IMAVCRRHQ 175
Query: 239 SRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKT 298
VL+D A GS LD + + D+ + + +K F P G+G L + +N T
Sbjct: 176 GNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPT 235
Query: 299 FYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFEL 358
+ + G E + V A ++ ++ T
Sbjct: 236 YV-----GWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERY 290
Query: 359 SQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN 418
N P V S Q +V+F + G+ +
Sbjct: 291 QAICQRSEFLWRGLNQLPHVHC-----LATSAPQAGLVSFTVDSPL----GHRAIVQKLE 341
Query: 419 LKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA 478
++I LRT IR +
Sbjct: 342 EQRIYLRTIAD--------------------------------------PDCIRACCHYI 363
Query: 479 SNWDDVKYFLSFLNQY 494
++ +++ + L+ L +
Sbjct: 364 TDEEEINHLLARLADF 379
>d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli
[TaxId: 562]}
Length = 92
Score = 45.4 bits (107), Expect = 9e-07
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 9 GWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKN 57
G +G MV F F P+ P+ T+FGYHII V +N
Sbjct: 50 GEFRQGQMVPAFDKVVFSCPVLEPTGPL------HTQFGYHIIKVLYRN 92
>d1j6ya_ d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 120
Score = 42.5 bits (99), Expect = 2e-05
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 5 SGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMV 53
GDLG RG M F++A + L + +++ V T G HII
Sbjct: 76 GGDLGSFGRGQMQKPFEEATYALKVGDISDIV------DTDSGVHIIKR 118
>d1m5ya3 d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase domains
{Escherichia coli [TaxId: 562]}
Length = 108
Score = 36.3 bits (83), Expect = 0.002
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 10 WVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
W F+DA +L ++ PV + FG+H+I +
Sbjct: 65 WATPDIFDPAFRDALTRLNKGQMSAPV------HSSFGWHLIELLDT 105
>d1pina2 d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 119
Score = 36.3 bits (83), Expect = 0.003
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 10 WVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE 54
RG M F+DA+F L ++ PV T G HII+
Sbjct: 80 AFSRGQMQKPFEDASFALRTGEMSGPV------FTDSGIHIILRT 118
>d2pv2a1 d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase domains
{Escherichia coli [TaxId: 562]}
Length = 103
Score = 35.2 bits (80), Expect = 0.005
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 6/47 (12%)
Query: 10 WVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
W + G F A + PI++ G+HI+ V
Sbjct: 62 WGRIQELPGIFAQALSTAKKGDIV------GPIRSGVGFHILKVNDL 102
>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 382
Score = 36.6 bits (83), Expect = 0.010
Identities = 32/333 (9%), Positives = 77/333 (23%), Gaps = 29/333 (8%)
Query: 104 VSEIDQMRTKILQYFNTD--SDHYSVIFTSGAT----SAIKTVSEYFEFNEGSFIYLTDN 157
VS ++ F + S + T N+ + T
Sbjct: 35 VSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGT 94
Query: 158 HTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTK 217
+ Q+ + +++ +N + ++
Sbjct: 95 FSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVD--------- 145
Query: 218 YPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFG 277
+ + + K + F ++DA G + + DF + K G
Sbjct: 146 ---TSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIG 202
Query: 278 YPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIIS 337
P GL + + G + + E +E G Y A
Sbjct: 203 APAGLSISLCSSRFMDYALNDSKNGHVHGYFS----SLRRWTPIMENYEAGKGAYFATPP 258
Query: 338 LKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVN 397
++ ++ + + ++L + Y + +
Sbjct: 259 VQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTA 318
Query: 398 FNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHC 430
+ +V + + G H
Sbjct: 319 VYVADPP-------DVIAFLKSHGVVIAGGIHK 344
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 32.6 bits (72), Expect = 0.16
Identities = 19/205 (9%), Positives = 37/205 (18%), Gaps = 2/205 (0%)
Query: 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTDNHTSVLGMRE 166
+ I + V F SG T + I H S
Sbjct: 37 CAKAARLIGELLERPDAD--VHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGA 94
Query: 167 LVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTV 226
+ T + + ES + H + +
Sbjct: 95 IEATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELED 154
Query: 227 HRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALI 286
+ + ++ L D I K G ++
Sbjct: 155 ISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIIL 214
Query: 287 VKQKSAHVLNKTFYGGGTVKISMAN 311
+ + G +
Sbjct: 215 NDALKPNARHLIKQRGALMAKGWLL 239
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f
complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Length = 212
Score = 29.2 bits (65), Expect = 1.7
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 641 VANWLDEQLNRKGLRLIRISKRSSKRNINSFSNMGQYLLITL 682
V +W +E+L + + SK ++N F +G
Sbjct: 1 VYDWFEERLEIQAIADDITSKYVPP-HVNIFYCIGGITFTCF 41
>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate
aminotransferase {Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 28.4 bits (62), Expect = 3.8
Identities = 24/177 (13%), Positives = 46/177 (25%), Gaps = 18/177 (10%)
Query: 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTDNHTSVLGMRE 166
+ R + + F T+ + +I T T A E L VL
Sbjct: 35 FLKARGLLREAFRTEGE--VLILTGSGTLA----------MEALVKNLFAPGERVLVPVY 82
Query: 167 LVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTV 226
+ + Y +++ + + + + + + +
Sbjct: 83 GKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVAKEGYAGLLLVHSETS------TGAL 136
Query: 227 HRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLG 283
+ FK V D T + L+ D + K P GLG
Sbjct: 137 ADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLG 193
>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT
{Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}
Length = 361
Score = 28.1 bits (61), Expect = 4.4
Identities = 6/40 (15%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 458 DDKDIIDGKP---TGSIRISYGHASNWDDVKYFLSFLNQY 494
+ + + K G +R S +A ++ + + F+ +
Sbjct: 317 EQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHF 356
>d2fxta1 d.17.4.13 (A:234-425) Translocase of inner mitochondrial
membrane TIMM44 (TIM44), C-terminal domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 192
Score = 27.6 bits (61), Expect = 4.8
Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 444 ITIKFHFQQGHICGDDKD--IIDGKPTGSIRISY 475
+ + Q+ ++ K I G + SY
Sbjct: 132 LVVGCRAQEINLYRKKKTGEIAAGDEANILMSSY 165
>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT
{Escherichia coli [TaxId: 562]}
Length = 360
Score = 27.8 bits (60), Expect = 5.3
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 458 DDKDIIDGKP---TGSIRISYGHASNWDDVKYFLSFLNQYF 495
+ K G +R S +A + VK F+ ++
Sbjct: 316 FAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFE 356
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment
{Cow (Bos taurus) [TaxId: 9913]}
Length = 336
Score = 27.9 bits (62), Expect = 5.8
Identities = 13/73 (17%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 482 DDVKYFLSFLNQYFLQQADFVSIGDICLINNQRAESSKGFFLNHSDNINKENKLVSIYIY 541
+++ F++ N +QQ +GD C + + +++K + N S+ +L S ++
Sbjct: 3 AELEEFINGPNNAHIQQ-----VGDRC-YDEKMYDAAKLLYNNVSNF----GRLASTLVH 52
Query: 542 PVKACGFFKVESK 554
+ K
Sbjct: 53 LGEYQAAVDGARK 65
>d2fiaa1 d.108.1.1 (A:1-157) Probable acetyltransferase EF1919
{Enterococcus faecalis [TaxId: 1351]}
Length = 157
Score = 27.0 bits (58), Expect = 6.6
Identities = 11/117 (9%), Positives = 33/117 (28%), Gaps = 12/117 (10%)
Query: 171 NQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGT---------KYPLS 221
++ ++ + SQ +++ L++ E +
Sbjct: 19 TEVKAYMDVVGITQWTKDYPSQGDIQEDITKKRLYLLVHEEMIFSMATFCMEQEQDFVWL 78
Query: 222 WCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGY 278
N++ K + A + G + + + + I F++ G+
Sbjct: 79 KRFATSPNYIAKGYGSLLFHEL---EKRAVWEGRRKMYAQTNHTNHRMIRFFESKGF 132
>d1k7ha_ c.76.1.1 (A:) Alkaline phosphatase {Northern shrimp
(Pandalus borealis) [TaxId: 6703]}
Length = 476
Score = 27.1 bits (59), Expect = 9.3
Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 13/116 (11%)
Query: 636 DCGNAVANWLDEQL----------NRKGLRLIRISKRSSKRNINSFSNMGQYLLITLPSI 685
D + + +WLD++ NR L + I+ + S++++ +L +
Sbjct: 225 DGKHLITDWLDDKASQGATASYVWNRDDLLAVDIANTDYLMGLFSYTHL-DTVLTRDAEM 283
Query: 686 QAQLENL--NAIFELENFVNRFRSNFVVSGQFEANAENDWDQVLIETNDGLLSFQV 739
L + AI L N F + N Q L ET D + +
Sbjct: 284 DPTLPEMTKVAIEMLTKDENGFFLLVEGGRIDHMHHANQIRQSLAETLDMEEAVSM 339
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0486 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,043,716
Number of extensions: 145884
Number of successful extensions: 429
Number of sequences better than 10.0: 1
Number of HSP's gapped: 419
Number of HSP's successfully gapped: 32
Length of query: 815
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 722
Effective length of database: 1,130,706
Effective search space: 816369732
Effective search space used: 816369732
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.3 bits)