Query psy16513
Match_columns 156
No_of_seqs 116 out of 475
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 23:14:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01576 Myosin_tail_1: Myosin 99.8 4.6E-22 1E-26 179.8 0.0 105 1-105 44-148 (859)
2 KOG0161|consensus 99.7 4.8E-16 1E-20 147.5 20.7 105 1-105 1102-1206(1930)
3 PF01576 Myosin_tail_1: Myosin 98.8 8.2E-10 1.8E-14 100.7 0.0 142 3-145 131-304 (859)
4 KOG0161|consensus 98.5 1.1E-05 2.4E-10 78.3 19.3 140 2-141 1385-1541(1930)
5 PF12718 Tropomyosin_1: Tropom 97.3 0.038 8.3E-07 40.3 16.0 121 30-151 6-133 (143)
6 PF00038 Filament: Intermediat 97.2 0.094 2E-06 42.5 19.7 64 3-73 54-117 (312)
7 TIGR02169 SMC_prok_A chromosom 97.0 0.25 5.4E-06 46.4 20.9 20 21-40 326-345 (1164)
8 PF00261 Tropomyosin: Tropomyo 96.9 0.13 2.8E-06 40.4 18.6 44 107-150 178-221 (237)
9 TIGR02169 SMC_prok_A chromosom 96.6 0.64 1.4E-05 43.7 21.2 22 121-142 471-492 (1164)
10 PF09728 Taxilin: Myosin-like 96.4 0.41 8.8E-06 39.3 19.7 26 126-151 244-269 (309)
11 PRK02224 chromosome segregatio 96.2 0.98 2.1E-05 41.7 19.3 49 22-70 284-332 (880)
12 PF00038 Filament: Intermediat 96.2 0.51 1.1E-05 38.2 18.9 62 8-69 80-141 (312)
13 PRK11637 AmiB activator; Provi 96.1 0.77 1.7E-05 39.1 21.2 74 4-77 48-121 (428)
14 PRK04863 mukB cell division pr 96.1 1.7 3.6E-05 42.9 20.5 69 82-150 405-480 (1486)
15 PRK09039 hypothetical protein; 96.0 0.73 1.6E-05 38.3 18.4 11 139-149 189-199 (343)
16 PF08317 Spc7: Spc7 kinetochor 95.7 0.97 2.1E-05 37.2 19.2 132 18-149 150-285 (325)
17 COG1196 Smc Chromosome segrega 95.4 2.7 6E-05 40.3 21.0 31 111-141 869-899 (1163)
18 KOG0977|consensus 95.2 1.4 3E-05 38.9 14.9 82 4-85 149-230 (546)
19 PF13851 GAS: Growth-arrest sp 95.1 1.1 2.4E-05 34.5 14.6 105 45-150 20-131 (201)
20 PRK02224 chromosome segregatio 94.9 3.1 6.7E-05 38.4 19.8 10 89-98 628-637 (880)
21 PRK04778 septation ring format 94.9 2.6 5.6E-05 37.4 16.1 39 3-41 289-327 (569)
22 TIGR00606 rad50 rad50. This fa 94.9 4.2 9E-05 39.6 19.3 40 57-97 827-866 (1311)
23 KOG0612|consensus 94.8 4 8.6E-05 39.2 17.3 85 3-88 494-578 (1317)
24 PHA02562 46 endonuclease subun 94.7 2.6 5.7E-05 36.7 18.5 30 7-36 217-246 (562)
25 KOG0995|consensus 94.5 3.3 7.1E-05 36.7 16.8 130 17-147 221-360 (581)
26 PF15070 GOLGA2L5: Putative go 94.4 3.7 8.1E-05 36.9 19.3 42 3-44 29-70 (617)
27 PF07888 CALCOCO1: Calcium bin 94.2 3.7 8.1E-05 36.3 20.1 43 2-44 142-184 (546)
28 KOG0971|consensus 94.0 5.4 0.00012 37.4 17.8 62 25-86 298-359 (1243)
29 PF09726 Macoilin: Transmembra 94.0 4.8 0.0001 36.7 20.5 144 4-150 489-653 (697)
30 PRK11637 AmiB activator; Provi 94.0 3.5 7.6E-05 35.1 21.1 73 3-75 54-126 (428)
31 PF07888 CALCOCO1: Calcium bin 93.9 4.4 9.5E-05 35.9 18.8 14 129-142 335-348 (546)
32 PF06428 Sec2p: GDP/GTP exchan 93.8 0.37 8E-06 33.1 6.6 33 11-43 2-34 (100)
33 KOG0996|consensus 93.6 7 0.00015 37.5 18.7 24 11-34 406-429 (1293)
34 KOG4674|consensus 93.6 8.8 0.00019 38.5 20.6 140 11-153 746-892 (1822)
35 PF13851 GAS: Growth-arrest sp 93.6 2.6 5.6E-05 32.4 19.4 127 3-147 27-171 (201)
36 KOG0977|consensus 93.2 5.8 0.00013 35.1 16.4 47 26-72 87-133 (546)
37 COG1579 Zn-ribbon protein, pos 93.1 3.6 7.8E-05 32.6 17.7 36 114-149 112-147 (239)
38 PF09726 Macoilin: Transmembra 92.9 7.3 0.00016 35.6 17.4 125 6-138 505-655 (697)
39 KOG0996|consensus 92.7 9.8 0.00021 36.6 18.8 68 5-72 801-878 (1293)
40 COG3883 Uncharacterized protei 92.6 4.7 0.0001 32.5 19.5 76 12-87 33-108 (265)
41 COG1196 Smc Chromosome segrega 92.5 11 0.00023 36.4 20.7 21 9-29 673-693 (1163)
42 smart00787 Spc7 Spc7 kinetocho 92.3 5.6 0.00012 32.7 18.7 70 20-89 147-216 (312)
43 PF12128 DUF3584: Protein of u 91.4 15 0.00032 35.7 20.8 95 4-105 608-702 (1201)
44 PF15070 GOLGA2L5: Putative go 90.4 13 0.00028 33.5 19.3 48 27-74 90-137 (617)
45 PF08614 ATG16: Autophagy prot 90.1 6.7 0.00015 29.7 10.4 19 113-131 159-177 (194)
46 PF10174 Cast: RIM-binding pro 89.8 17 0.00036 33.7 19.9 71 6-76 318-388 (775)
47 PF12325 TMF_TATA_bd: TATA ele 89.7 5.6 0.00012 28.2 12.8 42 2-43 22-63 (120)
48 KOG0976|consensus 89.1 20 0.00043 33.6 17.6 41 2-42 112-152 (1265)
49 PF09730 BicD: Microtubule-ass 88.4 20 0.00044 32.9 15.0 15 3-17 34-48 (717)
50 PF08317 Spc7: Spc7 kinetochor 88.4 13 0.00028 30.6 16.7 35 9-43 169-203 (325)
51 KOG0250|consensus 87.6 27 0.00059 33.4 20.9 45 106-150 380-425 (1074)
52 PRK04778 septation ring format 87.4 20 0.00044 31.8 20.0 52 25-76 283-334 (569)
53 COG4026 Uncharacterized protei 87.0 7.2 0.00016 30.8 8.7 69 28-97 132-200 (290)
54 PF05701 WEMBL: Weak chloropla 86.4 22 0.00049 31.2 20.2 38 3-40 179-216 (522)
55 PF12128 DUF3584: Protein of u 85.9 36 0.00077 33.1 21.2 12 130-141 775-786 (1201)
56 COG1579 Zn-ribbon protein, pos 85.5 17 0.00036 28.9 16.5 51 21-71 28-78 (239)
57 PF14662 CCDC155: Coiled-coil 85.3 15 0.00032 28.2 18.2 60 6-69 18-77 (193)
58 PF07111 HCR: Alpha helical co 84.8 31 0.00068 31.5 18.5 107 40-153 117-230 (739)
59 KOG0964|consensus 84.4 39 0.00084 32.3 17.9 51 9-59 285-335 (1200)
60 KOG0980|consensus 84.2 37 0.00081 31.9 20.0 58 89-146 467-528 (980)
61 KOG0250|consensus 84.0 41 0.00089 32.2 18.6 64 3-66 661-724 (1074)
62 KOG4674|consensus 83.7 54 0.0012 33.3 20.3 144 6-150 104-269 (1822)
63 PF05701 WEMBL: Weak chloropla 83.6 30 0.00066 30.4 20.2 41 4-44 35-82 (522)
64 KOG4643|consensus 83.6 43 0.00092 32.1 18.8 37 5-41 417-453 (1195)
65 COG4942 Membrane-bound metallo 82.9 30 0.00064 29.8 20.7 62 3-64 45-106 (420)
66 KOG0980|consensus 82.6 43 0.00094 31.5 19.1 48 106-153 446-493 (980)
67 PF12325 TMF_TATA_bd: TATA ele 82.6 15 0.00032 26.0 13.9 88 55-150 26-113 (120)
68 PF05557 MAD: Mitotic checkpoi 82.4 2.2 4.9E-05 38.8 4.7 43 3-45 385-427 (722)
69 COG4026 Uncharacterized protei 82.4 22 0.00048 28.1 9.5 22 87-108 162-183 (290)
70 PF05667 DUF812: Protein of un 81.9 39 0.00084 30.4 19.7 48 57-104 406-453 (594)
71 PF10498 IFT57: Intra-flagella 80.9 32 0.0007 28.9 16.8 33 10-42 220-252 (359)
72 KOG1029|consensus 80.8 50 0.0011 30.9 17.0 18 26-43 439-456 (1118)
73 KOG0964|consensus 79.7 59 0.0013 31.2 19.9 71 6-76 695-765 (1200)
74 KOG1850|consensus 78.9 37 0.00079 28.3 19.5 46 106-151 230-275 (391)
75 PF10174 Cast: RIM-binding pro 78.6 57 0.0012 30.4 20.9 41 9-49 276-319 (775)
76 smart00787 Spc7 Spc7 kinetocho 78.0 37 0.00081 27.9 15.0 16 5-20 72-87 (312)
77 KOG4196|consensus 77.3 11 0.00024 27.1 5.9 39 113-151 75-113 (135)
78 PHA02562 46 endonuclease subun 76.2 52 0.0011 28.6 20.8 54 17-70 220-273 (562)
79 PF05557 MAD: Mitotic checkpoi 75.0 0.94 2E-05 41.2 0.0 38 114-152 290-330 (722)
80 PRK10869 recombination and rep 74.6 62 0.0013 28.7 17.2 93 57-149 259-371 (553)
81 PF00261 Tropomyosin: Tropomyo 74.3 39 0.00085 26.4 19.0 34 106-139 191-224 (237)
82 PRK10869 recombination and rep 74.1 64 0.0014 28.6 13.7 73 68-141 298-370 (553)
83 KOG0976|consensus 73.5 83 0.0018 29.7 18.2 43 3-45 263-305 (1265)
84 PF08826 DMPK_coil: DMPK coile 73.0 20 0.00043 22.3 9.8 59 7-72 1-59 (61)
85 COG1842 PspA Phage shock prote 71.8 46 0.001 26.1 16.4 59 21-79 21-79 (225)
86 KOG2991|consensus 71.5 53 0.0011 26.6 12.6 82 55-136 139-234 (330)
87 PF04849 HAP1_N: HAP1 N-termin 70.8 59 0.0013 26.8 14.8 19 129-147 286-304 (306)
88 PF04012 PspA_IM30: PspA/IM30 70.1 47 0.001 25.4 16.4 47 28-74 27-73 (221)
89 KOG0971|consensus 70.0 1E+02 0.0023 29.4 19.2 48 7-54 407-454 (1243)
90 PF04156 IncA: IncA protein; 68.9 45 0.00098 24.8 13.7 66 11-76 82-147 (191)
91 TIGR00634 recN DNA repair prot 68.7 84 0.0018 27.8 13.7 93 57-149 264-376 (563)
92 PF15066 CAGE1: Cancer-associa 68.6 81 0.0018 27.6 18.6 146 4-150 363-520 (527)
93 KOG0963|consensus 68.1 94 0.002 28.1 17.7 121 22-142 119-272 (629)
94 PF05622 HOOK: HOOK protein; 67.7 1.7 3.8E-05 39.5 0.0 11 106-116 364-374 (713)
95 KOG0933|consensus 65.9 1.3E+02 0.0029 29.0 16.8 46 31-76 787-832 (1174)
96 PF04799 Fzo_mitofusin: fzo-li 65.6 39 0.00084 25.5 6.8 39 16-54 112-150 (171)
97 PF14662 CCDC155: Coiled-coil 65.5 60 0.0013 24.9 20.3 43 29-71 65-107 (193)
98 PF04012 PspA_IM30: PspA/IM30 64.0 63 0.0014 24.7 15.7 50 22-71 28-77 (221)
99 TIGR00634 recN DNA repair prot 63.5 1.1E+02 0.0023 27.1 18.0 51 79-129 313-363 (563)
100 KOG3032|consensus 63.1 55 0.0012 26.0 7.4 88 57-149 165-261 (264)
101 KOG4074|consensus 62.7 88 0.0019 26.0 8.8 19 132-150 204-222 (383)
102 PF04156 IncA: IncA protein; 62.3 62 0.0013 24.0 15.1 32 109-140 155-186 (191)
103 PF15233 SYCE1: Synaptonemal c 60.7 61 0.0013 23.4 12.5 69 3-71 6-74 (134)
104 PF05622 HOOK: HOOK protein; 60.6 2.8 6.1E-05 38.1 0.0 7 89-95 299-305 (713)
105 PLN03188 kinesin-12 family pro 59.7 1.2E+02 0.0027 29.8 10.4 45 7-54 1159-1203(1320)
106 PF07926 TPR_MLP1_2: TPR/MLP1/ 59.1 61 0.0013 22.9 16.1 35 3-37 3-37 (132)
107 PF06810 Phage_GP20: Phage min 58.6 45 0.00098 24.5 6.1 15 86-100 32-46 (155)
108 PF12718 Tropomyosin_1: Tropom 58.4 68 0.0015 23.2 18.8 37 106-142 102-138 (143)
109 PF06008 Laminin_I: Laminin Do 58.3 91 0.002 24.6 15.1 20 120-139 147-166 (264)
110 PF11932 DUF3450: Protein of u 57.9 90 0.002 24.5 12.3 50 20-76 45-94 (251)
111 KOG4643|consensus 57.5 1.9E+02 0.0041 28.0 19.4 60 17-76 401-460 (1195)
112 PF10146 zf-C4H2: Zinc finger- 57.2 94 0.002 24.5 9.6 11 89-99 89-99 (230)
113 PF09432 THP2: Tho complex sub 56.7 62 0.0013 23.3 6.2 29 122-150 73-102 (132)
114 COG0497 RecN ATPase involved i 56.2 1.5E+02 0.0033 26.6 17.2 139 10-149 208-372 (557)
115 COG4942 Membrane-bound metallo 56.2 1.3E+02 0.0029 25.9 20.6 17 129-145 234-250 (420)
116 PF08614 ATG16: Autophagy prot 56.1 86 0.0019 23.6 10.2 37 111-147 143-183 (194)
117 PF05377 FlaC_arch: Flagella a 55.9 45 0.00097 20.3 6.3 44 107-150 2-45 (55)
118 PF04849 HAP1_N: HAP1 N-termin 55.3 1.2E+02 0.0026 25.1 16.9 40 111-150 240-286 (306)
119 PRK10698 phage shock protein P 55.2 98 0.0021 24.1 15.6 17 55-71 55-71 (222)
120 COG5185 HEC1 Protein involved 54.4 1.6E+02 0.0034 26.1 16.5 74 14-88 254-327 (622)
121 PF05377 FlaC_arch: Flagella a 54.0 49 0.0011 20.2 5.3 36 5-40 2-37 (55)
122 PF14643 DUF4455: Domain of un 53.9 1.5E+02 0.0032 25.7 20.8 147 5-152 251-430 (473)
123 smart00338 BRLZ basic region l 53.7 49 0.0011 20.2 6.0 34 116-149 30-63 (65)
124 PF05278 PEARLI-4: Arabidopsis 53.3 1.2E+02 0.0026 24.5 15.1 67 79-145 195-261 (269)
125 PRK11281 hypothetical protein; 51.4 2.4E+02 0.0053 27.5 13.0 35 112-146 142-176 (1113)
126 PF12777 MT: Microtubule-bindi 51.4 1.2E+02 0.0026 25.1 8.2 20 57-76 240-259 (344)
127 PF10481 CENP-F_N: Cenp-F N-te 51.1 1.4E+02 0.0029 24.5 13.6 31 3-40 18-48 (307)
128 PRK11546 zraP zinc resistance 50.6 97 0.0021 22.6 9.7 68 10-77 47-114 (143)
129 PF11932 DUF3450: Protein of u 50.6 1.2E+02 0.0026 23.7 13.1 27 79-105 75-101 (251)
130 PF07926 TPR_MLP1_2: TPR/MLP1/ 50.5 88 0.0019 22.1 18.0 22 120-141 99-120 (132)
131 TIGR01843 type_I_hlyD type I s 50.3 1.4E+02 0.0031 24.5 18.1 24 126-149 246-269 (423)
132 KOG0999|consensus 50.2 2E+02 0.0043 26.1 15.6 36 106-141 101-136 (772)
133 cd07624 BAR_SNX7_30 The Bin/Am 50.1 1.1E+02 0.0024 23.2 19.4 44 4-47 22-65 (200)
134 PF05911 DUF869: Plant protein 50.1 2.2E+02 0.0048 26.6 18.3 38 114-151 260-297 (769)
135 KOG0999|consensus 49.9 2E+02 0.0043 26.0 16.3 74 4-84 108-191 (772)
136 PF08172 CASP_C: CASP C termin 49.6 1.3E+02 0.0029 23.9 8.3 40 79-128 84-123 (248)
137 PF06637 PV-1: PV-1 protein (P 49.5 1.7E+02 0.0037 25.1 11.9 88 60-147 264-377 (442)
138 PF09304 Cortex-I_coil: Cortex 49.3 87 0.0019 21.7 12.2 17 25-41 10-26 (107)
139 COG1340 Uncharacterized archae 49.0 1.5E+02 0.0032 24.3 18.6 38 106-143 208-245 (294)
140 KOG0018|consensus 48.7 2.7E+02 0.0058 27.2 17.6 35 3-37 227-261 (1141)
141 PF05700 BCAS2: Breast carcino 48.7 1.2E+02 0.0027 23.4 8.4 24 22-45 141-164 (221)
142 PRK10884 SH3 domain-containing 48.7 1.2E+02 0.0027 23.3 12.2 22 55-76 96-117 (206)
143 PF04582 Reo_sigmaC: Reovirus 48.0 57 0.0012 27.1 5.6 88 57-145 61-152 (326)
144 PF02183 HALZ: Homeobox associ 47.2 56 0.0012 18.9 5.6 37 57-94 3-39 (45)
145 PF07889 DUF1664: Protein of u 46.8 1E+02 0.0023 21.9 11.8 19 22-40 59-77 (126)
146 COG2433 Uncharacterized conser 46.8 2.3E+02 0.0049 25.8 10.6 7 63-69 485-491 (652)
147 KOG1103|consensus 46.6 1.8E+02 0.004 24.7 14.2 19 131-149 243-261 (561)
148 PF06548 Kinesin-related: Kine 46.6 2E+02 0.0044 25.1 10.6 45 7-54 389-433 (488)
149 PF10473 CENP-F_leu_zip: Leuci 46.3 1.1E+02 0.0024 22.2 16.9 6 31-36 31-36 (140)
150 PF06156 DUF972: Protein of un 46.2 97 0.0021 21.4 7.9 52 86-140 6-57 (107)
151 TIGR02680 conserved hypothetic 46.1 3.2E+02 0.0068 27.3 22.0 43 3-45 742-784 (1353)
152 PF05483 SCP-1: Synaptonemal c 45.9 2.5E+02 0.0054 26.0 18.6 64 2-72 355-418 (786)
153 PF09730 BicD: Microtubule-ass 45.9 2.5E+02 0.0054 26.0 17.5 47 20-66 275-321 (717)
154 PF06428 Sec2p: GDP/GTP exchan 45.8 95 0.0021 21.2 6.6 6 89-94 23-28 (100)
155 PF14915 CCDC144C: CCDC144C pr 45.6 1.7E+02 0.0037 24.1 18.4 27 115-141 217-243 (305)
156 PF04102 SlyX: SlyX; InterPro 45.4 76 0.0016 19.9 5.1 27 12-38 20-46 (69)
157 PF10211 Ax_dynein_light: Axon 45.1 1.3E+02 0.0029 22.7 12.6 42 57-98 139-180 (189)
158 PF03148 Tektin: Tektin family 45.0 1.9E+02 0.0041 24.4 19.4 27 3-29 137-163 (384)
159 PF04111 APG6: Autophagy prote 45.0 1.7E+02 0.0038 24.0 12.1 17 89-105 121-137 (314)
160 PF08581 Tup_N: Tup N-terminal 44.1 89 0.0019 20.4 8.3 35 60-98 40-74 (79)
161 KOG0994|consensus 43.6 3.5E+02 0.0075 27.0 16.6 33 10-42 1598-1630(1758)
162 PF15372 DUF4600: Domain of un 43.0 1.2E+02 0.0027 21.7 11.4 57 49-105 12-68 (129)
163 PF09728 Taxilin: Myosin-like 42.8 1.9E+02 0.0041 23.7 18.9 35 111-145 243-277 (309)
164 PF05010 TACC: Transforming ac 42.8 1.6E+02 0.0034 22.8 18.5 19 21-39 87-105 (207)
165 KOG2391|consensus 42.2 2.1E+02 0.0045 24.1 8.3 60 18-77 219-278 (365)
166 PLN02935 Bifunctional NADH kin 41.9 51 0.0011 29.1 4.7 16 137-152 59-74 (508)
167 TIGR02977 phageshock_pspA phag 41.6 1.6E+02 0.0035 22.6 15.2 10 57-66 57-66 (219)
168 PF07200 Mod_r: Modifier of ru 41.2 1.3E+02 0.0028 21.4 11.4 46 53-100 70-115 (150)
169 PF06810 Phage_GP20: Phage min 41.0 1.4E+02 0.0031 21.8 8.7 68 10-81 13-80 (155)
170 KOG4302|consensus 40.9 2.9E+02 0.0063 25.4 15.3 65 12-76 56-120 (660)
171 PF06160 EzrA: Septation ring 40.6 2.6E+02 0.0057 24.8 17.8 68 21-88 105-172 (560)
172 PRK03947 prefoldin subunit alp 40.5 1.3E+02 0.0028 21.2 13.2 40 106-145 95-134 (140)
173 PRK02119 hypothetical protein; 40.5 97 0.0021 19.8 6.3 29 12-40 25-53 (73)
174 PF08581 Tup_N: Tup N-terminal 40.3 1E+02 0.0023 20.1 9.7 39 113-151 26-64 (79)
175 PF14389 Lzipper-MIP1: Leucine 40.2 48 0.001 22.0 3.5 26 2-27 14-39 (88)
176 PF14077 WD40_alt: Alternative 40.2 52 0.0011 19.3 3.1 16 3-18 18-33 (48)
177 smart00502 BBC B-Box C-termina 40.1 1.1E+02 0.0024 20.4 14.0 19 10-28 7-25 (127)
178 cd07666 BAR_SNX7 The Bin/Amphi 39.6 1.9E+02 0.0042 22.9 18.2 94 5-98 56-149 (243)
179 PRK13169 DNA replication intia 39.5 1.3E+02 0.0028 20.9 7.8 50 86-138 6-55 (110)
180 KOG3156|consensus 39.5 1.9E+02 0.004 22.7 14.8 26 122-147 177-202 (220)
181 PRK00736 hypothetical protein; 38.5 1E+02 0.0022 19.4 6.3 33 9-41 18-50 (68)
182 PF00170 bZIP_1: bZIP transcri 38.5 92 0.002 18.9 6.3 9 28-36 30-38 (64)
183 PRK13729 conjugal transfer pil 38.3 1.1E+02 0.0024 26.8 6.2 42 28-69 80-121 (475)
184 KOG0933|consensus 38.1 3.9E+02 0.0084 26.0 19.1 19 58-76 786-804 (1174)
185 PRK04325 hypothetical protein; 38.1 1.1E+02 0.0023 19.6 6.2 12 57-68 42-53 (74)
186 cd04790 HTH_Cfa-like_unk Helix 37.8 1.7E+02 0.0036 21.7 6.8 27 129-155 122-148 (172)
187 KOG2010|consensus 37.8 2.4E+02 0.0053 23.7 7.7 59 4-76 120-178 (405)
188 PF09032 Siah-Interact_N: Siah 37.6 1.2E+02 0.0025 19.9 4.9 42 2-43 2-45 (79)
189 PRK00295 hypothetical protein; 37.5 1.1E+02 0.0023 19.3 6.2 30 11-40 20-49 (68)
190 PF15294 Leu_zip: Leucine zipp 37.5 2.3E+02 0.0049 23.1 13.6 45 22-66 130-174 (278)
191 PRK10698 phage shock protein P 37.4 2E+02 0.0042 22.4 19.4 92 4-96 32-135 (222)
192 PRK04406 hypothetical protein; 37.4 1.1E+02 0.0024 19.6 6.3 21 48-68 35-55 (75)
193 KOG0946|consensus 37.2 3.7E+02 0.008 25.5 15.0 14 28-41 703-716 (970)
194 PF07352 Phage_Mu_Gam: Bacteri 37.1 1.6E+02 0.0034 21.2 6.4 40 61-100 12-51 (149)
195 smart00502 BBC B-Box C-termina 36.7 1.3E+02 0.0028 20.0 14.2 19 65-83 34-52 (127)
196 KOG2264|consensus 36.5 3.4E+02 0.0073 24.8 9.6 65 63-138 83-147 (907)
197 PF09738 DUF2051: Double stran 35.9 2.5E+02 0.0053 23.1 17.7 128 5-147 86-247 (302)
198 COG1842 PspA Phage shock prote 35.9 2.1E+02 0.0046 22.4 14.5 44 2-45 30-73 (225)
199 PF06008 Laminin_I: Laminin Do 35.6 2.2E+02 0.0048 22.4 17.8 32 113-144 221-252 (264)
200 PF06705 SF-assemblin: SF-asse 35.6 2.1E+02 0.0046 22.3 18.2 133 1-144 97-240 (247)
201 PF14735 HAUS4: HAUS augmin-li 34.8 2.3E+02 0.005 22.4 9.3 61 9-73 170-230 (238)
202 PF01920 Prefoldin_2: Prefoldi 34.7 1.3E+02 0.0029 19.6 10.4 38 113-150 63-100 (106)
203 PF08912 Rho_Binding: Rho Bind 34.5 1.2E+02 0.0027 19.3 5.1 21 121-141 5-25 (69)
204 PF06156 DUF972: Protein of un 34.0 1.6E+02 0.0034 20.3 6.1 16 57-72 41-56 (107)
205 PF05667 DUF812: Protein of un 33.7 3.6E+02 0.0079 24.4 18.6 9 142-150 470-478 (594)
206 PF05700 BCAS2: Breast carcino 33.4 2.3E+02 0.0049 21.9 14.9 32 74-105 136-167 (221)
207 KOG2077|consensus 33.0 2.7E+02 0.0059 25.4 7.7 46 27-72 332-377 (832)
208 PF04568 IATP: Mitochondrial A 32.9 1.6E+02 0.0035 20.1 5.1 30 11-40 70-99 (100)
209 PRK14127 cell division protein 32.0 1.8E+02 0.0038 20.2 6.3 8 89-96 27-34 (109)
210 PF04728 LPP: Lipoprotein leuc 31.7 1.3E+02 0.0027 18.4 7.0 30 109-138 7-36 (56)
211 PF14197 Cep57_CLD_2: Centroso 31.5 1.4E+02 0.003 18.9 9.6 35 3-37 5-39 (69)
212 PF04799 Fzo_mitofusin: fzo-li 30.4 2.4E+02 0.0052 21.3 9.0 27 107-133 139-165 (171)
213 KOG4673|consensus 30.3 4.6E+02 0.01 24.5 16.8 74 4-77 354-427 (961)
214 KOG0804|consensus 30.2 3.8E+02 0.0082 23.5 15.4 21 47-67 377-397 (493)
215 PF09325 Vps5: Vps5 C terminal 30.1 2.4E+02 0.0053 21.3 19.9 44 3-46 31-74 (236)
216 PRK00846 hypothetical protein; 29.8 1.6E+02 0.0035 19.1 6.2 31 41-71 30-60 (77)
217 PRK13729 conjugal transfer pil 29.7 3.1E+02 0.0068 24.1 7.5 25 112-136 97-121 (475)
218 COG4467 Regulator of replicati 29.4 2E+02 0.0043 20.1 6.7 51 84-137 4-54 (114)
219 cd07667 BAR_SNX30 The Bin/Amph 29.3 2.9E+02 0.0063 21.9 19.0 73 5-77 53-125 (240)
220 PF05911 DUF869: Plant protein 29.1 4.9E+02 0.011 24.4 18.9 38 111-150 119-156 (769)
221 PRK02793 phi X174 lysis protei 29.0 1.6E+02 0.0034 18.7 6.3 12 57-68 41-52 (72)
222 PRK10132 hypothetical protein; 28.8 2E+02 0.0043 19.9 6.5 49 22-70 10-63 (108)
223 KOG0994|consensus 28.5 6.2E+02 0.013 25.4 19.0 31 40-70 1600-1630(1758)
224 PF13514 AAA_27: AAA domain 28.2 5.6E+02 0.012 24.8 18.5 42 109-150 670-711 (1111)
225 TIGR03007 pepcterm_ChnLen poly 28.1 3.9E+02 0.0084 22.9 15.7 25 126-150 355-379 (498)
226 PF05384 DegS: Sensor protein 27.3 2.6E+02 0.0057 20.7 18.7 66 12-77 8-73 (159)
227 KOG0804|consensus 27.2 4.3E+02 0.0093 23.2 11.7 54 32-86 355-408 (493)
228 PF07334 IFP_35_N: Interferon- 27.0 1.8E+02 0.0038 19.0 4.3 28 122-149 3-30 (76)
229 PF15619 Lebercilin: Ciliary p 26.6 2.9E+02 0.0063 21.0 21.0 18 28-45 16-33 (194)
230 PF07989 Microtub_assoc: Micro 26.2 1.8E+02 0.004 18.6 7.5 28 117-144 41-68 (75)
231 TIGR03185 DNA_S_dndD DNA sulfu 26.2 4.9E+02 0.011 23.5 20.6 12 5-16 302-313 (650)
232 COG5415 Predicted integral mem 26.1 1.6E+02 0.0034 23.2 4.6 34 117-150 13-46 (251)
233 TIGR03545 conserved hypothetic 26.1 4.8E+02 0.01 23.4 8.8 81 3-86 191-271 (555)
234 PF07889 DUF1664: Protein of u 25.9 2.5E+02 0.0054 20.0 9.7 18 26-43 38-55 (126)
235 COG0419 SbcC ATPase involved i 25.8 5.7E+02 0.012 24.1 20.4 37 109-145 400-436 (908)
236 PF05791 Bacillus_HBL: Bacillu 25.4 2.9E+02 0.0063 20.6 9.0 18 60-77 132-149 (184)
237 KOG0995|consensus 25.3 5.1E+02 0.011 23.4 21.3 34 117-150 444-477 (581)
238 PF04899 MbeD_MobD: MbeD/MobD 25.3 1.9E+02 0.0041 18.4 8.3 40 58-98 27-66 (70)
239 PF07111 HCR: Alpha helical co 25.2 5.6E+02 0.012 23.8 18.2 43 3-45 169-211 (739)
240 PF14915 CCDC144C: CCDC144C pr 24.3 4.1E+02 0.0089 21.9 19.3 12 29-40 89-100 (305)
241 KOG4673|consensus 24.3 6E+02 0.013 23.8 17.8 20 123-142 609-628 (961)
242 COG3352 FlaC Putative archaeal 24.2 3E+02 0.0066 20.4 7.3 46 57-102 84-129 (157)
243 TIGR02449 conserved hypothetic 24.0 2E+02 0.0042 18.1 6.6 36 113-148 8-43 (65)
244 KOG3863|consensus 23.9 2.4E+02 0.0053 25.5 6.0 41 3-43 511-551 (604)
245 PF10498 IFT57: Intra-flagella 23.9 4.4E+02 0.0095 22.2 14.0 9 135-143 337-345 (359)
246 PF04582 Reo_sigmaC: Reovirus 23.8 1.9E+02 0.0041 24.1 4.9 11 61-71 86-96 (326)
247 PF14932 HAUS-augmin3: HAUS au 23.7 3.7E+02 0.008 21.2 11.3 42 4-45 69-110 (256)
248 TIGR02894 DNA_bind_RsfA transc 23.6 3.2E+02 0.0069 20.4 8.6 11 53-63 55-65 (161)
249 PHA01750 hypothetical protein 23.4 2.1E+02 0.0045 18.2 4.0 14 30-43 41-54 (75)
250 PF13863 DUF4200: Domain of un 23.2 2.5E+02 0.0055 19.1 14.8 33 113-145 75-107 (126)
251 TIGR01005 eps_transp_fam exopo 23.1 5.8E+02 0.013 23.3 18.2 26 125-150 375-400 (754)
252 PRK10404 hypothetical protein; 23.1 2.5E+02 0.0054 19.1 6.7 24 25-48 6-29 (101)
253 PF03148 Tektin: Tektin family 22.9 4.6E+02 0.01 22.1 19.7 44 106-149 339-382 (384)
254 PF10212 TTKRSYEDQ: Predicted 22.8 5.5E+02 0.012 22.9 12.7 93 2-94 419-511 (518)
255 PF04201 TPD52: Tumour protein 22.7 3.3E+02 0.0072 20.3 5.9 33 116-148 33-65 (162)
256 PF04949 Transcrip_act: Transc 22.7 3.2E+02 0.007 20.2 13.8 88 6-104 37-128 (159)
257 COG1730 GIM5 Predicted prefold 22.6 3.1E+02 0.0068 20.0 12.8 40 106-145 95-134 (145)
258 PF08232 Striatin: Striatin fa 22.3 3E+02 0.0064 19.6 6.3 40 112-151 32-71 (134)
259 PF05812 Herpes_BLRF2: Herpesv 22.2 1.6E+02 0.0035 20.8 3.7 27 113-139 4-30 (118)
260 KOG0963|consensus 21.6 6.3E+02 0.014 23.1 18.2 23 128-150 319-341 (629)
261 PRK10361 DNA recombination pro 21.6 5.6E+02 0.012 22.5 19.0 134 2-135 59-195 (475)
262 PRK14074 rpsF 30S ribosomal pr 21.3 1.2E+02 0.0026 24.2 3.2 29 6-37 85-113 (257)
263 TIGR02680 conserved hypothetic 21.2 8.4E+02 0.018 24.4 20.3 22 4-25 221-242 (1353)
264 PF10481 CENP-F_N: Cenp-F N-te 21.1 4.7E+02 0.01 21.4 13.9 10 57-66 23-32 (307)
265 KOG4348|consensus 20.7 5.6E+02 0.012 22.6 7.2 37 32-71 570-606 (627)
266 PF11559 ADIP: Afadin- and alp 20.6 3.2E+02 0.007 19.4 12.2 24 17-40 52-75 (151)
267 TIGR03017 EpsF chain length de 20.6 5.1E+02 0.011 21.7 18.1 24 127-150 343-366 (444)
268 cd07627 BAR_Vps5p The Bin/Amph 20.5 3.9E+02 0.0085 20.3 21.6 43 3-45 11-53 (216)
269 PRK08476 F0F1 ATP synthase sub 20.5 3.3E+02 0.0071 19.4 13.0 32 7-38 42-73 (141)
270 KOG4807|consensus 20.4 5.7E+02 0.012 22.2 16.3 125 26-153 358-494 (593)
271 PF08340 DUF1732: Domain of un 20.4 1.3E+02 0.0027 20.2 2.7 45 25-69 9-54 (87)
272 KOG3156|consensus 20.2 4.3E+02 0.0094 20.7 6.4 20 18-37 128-147 (220)
273 PF00769 ERM: Ezrin/radixin/mo 20.2 4.4E+02 0.0095 20.8 15.4 36 106-141 83-118 (246)
No 1
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.83 E-value=4.6e-22 Score=179.79 Aligned_cols=105 Identities=77% Similarity=1.008 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy16513 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLA 80 (156)
Q Consensus 1 l~~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~ 80 (156)
|+++|.+|+++|++++.+|+|+||.|++|..||++|..+|++.+++++++.++++++|.+|..|++.|++....++.++.
T Consensus 44 lq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~ 123 (859)
T PF01576_consen 44 LQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEATLA 123 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH
Q psy16513 81 NLRKKHNDAVSEMGEQIDQLNKLKT 105 (156)
Q Consensus 81 ~~k~k~~~~~~el~~q~~~l~r~k~ 105 (156)
.+|+||++.+.+|+.++++++|.++
T Consensus 124 ~lrkkh~~~~~eL~eqle~lqk~k~ 148 (859)
T PF01576_consen 124 ELRKKHQDAVAELNEQLEQLQKQKA 148 (859)
T ss_dssp -------------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999997
No 2
>KOG0161|consensus
Probab=99.73 E-value=4.8e-16 Score=147.54 Aligned_cols=105 Identities=64% Similarity=0.900 Sum_probs=102.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy16513 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLA 80 (156)
Q Consensus 1 l~~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~ 80 (156)
|+++|.+|.++++.++..|+|++|.+++|..++++|..+|++..+.+.++.+++++++.++..+++.+++.+..++..+.
T Consensus 1102 L~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~ 1181 (1930)
T KOG0161|consen 1102 LEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIE 1181 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH
Q psy16513 81 NLRKKHNDAVSEMGEQIDQLNKLKT 105 (156)
Q Consensus 81 ~~k~k~~~~~~el~~q~~~l~r~k~ 105 (156)
.++.+|++.+.++..+++++++.|.
T Consensus 1182 ~lr~~~~~~~~el~~qle~l~~~k~ 1206 (1930)
T KOG0161|consen 1182 ELRKKHADSLAELQEQLEQLQKDKA 1206 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887
No 3
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.80 E-value=8.2e-10 Score=100.66 Aligned_cols=142 Identities=31% Similarity=0.472 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy16513 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANL 82 (156)
Q Consensus 3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~ 82 (156)
..|.+|.++|+++++.++++||.|+.|..++++|..+|+.+++.+...++.+++++.++.+++.++++..+.... +...
T Consensus 131 ~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~e-l~~~ 209 (859)
T PF01576_consen 131 DAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNE-LTEQ 209 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999995 9999
Q ss_pred HHhhHHHHHHHHHHH-------HHHHHHHH----HhHHHHhhHHH-------HHHHHHHHHHHHH--------------H
Q psy16513 83 RKKHNDAVSEMGEQI-------DQLNKLKT----KLDEANRTIND-------LDVARKKLIIENS--------------D 130 (156)
Q Consensus 83 k~k~~~~~~el~~q~-------~~l~r~k~----~lee~~r~~~e-------l~~~~~~l~~E~~--------------e 130 (156)
+.|+...+.+|..++ .++.|.+. +++++++.+.+ |.+.++.++++++ +
T Consensus 210 k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~ 289 (859)
T PF01576_consen 210 KAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSE 289 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 999998666666654 66666665 66666665544 6666677776663 7
Q ss_pred HHHHHHHHHHHHHHH
Q psy16513 131 LVRQLSKVTADARMW 145 (156)
Q Consensus 131 l~r~l~e~e~~~~~~ 145 (156)
+.++|+.++.++.+|
T Consensus 290 l~~qlsk~~~El~~~ 304 (859)
T PF01576_consen 290 LERQLSKLNAELEQW 304 (859)
T ss_dssp ---------------
T ss_pred HHHHHHHHhhHHHHH
Confidence 777777788877777
No 4
>KOG0161|consensus
Probab=98.54 E-value=1.1e-05 Score=78.31 Aligned_cols=140 Identities=27% Similarity=0.428 Sum_probs=123.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy16513 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLAN 81 (156)
Q Consensus 2 ~~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~ 81 (156)
...++++++.++.......++|+.+..|..|++++...++..........+..++++.-+++|++..+.....+.....+
T Consensus 1385 ~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e 1464 (1930)
T KOG0161|consen 1385 QQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRE 1464 (1930)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999988887777
Q ss_pred HHHhhH------HHHHHHHHHHHHHHHHHH-----------HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 82 LRKKHN------DAVSEMGEQIDQLNKLKT-----------KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTAD 141 (156)
Q Consensus 82 ~k~k~~------~~~~el~~q~~~l~r~k~-----------~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~ 141 (156)
.+.... ..++++..+++++.|.+. .+.++.+.+.++...++.+..++.+|+.+|.+++..
T Consensus 1465 ~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~ 1541 (1930)
T KOG0161|consen 1465 LRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAA 1541 (1930)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665544 377888888887777665 667777888889999999999999999999999985
No 5
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.28 E-value=0.038 Score=40.32 Aligned_cols=121 Identities=18% Similarity=0.327 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHH-
Q psy16513 30 ARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMG---EQIDQLNKLKT- 105 (156)
Q Consensus 30 ~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~---~q~~~l~r~k~- 105 (156)
..|.+......+.+-........-....+.++..|..++.-....++. +......+...+++.. ..+++|+|--.
T Consensus 6 k~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~-~~~~l~~~k~~lee~~~~~~~~E~l~rriq~ 84 (143)
T PF12718_consen 6 KLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDK-LEEQLKEAKEKLEESEKRKSNAEQLNRRIQL 84 (143)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHhHHHHHhhHHH
Confidence 334444444444444333333344444555555555555555544442 3222222222222222 22334443332
Q ss_pred ---HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16513 106 ---KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYET 151 (156)
Q Consensus 106 ---~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e~ 151 (156)
.++.+...+.+....++....-.+.+.|.+..++.....|-.||+.
T Consensus 85 LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ee 133 (143)
T PF12718_consen 85 LEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEE 133 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6666777788888888888888899999999999999999999985
No 6
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.16 E-value=0.094 Score=42.47 Aligned_cols=64 Identities=30% Similarity=0.498 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANI 73 (156)
Q Consensus 3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~ 73 (156)
..|.++...|+....-+++++-....+..+++++...++.. ...+...+.++..++..+++.+.
T Consensus 54 ~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e-------~~~~~~le~el~~lrk~ld~~~~ 117 (312)
T PF00038_consen 54 EELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE-------LAERKDLEEELESLRKDLDEETL 117 (312)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhhhhhhhhhh
Confidence 34556666666666666777777777777777776666555 22333344444444444444433
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.00 E-value=0.25 Score=46.41 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=7.6
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q psy16513 21 KAEKQRADLARELEELGERL 40 (156)
Q Consensus 21 k~EK~k~~l~~Ele~l~~~l 40 (156)
++++....+..+++.+..++
T Consensus 326 ~~~~~~~~l~~~~~~l~~~~ 345 (1164)
T TIGR02169 326 KLEAEIDKLLAEIEELEREI 345 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 8
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.94 E-value=0.13 Score=40.42 Aligned_cols=44 Identities=9% Similarity=0.176 Sum_probs=31.0
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513 107 LDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYE 150 (156)
Q Consensus 107 lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e 150 (156)
+..+...+.+.......+...+..|.+.+..++..+..|+.+|.
T Consensus 178 i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~ 221 (237)
T PF00261_consen 178 IRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYK 221 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555555667999999999999999999986
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.61 E-value=0.64 Score=43.68 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16513 121 RKKLIIENSDLVRQLSKVTADA 142 (156)
Q Consensus 121 ~~~l~~E~~el~r~l~e~e~~~ 142 (156)
+..+..++..+..++..+...+
T Consensus 471 l~~~~~~l~~l~~~l~~l~~~~ 492 (1164)
T TIGR02169 471 LYDLKEEYDRVEKELSKLQREL 492 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444443
No 10
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.43 E-value=0.41 Score=39.29 Aligned_cols=26 Identities=23% Similarity=0.556 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16513 126 IENSDLVRQLSKVTADARMWKIKYET 151 (156)
Q Consensus 126 ~E~~el~r~l~e~e~~~~~~r~k~e~ 151 (156)
.|.+.+.+.+..++.+...|++|||.
T Consensus 244 ~Emekm~Kk~kklEKE~~~~k~k~e~ 269 (309)
T PF09728_consen 244 KEMEKMSKKIKKLEKENQTWKSKWEK 269 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34468888888889999999999984
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=96.23 E-value=0.98 Score=41.68 Aligned_cols=49 Identities=20% Similarity=0.189 Sum_probs=18.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 22 AEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEE 70 (156)
Q Consensus 22 ~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee 70 (156)
+......+..+++.+...+................++....+++..+.+
T Consensus 284 ~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~ 332 (880)
T PRK02224 284 LRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEE 332 (880)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433222222222223344444444444433
No 12
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.21 E-value=0.51 Score=38.17 Aligned_cols=62 Identities=29% Similarity=0.318 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 8 LEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLE 69 (156)
Q Consensus 8 L~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~le 69 (156)
+...++..+.-....-..+..+..++..|...++.........+.....+..++.+++...+
T Consensus 80 l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~he 141 (312)
T PF00038_consen 80 LKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHE 141 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhh
Confidence 33444444433333444455555555555555555544444433333444444444444333
No 13
>PRK11637 AmiB activator; Provisional
Probab=96.08 E-value=0.77 Score=39.07 Aligned_cols=74 Identities=14% Similarity=0.271 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy16513 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHES 77 (156)
Q Consensus 4 ~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~ 77 (156)
.+.++..++.........+.+....+..++..+..+|..+...-.....-....+.++..++..+.........
T Consensus 48 ~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 48 QLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444445555555555555555554444433333333344444555555554444444443
No 14
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.08 E-value=1.7 Score=42.88 Aligned_cols=69 Identities=14% Similarity=0.209 Sum_probs=43.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHH-------HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513 82 LRKKHNDAVSEMGEQIDQLNKLKT-------KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYE 150 (156)
Q Consensus 82 ~k~k~~~~~~el~~q~~~l~r~k~-------~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e 150 (156)
....++..+..+...+..+.+++. -.+++...+..+......+..++.++...+..++..+.+.+..|.
T Consensus 405 el~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~ 480 (1486)
T PRK04863 405 ALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQ 480 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555555 334566666667777777777777777777777777777766654
No 15
>PRK09039 hypothetical protein; Validated
Probab=96.02 E-value=0.73 Score=38.33 Aligned_cols=11 Identities=0% Similarity=0.341 Sum_probs=6.9
Q ss_pred HHHHHHHHHHh
Q psy16513 139 TADARMWKIKY 149 (156)
Q Consensus 139 e~~~~~~r~k~ 149 (156)
..++..||..|
T Consensus 189 ~~~l~~~~~~~ 199 (343)
T PRK09039 189 VQELNRYRSEF 199 (343)
T ss_pred HHHHHHhHHHH
Confidence 44566777666
No 16
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.70 E-value=0.97 Score=37.21 Aligned_cols=132 Identities=19% Similarity=0.287 Sum_probs=63.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHH
Q psy16513 18 SRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQI 97 (156)
Q Consensus 18 ~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~ 97 (156)
.+..++.....|..+...|...+..+.+...........+..++..++....+...--...+..++..+...-.++...-
T Consensus 150 l~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k 229 (325)
T PF08317_consen 150 LKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKK 229 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555556666666555555555555444445566666666666665543333346556555444333322222
Q ss_pred HHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHh
Q psy16513 98 DQLNKLKTKLDEANRTINDLDVARKKLIIENSDLVRQLSKV----TADARMWKIKY 149 (156)
Q Consensus 98 ~~l~r~k~~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~----e~~~~~~r~k~ 149 (156)
..+...+.++..++..+.++...+..+..+..++.+.++.. ..++..++.+|
T Consensus 230 ~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~ 285 (325)
T PF08317_consen 230 KELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKV 285 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 22222233334444444445555555555554444444322 23344444444
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.37 E-value=2.7 Score=40.32 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=13.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 111 NRTINDLDVARKKLIIENSDLVRQLSKVTAD 141 (156)
Q Consensus 111 ~r~~~el~~~~~~l~~E~~el~r~l~e~e~~ 141 (156)
...+.++...+..+..+..++.+++.++...
T Consensus 869 ~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~ 899 (1163)
T COG1196 869 EAEKEELEDELKELEEEKEELEEELRELESE 899 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444443
No 18
>KOG0977|consensus
Probab=95.24 E-value=1.4 Score=38.91 Aligned_cols=82 Identities=22% Similarity=0.248 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy16513 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLR 83 (156)
Q Consensus 4 ~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k 83 (156)
.+..++-.+...++-...+|-+..+|..|..-|..+|..+-+..-.-.-++..++..+..|..+|+-....+...+.+.+
T Consensus 149 ~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~ 228 (546)
T KOG0977|consen 149 RLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEER 228 (546)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 44555555555555556666666666666666555555544433333333333444455555555555544444444443
Q ss_pred Hh
Q psy16513 84 KK 85 (156)
Q Consensus 84 ~k 85 (156)
.+
T Consensus 229 ~~ 230 (546)
T KOG0977|consen 229 RK 230 (546)
T ss_pred HH
Confidence 33
No 19
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.14 E-value=1.1 Score=34.46 Aligned_cols=105 Identities=20% Similarity=0.294 Sum_probs=74.6
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHhHHHHhhHHHH
Q psy16513 45 GATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKH-------NDAVSEMGEQIDQLNKLKTKLDEANRTINDL 117 (156)
Q Consensus 45 ~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~-------~~~~~el~~q~~~l~r~k~~lee~~r~~~el 117 (156)
+.+.....+.+.+-.++.+++...+.....+.. +..--.++ ...+.+|..++.+-.+-+..+..++..+..+
T Consensus 20 dIT~~NL~lIksLKeei~emkk~e~~~~k~m~e-i~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ 98 (201)
T PF13851_consen 20 DITLNNLELIKSLKEEIAEMKKKEERNEKLMAE-ISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKEL 98 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777777777777766666555553 33333333 3466777777777667776777777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513 118 DVARKKLIIENSDLVRQLSKVTADARMWKIKYE 150 (156)
Q Consensus 118 ~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e 150 (156)
...+..|.-+...|...+...+.+...|..+|+
T Consensus 99 ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 99 EKELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888887
No 20
>PRK02224 chromosome segregation protein; Provisional
Probab=94.92 E-value=3.1 Score=38.44 Aligned_cols=10 Identities=20% Similarity=0.208 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q psy16513 89 AVSEMGEQID 98 (156)
Q Consensus 89 ~~~el~~q~~ 98 (156)
.+.++..++.
T Consensus 628 ~l~~~r~~i~ 637 (880)
T PRK02224 628 RLAEKRERKR 637 (880)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 21
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.90 E-value=2.6 Score=37.38 Aligned_cols=39 Identities=31% Similarity=0.300 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy16513 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLE 41 (156)
Q Consensus 3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le 41 (156)
.+|..|-+.++.+..++..+++....+..-+..+..+..
T Consensus 289 ~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~ 327 (569)
T PRK04778 289 ERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNK 327 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 356666666667777777776666665555555544443
No 22
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.85 E-value=4.2 Score=39.60 Aligned_cols=40 Identities=10% Similarity=0.170 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHH
Q psy16513 57 REAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQI 97 (156)
Q Consensus 57 ~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~ 97 (156)
++.++..+...++......+. +.....++...+..|...+
T Consensus 827 le~ei~~~~~el~~l~~~~e~-l~~e~e~~~~eI~~Lq~ki 866 (1311)
T TIGR00606 827 VNQEKQEKQHELDTVVSKIEL-NRKLIQDQQEQIQHLKSKT 866 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 444455555555555444442 4444444455555554443
No 23
>KOG0612|consensus
Probab=94.82 E-value=4 Score=39.22 Aligned_cols=85 Identities=22% Similarity=0.253 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy16513 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANL 82 (156)
Q Consensus 3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~ 82 (156)
..+.+..+.+..+...+.+++..-+++..+++++....+.+.+...-...+++.++.....++.+.++...-.. ...++
T Consensus 494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~-~~~e~ 572 (1317)
T KOG0612|consen 494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRK-HSKEL 572 (1317)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhh-hhhhh
Confidence 34556666677777777777777777777777776666666666666666666666666666655555544444 23444
Q ss_pred HHhhHH
Q psy16513 83 RKKHND 88 (156)
Q Consensus 83 k~k~~~ 88 (156)
...++.
T Consensus 573 ~~~iq~ 578 (1317)
T KOG0612|consen 573 SKQIQQ 578 (1317)
T ss_pred hHHHHH
Confidence 444333
No 24
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.71 E-value=2.6 Score=36.67 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16513 7 ELEEEVEVERQSRAKAEKQRADLARELEEL 36 (156)
Q Consensus 7 EL~e~le~e~~~r~k~EK~k~~l~~Ele~l 36 (156)
++..+++........++.+...+..++.++
T Consensus 217 ~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 217 RKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 25
>KOG0995|consensus
Probab=94.46 E-value=3.3 Score=36.66 Aligned_cols=130 Identities=16% Similarity=0.272 Sum_probs=62.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHH---HHHHH
Q psy16513 17 QSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHND---AVSEM 93 (156)
Q Consensus 17 ~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~---~~~el 93 (156)
..+.++++....+..++++|......+-.--.. .+....++.-+.+.++.|.....-+.+.+..++.|.+. .++.+
T Consensus 221 Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e-~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l 299 (581)
T KOG0995|consen 221 ELKHRLEKYFTSIANEIEDLKKTNRELEEMINE-REKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEML 299 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 445677777777777777776654443221111 11112234444444444444444444455555544433 22222
Q ss_pred HH----HHHHHHHHHHHhHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 94 GE----QIDQLNKLKTKLDEANRTIND---LDVARKKLIIENSDLVRQLSKVTADARMWKI 147 (156)
Q Consensus 94 ~~----q~~~l~r~k~~lee~~r~~~e---l~~~~~~l~~E~~el~r~l~e~e~~~~~~r~ 147 (156)
.+ ..+...+++.+.++++..+.- -.....++.+|+..|.|.|.+.+.++..|..
T Consensus 300 ~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k 360 (581)
T KOG0995|consen 300 KSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSK 360 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 223333444444444443322 2335556666666666666666666655543
No 26
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.37 E-value=3.7 Score=36.91 Aligned_cols=42 Identities=24% Similarity=0.416 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Q psy16513 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAG 44 (156)
Q Consensus 3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~ 44 (156)
.++..|.+++..++.-+...-..-..|.+.|..|..++....
T Consensus 29 qr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~ 70 (617)
T PF15070_consen 29 QRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP 70 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 456677777777777666666667777777777776665443
No 27
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.21 E-value=3.7 Score=36.30 Aligned_cols=43 Identities=26% Similarity=0.316 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Q psy16513 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAG 44 (156)
Q Consensus 2 ~~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~ 44 (156)
+..+++.....+.+......+++....|..+++.|..+|....
T Consensus 142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ 184 (546)
T PF07888_consen 142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEE 184 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666667777777777777777777777777765443
No 28
>KOG0971|consensus
Probab=94.03 E-value=5.4 Score=37.45 Aligned_cols=62 Identities=16% Similarity=0.206 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q psy16513 25 QRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKH 86 (156)
Q Consensus 25 ~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~ 86 (156)
.+.....|++|....++-++-.+-..++..-.+..++.-++-+++++...++-.-+++-.+.
T Consensus 298 ~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG 359 (1243)
T KOG0971|consen 298 AKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKG 359 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455556666666666666666666666666777777777778877777765444554443
No 29
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.99 E-value=4.8 Score=36.74 Aligned_cols=144 Identities=26% Similarity=0.255 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcC----------ccHHH-HHHHHHHHHHHHHHHHHH---H
Q psy16513 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGG----------ATSAQ-IELNKKREAEMSKLRRDL---E 69 (156)
Q Consensus 4 ~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~----------~~~~~-~~~~kk~E~el~~l~~~l---e 69 (156)
.+..|+-.|-.+++.|..+|++...-...--. +=+.+.. ..+.+ -..++.+|.++..|+++| +
T Consensus 489 ~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~---ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~ke 565 (697)
T PF09726_consen 489 SLQQLEKRLAEERRQRASLEKQLQEERKARKE---EEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKE 565 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777754443322111 1011111 11111 112234788888888765 5
Q ss_pred HHHHhhHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHH----HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 70 EANIQHESTLANLRKK---HNDAVSEMGEQIDQLNKLKT----KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADA 142 (156)
Q Consensus 70 e~~~~~e~~~~~~k~k---~~~~~~el~~q~~~l~r~k~----~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~ 142 (156)
+..+..+..+..++.- .....+.|..-+..++.-.. -|..=+|-+.+|.+.+.....++.-++.++-.-+.++
T Consensus 566 e~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei 645 (697)
T PF09726_consen 566 EQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEI 645 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666556556553 12345555555555544433 3334456666777777777777777777777777777
Q ss_pred HHHHHHhh
Q psy16513 143 RMWKIKYE 150 (156)
Q Consensus 143 ~~~r~k~e 150 (156)
.+++.|..
T Consensus 646 ~~lk~ki~ 653 (697)
T PF09726_consen 646 EELKAKIA 653 (697)
T ss_pred HHHHHHHH
Confidence 77777654
No 30
>PRK11637 AmiB activator; Provisional
Probab=93.96 E-value=3.5 Score=35.08 Aligned_cols=73 Identities=16% Similarity=0.148 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQH 75 (156)
Q Consensus 3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~ 75 (156)
..|..+...+...+.....++.....+..++..+...|......-.....-....+.++..++..++.....+
T Consensus 54 ~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 54 QDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555554444444444444444444444444444444333
No 31
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.86 E-value=4.4 Score=35.86 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q psy16513 129 SDLVRQLSKVTADA 142 (156)
Q Consensus 129 ~el~r~l~e~e~~~ 142 (156)
..|..+|.++..++
T Consensus 335 aql~~qLad~~l~l 348 (546)
T PF07888_consen 335 AQLKLQLADASLEL 348 (546)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555554444
No 32
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=93.79 E-value=0.37 Score=33.10 Aligned_cols=33 Identities=42% Similarity=0.601 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy16513 11 EVEVERQSRAKAEKQRADLARELEELGERLEEA 43 (156)
Q Consensus 11 ~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~ 43 (156)
.|..++..|..++..+..+..|+++|++.|.+-
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeE 34 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEE 34 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788999999999999999999999999443
No 33
>KOG0996|consensus
Probab=93.65 E-value=7 Score=37.52 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q psy16513 11 EVEVERQSRAKAEKQRADLARELE 34 (156)
Q Consensus 11 ~le~e~~~r~k~EK~k~~l~~Ele 34 (156)
.+.....-..|++|+.-....+.+
T Consensus 406 ~lK~~~~k~kKleke~ek~~~~~~ 429 (1293)
T KOG0996|consen 406 KLKRLTSKIKKLEKEIEKARRKKS 429 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHH
Confidence 333333333333333333333333
No 34
>KOG4674|consensus
Probab=93.61 E-value=8.8 Score=38.54 Aligned_cols=140 Identities=18% Similarity=0.186 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHH
Q psy16513 11 EVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAV 90 (156)
Q Consensus 11 ~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~ 90 (156)
.+++++.-.--+-.....|..+++.|..+...++..-...+-....++......+..++.....+...++.++.+++..+
T Consensus 746 ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~ 825 (1822)
T KOG4674|consen 746 ELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKS 825 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433333333344566666666666666665555555566667777788888888777777777888888777655
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy16513 91 SEMGEQIDQLNKLKTKLDEANRTIND-------LDVARKKLIIENSDLVRQLSKVTADARMWKIKYETNK 153 (156)
Q Consensus 91 ~el~~q~~~l~r~k~~lee~~r~~~e-------l~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e~~~ 153 (156)
.++.+-...+. ..+..+...+.+ +...+..++.....+.-.+.+++..+.-....|.+..
T Consensus 826 ~~~r~l~~~~~---~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~ 892 (1822)
T KOG4674|consen 826 SDLRELTNSLE---KQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLD 892 (1822)
T ss_pred HHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Confidence 54444332211 134444444444 4444444444555555555555555555555554443
No 35
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.61 E-value=2.6 Score=32.42 Aligned_cols=127 Identities=23% Similarity=0.322 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy16513 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANL 82 (156)
Q Consensus 3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~ 82 (156)
.-|..|.+++...++.-...++.-.++..|...|..-| ++.+.++.+|++.+........ .+..+
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL--------------~~a~~e~~eL~k~L~~y~kdK~-~L~~~ 91 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPL--------------KKAEEEVEELRKQLKNYEKDKQ-SLQNL 91 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------------HHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 45788999999999988888888888888888887766 3455666677777777666666 36666
Q ss_pred HHhhHH---HHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH
Q psy16513 83 RKKHND---AVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLII---------------ENSDLVRQLSKVTADARM 144 (156)
Q Consensus 83 k~k~~~---~~~el~~q~~~l~r~k~~lee~~r~~~el~~~~~~l~~---------------E~~el~r~l~e~e~~~~~ 144 (156)
+.++.. .+..+.-..+.|. .++..+.+.+.+|.......-. -+..+...|+..++++..
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~---qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~e 168 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLE---QRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNE 168 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666543 2333332222211 1333333334443333333222 225777788888888887
Q ss_pred HHH
Q psy16513 145 WKI 147 (156)
Q Consensus 145 ~r~ 147 (156)
|-+
T Consensus 169 vl~ 171 (201)
T PF13851_consen 169 VLA 171 (201)
T ss_pred HHH
Confidence 744
No 36
>KOG0977|consensus
Probab=93.15 E-value=5.8 Score=35.11 Aligned_cols=47 Identities=26% Similarity=0.291 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 26 RADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN 72 (156)
Q Consensus 26 k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~ 72 (156)
+.-+..|+..+..-|+++....+..+.-.+++..++.+++..+++..
T Consensus 87 k~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~ 133 (546)
T KOG0977|consen 87 KAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAE 133 (546)
T ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444445555555555555443
No 37
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.13 E-value=3.6 Score=32.63 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16513 114 INDLDVARKKLIIENSDLVRQLSKVTADARMWKIKY 149 (156)
Q Consensus 114 ~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~ 149 (156)
+.++......++.+...+...+...+..+...+...
T Consensus 112 l~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~ 147 (239)
T COG1579 112 LAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARL 147 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444333
No 38
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.93 E-value=7.3 Score=35.61 Aligned_cols=125 Identities=22% Similarity=0.320 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHH----------------------HhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Q psy16513 6 YELEEEVEVERQSRAKAE----------------------KQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSK 63 (156)
Q Consensus 6 ~EL~e~le~e~~~r~k~E----------------------K~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~ 63 (156)
..++-+|-++++.|...| .-+.+|..|+.-|..+| ..-++.+..+|.++.+
T Consensus 505 ~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~el-------k~kee~~~~~e~~~~~ 577 (697)
T PF09726_consen 505 ASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRREL-------KQKEEQIRELESELQE 577 (697)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 467777878887765432 23456666666666666 4445666778888877
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 64 LRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKT----KLDEANRTINDLDVARKKLIIENSDLVRQLSKV 138 (156)
Q Consensus 64 l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~r~k~----~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~ 138 (156)
++.-.-+.....+. +-.-..-+++...-|+..+..-.|+|. -|.|++|++..+...+.+-..|+.+|..-+.+.
T Consensus 578 lr~~~~e~~~~~e~-L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 578 LRKYEKESEKDTEV-LMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred HHHHHhhhhhhHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77652222223332 222223344556678888888889997 899999999999999999999988776655544
No 39
>KOG0996|consensus
Probab=92.74 E-value=9.8 Score=36.61 Aligned_cols=68 Identities=24% Similarity=0.309 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q psy16513 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIEL----------NKKREAEMSKLRRDLEEAN 72 (156)
Q Consensus 5 i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~----------~kk~E~el~~l~~~lee~~ 72 (156)
+.++++.+-..+..-.-++-.+..+..++..+...+..+-......+.. -+-++..+.+++++++++.
T Consensus 801 ~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~q 878 (1293)
T KOG0996|consen 801 LHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQ 878 (1293)
T ss_pred HHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555556666666666666433333322222222 1224555666666666663
No 40
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.56 E-value=4.7 Score=32.47 Aligned_cols=76 Identities=17% Similarity=0.296 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhH
Q psy16513 12 VEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHN 87 (156)
Q Consensus 12 le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~ 87 (156)
+.+-...=..+.+.+.++..++++|-.+++++++......+-..+...++..++.++++..-.....-..+..+..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raR 108 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRAR 108 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344456778888999999999999999988777777777888888999999998888877765555555544
No 41
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=92.46 E-value=11 Score=36.40 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHH
Q psy16513 9 EEEVEVERQSRAKAEKQRADL 29 (156)
Q Consensus 9 ~e~le~e~~~r~k~EK~k~~l 29 (156)
..++......-.+.+.....+
T Consensus 673 ~~~l~~~~~~~~~~~~~~~~~ 693 (1163)
T COG1196 673 EEELAELEAQLEKLEEELKSL 693 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 42
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.28 E-value=5.6 Score=32.74 Aligned_cols=70 Identities=14% Similarity=0.136 Sum_probs=33.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHH
Q psy16513 20 AKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDA 89 (156)
Q Consensus 20 ~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~ 89 (156)
..++.....|..+..-|...+.-+.+........-..+..++..|+...++...--...+..+|.++...
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~ 216 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKL 216 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHH
Confidence 3344444445555555555554444444444444444555555555555554332222344455444443
No 43
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=91.37 E-value=15 Score=35.67 Aligned_cols=95 Identities=19% Similarity=0.358 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy16513 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLR 83 (156)
Q Consensus 4 ~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k 83 (156)
+++.+...+.........+|+........++.+...+..+ .-..+..+..+..++.............+..-+
T Consensus 608 ~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 680 (1201)
T PF12128_consen 608 RLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQA-------EQELKQAEQDLQRLKNEREQLKQEIEEAKEERK 680 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444444555555555555555555544333 223344556667777777777777776677777
Q ss_pred HhhHHHHHHHHHHHHHHHHHHH
Q psy16513 84 KKHNDAVSEMGEQIDQLNKLKT 105 (156)
Q Consensus 84 ~k~~~~~~el~~q~~~l~r~k~ 105 (156)
.++..++..+...+..+.....
T Consensus 681 ~~~~~~l~~l~~~l~~~~~e~~ 702 (1201)
T PF12128_consen 681 EQIEEQLNELEEELKQLKQELE 702 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777766654433
No 44
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=90.41 E-value=13 Score=33.49 Aligned_cols=48 Identities=29% Similarity=0.424 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16513 27 ADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQ 74 (156)
Q Consensus 27 ~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~ 74 (156)
..|..|++.|..++............++...+..+.++.+.+++....
T Consensus 90 ~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~ 137 (617)
T PF15070_consen 90 EHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQ 137 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554443333333444455566666666666555443
No 45
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.09 E-value=6.7 Score=29.74 Aligned_cols=19 Identities=37% Similarity=0.426 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy16513 113 TINDLDVARKKLIIENSDL 131 (156)
Q Consensus 113 ~~~el~~~~~~l~~E~~el 131 (156)
.++-+...+.+|+.|+.+|
T Consensus 159 ~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 159 QLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444666666677776655
No 46
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=89.79 E-value=17 Score=33.75 Aligned_cols=71 Identities=23% Similarity=0.295 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy16513 6 YELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHE 76 (156)
Q Consensus 6 ~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e 76 (156)
.++..+|+.++-.=...+....-|..+++.|...|+.......-.....-....+.+.+...+.+..-.++
T Consensus 318 ~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d 388 (775)
T PF10174_consen 318 SDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLD 388 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666665666777788888888888888777654444444444455555555555544444444
No 47
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.75 E-value=5.6 Score=28.19 Aligned_cols=42 Identities=31% Similarity=0.392 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy16513 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEA 43 (156)
Q Consensus 2 ~~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~ 43 (156)
++.|.-++.++-+++.--.+++..|..+..|+-.|....+.+
T Consensus 22 ~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 22 QSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888888888889999999988888888766
No 48
>KOG0976|consensus
Probab=89.07 E-value=20 Score=33.57 Aligned_cols=41 Identities=24% Similarity=0.328 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy16513 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEE 42 (156)
Q Consensus 2 ~~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~ 42 (156)
|..+.+++-++-.++..++.++-++.+-.-|++.+.+++..
T Consensus 112 Qn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~ 152 (1265)
T KOG0976|consen 112 QNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHK 152 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44555566666666666666666666666666666665533
No 49
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=88.44 E-value=20 Score=32.91 Aligned_cols=15 Identities=53% Similarity=0.674 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHH
Q psy16513 3 ARIYELEEEVEVERQ 17 (156)
Q Consensus 3 ~~i~EL~e~le~e~~ 17 (156)
.+|.+|+.++...+.
T Consensus 34 ~~i~~l~~elk~~~~ 48 (717)
T PF09730_consen 34 QRILELENELKQLRQ 48 (717)
T ss_pred HHHHHHHHHHHHHHH
Confidence 466777777654443
No 50
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.35 E-value=13 Score=30.58 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy16513 9 EEEVEVERQSRAKAEKQRADLARELEELGERLEEA 43 (156)
Q Consensus 9 ~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~ 43 (156)
...++.......++...+..|..++..|.....+.
T Consensus 169 ~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~ 203 (325)
T PF08317_consen 169 DKQLEQLDELLPKLRERKAELEEELENLKQLVEEI 203 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344444445555555555555555555544443
No 51
>KOG0250|consensus
Probab=87.57 E-value=27 Score=33.40 Aligned_cols=45 Identities=9% Similarity=0.179 Sum_probs=23.5
Q ss_pred HhHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513 106 KLDEANRTI-NDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYE 150 (156)
Q Consensus 106 ~lee~~r~~-~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e 150 (156)
++.+++... .++...+...+.+...|.+++++++.+++..|.++.
T Consensus 380 ~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~ 425 (1074)
T KOG0250|consen 380 QIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELN 425 (1074)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333 334445555555555666666666666555555543
No 52
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=87.38 E-value=20 Score=31.76 Aligned_cols=52 Identities=10% Similarity=0.098 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy16513 25 QRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHE 76 (156)
Q Consensus 25 ~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e 76 (156)
.-..+...++.|-..|+.-..+.....+...+....+..++...........
T Consensus 283 ~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~ 334 (569)
T PRK04778 283 KNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEID 334 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777766666666666666666665555555554444444
No 53
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.03 E-value=7.2 Score=30.78 Aligned_cols=69 Identities=25% Similarity=0.360 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHH
Q psy16513 28 DLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQI 97 (156)
Q Consensus 28 ~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~ 97 (156)
++...+++++..|++....+....+-...++.++.+++-.+........ .+..+++++-..+..|....
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s-~LeE~~~~l~~ev~~L~~r~ 200 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENS-RLEEMLKKLPGEVYDLKKRW 200 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhchhHHHHHHHHH
Confidence 5555555555555555554444444444455555555555555444444 34555555444444444333
No 54
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=86.36 E-value=22 Score=31.23 Aligned_cols=38 Identities=29% Similarity=0.409 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy16513 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERL 40 (156)
Q Consensus 3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~l 40 (156)
..|..|.+.|+..+.....+++.+..+..+.+.....+
T Consensus 179 ~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~ 216 (522)
T PF05701_consen 179 KEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEW 216 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666655555555444444
No 55
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=85.87 E-value=36 Score=33.10 Aligned_cols=12 Identities=8% Similarity=0.415 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q psy16513 130 DLVRQLSKVTAD 141 (156)
Q Consensus 130 el~r~l~e~e~~ 141 (156)
.+..++..++.+
T Consensus 775 ~l~~~i~~L~~~ 786 (1201)
T PF12128_consen 775 QLKQEIEQLEKE 786 (1201)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 56
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=85.50 E-value=17 Score=28.92 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=19.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 21 KAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEA 71 (156)
Q Consensus 21 k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~ 71 (156)
..-+.-..+..+++.+...+..+....-.......+.+.++.+++.++...
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~ 78 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRA 78 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444443333333333333333444444444443333
No 57
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=85.32 E-value=15 Score=28.21 Aligned_cols=60 Identities=25% Similarity=0.315 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 6 YELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLE 69 (156)
Q Consensus 6 ~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~le 69 (156)
..|.++.-.+++.--.+|-.-+.|..++.+|+.++..++ -....-+-++.++.+|+..+-
T Consensus 18 ~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q----qal~~aK~l~eEledLk~~~~ 77 (193)
T PF14662_consen 18 QKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ----QALQKAKALEEELEDLKTLAK 77 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666777888888888888887663 222344556777777664433
No 58
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=84.81 E-value=31 Score=31.53 Aligned_cols=107 Identities=24% Similarity=0.276 Sum_probs=63.5
Q ss_pred HHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHH
Q psy16513 40 LEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDV 119 (156)
Q Consensus 40 le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~r~k~~lee~~r~~~el~~ 119 (156)
.+.+...-+-.+..++.+|.. .++.|++..+.|...+..+..-|+..+..|......|.+.- ..+.-.+.....
T Consensus 117 ae~Lraala~ae~~R~~lEE~---~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L---~~le~~r~~e~~ 190 (739)
T PF07111_consen 117 AEELRAALAGAEVVRKNLEEG---SQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSL---ESLETRRAGEAK 190 (739)
T ss_pred HHHHHHHHhhHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 333333334444455556533 48899999999999999999999999999988887664322 222222323344
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHhhhcC
Q psy16513 120 ARKKLIIENSDLVRQLSKV----TAD---ARMWKIKYETNK 153 (156)
Q Consensus 120 ~~~~l~~E~~el~r~l~e~----e~~---~~~~r~k~e~~~ 153 (156)
.+.-.+.+.+.|..+|++. +++ +.+.| +|-++-
T Consensus 191 ~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR-~YvGeq 230 (739)
T PF07111_consen 191 ELAEAQREADLLREQLSKTQEELEAQVTLVEQLR-KYVGEQ 230 (739)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHhhh
Confidence 4444444555555555443 333 45554 455443
No 59
>KOG0964|consensus
Probab=84.43 E-value=39 Score=32.29 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Q psy16513 9 EEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREA 59 (156)
Q Consensus 9 ~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~ 59 (156)
.++.+....-..++=|.+..|.-.+.+|+.++..-........+...+...
T Consensus 285 ~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ 335 (1200)
T KOG0964|consen 285 REEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKD 335 (1200)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHH
Confidence 333444444445555556667777777777665444443333333333333
No 60
>KOG0980|consensus
Probab=84.16 E-value=37 Score=31.89 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHH----HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 89 AVSEMGEQIDQLNKLKT----KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMWK 146 (156)
Q Consensus 89 ~~~el~~q~~~l~r~k~----~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r 146 (156)
...+|+++++.++|... +.++....+..+...+..+..+...+++.++-....-+.|-
T Consensus 467 ~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~ 528 (980)
T KOG0980|consen 467 ENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQL 528 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44455555555555444 23333333333444444444444455555444444444443
No 61
>KOG0250|consensus
Probab=84.02 E-value=41 Score=32.25 Aligned_cols=64 Identities=28% Similarity=0.370 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH
Q psy16513 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRR 66 (156)
Q Consensus 3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~ 66 (156)
..|+.|+..++.+..--.-++..++.....++.+...+..+...........++...++.+|+.
T Consensus 661 ~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 661 DEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN 724 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666655555555566666666666666666655554444444444445555555554
No 62
>KOG4674|consensus
Probab=83.67 E-value=54 Score=33.35 Aligned_cols=144 Identities=19% Similarity=0.243 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q psy16513 6 YELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKK 85 (156)
Q Consensus 6 ~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k 85 (156)
..+.-.++.++.+..-+.++++.|...++....+|+............++..-..+.++...+.+....--. ......+
T Consensus 104 ~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs-~q~k~~r 182 (1822)
T KOG4674|consen 104 DALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVS-SQLKEER 182 (1822)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 344444555666666666667777766666666665554333333333333333333333333322221111 1111112
Q ss_pred hHH--------------HHHHHHHHHHHHHHHHH--------HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 86 HND--------------AVSEMGEQIDQLNKLKT--------KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADAR 143 (156)
Q Consensus 86 ~~~--------------~~~el~~q~~~l~r~k~--------~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~ 143 (156)
+.. .+...++.+..+.|..+ +|.++...+..+......+...+.+|+.-+...+..+.
T Consensus 183 l~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls 262 (1822)
T KOG4674|consen 183 LEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELS 262 (1822)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 22222233333333322 55566666666777777777777777777777777666
Q ss_pred HHHHHhh
Q psy16513 144 MWKIKYE 150 (156)
Q Consensus 144 ~~r~k~e 150 (156)
.+|--|+
T Consensus 263 ~~k~t~~ 269 (1822)
T KOG4674|consen 263 KLKDTAE 269 (1822)
T ss_pred HHHhhhH
Confidence 6655444
No 63
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=83.64 E-value=30 Score=30.42 Aligned_cols=41 Identities=32% Similarity=0.410 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHhc
Q psy16513 4 RIYELEEEVEVERQSRAKAEKQRADLAREL-------EELGERLEEAG 44 (156)
Q Consensus 4 ~i~EL~e~le~e~~~r~k~EK~k~~l~~El-------e~l~~~le~~~ 44 (156)
.+.-+++++...+.-...+|+.|.+.-.|| ++|...|+...
T Consensus 35 eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~ 82 (522)
T PF05701_consen 35 ELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQ 82 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555 45555554443
No 64
>KOG4643|consensus
Probab=83.59 E-value=43 Score=32.09 Aligned_cols=37 Identities=32% Similarity=0.210 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy16513 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLE 41 (156)
Q Consensus 5 i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le 41 (156)
+++|++.+-.+....+.++-.--.|..|.+.|....+
T Consensus 417 ~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~ 453 (1195)
T KOG4643|consen 417 HEILEERINQLLQQLAELEDLEKKLQFELEKLLEETS 453 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444433
No 65
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=82.93 E-value=30 Score=29.79 Aligned_cols=62 Identities=26% Similarity=0.298 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Q psy16513 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKL 64 (156)
Q Consensus 3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l 64 (156)
..|..++..+..-+..+.+++++..++..++..+..+|-.+.........-....+..+..|
T Consensus 45 ~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 45 KEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 34566666666666777777777777777777777777555544444333333333333333
No 66
>KOG0980|consensus
Probab=82.64 E-value=43 Score=31.50 Aligned_cols=48 Identities=21% Similarity=0.269 Sum_probs=33.9
Q ss_pred HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy16513 106 KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYETNK 153 (156)
Q Consensus 106 ~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e~~~ 153 (156)
+..+...++..-....-.+..++.+|..+|++...+...|-+|||+.+
T Consensus 446 K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~ 493 (980)
T KOG0980|consen 446 KYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQA 493 (980)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 555555555554445556677778888888888888888888888653
No 67
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=82.55 E-value=15 Score=26.03 Aligned_cols=88 Identities=17% Similarity=0.349 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy16513 55 KKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLIIENSDLVRQ 134 (156)
Q Consensus 55 kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~r~k~~lee~~r~~~el~~~~~~l~~E~~el~r~ 134 (156)
+++|.++..++..+........ .+..++-.+...++.+......+..+...+.++......+=.=+++=.-.
T Consensus 26 r~~E~E~~~l~~el~~l~~~r~--------~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ 97 (120)
T PF12325_consen 26 RRLEGELASLQEELARLEAERD--------ELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEE 97 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4566666666666655554444 44555555666666555555566677777777777666666666666667
Q ss_pred HHHHHHHHHHHHHHhh
Q psy16513 135 LSKVTADARMWKIKYE 150 (156)
Q Consensus 135 l~e~e~~~~~~r~k~e 150 (156)
++++...+.+.|.=|-
T Consensus 98 veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 98 VEELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888877664
No 68
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=82.39 E-value=2.2 Score=38.79 Aligned_cols=43 Identities=26% Similarity=0.283 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcC
Q psy16513 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGG 45 (156)
Q Consensus 3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~ 45 (156)
..+..+...+........++++.+.-+..|++-|+..|+.+-.
T Consensus 385 ~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~ 427 (722)
T PF05557_consen 385 KEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDK 427 (722)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566677777778888889999999999999999999877654
No 69
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=82.35 E-value=22 Score=28.14 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q psy16513 87 NDAVSEMGEQIDQLNKLKTKLD 108 (156)
Q Consensus 87 ~~~~~el~~q~~~l~r~k~~le 108 (156)
...+++.++.+..+...+++++
T Consensus 162 e~e~ee~~erlk~le~E~s~Le 183 (290)
T COG4026 162 EAEYEEVQERLKRLEVENSRLE 183 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445554444444444333
No 70
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=81.86 E-value=39 Score=30.41 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy16513 57 REAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLK 104 (156)
Q Consensus 57 ~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~r~k 104 (156)
....+..|..+++....-+......++.++.....+....+..++..+
T Consensus 406 s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r 453 (594)
T PF05667_consen 406 SEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELR 453 (594)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 455666677777777776666677777666654444444444444333
No 71
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=80.88 E-value=32 Score=28.88 Aligned_cols=33 Identities=15% Similarity=0.304 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy16513 10 EEVEVERQSRAKAEKQRADLARELEELGERLEE 42 (156)
Q Consensus 10 e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~ 42 (156)
-+|+..+..+..++..-.+....|+-|..++..
T Consensus 220 ~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~ 252 (359)
T PF10498_consen 220 SHLEQMKQHKKSIESALPETKSQLDKLQQDISK 252 (359)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666665533
No 72
>KOG1029|consensus
Probab=80.76 E-value=50 Score=30.92 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy16513 26 RADLARELEELGERLEEA 43 (156)
Q Consensus 26 k~~l~~Ele~l~~~le~~ 43 (156)
+..|.-|++.|...+..+
T Consensus 439 ~~ql~~eletLn~k~qql 456 (1118)
T KOG1029|consen 439 KKQLQQELETLNFKLQQL 456 (1118)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555554443
No 73
>KOG0964|consensus
Probab=79.74 E-value=59 Score=31.15 Aligned_cols=71 Identities=20% Similarity=0.321 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy16513 6 YELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHE 76 (156)
Q Consensus 6 ~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e 76 (156)
.+....+++...--.+++-.+..+..+.+.+..++-.+.+.+...++-.-.....+..++..+.......+
T Consensus 695 ~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~ 765 (1200)
T KOG0964|consen 695 EDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSN 765 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555556677778888888888888888777777776665555555555555555554444444
No 74
>KOG1850|consensus
Probab=78.91 E-value=37 Score=28.31 Aligned_cols=46 Identities=20% Similarity=0.408 Sum_probs=31.7
Q ss_pred HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16513 106 KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYET 151 (156)
Q Consensus 106 ~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e~ 151 (156)
++++.+-.+.--+..+.....|..-+.+-..+.+-+.--||+|||.
T Consensus 230 Kyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~ 275 (391)
T KOG1850|consen 230 KYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWEN 275 (391)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444455555667778888888889999999999984
No 75
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=78.59 E-value=57 Score=30.36 Aligned_cols=41 Identities=29% Similarity=0.336 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHhcCccHH
Q psy16513 9 EEEVEVERQSRAKAEKQRADLAR---ELEELGERLEEAGGATSA 49 (156)
Q Consensus 9 ~e~le~e~~~r~k~EK~k~~l~~---Ele~l~~~le~~~~~~~~ 49 (156)
+..-....+++++++..+.+|+. |+..+.+.|+.+...-..
T Consensus 276 e~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d 319 (775)
T PF10174_consen 276 EVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSD 319 (775)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33333445566667776666653 566666666655544333
No 76
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=78.02 E-value=37 Score=27.92 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy16513 5 IYELEEEVEVERQSRA 20 (156)
Q Consensus 5 i~EL~e~le~e~~~r~ 20 (156)
+.||...+..-|..-.
T Consensus 72 C~EL~~~I~egr~~~~ 87 (312)
T smart00787 72 CKELKKYISEGRDLFK 87 (312)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 77
>KOG4196|consensus
Probab=77.28 E-value=11 Score=27.10 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16513 113 TINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYET 151 (156)
Q Consensus 113 ~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e~ 151 (156)
+..+|......|..+.+.|...++..--++.-|+.||+.
T Consensus 75 Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~ 113 (135)
T KOG4196|consen 75 QKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEA 113 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666677777777788888874
No 78
>PHA02562 46 endonuclease subunit; Provisional
Probab=76.21 E-value=52 Score=28.63 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=24.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 17 QSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEE 70 (156)
Q Consensus 17 ~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee 70 (156)
.....+......+..+++.+..++..+...........+.++..+..++..+..
T Consensus 220 ~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~ 273 (562)
T PHA02562 220 NKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQ 273 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555555555555555444333333333344444444444333
No 79
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=75.02 E-value=0.94 Score=41.19 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy16513 114 INDLDVARKKLI---IENSDLVRQLSKVTADARMWKIKYETN 152 (156)
Q Consensus 114 ~~el~~~~~~l~---~E~~el~r~l~e~e~~~~~~r~k~e~~ 152 (156)
+..|..++.+++ .++.+++-+...++.+...|.+ |..+
T Consensus 290 ~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~s-l~~~ 330 (722)
T PF05557_consen 290 KRSLQRKLERLEELEEELAELQLENEKLEDELNSWES-LLQD 330 (722)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 333455444443 5667788888888999999976 4434
No 80
>PRK10869 recombination and repair protein; Provisional
Probab=74.65 E-value=62 Score=28.73 Aligned_cols=93 Identities=16% Similarity=0.176 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHH------HHHHHHHHHHHHHHHHHHh-----------HHHHhhHHH---
Q psy16513 57 REAEMSKLRRDLEEANIQHESTLANLRKKHND------AVSEMGEQIDQLNKLKTKL-----------DEANRTIND--- 116 (156)
Q Consensus 57 ~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~------~~~el~~q~~~l~r~k~~l-----------ee~~r~~~e--- 116 (156)
.+..+..+...+++.....+.....++.-... .++++++.+..+.+.+.+. +++...+..
T Consensus 259 ~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~ 338 (553)
T PRK10869 259 MDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDD 338 (553)
T ss_pred hCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhC
Confidence 34455555566666666666544444443331 4667777777666666522 122222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16513 117 LDVARKKLIIENSDLVRQLSKVTADARMWKIKY 149 (156)
Q Consensus 117 l~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~ 149 (156)
....+..|+.+...+...+.+.-..++.+|.++
T Consensus 339 ~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~a 371 (553)
T PRK10869 339 QEDDLETLALAVEKHHQQALETAQKLHQSRQRY 371 (553)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223455555555566666666666666666654
No 81
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=74.34 E-value=39 Score=26.36 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=17.4
Q ss_pred HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 106 KLDEANRTINDLDVARKKLIIENSDLVRQLSKVT 139 (156)
Q Consensus 106 ~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e 139 (156)
+++.+.+.+..|...+..|..++......+....
T Consensus 191 Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~ 224 (237)
T PF00261_consen 191 RAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQ 224 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555544433333333
No 82
>PRK10869 recombination and repair protein; Provisional
Probab=74.09 E-value=64 Score=28.64 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=47.5
Q ss_pred HHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 68 LEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLIIENSDLVRQLSKVTAD 141 (156)
Q Consensus 68 lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~r~k~~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~ 141 (156)
+++....+. .+..+++|+...++++-...+.+...-..++.....+.+|...+..+..++..+...|++.-..
T Consensus 298 l~~ie~Rl~-~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 298 LAELEQRLS-KQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred HHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555 4788888888777777777666555444555555566677777777777766666666655444
No 83
>KOG0976|consensus
Probab=73.50 E-value=83 Score=29.70 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcC
Q psy16513 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGG 45 (156)
Q Consensus 3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~ 45 (156)
+.-.++.|..-..+.-++.+.+++++...-+-.+...|+.+..
T Consensus 263 ~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkq 305 (1265)
T KOG0976|consen 263 ASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQ 305 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3344555656566666777777777666655556666655543
No 84
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=72.96 E-value=20 Score=22.31 Aligned_cols=59 Identities=19% Similarity=0.354 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 7 ELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN 72 (156)
Q Consensus 7 EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~ 72 (156)
+|+.-|+++-+++..+...-+......-.+...| ...+..++.+..++..|+..+++..
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kL-------qeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKL-------QEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677788888876665555444444444444444 3344555667777777777776643
No 85
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=71.85 E-value=46 Score=26.08 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=36.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy16513 21 KAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTL 79 (156)
Q Consensus 21 k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~ 79 (156)
++|-...-|..-+.++...|..+....+.+....+.++.++..+....+.....-...+
T Consensus 21 k~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al 79 (225)
T COG1842 21 KAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELAL 79 (225)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455666666666666666666666666666677777777666666655544433
No 86
>KOG2991|consensus
Probab=71.49 E-value=53 Score=26.59 Aligned_cols=82 Identities=26% Similarity=0.287 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHH-HHHHHHHHHHHHH-HHHHHhHHHHhhHHH------------HHHH
Q psy16513 55 KKREAEMSKLRRDLEEANIQHESTLANLRKKHND-AVSEMGEQIDQLN-KLKTKLDEANRTIND------------LDVA 120 (156)
Q Consensus 55 kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~-~~~el~~q~~~l~-r~k~~lee~~r~~~e------------l~~~ 120 (156)
.++|.++.++...+.....+..++...+|.-+-+ .|..+=..+...- -.+.++++++..+.. |...
T Consensus 139 A~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAK 218 (330)
T KOG2991|consen 139 ATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAK 218 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHH
Confidence 4478888888888888777777666666655544 3333322222211 111245554443322 6666
Q ss_pred HHHHHHHHHHHHHHHH
Q psy16513 121 RKKLIIENSDLVRQLS 136 (156)
Q Consensus 121 ~~~l~~E~~el~r~l~ 136 (156)
.+-|..|+.+|.++.+
T Consensus 219 CR~L~qENeElG~q~s 234 (330)
T KOG2991|consen 219 CRTLQQENEELGHQAS 234 (330)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 6777777776666654
No 87
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=70.77 E-value=59 Score=26.82 Aligned_cols=19 Identities=5% Similarity=0.193 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16513 129 SDLVRQLSKVTADARMWKI 147 (156)
Q Consensus 129 ~el~r~l~e~e~~~~~~r~ 147 (156)
.+...-|.++..++...|.
T Consensus 286 ~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 286 AECMAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 3333334444444444443
No 88
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=70.11 E-value=47 Score=25.40 Aligned_cols=47 Identities=19% Similarity=0.271 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16513 28 DLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQ 74 (156)
Q Consensus 28 ~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~ 74 (156)
-|..-+.++...|..+....+.+....+.++.++..+...+......
T Consensus 27 ~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 27 MLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444433
No 89
>KOG0971|consensus
Probab=70.01 E-value=1e+02 Score=29.41 Aligned_cols=48 Identities=19% Similarity=0.300 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHH
Q psy16513 7 ELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELN 54 (156)
Q Consensus 7 EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~ 54 (156)
-...++..+++.+-++-+.-..+.+-+.+|..+++-+.|+-.....+.
T Consensus 407 ~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLt 454 (1243)
T KOG0971|consen 407 KKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLT 454 (1243)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Confidence 344556677777777777777888888888888888888777765544
No 90
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=68.88 E-value=45 Score=24.77 Aligned_cols=66 Identities=20% Similarity=0.234 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy16513 11 EVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHE 76 (156)
Q Consensus 11 ~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e 76 (156)
++...+..-..+.+...++...+.++...+....+......+..+.....+..+...+......+.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~ 147 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIR 147 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555555555555444444444333444445455554444444444444
No 91
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=68.70 E-value=84 Score=27.80 Aligned_cols=93 Identities=17% Similarity=0.263 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHH------HHHHHHHHHHHHHHHHH-----------HhHHHHhhHHH---
Q psy16513 57 REAEMSKLRRDLEEANIQHESTLANLRKKHND------AVSEMGEQIDQLNKLKT-----------KLDEANRTIND--- 116 (156)
Q Consensus 57 ~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~------~~~el~~q~~~l~r~k~-----------~lee~~r~~~e--- 116 (156)
+...+..+...+++....+++....+...... .+.++.+.+..+.+.+. .++++...+..
T Consensus 264 ~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~ 343 (563)
T TIGR00634 264 IDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDD 343 (563)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhC
Confidence 44556666666666666666544444443332 46666666665555544 12222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16513 117 LDVARKKLIIENSDLVRQLSKVTADARMWKIKY 149 (156)
Q Consensus 117 l~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~ 149 (156)
....+..++.+...+...+.+.-..++..|.++
T Consensus 344 ~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~ 376 (563)
T TIGR00634 344 SDESLEALEEEVDKLEEELDKAAVALSLIRRKA 376 (563)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223444555555566666666666666665553
No 92
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=68.65 E-value=81 Score=27.62 Aligned_cols=146 Identities=16% Similarity=0.232 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy16513 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLR 83 (156)
Q Consensus 4 ~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k 83 (156)
.|..|.+.++.+-.-+.++==+|+++..-+-.|..-|..+.+.-+....-...+.-+|.+++..+--..-.+-+ .-..|
T Consensus 363 iinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~-eiQqK 441 (527)
T PF15066_consen 363 IINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMT-EIQQK 441 (527)
T ss_pred HHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHH-HHHHh
Confidence 35667777776666555555556666666666666555544433332222222333444444333333322221 22233
Q ss_pred HhhHHH-------HHHHHHHHHHHHHHHHHhHHHHhhHHH-HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhh
Q psy16513 84 KKHNDA-------VSEMGEQIDQLNKLKTKLDEANRTIND-LDVARKKLIIEN----SDLVRQLSKVTADARMWKIKYE 150 (156)
Q Consensus 84 ~k~~~~-------~~el~~q~~~l~r~k~~lee~~r~~~e-l~~~~~~l~~E~----~el~r~l~e~e~~~~~~r~k~e 150 (156)
.|.... +..-.+.++-|+..|..++.+...--+ |...+...+.+. .++++.=.+--.+.+..|.+|+
T Consensus 442 nksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~le 520 (527)
T PF15066_consen 442 NKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLE 520 (527)
T ss_pred hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 343332 222333445555555444433321111 222222222222 2555555555566777777776
No 93
>KOG0963|consensus
Probab=68.13 E-value=94 Score=28.12 Aligned_cols=121 Identities=20% Similarity=0.260 Sum_probs=63.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHH
Q psy16513 22 AEKQRADLARELEELGERLEEAGGATSAQIELNKK-----------REAEMSKLRRDLEEANIQHESTLANLRKKHNDAV 90 (156)
Q Consensus 22 ~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk-----------~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~ 90 (156)
++.+..+|..++.++...+...-+.......+..+ .+...+.....++......+..+.+.....+.++
T Consensus 119 ~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~ 198 (629)
T KOG0963|consen 119 ASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQL 198 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677777777777665543322222212111 2222334444555555555555556666666677
Q ss_pred HHHHHHHHHHHHHHH----HhHHHHh------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 91 SEMGEQIDQLNKLKT----KLDEANR------------------TINDLDVARKKLIIENSDLVRQLSKVTADA 142 (156)
Q Consensus 91 ~el~~q~~~l~r~k~----~lee~~r------------------~~~el~~~~~~l~~E~~el~r~l~e~e~~~ 142 (156)
..+...+..|++.-- ++.+... .+....+.+.-++.+|..|..++..+++..
T Consensus 199 ~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~ 272 (629)
T KOG0963|consen 199 EELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSK 272 (629)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 777777766643332 2222222 122244455566677777777777776654
No 94
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=67.66 E-value=1.7 Score=39.46 Aligned_cols=11 Identities=27% Similarity=0.622 Sum_probs=0.0
Q ss_pred HhHHHHhhHHH
Q psy16513 106 KLDEANRTIND 116 (156)
Q Consensus 106 ~lee~~r~~~e 116 (156)
+++.+++.+.+
T Consensus 364 qle~~k~qi~e 374 (713)
T PF05622_consen 364 QLEEYKKQIQE 374 (713)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 44444443333
No 95
>KOG0933|consensus
Probab=65.91 E-value=1.3e+02 Score=29.00 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy16513 31 RELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHE 76 (156)
Q Consensus 31 ~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e 76 (156)
+++.++..+|..+-.....+...+++++.++..+.-..++....+.
T Consensus 787 ~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~ 832 (1174)
T KOG0933|consen 787 RRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEIS 832 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444333333344444556667777777766666665555
No 96
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=65.56 E-value=39 Score=25.48 Aligned_cols=39 Identities=13% Similarity=0.262 Sum_probs=27.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHH
Q psy16513 16 RQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELN 54 (156)
Q Consensus 16 ~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~ 54 (156)
.+.+..++...++|..|+.+|..+++.+.+.......++
T Consensus 112 ~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~Lr 150 (171)
T PF04799_consen 112 ARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLR 150 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888888866654444433333
No 97
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=65.49 E-value=60 Score=24.94 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 29 LARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEA 71 (156)
Q Consensus 29 l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~ 71 (156)
+..|+++|+.-+-.+..........++..|.+-..|-..++..
T Consensus 65 l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~L 107 (193)
T PF14662_consen 65 LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETL 107 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555443333222222223344444444443333333
No 98
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=64.00 E-value=63 Score=24.66 Aligned_cols=50 Identities=18% Similarity=0.154 Sum_probs=20.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 22 AEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEA 71 (156)
Q Consensus 22 ~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~ 71 (156)
++-.-+++...+..+...+-................+.....|.......
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~A 77 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELA 77 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443333333333333444444444444433
No 99
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=63.52 E-value=1.1e+02 Score=27.14 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=20.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHH
Q psy16513 79 LANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLIIENS 129 (156)
Q Consensus 79 ~~~~k~k~~~~~~el~~q~~~l~r~k~~lee~~r~~~el~~~~~~l~~E~~ 129 (156)
+..++.|+...++++....+.+...-..++.....+..+...+..+..++.
T Consensus 313 l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~ 363 (563)
T TIGR00634 313 IKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELD 363 (563)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444333332333333333333333333333333
No 100
>KOG3032|consensus
Probab=63.15 E-value=55 Score=26.03 Aligned_cols=88 Identities=14% Similarity=0.273 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy16513 57 REAEMSKLRRDLEEANIQHESTLANL--RKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLIIENSDLVRQ 134 (156)
Q Consensus 57 ~E~el~~l~~~lee~~~~~e~~~~~~--k~k~~~~~~el~~q~~~l~r~k~~lee~~r~~~el~~~~~~l~~E~~el~r~ 134 (156)
.+.++.+++..+.+....+.+-+.+. -..+.-+++++.+|++... +++.++++..++-++++..... .++...
T Consensus 165 ~d~Ey~rfqkeI~~~~tesd~iveEeeed~~l~reieeidEQi~~~k----kvekl~~qK~ellnkkRe~~~k-~ev~ke 239 (264)
T KOG3032|consen 165 IDDEYKRFQKEIQDDLTESDSIVEEEEEDAALTREIEEIDEQISYKK----KVEKLKRQKMELLNKKREKTSK-GEVKKE 239 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhcccc-cccCcc
Confidence 44455555554444443333212111 1123336888889988764 4556777777766665554433 334333
Q ss_pred HHHHHH-------HHHHHHHHh
Q psy16513 135 LSKVTA-------DARMWKIKY 149 (156)
Q Consensus 135 l~e~e~-------~~~~~r~k~ 149 (156)
.++... ...+||+|-
T Consensus 240 ~eesddDgeddDl~a~DWRaKn 261 (264)
T KOG3032|consen 240 EEESDDDGEDDDLSAVDWRAKN 261 (264)
T ss_pred cccCccccchhhhhhhhhhhhh
Confidence 333222 246999873
No 101
>KOG4074|consensus
Probab=62.69 E-value=88 Score=25.95 Aligned_cols=19 Identities=16% Similarity=0.441 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy16513 132 VRQLSKVTADARMWKIKYE 150 (156)
Q Consensus 132 ~r~l~e~e~~~~~~r~k~e 150 (156)
.-|++-.-.++--||.||=
T Consensus 204 ~Eq~erl~iqcdVWrsKFL 222 (383)
T KOG4074|consen 204 DEQSERLRIQCDVWRSKFL 222 (383)
T ss_pred HHHHHHHhhHHHHHHHHHH
Confidence 3456666677788888874
No 102
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=62.32 E-value=62 Score=24.02 Aligned_cols=32 Identities=9% Similarity=0.247 Sum_probs=15.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 109 EANRTINDLDVARKKLIIENSDLVRQLSKVTA 140 (156)
Q Consensus 109 e~~r~~~el~~~~~~l~~E~~el~r~l~e~e~ 140 (156)
+.......+......+......+...+.+.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (191)
T PF04156_consen 155 DSREEVQELRSQLERLQENLQQLEEKIQELQE 186 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555544444443
No 103
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=60.66 E-value=61 Score=23.35 Aligned_cols=69 Identities=17% Similarity=0.251 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEA 71 (156)
Q Consensus 3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~ 71 (156)
-+|++|--.|-.++.++-++.-+-.+...=.+.|..+|+.+.+-+...+++-.+...-+.-|+..+.+-
T Consensus 6 P~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqek 74 (134)
T PF15233_consen 6 PQIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQLHCQEK 74 (134)
T ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777778888888999999999999999999999999999988888888777776666666555543
No 104
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=60.62 E-value=2.8 Score=38.11 Aligned_cols=7 Identities=29% Similarity=0.539 Sum_probs=0.0
Q ss_pred HHHHHHH
Q psy16513 89 AVSEMGE 95 (156)
Q Consensus 89 ~~~el~~ 95 (156)
.+..+..
T Consensus 299 ElD~lR~ 305 (713)
T PF05622_consen 299 ELDELRE 305 (713)
T ss_dssp -------
T ss_pred hHHHHHH
Confidence 3333333
No 105
>PLN03188 kinesin-12 family protein; Provisional
Probab=59.70 E-value=1.2e+02 Score=29.81 Aligned_cols=45 Identities=29% Similarity=0.325 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHH
Q psy16513 7 ELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELN 54 (156)
Q Consensus 7 EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~ 54 (156)
-|.-+|. .+|.--||+|+-|..|.-.|+.+|.++..+.++.-++-
T Consensus 1159 alaae~s---~l~~ereker~~~~~enk~l~~qlrdtaeav~aagell 1203 (1320)
T PLN03188 1159 ALAAEIS---ALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELL 1203 (1320)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHH
Confidence 3444443 44556688999999999999999988887777766554
No 106
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=59.11 E-value=61 Score=22.90 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16513 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELG 37 (156)
Q Consensus 3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~ 37 (156)
..+..|..++.........++.....+..++....
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~ 37 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDAEEQLQSLREDLESQA 37 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444444444443333333333333
No 107
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=58.63 E-value=45 Score=24.51 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHHH
Q psy16513 86 HNDAVSEMGEQIDQL 100 (156)
Q Consensus 86 ~~~~~~el~~q~~~l 100 (156)
+..++.+.+.++..|
T Consensus 32 ~k~ql~~~d~~i~~L 46 (155)
T PF06810_consen 32 LKTQLKEADKQIKDL 46 (155)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444444
No 108
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=58.40 E-value=68 Score=23.21 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=23.0
Q ss_pred HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 106 KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADA 142 (156)
Q Consensus 106 ~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~ 142 (156)
++.++.-....+...+..|..+.+.+..-++......
T Consensus 102 kl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 102 KLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5555555555666666777777666666666655543
No 109
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=58.29 E-value=91 Score=24.62 Aligned_cols=20 Identities=25% Similarity=0.165 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16513 120 ARKKLIIENSDLVRQLSKVT 139 (156)
Q Consensus 120 ~~~~l~~E~~el~r~l~e~e 139 (156)
.......|..+....|+...
T Consensus 147 ~~~~Ae~El~~A~~LL~~v~ 166 (264)
T PF06008_consen 147 QRQNAEDELKEAEDLLSRVQ 166 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444443343333
No 110
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=57.92 E-value=90 Score=24.47 Aligned_cols=50 Identities=18% Similarity=0.285 Sum_probs=23.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy16513 20 AKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHE 76 (156)
Q Consensus 20 ~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e 76 (156)
.++..++..|..++..+..+++.+.. -+++++..+...+..+++......
T Consensus 45 d~~~~e~~~L~~e~~~l~~e~e~L~~-------~~~~l~~~v~~q~~el~~L~~qi~ 94 (251)
T PF11932_consen 45 DQWDDEKQELLAEYRQLEREIENLEV-------YNEQLERQVASQEQELASLEQQIE 94 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555544443 333344444444444444444444
No 111
>KOG4643|consensus
Probab=57.53 E-value=1.9e+02 Score=28.03 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=39.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy16513 17 QSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHE 76 (156)
Q Consensus 17 ~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e 76 (156)
.--..+++...-|+.+.+.|...+-.+....+..+.+-|.+-.+..++............
T Consensus 401 SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~ 460 (1195)
T KOG4643|consen 401 SKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLS 460 (1195)
T ss_pred HHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344456666677788888888877777777777777777766666666555554444443
No 112
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=57.22 E-value=94 Score=24.46 Aligned_cols=11 Identities=9% Similarity=0.380 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q psy16513 89 AVSEMGEQIDQ 99 (156)
Q Consensus 89 ~~~el~~q~~~ 99 (156)
++.-|-++++.
T Consensus 89 ey~~Lk~~in~ 99 (230)
T PF10146_consen 89 EYKPLKDEINE 99 (230)
T ss_pred HHHHHHHHHHH
Confidence 33334444433
No 113
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=56.69 E-value=62 Score=23.25 Aligned_cols=29 Identities=24% Similarity=0.552 Sum_probs=21.8
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Q psy16513 122 KKLIIEN-SDLVRQLSKVTADARMWKIKYE 150 (156)
Q Consensus 122 ~~l~~E~-~el~r~l~e~e~~~~~~r~k~e 150 (156)
++..-|+ -.|+-.|..++.+++.||..|+
T Consensus 73 AkY~lENky~L~~tL~~LtkEVn~Wr~ewd 102 (132)
T PF09432_consen 73 AKYSLENKYSLQDTLNQLTKEVNYWRKEWD 102 (132)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333343 3778889999999999999986
No 114
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=56.22 E-value=1.5e+02 Score=26.55 Aligned_cols=139 Identities=26% Similarity=0.287 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH------HHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy16513 10 EEVEVERQSRAKAEKQRADLARELEELGE------RLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLR 83 (156)
Q Consensus 10 e~le~e~~~r~k~EK~k~~l~~Ele~l~~------~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k 83 (156)
+.|..+++.=++.+|-...+..-++-|.. -+..+..+... ..-....+..|..+...+++.-..+++....++
T Consensus 208 e~L~~e~~rLsn~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~-l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~ 286 (557)
T COG0497 208 EELEEERKRLSNSEKLAEAIQNALELLSGEDDTVSALSLLGRALEA-LEDLSEYDGKLSELAELLEEALYELEEASEELR 286 (557)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH-HHHhhccChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666777766666655555542 11111111111 111122445566666666666666666555555
Q ss_pred HhhHH------HHHHHHHHHHHHHHHHHH-----------hHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 84 KKHND------AVSEMGEQIDQLNKLKTK-----------LDEANRT---INDLDVARKKLIIENSDLVRQLSKVTADAR 143 (156)
Q Consensus 84 ~k~~~------~~~el~~q~~~l~r~k~~-----------lee~~r~---~~el~~~~~~l~~E~~el~r~l~e~e~~~~ 143 (156)
..+.. .++++.+.+..|...+-+ .+.+... +......+..|+.+...+..++.++-..++
T Consensus 287 ~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls 366 (557)
T COG0497 287 AYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALS 366 (557)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55543 466666666655555541 1111111 122233455555555666666666666666
Q ss_pred HHHHHh
Q psy16513 144 MWKIKY 149 (156)
Q Consensus 144 ~~r~k~ 149 (156)
..|.+|
T Consensus 367 ~~R~~~ 372 (557)
T COG0497 367 AIRKKA 372 (557)
T ss_pred HHHHHH
Confidence 666665
No 115
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=56.21 E-value=1.3e+02 Score=25.90 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16513 129 SDLVRQLSKVTADARMW 145 (156)
Q Consensus 129 ~el~r~l~e~e~~~~~~ 145 (156)
..|...+..++.+.+.-
T Consensus 234 ~~L~~~Ias~e~~aA~~ 250 (420)
T COG4942 234 SRLKNEIASAEAAAAKA 250 (420)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555444433
No 116
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=56.07 E-value=86 Score=23.64 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=17.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Q psy16513 111 NRTINDLDVARKKLIIENSDLVRQLSKVTAD----ARMWKI 147 (156)
Q Consensus 111 ~r~~~el~~~~~~l~~E~~el~r~l~e~e~~----~~~~r~ 147 (156)
.+.+..+...+..|+-+++-+...+.+++.+ |..|=.
T Consensus 143 ~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 143 NKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444 566733
No 117
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=55.90 E-value=45 Score=20.34 Aligned_cols=44 Identities=16% Similarity=0.319 Sum_probs=33.2
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513 107 LDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYE 150 (156)
Q Consensus 107 lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e 150 (156)
++++...+..+...+..++.++.++...+++.+.-+...=.=||
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566667777888888888888888888888877766666
No 118
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=55.28 E-value=1.2e+02 Score=25.05 Aligned_cols=40 Identities=30% Similarity=0.341 Sum_probs=23.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhh
Q psy16513 111 NRTINDLDVARKKLIIENSDLVRQLSKV-------TADARMWKIKYE 150 (156)
Q Consensus 111 ~r~~~el~~~~~~l~~E~~el~r~l~e~-------e~~~~~~r~k~e 150 (156)
-..+.++....+.+-.|+.+|+..|... .+++...+-||.
T Consensus 240 lsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~ 286 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYA 286 (306)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666555443 344666666664
No 119
>PRK10698 phage shock protein PspA; Provisional
Probab=55.17 E-value=98 Score=24.05 Aligned_cols=17 Identities=12% Similarity=0.049 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16513 55 KKREAEMSKLRRDLEEA 71 (156)
Q Consensus 55 kk~E~el~~l~~~lee~ 71 (156)
+..+.++..+....+..
T Consensus 55 k~~er~~~~~~~~~~~~ 71 (222)
T PRK10698 55 KQLTRRIEQAEAQQVEW 71 (222)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33343443333333333
No 120
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=54.36 E-value=1.6e+02 Score=26.12 Aligned_cols=74 Identities=12% Similarity=0.190 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHH
Q psy16513 14 VERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHND 88 (156)
Q Consensus 14 ~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~ 88 (156)
.++..+...++.-..+-.+++.+.++.+.+-..-....++..+.+. +.+-.+.+....-.++..+..|+.|...
T Consensus 254 ~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~-l~ek~r~l~~D~nk~~~~~~~mk~K~~~ 327 (622)
T COG5185 254 SEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKT-LREKWRALKSDSNKYENYVNAMKQKSQE 327 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 3455667777888888888888888877775544444444433322 1222222222223344456667766654
No 121
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=53.99 E-value=49 Score=20.18 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy16513 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERL 40 (156)
Q Consensus 5 i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~l 40 (156)
|.+|+..+......-..+.++-.+++..++.+...+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666665444444444444444444444444433
No 122
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=53.85 E-value=1.5e+02 Score=25.73 Aligned_cols=147 Identities=23% Similarity=0.202 Sum_probs=80.4
Q ss_pred HHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCcc-------------HHHHHHHHHHHHHHHHHHH
Q psy16513 5 IYELEEEVE-----VERQSRAKAEKQRADLARELEELGERLEEAGGAT-------------SAQIELNKKREAEMSKLRR 66 (156)
Q Consensus 5 i~EL~e~le-----~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~-------------~~~~~~~kk~E~el~~l~~ 66 (156)
+..+.++++ -...++.-.|+........++.+..+|.....-+ .....+....+..+..+..
T Consensus 251 l~~l~~~~d~~~~~~~~~lr~~~E~~~~ec~~~ve~~k~~L~~~~~~~~eea~~lv~~~~~plv~~~q~~~e~~le~l~~ 330 (473)
T PF14643_consen 251 LNALNEQIDEYHQQCMEKLRALYEKICQECLALVEKLKQELLDWKACTEEEAEELVNPEFLPLVGELQSEFEEELEKLDK 330 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 3456777888888999999999999988866543 2223333445666666666
Q ss_pred HHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-----------Hh----HHHHhhHHHHHHHHHHHHHHHHHH
Q psy16513 67 DLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKT-----------KL----DEANRTINDLDVARKKLIIENSDL 131 (156)
Q Consensus 67 ~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~r~k~-----------~l----ee~~r~~~el~~~~~~l~~E~~el 131 (156)
.+++.....+..+..+.+=....+.-....-..+..... +. .+....+...-..++..-++ ..|
T Consensus 331 ~~E~~a~~~~~~~~~L~~f~~~~~~lwd~h~~~l~~~e~~l~~~l~~~r~~~~~~~q~~E~~Ld~~~d~lRq~s~e-e~L 409 (473)
T PF14643_consen 331 SFEELAKQTEAQSEDLFKFFQEAAQLWDEHRKKLSKQEEELEKRLEQCREKHDQENQEKEAKLDIALDRLRQASSE-EKL 409 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCH-HHH
Confidence 666666665543333332222211111111111111111 11 11222222233333333332 688
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q psy16513 132 VRQLSKVTADARMWKIKYETN 152 (156)
Q Consensus 132 ~r~l~e~e~~~~~~r~k~e~~ 152 (156)
...+.++..-+.+.++.|+.-
T Consensus 410 ~~~l~~~~~~Ld~Ie~~Y~~f 430 (473)
T PF14643_consen 410 KEHLEKALDLLDQIEEEYEDF 430 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999853
No 123
>smart00338 BRLZ basic region leucin zipper.
Probab=53.73 E-value=49 Score=20.19 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16513 116 DLDVARKKLIIENSDLVRQLSKVTADARMWKIKY 149 (156)
Q Consensus 116 el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~ 149 (156)
+|...+..|..++..|...+..+..++..++..+
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555566666666666666555443
No 124
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=53.29 E-value=1.2e+02 Score=24.54 Aligned_cols=67 Identities=13% Similarity=0.239 Sum_probs=46.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 79 LANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMW 145 (156)
Q Consensus 79 ~~~~k~k~~~~~~el~~q~~~l~r~k~~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~ 145 (156)
.....+++...-.++....+-|.+....+.+....+.+....+.+|..+...+...+.-+.+.|-..
T Consensus 195 ke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 195 KEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555556666666666666667777777888888888888888888888777777766543
No 125
>PRK11281 hypothetical protein; Provisional
Probab=51.45 E-value=2.4e+02 Score=27.52 Aligned_cols=35 Identities=6% Similarity=0.022 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 112 RTINDLDVARKKLIIENSDLVRQLSKVTADARMWK 146 (156)
Q Consensus 112 r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r 146 (156)
..+.+.++.+..++..-...+..+.++...+++.+
T Consensus 142 ~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~ 176 (1113)
T PRK11281 142 NDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIR 176 (1113)
T ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333344333344443
No 126
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=51.38 E-value=1.2e+02 Score=25.11 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHhhH
Q psy16513 57 REAEMSKLRRDLEEANIQHE 76 (156)
Q Consensus 57 ~E~el~~l~~~lee~~~~~e 76 (156)
....+..+...+......++
T Consensus 240 ~~~~l~~l~~~l~~l~~~~~ 259 (344)
T PF12777_consen 240 KQAELAELEEKLAALQKEYE 259 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443
No 127
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=51.12 E-value=1.4e+02 Score=24.47 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy16513 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERL 40 (156)
Q Consensus 3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~l 40 (156)
..|.+|+-++|.+++ ++..=.--+|.|-+-|
T Consensus 18 qKIqelE~QldkLkK-------E~qQrQfQleSlEAaL 48 (307)
T PF10481_consen 18 QKIQELEQQLDKLKK-------ERQQRQFQLESLEAAL 48 (307)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHH
Confidence 478999999985544 4444444445544433
No 128
>PRK11546 zraP zinc resistance protein; Provisional
Probab=50.58 E-value=97 Score=22.64 Aligned_cols=68 Identities=16% Similarity=0.141 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy16513 10 EEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHES 77 (156)
Q Consensus 10 e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~ 77 (156)
|+-.....+..+--..-..|...+-.-..+|..+......=....+++-.++..|+.+|.+....+..
T Consensus 47 EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~ 114 (143)
T PRK11546 47 EQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDI 114 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555666666666667777777776666544444445566788888888888877766554
No 129
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=50.57 E-value=1.2e+02 Score=23.74 Aligned_cols=27 Identities=15% Similarity=0.355 Sum_probs=12.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy16513 79 LANLRKKHNDAVSEMGEQIDQLNKLKT 105 (156)
Q Consensus 79 ~~~~k~k~~~~~~el~~q~~~l~r~k~ 105 (156)
+..........+.++..+++++...+.
T Consensus 75 l~~~v~~q~~el~~L~~qi~~~~~~~~ 101 (251)
T PF11932_consen 75 LERQVASQEQELASLEQQIEQIEETRQ 101 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444455555555555444443
No 130
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=50.46 E-value=88 Score=22.09 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16513 120 ARKKLIIENSDLVRQLSKVTAD 141 (156)
Q Consensus 120 ~~~~l~~E~~el~r~l~e~e~~ 141 (156)
....|..++.++...+.+++.+
T Consensus 99 qk~~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 99 QKEQLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 131
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=50.28 E-value=1.4e+02 Score=24.55 Aligned_cols=24 Identities=8% Similarity=0.052 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy16513 126 IENSDLVRQLSKVTADARMWKIKY 149 (156)
Q Consensus 126 ~E~~el~r~l~e~e~~~~~~r~k~ 149 (156)
.+...+...+..++..+..++...
T Consensus 246 ~~l~~~~~~l~~~~~~l~~~~~~l 269 (423)
T TIGR01843 246 EELTEAQARLAELRERLNKARDRL 269 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666665554433
No 132
>KOG0999|consensus
Probab=50.16 E-value=2e+02 Score=26.07 Aligned_cols=36 Identities=17% Similarity=0.115 Sum_probs=20.1
Q ss_pred HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 106 KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTAD 141 (156)
Q Consensus 106 ~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~ 141 (156)
+-..+-+.+-+|.+.+.++++++.+.+...+.....
T Consensus 101 kE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~ 136 (772)
T KOG0999|consen 101 KEEYYLQKILELENELKQLRQELTNVQEENERLEKV 136 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666666666665555544444433
No 133
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=50.12 E-value=1.1e+02 Score=23.17 Aligned_cols=44 Identities=14% Similarity=0.158 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCcc
Q psy16513 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGAT 47 (156)
Q Consensus 4 ~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~ 47 (156)
-|..|.+.|....++-.++=|...++...+.++...+..++..-
T Consensus 22 yi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E 65 (200)
T cd07624 22 YLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASE 65 (200)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46778888888888888888888888888888888887765443
No 134
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=50.05 E-value=2.2e+02 Score=26.61 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16513 114 INDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYET 151 (156)
Q Consensus 114 ~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e~ 151 (156)
..-|+.++.-++.|+..|-..|..-+++++-.|..|--
T Consensus 260 ~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ 297 (769)
T PF05911_consen 260 SEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAK 297 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34488899999999999999999999999999999953
No 135
>KOG0999|consensus
Probab=49.88 E-value=2e+02 Score=26.05 Aligned_cols=74 Identities=27% Similarity=0.401 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH----------HHHHHHH
Q psy16513 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRR----------DLEEANI 73 (156)
Q Consensus 4 ~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~----------~lee~~~ 73 (156)
+|-+|+-+|...+. - -.....|.+.|.....++....++.+.-+.++-+++.+++. .|++.+.
T Consensus 108 kI~eleneLKq~r~---e----l~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENI 180 (772)
T KOG0999|consen 108 KILELENELKQLRQ---E----LTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENI 180 (772)
T ss_pred HHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45666666643332 2 22334556666666666677777777777777777777663 4566666
Q ss_pred hhHHHHHHHHH
Q psy16513 74 QHESTLANLRK 84 (156)
Q Consensus 74 ~~e~~~~~~k~ 84 (156)
.+...++.+|.
T Consensus 181 sLQKqVs~LR~ 191 (772)
T KOG0999|consen 181 SLQKQVSNLRQ 191 (772)
T ss_pred hHHHHHHHHhh
Confidence 66655665543
No 136
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=49.62 E-value=1.3e+02 Score=23.90 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=18.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHH
Q psy16513 79 LANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLIIEN 128 (156)
Q Consensus 79 ~~~~k~k~~~~~~el~~q~~~l~r~k~~lee~~r~~~el~~~~~~l~~E~ 128 (156)
+...|.|.-..+.+|++++..+ ...+..|...+..|+.|+
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~----------~~~~~~L~~Ev~~L~~DN 123 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQ----------QQTISSLRREVESLRADN 123 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 3444444444555555554332 223344555555555555
No 137
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=49.48 E-value=1.7e+02 Score=25.09 Aligned_cols=88 Identities=14% Similarity=0.223 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHH--------------------------Hhh
Q psy16513 60 EMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEA--------------------------NRT 113 (156)
Q Consensus 60 el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~r~k~~lee~--------------------------~r~ 113 (156)
++..+++.++..-..+..-+..+-..+...++.......-|+|.|..++.. .|+
T Consensus 264 el~siRr~Cd~lP~~m~tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ 343 (442)
T PF06637_consen 264 ELESIRRTCDHLPKIMTTKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQ 343 (442)
T ss_pred hHHHHHHHHhhchHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666655555555555555555555555555555565555411110 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 114 INDLDVARKKLIIENSDLVRQLSKVTADARMWKI 147 (156)
Q Consensus 114 ~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~ 147 (156)
-.-.-..+..|+.|.+.|.+.|++..-++.+.+.
T Consensus 344 ~qlaLEEKaaLrkerd~L~keLeekkreleql~~ 377 (442)
T PF06637_consen 344 TQLALEEKAALRKERDSLAKELEEKKRELEQLKM 377 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222344555557888888888777777644
No 138
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=49.33 E-value=87 Score=21.75 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=5.6
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy16513 25 QRADLARELEELGERLE 41 (156)
Q Consensus 25 ~k~~l~~Ele~l~~~le 41 (156)
.++++..-|..|...|+
T Consensus 10 s~~el~n~La~Le~slE 26 (107)
T PF09304_consen 10 SQNELQNRLASLERSLE 26 (107)
T ss_dssp ----HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 139
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=48.97 E-value=1.5e+02 Score=24.34 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=17.2
Q ss_pred HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 106 KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADAR 143 (156)
Q Consensus 106 ~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~ 143 (156)
..+++...+.++......+..+...++..|-+++..+.
T Consensus 208 eade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik 245 (294)
T COG1340 208 EADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIK 245 (294)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444433
No 140
>KOG0018|consensus
Probab=48.74 E-value=2.7e+02 Score=27.15 Aligned_cols=35 Identities=17% Similarity=0.123 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16513 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELG 37 (156)
Q Consensus 3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~ 37 (156)
+.|..+.++|..++....++...+..-..++....
T Consensus 227 ~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k 261 (1141)
T KOG0018|consen 227 ACIEKANDELSRLNAEIPKLKERMDKKEREIRVRK 261 (1141)
T ss_pred hhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHH
Confidence 45666666666666655555555554444444444
No 141
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=48.73 E-value=1.2e+02 Score=23.36 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=12.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhcC
Q psy16513 22 AEKQRADLARELEELGERLEEAGG 45 (156)
Q Consensus 22 ~EK~k~~l~~Ele~l~~~le~~~~ 45 (156)
++.....+..++..+..+++++..
T Consensus 141 Le~~~~~le~~l~~~k~~ie~vN~ 164 (221)
T PF05700_consen 141 LEAMLKRLEKELAKLKKEIEEVNR 164 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555543
No 142
>PRK10884 SH3 domain-containing protein; Provisional
Probab=48.72 E-value=1.2e+02 Score=23.33 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhH
Q psy16513 55 KKREAEMSKLRRDLEEANIQHE 76 (156)
Q Consensus 55 kk~E~el~~l~~~lee~~~~~e 76 (156)
.+++.++.+++.++.+......
T Consensus 96 p~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 4577777777777776654443
No 143
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=48.03 E-value=57 Score=27.14 Aligned_cols=88 Identities=10% Similarity=0.217 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HhHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy16513 57 REAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKT----KLDEANRTINDLDVARKKLIIENSDLV 132 (156)
Q Consensus 57 ~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~r~k~----~lee~~r~~~el~~~~~~l~~E~~el~ 132 (156)
+...+..+...+.+....+.. +..-...++..+..+...+..++-.-. .+.+++..+..+...+.+|+.+.....
T Consensus 61 Lss~L~~l~~sl~~~~s~L~s-LsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~a 139 (326)
T PF04582_consen 61 LSSDLQDLASSLADMTSELNS-LSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQA 139 (326)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhc
Confidence 344444444444444444442 444444444455555555543322111 444555555556666666666665555
Q ss_pred HHHHHHHHHHHHH
Q psy16513 133 RQLSKVTADARMW 145 (156)
Q Consensus 133 r~l~e~e~~~~~~ 145 (156)
-++..++..+...
T Consensus 140 L~ItdLe~RV~~L 152 (326)
T PF04582_consen 140 LNITDLESRVKAL 152 (326)
T ss_dssp HHHHHHHHHHHHH
T ss_pred chHhhHHHHHHHH
Confidence 5555555555443
No 144
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=47.20 E-value=56 Score=18.91 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHH
Q psy16513 57 REAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMG 94 (156)
Q Consensus 57 ~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~ 94 (156)
+|..+.-|+..++......+. +..-+.++..++..+.
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~-L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDS-LKKENEKLRAEVQELK 39 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 455555555555555555553 4333334444444433
No 145
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=46.80 E-value=1e+02 Score=21.94 Aligned_cols=19 Identities=11% Similarity=0.457 Sum_probs=8.2
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q psy16513 22 AEKQRADLARELEELGERL 40 (156)
Q Consensus 22 ~EK~k~~l~~Ele~l~~~l 40 (156)
+..+|.+|...++.|-..|
T Consensus 59 l~~tKkhLsqRId~vd~kl 77 (126)
T PF07889_consen 59 LSSTKKHLSQRIDRVDDKL 77 (126)
T ss_pred HHHHHHHHHHHHHHHHhhH
Confidence 3344444444444444444
No 146
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=46.80 E-value=2.3e+02 Score=25.82 Aligned_cols=7 Identities=43% Similarity=0.956 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy16513 63 KLRRDLE 69 (156)
Q Consensus 63 ~l~~~le 69 (156)
.|.++|.
T Consensus 485 ~L~~~L~ 491 (652)
T COG2433 485 RLEKELE 491 (652)
T ss_pred HHHHHHH
Confidence 3333333
No 147
>KOG1103|consensus
Probab=46.61 E-value=1.8e+02 Score=24.71 Aligned_cols=19 Identities=0% Similarity=0.195 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy16513 131 LVRQLSKVTADARMWKIKY 149 (156)
Q Consensus 131 l~r~l~e~e~~~~~~r~k~ 149 (156)
+.+++++..-+...+|++.
T Consensus 243 vek~i~EfdiEre~LRAel 261 (561)
T KOG1103|consen 243 VEKLIEEFDIEREFLRAEL 261 (561)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 148
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=46.56 E-value=2e+02 Score=25.15 Aligned_cols=45 Identities=33% Similarity=0.322 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHH
Q psy16513 7 ELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELN 54 (156)
Q Consensus 7 EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~ 54 (156)
-|.-+|.+ .|.--||++.-|..|.-.|..+|.++.-+.++.-++-
T Consensus 389 slaaEiSa---lr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEll 433 (488)
T PF06548_consen 389 SLAAEISA---LRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELL 433 (488)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 34444443 3445688899999999999999988887777665553
No 149
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=46.33 E-value=1.1e+02 Score=22.17 Aligned_cols=6 Identities=67% Similarity=0.656 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy16513 31 RELEEL 36 (156)
Q Consensus 31 ~Ele~l 36 (156)
++|+.+
T Consensus 31 reLe~~ 36 (140)
T PF10473_consen 31 RELEMS 36 (140)
T ss_pred HHHHHH
Confidence 333333
No 150
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=46.23 E-value=97 Score=21.38 Aligned_cols=52 Identities=25% Similarity=0.393 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 86 HNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLIIENSDLVRQLSKVTA 140 (156)
Q Consensus 86 ~~~~~~el~~q~~~l~r~k~~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~ 140 (156)
+.+.+..++.++..+. ..+..++..+.++...-..|.-|+..|...|.+.+.
T Consensus 6 l~~~l~~le~~l~~l~---~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLL---EELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455566666655431 255666777777888888888888888888877655
No 151
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=46.12 E-value=3.2e+02 Score=27.26 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcC
Q psy16513 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGG 45 (156)
Q Consensus 3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~ 45 (156)
.+|.+|...|..+...-..++-....+...+..|..+...+-+
T Consensus 742 ~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps 784 (1353)
T TIGR02680 742 RRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPS 784 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3566666666666666666666666666666666665555444
No 152
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=45.90 E-value=2.5e+02 Score=26.02 Aligned_cols=64 Identities=31% Similarity=0.378 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN 72 (156)
Q Consensus 2 ~~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~ 72 (156)
++.|..|.+-|-.+...-.+.+-.-.-+..||..-+++|++....+.. .+-++.+|+..|++-.
T Consensus 355 qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~-------ke~eleeL~~~L~e~q 418 (786)
T PF05483_consen 355 QTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNN-------KEVELEELKKILAEKQ 418 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhh-------hHHHHHHHHHHHHHHH
Confidence 456677777776666655566666777777777777777766533322 3334444554444444
No 153
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=45.85 E-value=2.5e+02 Score=26.04 Aligned_cols=47 Identities=30% Similarity=0.434 Sum_probs=38.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH
Q psy16513 20 AKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRR 66 (156)
Q Consensus 20 ~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~ 66 (156)
..+|++|..|..-|.+...+|+.+.+.-+.+.+....+-..+..++.
T Consensus 275 ~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 275 LQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36788888999999999999999988888887777777777777776
No 154
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=45.78 E-value=95 Score=21.18 Aligned_cols=6 Identities=17% Similarity=0.407 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy16513 89 AVSEMG 94 (156)
Q Consensus 89 ~~~el~ 94 (156)
.+++|+
T Consensus 23 ElEeLT 28 (100)
T PF06428_consen 23 ELEELT 28 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 155
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=45.59 E-value=1.7e+02 Score=24.08 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 115 NDLDVARKKLIIENSDLVRQLSKVTAD 141 (156)
Q Consensus 115 ~el~~~~~~l~~E~~el~r~l~e~e~~ 141 (156)
..+...+.++++++-=|..||+++-..
T Consensus 217 es~eERL~QlqsEN~LLrQQLddA~~K 243 (305)
T PF14915_consen 217 ESLEERLSQLQSENMLLRQQLDDAHNK 243 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667778888887777777776544
No 156
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=45.38 E-value=76 Score=19.90 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy16513 12 VEVERQSRAKAEKQRADLARELEELGE 38 (156)
Q Consensus 12 le~e~~~r~k~EK~k~~l~~Ele~l~~ 38 (156)
++.+..+=..--+.-..|...+..|..
T Consensus 20 ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 20 IEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 157
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=45.11 E-value=1.3e+02 Score=22.69 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHH
Q psy16513 57 REAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQID 98 (156)
Q Consensus 57 ~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~ 98 (156)
++.++.+++..++..............++|.+.+.-|..+..
T Consensus 139 L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ 180 (189)
T PF10211_consen 139 LEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQ 180 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555444444444444555555544444433
No 158
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=45.00 E-value=1.9e+02 Score=24.38 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy16513 3 ARIYELEEEVEVERQSRAKAEKQRADL 29 (156)
Q Consensus 3 ~~i~EL~e~le~e~~~r~k~EK~k~~l 29 (156)
..+....++|-..+.+|.++++.-.+=
T Consensus 137 ~~l~~~~eQl~~lr~ar~~Le~Dl~dK 163 (384)
T PF03148_consen 137 RTLEQAEEQLRLLRAARYRLEKDLSDK 163 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666654443
No 159
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=44.95 E-value=1.7e+02 Score=23.95 Aligned_cols=17 Identities=24% Similarity=0.306 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16513 89 AVSEMGEQIDQLNKLKT 105 (156)
Q Consensus 89 ~~~el~~q~~~l~r~k~ 105 (156)
++.-...+++.|+|...
T Consensus 121 q~~~~~~~L~~L~ktNv 137 (314)
T PF04111_consen 121 QYEYASNQLDRLRKTNV 137 (314)
T ss_dssp HHHHHHHHHHCHHT--T
T ss_pred HHHHHHHHHHHHHhcCc
Confidence 44445555555555543
No 160
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=44.10 E-value=89 Score=20.37 Aligned_cols=35 Identities=14% Similarity=0.482 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHH
Q psy16513 60 EMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQID 98 (156)
Q Consensus 60 el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~ 98 (156)
++.-++..+-++..++. .+|.++-+.|.-|..+++
T Consensus 40 Em~~ir~~v~eLE~~h~----kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 40 EMQQIRQKVYELEQAHR----KMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 33444444444444433 245555555555555554
No 161
>KOG0994|consensus
Probab=43.60 E-value=3.5e+02 Score=27.02 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy16513 10 EEVEVERQSRAKAEKQRADLARELEELGERLEE 42 (156)
Q Consensus 10 e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~ 42 (156)
+.|+..+..-.-+|+.-......+.+|...|+.
T Consensus 1598 ~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~ 1630 (1758)
T KOG0994|consen 1598 QLLAKVQEETAAAEKLATSATQQLGELETRMEE 1630 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334433433444455444444444444444433
No 162
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=43.02 E-value=1.2e+02 Score=21.71 Aligned_cols=57 Identities=26% Similarity=0.398 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy16513 49 AQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKT 105 (156)
Q Consensus 49 ~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~r~k~ 105 (156)
+|.+++.++|.++.-++.+++....+...-+++.|.--.-.++.|..-+.+|-+.|.
T Consensus 12 tQ~E~N~QLekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~~~l~~llkqLEkeK~ 68 (129)
T PF15372_consen 12 TQLELNDQLEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSVESLNQLLKQLEKEKR 68 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 466788888888888888888888777765555554222245555555565555554
No 163
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=42.79 E-value=1.9e+02 Score=23.73 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=22.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 111 NRTINDLDVARKKLIIENSDLVRQLSKVTADARMW 145 (156)
Q Consensus 111 ~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~ 145 (156)
+..+..++....+|+.|+..|.+-.+..+..+..+
T Consensus 243 k~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m 277 (309)
T PF09728_consen 243 KKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEM 277 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33455577777777777777776666666664443
No 164
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=42.75 E-value=1.6e+02 Score=22.85 Aligned_cols=19 Identities=32% Similarity=0.326 Sum_probs=7.7
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q psy16513 21 KAEKQRADLARELEELGER 39 (156)
Q Consensus 21 k~EK~k~~l~~Ele~l~~~ 39 (156)
++|+..++|..-++.+..-
T Consensus 87 s~E~sfsdl~~ryek~K~v 105 (207)
T PF05010_consen 87 SLEKSFSDLHKRYEKQKEV 105 (207)
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 3444444444444443333
No 165
>KOG2391|consensus
Probab=42.21 E-value=2.1e+02 Score=24.10 Aligned_cols=60 Identities=17% Similarity=0.245 Sum_probs=29.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy16513 18 SRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHES 77 (156)
Q Consensus 18 ~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~ 77 (156)
+|.+++..-..+..+.++++..=+++....+......-.+|.++..++...+-.+.-.+.
T Consensus 219 lR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 219 LRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344455555555555555555555554444444444444555555555444444444443
No 166
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=41.86 E-value=51 Score=29.13 Aligned_cols=16 Identities=44% Similarity=0.669 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhhc
Q psy16513 137 KVTADARMWKIKYETN 152 (156)
Q Consensus 137 e~e~~~~~~r~k~e~~ 152 (156)
-+.++.++||.|||-+
T Consensus 59 ~~~~~~~~~~~~~~~~ 74 (508)
T PLN02935 59 LAQAEAAEWKRKYELE 74 (508)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4567789999999854
No 167
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=41.55 E-value=1.6e+02 Score=22.61 Aligned_cols=10 Identities=30% Similarity=0.385 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy16513 57 REAEMSKLRR 66 (156)
Q Consensus 57 ~E~el~~l~~ 66 (156)
.+.++..+..
T Consensus 57 ~e~~~~~~~~ 66 (219)
T TIGR02977 57 LERRVSRLEA 66 (219)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 168
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=41.18 E-value=1.3e+02 Score=21.42 Aligned_cols=46 Identities=22% Similarity=0.193 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy16513 53 LNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQL 100 (156)
Q Consensus 53 ~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l 100 (156)
-.+.+..++..+...+......+. ...++.++...+.+..+..+.+
T Consensus 70 ~~~~L~~~~~~k~~~~~~l~~~~s--~~~l~~~L~~~~~e~eeeSe~l 115 (150)
T PF07200_consen 70 ELKELESEYQEKEQQQDELSSNYS--PDALLARLQAAASEAEEESEEL 115 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666644444 4556666666666655555443
No 169
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=41.01 E-value=1.4e+02 Score=21.84 Aligned_cols=68 Identities=21% Similarity=0.370 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy16513 10 EEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLAN 81 (156)
Q Consensus 10 e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~ 81 (156)
.++...+..-..+..++..+...|.+...+|..+.+.....+++.++ +..|+..+......++..+..
T Consensus 13 k~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~----i~~lq~~~~~~~~~~e~~l~~ 80 (155)
T PF06810_consen 13 KDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQ----IEELQAKNKTAKEEYEAKLAQ 80 (155)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455566777777777777777777766666555443 334555555444444443333
No 170
>KOG4302|consensus
Probab=40.92 E-value=2.9e+02 Score=25.37 Aligned_cols=65 Identities=22% Similarity=0.234 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy16513 12 VEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHE 76 (156)
Q Consensus 12 le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e 76 (156)
+|.....++++...-.+...++.+|...|-+.........+.-..+..++..+...++.+.....
T Consensus 56 ve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~ 120 (660)
T KOG4302|consen 56 VEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKD 120 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777788888888888776544433331111222344444444444444443333
No 171
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=40.59 E-value=2.6e+02 Score=24.80 Aligned_cols=68 Identities=16% Similarity=0.277 Sum_probs=51.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHH
Q psy16513 21 KAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHND 88 (156)
Q Consensus 21 k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~ 88 (156)
.++..-..+..++..+...|+++.+.-..+..-...+...+..+++.+-.....+..++..+-.++..
T Consensus 105 ~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ 172 (560)
T PF06160_consen 105 EIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLEN 172 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHH
Confidence 34555666777777888888888777777666677788888889999888888888877777666654
No 172
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=40.53 E-value=1.3e+02 Score=21.22 Aligned_cols=40 Identities=13% Similarity=0.232 Sum_probs=26.1
Q ss_pred HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 106 KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMW 145 (156)
Q Consensus 106 ~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~ 145 (156)
.+..+++.+..+...+..+..++..+..++......+.+.
T Consensus 95 A~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 95 AIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666677777777777777777777776666655
No 173
>PRK02119 hypothetical protein; Provisional
Probab=40.49 E-value=97 Score=19.76 Aligned_cols=29 Identities=14% Similarity=0.145 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy16513 12 VEVERQSRAKAEKQRADLARELEELGERL 40 (156)
Q Consensus 12 le~e~~~r~k~EK~k~~l~~Ele~l~~~l 40 (156)
++.+..+=..--+.-..|.+.+..|..+|
T Consensus 25 ie~LN~~v~~Qq~~id~L~~ql~~L~~rl 53 (73)
T PRK02119 25 LEELNQALIEQQFVIDKMQVQLRYMANKL 53 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 174
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=40.35 E-value=1e+02 Score=20.06 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16513 113 TINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYET 151 (156)
Q Consensus 113 ~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e~ 151 (156)
...++.+++..--.|+..+...|-+++..-..+|.+||.
T Consensus 26 ~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEe 64 (79)
T PF08581_consen 26 QKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEE 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555556666666666666666666666664
No 175
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=40.24 E-value=48 Score=21.95 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy16513 2 QARIYELEEEVEVERQSRAKAEKQRA 27 (156)
Q Consensus 2 ~~~i~EL~e~le~e~~~r~k~EK~k~ 27 (156)
+..|..|+.+|..+..+|.-+|+...
T Consensus 14 eqeV~~Lq~~L~~E~~~r~aLe~al~ 39 (88)
T PF14389_consen 14 EQEVAELQKQLQEEQDLRRALEKALG 39 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34567777777777777777766533
No 176
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=40.22 E-value=52 Score=19.30 Aligned_cols=16 Identities=50% Similarity=0.621 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHH
Q psy16513 3 ARIYELEEEVEVERQS 18 (156)
Q Consensus 3 ~~i~EL~e~le~e~~~ 18 (156)
.++.||++++-.+|++
T Consensus 18 vrv~eLEeEV~~LrKI 33 (48)
T PF14077_consen 18 VRVSELEEEVRTLRKI 33 (48)
T ss_pred eeHHHHHHHHHHHHHH
Confidence 4688999999887763
No 177
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=40.15 E-value=1.1e+02 Score=20.35 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q psy16513 10 EEVEVERQSRAKAEKQRAD 28 (156)
Q Consensus 10 e~le~e~~~r~k~EK~k~~ 28 (156)
..+...+.....++.....
T Consensus 7 ~~l~~l~~~~~~~~~~~~~ 25 (127)
T smart00502 7 ELLTKLRKKAAELEDALKQ 25 (127)
T ss_pred HHHHHHHHhhHHHHHHHHH
Confidence 3333333333333333333
No 178
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=39.59 E-value=1.9e+02 Score=22.93 Aligned_cols=94 Identities=15% Similarity=0.112 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy16513 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRK 84 (156)
Q Consensus 5 i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~ 84 (156)
..++.+.++.+...=..++|....+..+..++...+.+.++.-..--..-..+...|..+...++.....+...+..+..
T Consensus 56 F~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~ 135 (243)
T cd07666 56 FTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGLSE 135 (243)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666555555444444433322211112225555666666666555454443444444
Q ss_pred hhHHHHHHHHHHHH
Q psy16513 85 KHNDAVSEMGEQID 98 (156)
Q Consensus 85 k~~~~~~el~~q~~ 98 (156)
.+...+.++-.-++
T Consensus 136 ~f~~~Lkeyv~y~~ 149 (243)
T cd07666 136 QLLPVIHEYVLYSE 149 (243)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 179
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=39.54 E-value=1.3e+02 Score=20.93 Aligned_cols=50 Identities=20% Similarity=0.325 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 86 HNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLIIENSDLVRQLSKV 138 (156)
Q Consensus 86 ~~~~~~el~~q~~~l~r~k~~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~ 138 (156)
+.+.+..+..++.++. ..+.+++..+.++...-..|+-|+..|.+.|.+.
T Consensus 6 lfd~l~~le~~l~~l~---~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 6 IFDALDDLEQNLGVLL---KELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666655442 2566677778888888888888888888888875
No 180
>KOG3156|consensus
Probab=39.49 E-value=1.9e+02 Score=22.71 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 122 KKLIIENSDLVRQLSKVTADARMWKI 147 (156)
Q Consensus 122 ~~l~~E~~el~r~l~e~e~~~~~~r~ 147 (156)
.++..|.+.|..+++....+..+|=+
T Consensus 177 ~kId~Ev~~lk~qi~s~K~qt~qw~~ 202 (220)
T KOG3156|consen 177 TKIDQEVTNLKTQIESVKTQTIQWLI 202 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999999999954
No 181
>PRK00736 hypothetical protein; Provisional
Probab=38.54 E-value=1e+02 Score=19.37 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy16513 9 EEEVEVERQSRAKAEKQRADLARELEELGERLE 41 (156)
Q Consensus 9 ~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le 41 (156)
++.++.++.+=..--+.-..|.+.+..|..+|.
T Consensus 18 e~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 18 EKTIEELSDQLAEQWKTVEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444443
No 182
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=38.47 E-value=92 Score=18.91 Aligned_cols=9 Identities=44% Similarity=0.789 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy16513 28 DLARELEEL 36 (156)
Q Consensus 28 ~l~~Ele~l 36 (156)
+|...+..|
T Consensus 30 ~Le~~~~~L 38 (64)
T PF00170_consen 30 ELEEKVEEL 38 (64)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 183
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=38.31 E-value=1.1e+02 Score=26.77 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 28 DLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLE 69 (156)
Q Consensus 28 ~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~le 69 (156)
+|...|+.|+.+++.+.......+...+.++.++..|+..++
T Consensus 80 ELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 80 QMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444444455444444444334444444556666666666653
No 184
>KOG0933|consensus
Probab=38.15 E-value=3.9e+02 Score=26.03 Aligned_cols=19 Identities=21% Similarity=0.459 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHhhH
Q psy16513 58 EAEMSKLRRDLEEANIQHE 76 (156)
Q Consensus 58 E~el~~l~~~lee~~~~~e 76 (156)
+..+.++...+.......+
T Consensus 786 e~rlkdl~keik~~k~~~e 804 (1174)
T KOG0933|consen 786 ERRLKDLEKEIKTAKQRAE 804 (1174)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 185
>PRK04325 hypothetical protein; Provisional
Probab=38.06 E-value=1.1e+02 Score=19.58 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q psy16513 57 REAEMSKLRRDL 68 (156)
Q Consensus 57 ~E~el~~l~~~l 68 (156)
+..++..|..++
T Consensus 42 L~~ql~~L~~rl 53 (74)
T PRK04325 42 LQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 186
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=37.81 E-value=1.7e+02 Score=21.71 Aligned_cols=27 Identities=26% Similarity=0.576 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy16513 129 SDLVRQLSKVTADARMWKIKYETNKPK 155 (156)
Q Consensus 129 ~el~r~l~e~e~~~~~~r~k~e~~~~~ 155 (156)
.++-+...-.++.+..|...||..+|.
T Consensus 122 ~~l~~~~g~~~~~m~~wh~~fe~~~p~ 148 (172)
T cd04790 122 VAILKAAGMDEADMRRWHIEFEKMEPE 148 (172)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHhCcH
Confidence 345555555667789999999988873
No 187
>KOG2010|consensus
Probab=37.76 E-value=2.4e+02 Score=23.68 Aligned_cols=59 Identities=25% Similarity=0.396 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy16513 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHE 76 (156)
Q Consensus 4 ~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e 76 (156)
.|.|+++-+...-..-+.++.+|+.|-=++|-|...|++. +.+|+.-.+.+++.+..++
T Consensus 120 kv~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~--------------eeqLaeS~Re~eek~kE~e 178 (405)
T KOG2010|consen 120 KVSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQ--------------EEQLAESYRENEEKSKELE 178 (405)
T ss_pred hhHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666777788888888888888777554 4555555555555555555
No 188
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=37.60 E-value=1.2e+02 Score=19.87 Aligned_cols=42 Identities=19% Similarity=0.316 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHh
Q psy16513 2 QARIYELEEEVEVERQSRAKAEKQ--RADLARELEELGERLEEA 43 (156)
Q Consensus 2 ~~~i~EL~e~le~e~~~r~k~EK~--k~~l~~Ele~l~~~le~~ 43 (156)
...|.+|.-+|+.++..-.++.+. +.-|..++..+..+|-..
T Consensus 2 ~~~i~eL~~Dl~El~~Ll~~a~R~rVk~~L~~ei~klE~eI~~~ 45 (79)
T PF09032_consen 2 SEQIEELQLDLEELKSLLEQAKRKRVKDLLTNEIRKLETEIKKL 45 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888888888888776666544 566666666666666444
No 189
>PRK00295 hypothetical protein; Provisional
Probab=37.50 E-value=1.1e+02 Score=19.29 Aligned_cols=30 Identities=10% Similarity=0.127 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy16513 11 EVEVERQSRAKAEKQRADLARELEELGERL 40 (156)
Q Consensus 11 ~le~e~~~r~k~EK~k~~l~~Ele~l~~~l 40 (156)
.++.+..+=..--+.-..|...+..|..+|
T Consensus 20 tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl 49 (68)
T PRK00295 20 TIQALNDVLVEQQRVIERLQLQMAALIKRQ 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444433333333333444444443333
No 190
>PF15294 Leu_zip: Leucine zipper
Probab=37.49 E-value=2.3e+02 Score=23.12 Aligned_cols=45 Identities=27% Similarity=0.365 Sum_probs=34.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH
Q psy16513 22 AEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRR 66 (156)
Q Consensus 22 ~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~ 66 (156)
+-+....|..|.+.|+..|..+....+...+=..+++.++.+++.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888888888888877777666666666778888888777
No 191
>PRK10698 phage shock protein PspA; Provisional
Probab=37.43 E-value=2e+02 Score=22.37 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHH-----HHHHHHH-------HHHHHHHHHHHHHHH
Q psy16513 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSA-----QIELNKK-------REAEMSKLRRDLEEA 71 (156)
Q Consensus 4 ~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~-----~~~~~kk-------~E~el~~l~~~lee~ 71 (156)
-|.++.+++...+..-.++=-.+..+...++.+...+......-.. .+.+-+. ....+..|+..++..
T Consensus 32 ~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~ 111 (222)
T PRK10698 32 MIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLV 111 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888887777776666666666666666666655443321111 1122222 455555555555555
Q ss_pred HHhhHHHHHHHHHhhHHHHHHHHHH
Q psy16513 72 NIQHESTLANLRKKHNDAVSEMGEQ 96 (156)
Q Consensus 72 ~~~~e~~~~~~k~k~~~~~~el~~q 96 (156)
...... +.....++...+.++...
T Consensus 112 ~~~~~~-L~~~l~~L~~ki~eak~k 135 (222)
T PRK10698 112 DETLAR-MKKEIGELENKLSETRAR 135 (222)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 554442 333333444444444333
No 192
>PRK04406 hypothetical protein; Provisional
Probab=37.40 E-value=1.1e+02 Score=19.61 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16513 48 SAQIELNKKREAEMSKLRRDL 68 (156)
Q Consensus 48 ~~~~~~~kk~E~el~~l~~~l 68 (156)
..+....-.+..++..|..++
T Consensus 35 ~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 35 SQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444443333
No 193
>KOG0946|consensus
Probab=37.23 E-value=3.7e+02 Score=25.52 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q psy16513 28 DLARELEELGERLE 41 (156)
Q Consensus 28 ~l~~Ele~l~~~le 41 (156)
.|...++.|..+|.
T Consensus 703 ql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 703 QLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHhc
Confidence 34444444444443
No 194
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=37.12 E-value=1.6e+02 Score=21.20 Aligned_cols=40 Identities=13% Similarity=0.388 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy16513 61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQL 100 (156)
Q Consensus 61 l~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l 100 (156)
+.++++.+.+.....+..+..++..+..++..+...++.+
T Consensus 12 i~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l 51 (149)
T PF07352_consen 12 IAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYL 51 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666665544
No 195
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=36.75 E-value=1.3e+02 Score=20.05 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=6.7
Q ss_pred HHHHHHHHHhhHHHHHHHH
Q psy16513 65 RRDLEEANIQHESTLANLR 83 (156)
Q Consensus 65 ~~~lee~~~~~e~~~~~~k 83 (156)
....+.........+..++
T Consensus 34 ~~~~~~~~~~I~~~f~~l~ 52 (127)
T smart00502 34 EENAADVEAQIKAAFDELR 52 (127)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 196
>KOG2264|consensus
Probab=36.48 E-value=3.4e+02 Score=24.83 Aligned_cols=65 Identities=23% Similarity=0.316 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 63 KLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLIIENSDLVRQLSKV 138 (156)
Q Consensus 63 ~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~r~k~~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~ 138 (156)
+..+-++.....+. .+...|.+++..+++++..++.+ ++.+..-...+.+|..+...-+++++++
T Consensus 83 e~~RI~~sVs~EL~-ele~krqel~seI~~~n~kiEel----------k~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 83 EQKRILASVSLELT-ELEVKRQELNSEIEEINTKIEEL----------KRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHH----------HHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 33444444444444 25556666776766666555544 4444444444555555555555665554
No 197
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=35.95 E-value=2.5e+02 Score=23.11 Aligned_cols=128 Identities=24% Similarity=0.340 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy16513 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRK 84 (156)
Q Consensus 5 i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~ 84 (156)
+.|+++-.-.---.-+.++.+|+.|.=+++-|...|+++ +..+..+++.+.+-.+.++ .+-....
T Consensus 86 l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~--------------eE~~~~~~re~~eK~~elE-r~K~~~d 150 (302)
T PF09738_consen 86 LAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEEL--------------EETLAQLQREYREKIRELE-RQKRAHD 150 (302)
T ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 344444443333344567777778888888888777664 4445555555555555444 2333344
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-------------HhHH-------HHh--------h------HHHHHHHHHHHHHHHHH
Q psy16513 85 KHNDAVSEMGEQIDQLNKLKT-------------KLDE-------ANR--------T------INDLDVARKKLIIENSD 130 (156)
Q Consensus 85 k~~~~~~el~~q~~~l~r~k~-------------~lee-------~~r--------~------~~el~~~~~~l~~E~~e 130 (156)
.+...+.+|..++.+....=. -..+ ..+ . =..|-..+++|..|..+
T Consensus 151 ~L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~ 230 (302)
T PF09738_consen 151 SLREELDELREQLKQRDELIEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKEE 230 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHHH
Confidence 444455555555532211111 0000 000 0 11256679999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16513 131 LVRQLSKVTADARMWKI 147 (156)
Q Consensus 131 l~r~l~e~e~~~~~~r~ 147 (156)
|.-++.++..++-+-+.
T Consensus 231 L~~qv~klk~qLee~~~ 247 (302)
T PF09738_consen 231 LLEQVRKLKLQLEERQS 247 (302)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999888866543
No 198
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=35.93 E-value=2.1e+02 Score=22.37 Aligned_cols=44 Identities=32% Similarity=0.407 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcC
Q psy16513 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGG 45 (156)
Q Consensus 2 ~~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~ 45 (156)
...|.+++.+|-..+....++=.....+.++++.+....+....
T Consensus 30 ~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~ 73 (225)
T COG1842 30 EQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEE 73 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888888888888888888888888888877665543
No 199
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=35.61 E-value=2.2e+02 Score=22.41 Aligned_cols=32 Identities=13% Similarity=0.253 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 113 TINDLDVARKKLIIENSDLVRQLSKVTADARM 144 (156)
Q Consensus 113 ~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~ 144 (156)
.+.++..++..+......+...|..++.-+.+
T Consensus 221 ~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L~~ 252 (264)
T PF06008_consen 221 NLEDLEKKKQELSEQQNEVSETLKEAEDLLDQ 252 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666555544
No 200
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=35.60 E-value=2.1e+02 Score=22.29 Aligned_cols=133 Identities=26% Similarity=0.400 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy16513 1 MQARIYELEEEVEVERQSRAK-AEKQRADLARELEELGERL-EEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHEST 78 (156)
Q Consensus 1 l~~~i~EL~e~le~e~~~r~k-~EK~k~~l~~Ele~l~~~l-e~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~ 78 (156)
|..+|..|...+..++.-+.. ++.....|..++.+|...+ .+-..-...-..+.++++.....+...++......+.
T Consensus 97 L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~~Ek~~Re~- 175 (247)
T PF06705_consen 97 LNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRLQEKIEKEKNTRES- 175 (247)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH---------HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 79 LANLRKKHNDAVSEMGEQIDQLNKLKT---------KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARM 144 (156)
Q Consensus 79 ~~~~k~k~~~~~~el~~q~~~l~r~k~---------~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~ 144 (156)
.+.++...++.+.+... -+++.......|......=...=+.+...|...-..++.
T Consensus 176 ----------~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~~R~~~Dd~Iv~aln~yt~~lQ~ 240 (247)
T PF06705_consen 176 ----------KLSELRSELEEVKRRREKGDEQFQNFVLEEIAALKNALALESQEREQSDDDIVQALNHYTKALQD 240 (247)
T ss_pred ----------HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
No 201
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=34.85 E-value=2.3e+02 Score=22.42 Aligned_cols=61 Identities=26% Similarity=0.374 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 9 EEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANI 73 (156)
Q Consensus 9 ~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~ 73 (156)
.|.+.+++..|..++-....+..++......|....+.-.....+.+ ++..++..++...-
T Consensus 170 pe~v~Al~~Ir~~L~~~~~~~e~~~~~a~~~L~~Ye~lg~~F~~ivr----eY~~l~~~ie~k~W 230 (238)
T PF14735_consen 170 PETVPALRKIRDHLEEAIEELEQELQKARQRLESYEGLGPEFEEIVR----EYTDLQQEIENKRW 230 (238)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHhHHHHHH----HHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999888877777666655 34455555555443
No 202
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=34.65 E-value=1.3e+02 Score=19.65 Aligned_cols=38 Identities=26% Similarity=0.236 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513 113 TINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYE 150 (156)
Q Consensus 113 ~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e 150 (156)
.+..+......+..+...+...+......+..|+.++-
T Consensus 63 ~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 63 AIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667888888888888888888888888888877664
No 203
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=34.54 E-value=1.2e+02 Score=19.28 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16513 121 RKKLIIENSDLVRQLSKVTAD 141 (156)
Q Consensus 121 ~~~l~~E~~el~r~l~e~e~~ 141 (156)
+..+..|+++|..++.+.+.+
T Consensus 5 v~~l~~EkeeL~~klk~~qee 25 (69)
T PF08912_consen 5 VANLAKEKEELNNKLKKQQEE 25 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 204
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=34.01 E-value=1.6e+02 Score=20.31 Aligned_cols=16 Identities=38% Similarity=0.403 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy16513 57 REAEMSKLRRDLEEAN 72 (156)
Q Consensus 57 ~E~el~~l~~~lee~~ 72 (156)
+.-+...|+..+.+..
T Consensus 41 L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 41 LRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4444444444444443
No 205
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=33.69 E-value=3.6e+02 Score=24.37 Aligned_cols=9 Identities=11% Similarity=-0.005 Sum_probs=3.5
Q ss_pred HHHHHHHhh
Q psy16513 142 ARMWKIKYE 150 (156)
Q Consensus 142 ~~~~r~k~e 150 (156)
..+..+.|+
T Consensus 470 ~~qL~~e~e 478 (594)
T PF05667_consen 470 YKQLVKELE 478 (594)
T ss_pred HHHHHHHHH
Confidence 333333344
No 206
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=33.36 E-value=2.3e+02 Score=21.90 Aligned_cols=32 Identities=16% Similarity=0.421 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy16513 74 QHESTLANLRKKHNDAVSEMGEQIDQLNKLKT 105 (156)
Q Consensus 74 ~~e~~~~~~k~k~~~~~~el~~q~~~l~r~k~ 105 (156)
.+...+..+...+...+..+...++.+.+.+.
T Consensus 136 ~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK 167 (221)
T PF05700_consen 136 IHNEQLEAMLKRLEKELAKLKKEIEEVNRERK 167 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555666666655554443
No 207
>KOG2077|consensus
Probab=32.99 E-value=2.7e+02 Score=25.36 Aligned_cols=46 Identities=26% Similarity=0.263 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 27 ADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN 72 (156)
Q Consensus 27 ~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~ 72 (156)
-+|.-|-+-|+.+|+....++.-.++..+.+|.++..++.++.+..
T Consensus 332 DeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar 377 (832)
T KOG2077|consen 332 DELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDAR 377 (832)
T ss_pred HhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555556666677777777777766663
No 208
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=32.86 E-value=1.6e+02 Score=20.12 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy16513 11 EVEVERQSRAKAEKQRADLARELEELGERL 40 (156)
Q Consensus 11 ~le~e~~~r~k~EK~k~~l~~Ele~l~~~l 40 (156)
+-+.+++.|.++++....-..+|++|...|
T Consensus 70 EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 70 EKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666677776666666666666554
No 209
>PRK14127 cell division protein GpsB; Provisional
Probab=32.00 E-value=1.8e+02 Score=20.24 Aligned_cols=8 Identities=13% Similarity=0.248 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy16513 89 AVSEMGEQ 96 (156)
Q Consensus 89 ~~~el~~q 96 (156)
+|.++-.+
T Consensus 27 EVD~FLd~ 34 (109)
T PRK14127 27 EVDKFLDD 34 (109)
T ss_pred HHHHHHHH
Confidence 33333333
No 210
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=31.69 E-value=1.3e+02 Score=18.44 Aligned_cols=30 Identities=10% Similarity=0.172 Sum_probs=14.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 109 EANRTINDLDVARKKLIIENSDLVRQLSKV 138 (156)
Q Consensus 109 e~~r~~~el~~~~~~l~~E~~el~r~l~e~ 138 (156)
.+...+..|..+..+|..+...+...+..+
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~a 36 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAA 36 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555554444444333
No 211
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=31.55 E-value=1.4e+02 Score=18.88 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16513 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELG 37 (156)
Q Consensus 3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~ 37 (156)
+.|..|...++..-+--...+-....|..|-+.+.
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~ 39 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAE 39 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333333333333333333
No 212
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=30.44 E-value=2.4e+02 Score=21.27 Aligned_cols=27 Identities=19% Similarity=0.099 Sum_probs=12.8
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy16513 107 LDEANRTINDLDVARKKLIIENSDLVR 133 (156)
Q Consensus 107 lee~~r~~~el~~~~~~l~~E~~el~r 133 (156)
++........|.++..-|..+++.+..
T Consensus 139 le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 139 LEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555554443
No 213
>KOG4673|consensus
Probab=30.28 E-value=4.6e+02 Score=24.53 Aligned_cols=74 Identities=14% Similarity=0.118 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy16513 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHES 77 (156)
Q Consensus 4 ~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~ 77 (156)
+|..|+.-|++-...=-..++++..|..+...+..+..-.....+...-++--+-..++.+-+++.-.+..+.+
T Consensus 354 ~i~~Ln~~leaReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDa 427 (961)
T KOG4673|consen 354 EIKMLNNALEAREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDA 427 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 57777777775555555677888888777666655543333333333334444555566666666655555554
No 214
>KOG0804|consensus
Probab=30.21 E-value=3.8e+02 Score=23.53 Aligned_cols=21 Identities=5% Similarity=0.102 Sum_probs=7.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q psy16513 47 TSAQIELNKKREAEMSKLRRD 67 (156)
Q Consensus 47 ~~~~~~~~kk~E~el~~l~~~ 67 (156)
+...+....++...+.++..+
T Consensus 377 kk~~e~k~~q~q~k~~k~~ke 397 (493)
T KOG0804|consen 377 KKIVERKLQQLQTKLKKCQKE 397 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 215
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=30.06 E-value=2.4e+02 Score=21.27 Aligned_cols=44 Identities=25% Similarity=0.362 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCc
Q psy16513 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGA 46 (156)
Q Consensus 3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~ 46 (156)
..+..|+.+|..+-+.-.++-+.+.++...+.++..-+..++..
T Consensus 31 ~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~ 74 (236)
T PF09325_consen 31 DYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKS 74 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35788999999999999999999999999999999988776654
No 216
>PRK00846 hypothetical protein; Provisional
Probab=29.83 E-value=1.6e+02 Score=19.12 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=13.7
Q ss_pred HHhcCccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 41 EEAGGATSAQIELNKKREAEMSKLRRDLEEA 71 (156)
Q Consensus 41 e~~~~~~~~~~~~~kk~E~el~~l~~~lee~ 71 (156)
+.++.....+.....++..++.-+..++.++
T Consensus 30 e~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 30 TELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333444444444444444444444443
No 217
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=29.69 E-value=3.1e+02 Score=24.11 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 112 RTINDLDVARKKLIIENSDLVRQLS 136 (156)
Q Consensus 112 r~~~el~~~~~~l~~E~~el~r~l~ 136 (156)
+...++...+..++.++..|..+++
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555544443
No 218
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=29.41 E-value=2e+02 Score=20.07 Aligned_cols=51 Identities=25% Similarity=0.321 Sum_probs=37.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 84 KKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLIIENSDLVRQLSK 137 (156)
Q Consensus 84 ~k~~~~~~el~~q~~~l~r~k~~lee~~r~~~el~~~~~~l~~E~~el~r~l~e 137 (156)
+-..+++..++.++..+-+ ++++++..+.++...-..|+-|++.|...|.+
T Consensus 4 keiFd~v~~le~~l~~l~~---el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 4 KEIFDQVDNLEEQLGVLLA---ELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3456677777777765422 66777778888888888888888888887777
No 219
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.31 E-value=2.9e+02 Score=21.92 Aligned_cols=73 Identities=11% Similarity=0.065 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy16513 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHES 77 (156)
Q Consensus 5 i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~ 77 (156)
-.++.+.++.+...=+.++|....+..+..++..++.+.+..-..-..+-..+...|..+..-++.....+..
T Consensus 53 F~e~~ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~ 125 (240)
T cd07667 53 FAAIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEE 125 (240)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555566666555555555555555554444444444455666666666666666666554
No 220
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=29.08 E-value=4.9e+02 Score=24.43 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=21.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513 111 NRTINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYE 150 (156)
Q Consensus 111 ~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e 150 (156)
.+.+.+|...+.....++..|...|+-.+-+.+.. |||
T Consensus 119 ~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~L--kye 156 (769)
T PF05911_consen 119 EKLIAELSEEKSQAEAEIEDLMARLESTEKENSSL--KYE 156 (769)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHH
Confidence 33455555555566666666666666666555555 554
No 221
>PRK02793 phi X174 lysis protein; Provisional
Probab=29.02 E-value=1.6e+02 Score=18.71 Aligned_cols=12 Identities=17% Similarity=0.210 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q psy16513 57 REAEMSKLRRDL 68 (156)
Q Consensus 57 ~E~el~~l~~~l 68 (156)
+..++..|..++
T Consensus 41 L~~~l~~L~~rl 52 (72)
T PRK02793 41 LRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 222
>PRK10132 hypothetical protein; Provisional
Probab=28.78 E-value=2e+02 Score=19.85 Aligned_cols=49 Identities=14% Similarity=0.233 Sum_probs=27.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhcCccH-----HHHHHHHHHHHHHHHHHHHHHH
Q psy16513 22 AEKQRADLARELEELGERLEEAGGATS-----AQIELNKKREAEMSKLRRDLEE 70 (156)
Q Consensus 22 ~EK~k~~l~~Ele~l~~~le~~~~~~~-----~~~~~~kk~E~el~~l~~~lee 70 (156)
++-++..|..++..|...++++...+. ....++.+.+..+...+..+.+
T Consensus 10 ~~~q~e~L~~Dl~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~ 63 (108)
T PRK10132 10 VDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMHG 63 (108)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444556777777777777765543332 2344555556555555544443
No 223
>KOG0994|consensus
Probab=28.49 E-value=6.2e+02 Score=25.43 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=12.0
Q ss_pred HHHhcCccHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 40 LEEAGGATSAQIELNKKREAEMSKLRRDLEE 70 (156)
Q Consensus 40 le~~~~~~~~~~~~~kk~E~el~~l~~~lee 70 (156)
|..+...+.+.++.....-.++.+|-..+++
T Consensus 1600 l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~ 1630 (1758)
T KOG0994|consen 1600 LAKVQEETAAAEKLATSATQQLGELETRMEE 1630 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334444433333
No 224
>PF13514 AAA_27: AAA domain
Probab=28.17 E-value=5.6e+02 Score=24.81 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=31.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513 109 EANRTINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYE 150 (156)
Q Consensus 109 e~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e 150 (156)
........+...+..+..+...+...+..+...+..|+..|.
T Consensus 670 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 711 (1111)
T PF13514_consen 670 QAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQ 711 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345556677777777888888888888888888888775
No 225
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=28.09 E-value=3.9e+02 Score=22.94 Aligned_cols=25 Identities=16% Similarity=0.104 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513 126 IENSDLVRQLSKVTADARMWKIKYE 150 (156)
Q Consensus 126 ~E~~el~r~l~e~e~~~~~~r~k~e 150 (156)
.++..|+|.++-.+......-.+|+
T Consensus 355 ~el~~L~Re~~~~~~~Y~~l~~r~e 379 (498)
T TIGR03007 355 AELTQLNRDYEVNKSNYEQLLTRRE 379 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544444444443
No 226
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=27.30 E-value=2.6e+02 Score=20.71 Aligned_cols=66 Identities=23% Similarity=0.244 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy16513 12 VEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHES 77 (156)
Q Consensus 12 le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~ 77 (156)
++.....+..+.--.-....|++.+..+|.++.........-.-+++......+..|-+..+++..
T Consensus 8 i~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ 73 (159)
T PF05384_consen 8 IDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDR 73 (159)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 333333333333333344444455555554444444444445555777777788888888888753
No 227
>KOG0804|consensus
Probab=27.23 E-value=4.3e+02 Score=23.20 Aligned_cols=54 Identities=17% Similarity=0.084 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q psy16513 32 ELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKH 86 (156)
Q Consensus 32 Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~ 86 (156)
.++.+..+++.+.......+...+-.|..+..++.++......... +.++-+.+
T Consensus 355 ~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~-~~E~n~~l 408 (493)
T KOG0804|consen 355 YYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKE-EREENKKL 408 (493)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3445555555555555666666666787888888777777766663 44443333
No 228
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=27.05 E-value=1.8e+02 Score=18.96 Aligned_cols=28 Identities=21% Similarity=0.340 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16513 122 KKLIIENSDLVRQLSKVTADARMWKIKY 149 (156)
Q Consensus 122 ~~l~~E~~el~r~l~e~e~~~~~~r~k~ 149 (156)
..+..|+..|.+.+.++++++++.+.-|
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~~~ 30 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKREF 30 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456677778888888888888876653
No 229
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=26.64 E-value=2.9e+02 Score=21.04 Aligned_cols=18 Identities=39% Similarity=0.558 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHhcC
Q psy16513 28 DLARELEELGERLEEAGG 45 (156)
Q Consensus 28 ~l~~Ele~l~~~le~~~~ 45 (156)
.|..++.++...++++..
T Consensus 16 ~L~n~l~elq~~l~~l~~ 33 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRK 33 (194)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 230
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=26.23 E-value=1.8e+02 Score=18.60 Aligned_cols=28 Identities=21% Similarity=0.150 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 117 LDVARKKLIIENSDLVRQLSKVTADARM 144 (156)
Q Consensus 117 l~~~~~~l~~E~~el~r~l~e~e~~~~~ 144 (156)
+......|..++..+.+.+......+.+
T Consensus 41 ~~keNieLKve~~~L~~el~~~~~~l~~ 68 (75)
T PF07989_consen 41 LLKENIELKVEVESLKRELQEKKKLLKE 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444433
No 231
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=26.19 E-value=4.9e+02 Score=23.47 Aligned_cols=12 Identities=8% Similarity=0.213 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q psy16513 5 IYELEEEVEVER 16 (156)
Q Consensus 5 i~EL~e~le~e~ 16 (156)
+..+..+++.++
T Consensus 302 l~~~~~q~~~e~ 313 (650)
T TIGR03185 302 LDSTKAQLQKEE 313 (650)
T ss_pred HHHHHHHHHHHH
Confidence 344444454444
No 232
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=26.12 E-value=1.6e+02 Score=23.19 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513 117 LDVARKKLIIENSDLVRQLSKVTADARMWKIKYE 150 (156)
Q Consensus 117 l~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e 150 (156)
+...+.+|+..+..++..+....+.+.+|++.|-
T Consensus 13 ~~~~L~rle~qi~q~~~~~~~~qs~l~~~~~r~t 46 (251)
T COG5415 13 YTADLSRLESQIHQLDVALKKSQSILSQWQSRLT 46 (251)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455667777777777788888888888887763
No 233
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=26.08 E-value=4.8e+02 Score=23.36 Aligned_cols=81 Identities=15% Similarity=0.223 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy16513 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANL 82 (156)
Q Consensus 3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~ 82 (156)
..+.++...++..+....+--........+++.|..++......... +.+.+......++..+.+........+..+
T Consensus 191 ~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~---~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L 267 (555)
T TIGR03545 191 QDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKS---AKNDLQNDKKQLKADLAELKKAPQNDLKRL 267 (555)
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHhccHhHHHHH
Q ss_pred HHhh
Q psy16513 83 RKKH 86 (156)
Q Consensus 83 k~k~ 86 (156)
+.+.
T Consensus 268 ~~~~ 271 (555)
T TIGR03545 268 ENKY 271 (555)
T ss_pred HHHh
No 234
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=25.85 E-value=2.5e+02 Score=20.00 Aligned_cols=18 Identities=17% Similarity=0.455 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy16513 26 RADLARELEELGERLEEA 43 (156)
Q Consensus 26 k~~l~~Ele~l~~~le~~ 43 (156)
|+.|..-...+..+|+.+
T Consensus 38 rr~m~~A~~~v~kql~~v 55 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQV 55 (126)
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 235
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=25.81 E-value=5.7e+02 Score=24.11 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=17.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 109 EANRTINDLDVARKKLIIENSDLVRQLSKVTADARMW 145 (156)
Q Consensus 109 e~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~ 145 (156)
.....+.++...+..+.....++.+.+++....+..|
T Consensus 400 ~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~ 436 (908)
T COG0419 400 ELSAALEEIQEELEELEKELEELERELEELEEEIKKL 436 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444455555555555444444
No 236
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=25.44 E-value=2.9e+02 Score=20.64 Aligned_cols=18 Identities=11% Similarity=0.359 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHhhHH
Q psy16513 60 EMSKLRRDLEEANIQHES 77 (156)
Q Consensus 60 el~~l~~~lee~~~~~e~ 77 (156)
.|..++..+....+.+..
T Consensus 132 ~L~~f~~~l~~D~~~l~~ 149 (184)
T PF05791_consen 132 ELNDFKDKLQKDSRNLKT 149 (184)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 237
>KOG0995|consensus
Probab=25.28 E-value=5.1e+02 Score=23.39 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513 117 LDVARKKLIIENSDLVRQLSKVTADARMWKIKYE 150 (156)
Q Consensus 117 l~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e 150 (156)
|...+..+.+...++.+-+.....+++..-.+|+
T Consensus 444 Lq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~ 477 (581)
T KOG0995|consen 444 LQEHFSNKASTIEEKIQILGEIELELKKAESKYE 477 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555666666666666665555554
No 238
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=25.27 E-value=1.9e+02 Score=18.41 Aligned_cols=40 Identities=15% Similarity=0.340 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHH
Q psy16513 58 EAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQID 98 (156)
Q Consensus 58 E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~ 98 (156)
+..++.|+..++....... .+......+..+|..|+++++
T Consensus 27 q~sy~~Lq~~~~~t~~~~a-~L~~qv~~Ls~qv~~Ls~ql~ 66 (70)
T PF04899_consen 27 QSSYADLQHMFEQTSQENA-ALSEQVNNLSQQVQRLSEQLE 66 (70)
T ss_pred HHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333333 244444444444444444444
No 239
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=25.24 E-value=5.6e+02 Score=23.83 Aligned_cols=43 Identities=30% Similarity=0.361 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcC
Q psy16513 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGG 45 (156)
Q Consensus 3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~ 45 (156)
..+.+|++.|..+-.-|...-+.-.....|.+.|..+|-..+.
T Consensus 169 ~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~ 211 (739)
T PF07111_consen 169 SKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQE 211 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4567788877777776767777777777777777777654443
No 240
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=24.30 E-value=4.1e+02 Score=21.94 Aligned_cols=12 Identities=42% Similarity=0.609 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q psy16513 29 LARELEELGERL 40 (156)
Q Consensus 29 l~~Ele~l~~~l 40 (156)
|..|+++....|
T Consensus 89 LEtEiES~rsRL 100 (305)
T PF14915_consen 89 LETEIESYRSRL 100 (305)
T ss_pred HHHHHHHHHHHH
Confidence 333444444444
No 241
>KOG4673|consensus
Probab=24.26 E-value=6e+02 Score=23.84 Aligned_cols=20 Identities=25% Similarity=0.194 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16513 123 KLIIENSDLVRQLSKVTADA 142 (156)
Q Consensus 123 ~l~~E~~el~r~l~e~e~~~ 142 (156)
-+++|+.+|+|.|..++.-+
T Consensus 609 ~~R~Ei~~LqrRlqaaE~R~ 628 (961)
T KOG4673|consen 609 MFRGEIEDLQRRLQAAERRC 628 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666665543
No 242
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=24.15 E-value=3e+02 Score=20.38 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy16513 57 REAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNK 102 (156)
Q Consensus 57 ~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~r 102 (156)
++..+..+...++...+.++...+..-.-....++++.+|+..+..
T Consensus 84 Le~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~ 129 (157)
T COG3352 84 LEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKM 129 (157)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555531111111111135555555554433
No 243
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=23.97 E-value=2e+02 Score=18.12 Aligned_cols=36 Identities=19% Similarity=0.023 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 113 TINDLDVARKKLIIENSDLVRQLSKVTADARMWKIK 148 (156)
Q Consensus 113 ~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k 148 (156)
.+..|.....+|..|+.-|..++....++-.+...|
T Consensus 8 kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ek 43 (65)
T TIGR02449 8 QVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEK 43 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666655555555555554444333
No 244
>KOG3863|consensus
Probab=23.90 E-value=2.4e+02 Score=25.52 Aligned_cols=41 Identities=27% Similarity=0.407 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy16513 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEA 43 (156)
Q Consensus 3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~ 43 (156)
..|..|+.+++.+++-+-++-++|..+.+.|..|+.+|-.+
T Consensus 511 d~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~L 551 (604)
T KOG3863|consen 511 DCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSEL 551 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999999999999999888544
No 245
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=23.90 E-value=4.4e+02 Score=22.17 Aligned_cols=9 Identities=22% Similarity=0.556 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy16513 135 LSKVTADAR 143 (156)
Q Consensus 135 l~e~e~~~~ 143 (156)
+.++..++.
T Consensus 337 l~kLk~EI~ 345 (359)
T PF10498_consen 337 LTKLKQEIK 345 (359)
T ss_pred HHHHHHHHH
Confidence 333333333
No 246
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=23.76 E-value=1.9e+02 Score=24.15 Aligned_cols=11 Identities=18% Similarity=0.371 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q psy16513 61 MSKLRRDLEEA 71 (156)
Q Consensus 61 l~~l~~~lee~ 71 (156)
+..++..+...
T Consensus 86 V~~lq~Sl~~l 96 (326)
T PF04582_consen 86 VTSLQSSLSSL 96 (326)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 247
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=23.70 E-value=3.7e+02 Score=21.22 Aligned_cols=42 Identities=29% Similarity=0.344 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcC
Q psy16513 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGG 45 (156)
Q Consensus 4 ~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~ 45 (156)
.|+.|++++..++..+......+..+..--..+...+..+.+
T Consensus 69 ~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~ 110 (256)
T PF14932_consen 69 DLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEG 110 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 467777787777777777777666666555555545444433
No 248
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.56 E-value=3.2e+02 Score=20.41 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q psy16513 53 LNKKREAEMSK 63 (156)
Q Consensus 53 ~~kk~E~el~~ 63 (156)
++++.+..+.-
T Consensus 55 VRkqY~~~i~~ 65 (161)
T TIGR02894 55 VRKQYEEAIEL 65 (161)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 249
>PHA01750 hypothetical protein
Probab=23.37 E-value=2.1e+02 Score=18.19 Aligned_cols=14 Identities=36% Similarity=0.541 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHh
Q psy16513 30 ARELEELGERLEEA 43 (156)
Q Consensus 30 ~~Ele~l~~~le~~ 43 (156)
..|++.|..++.+.
T Consensus 41 ~~ELdNL~~ei~~~ 54 (75)
T PHA01750 41 NSELDNLKTEIEEL 54 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555565555444
No 250
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=23.21 E-value=2.5e+02 Score=19.12 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 113 TINDLDVARKKLIIENSDLVRQLSKVTADARMW 145 (156)
Q Consensus 113 ~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~ 145 (156)
........+..|..+++.|....+..+..+...
T Consensus 75 ~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 75 KKEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555444
No 251
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=23.14 E-value=5.8e+02 Score=23.30 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513 125 IIENSDLVRQLSKVTADARMWKIKYE 150 (156)
Q Consensus 125 ~~E~~el~r~l~e~e~~~~~~r~k~e 150 (156)
+.++..|+|.++-.+.-....-.+|+
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~ 400 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYR 400 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666655555544444
No 252
>PRK10404 hypothetical protein; Provisional
Probab=23.13 E-value=2.5e+02 Score=19.07 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCccH
Q psy16513 25 QRADLARELEELGERLEEAGGATS 48 (156)
Q Consensus 25 ~k~~l~~Ele~l~~~le~~~~~~~ 48 (156)
.+..|..++..|...++++...+.
T Consensus 6 ~~~~l~~dl~~L~~dle~Ll~~~~ 29 (101)
T PRK10404 6 GDTRIDDDLTLLSETLEEVLRSSG 29 (101)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhh
Confidence 345666667777777666654443
No 253
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=22.94 E-value=4.6e+02 Score=22.05 Aligned_cols=44 Identities=23% Similarity=0.235 Sum_probs=20.3
Q ss_pred HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16513 106 KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKY 149 (156)
Q Consensus 106 ~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~ 149 (156)
++.+++..+..|.....+|+.++..-...|.=.+-.+-..|..|
T Consensus 339 ~L~~a~~~l~~L~~~~~~Le~di~~K~~sL~iD~~~c~~~R~~~ 382 (384)
T PF03148_consen 339 KLDEAEASLQKLERTRLRLEEDIAVKNNSLFIDRERCMQLRRRY 382 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccC
Confidence 44444445555555555555554444444433333444444443
No 254
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=22.77 E-value=5.5e+02 Score=22.89 Aligned_cols=93 Identities=17% Similarity=0.177 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy16513 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLAN 81 (156)
Q Consensus 2 ~~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~ 81 (156)
..+|.+|..++-....--.....+-..|..-++......+.....-.........+++++.-.++-+++.-..+.+.+.+
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLas 498 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLAS 498 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q ss_pred HHHhhHHHHHHHH
Q psy16513 82 LRKKHNDAVSEMG 94 (156)
Q Consensus 82 ~k~k~~~~~~el~ 94 (156)
|-.++..+-+++.
T Consensus 499 mNeqL~~Q~eeI~ 511 (518)
T PF10212_consen 499 MNEQLAKQREEIQ 511 (518)
T ss_pred HHHHHHHHHHHHH
No 255
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=22.73 E-value=3.3e+02 Score=20.33 Aligned_cols=33 Identities=21% Similarity=0.096 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 116 DLDVARKKLIIENSDLVRQLSKVTADARMWKIK 148 (156)
Q Consensus 116 el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k 148 (156)
+|...+.+++.|+..|...|-..+..+..||.|
T Consensus 33 eLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 33 ELRSELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 444555555555555555555555555555544
No 256
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=22.66 E-value=3.2e+02 Score=20.19 Aligned_cols=88 Identities=25% Similarity=0.325 Sum_probs=50.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHH---HHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy16513 6 YELEEEVEVER-QSRAKAEKQRADLARELEELG---ERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLAN 81 (156)
Q Consensus 6 ~EL~e~le~e~-~~r~k~EK~k~~l~~Ele~l~---~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~ 81 (156)
..-+++++--+ .+|.++....+.+..+--.|+ ..|+.+.++ .-.++.-++.+++-.++.+.+ +..
T Consensus 37 ~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP----------~RkEv~~vRkkID~vNreLkp-l~~ 105 (159)
T PF04949_consen 37 RAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADP----------MRKEVEMVRKKIDSVNRELKP-LGQ 105 (159)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccc----------hHHHHHHHHHHHHHHHHHhhH-HHH
Confidence 33344444222 455566665555554433333 344433332 334567778888888888884 777
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Q psy16513 82 LRKKHNDAVSEMGEQIDQLNKLK 104 (156)
Q Consensus 82 ~k~k~~~~~~el~~q~~~l~r~k 104 (156)
.+.|--..+.+.-+.+...++.|
T Consensus 106 ~cqKKEkEykealea~nEknkeK 128 (159)
T PF04949_consen 106 SCQKKEKEYKEALEAFNEKNKEK 128 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776666666666665544444
No 257
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=22.55 E-value=3.1e+02 Score=19.98 Aligned_cols=40 Identities=18% Similarity=0.329 Sum_probs=25.4
Q ss_pred HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 106 KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMW 145 (156)
Q Consensus 106 ~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~ 145 (156)
-++-+++.+.++...+..+...+.+|.........++++.
T Consensus 95 Aie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~ 134 (145)
T COG1730 95 AIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQL 134 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666677777777777666666666666665544
No 258
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=22.26 E-value=3e+02 Score=19.60 Aligned_cols=40 Identities=20% Similarity=0.197 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16513 112 RTINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYET 151 (156)
Q Consensus 112 r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e~ 151 (156)
..+..|....+.++.-+.+|.+.+.-++..+.+=|+||-.
T Consensus 32 arIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~ 71 (134)
T PF08232_consen 32 ARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKK 71 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444555555555568999999999999999999853
No 259
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=22.19 E-value=1.6e+02 Score=20.79 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 113 TINDLDVARKKLIIENSDLVRQLSKVT 139 (156)
Q Consensus 113 ~~~el~~~~~~l~~E~~el~r~l~e~e 139 (156)
..++|...+.+|+.||..|-++|-...
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 467899999999999998888876654
No 260
>KOG0963|consensus
Probab=21.58 E-value=6.3e+02 Score=23.09 Aligned_cols=23 Identities=22% Similarity=0.175 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy16513 128 NSDLVRQLSKVTADARMWKIKYE 150 (156)
Q Consensus 128 ~~el~r~l~e~e~~~~~~r~k~e 150 (156)
+..|.+++....+.+-.++.|..
T Consensus 319 I~~le~~l~~~~~~leel~~kL~ 341 (629)
T KOG0963|consen 319 ISALEKELKAKISELEELKEKLN 341 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555544443
No 261
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=21.57 E-value=5.6e+02 Score=22.54 Aligned_cols=134 Identities=13% Similarity=0.177 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHhcCccHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHH
Q psy16513 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERL-EEAGGATSAQIELNKKREAEMSK-LRRDLEEANIQHESTL 79 (156)
Q Consensus 2 ~~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~l-e~~~~~~~~~~~~~kk~E~el~~-l~~~lee~~~~~e~~~ 79 (156)
...+..+.+++...+.....+.-....+...++...... +...--..+.+++...++.--++ |..+-..........+
T Consensus 59 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l 138 (475)
T PRK10361 59 RAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSL 138 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH-HhHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 80 ANLRKKHNDAVSEMGEQIDQLNKLKT-KLDEANRTINDLDVARKKLIIENSDLVRQL 135 (156)
Q Consensus 80 ~~~k~k~~~~~~el~~q~~~l~r~k~-~lee~~r~~~el~~~~~~l~~E~~el~r~l 135 (156)
..+.+-+..++..+..++..+-.... .-..+...+..|...-.++..|-..|.+.|
T Consensus 139 ~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~AL 195 (475)
T PRK10361 139 NSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRAL 195 (475)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 262
>PRK14074 rpsF 30S ribosomal protein S6; Provisional
Probab=21.29 E-value=1.2e+02 Score=24.21 Aligned_cols=29 Identities=34% Similarity=0.645 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16513 6 YELEEEVEVERQSRAKAEKQRADLARELEELG 37 (156)
Q Consensus 6 ~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~ 37 (156)
-||++++.+++.++.++.| +|..++.++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 113 (257)
T PRK14074 85 VELEEDLSNLKEVKSKIDK---ELKDDLKDLG 113 (257)
T ss_pred HHHHHHHhhHHHHHHHhhH---HHHhHhhhcc
Confidence 5899999999999999998 4555666554
No 263
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=21.21 E-value=8.4e+02 Score=24.41 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy16513 4 RIYELEEEVEVERQSRAKAEKQ 25 (156)
Q Consensus 4 ~i~EL~e~le~e~~~r~k~EK~ 25 (156)
.|..|.+.++++...+.+++..
T Consensus 221 ~i~~l~e~~~~~~~~~~~le~l 242 (1353)
T TIGR02680 221 ELTDVADALEQLDEYRDELERL 242 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777776666653
No 264
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=21.10 E-value=4.7e+02 Score=21.44 Aligned_cols=10 Identities=30% Similarity=0.627 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q psy16513 57 REAEMSKLRR 66 (156)
Q Consensus 57 ~E~el~~l~~ 66 (156)
+|.++..|++
T Consensus 23 lE~QldkLkK 32 (307)
T PF10481_consen 23 LEQQLDKLKK 32 (307)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 265
>KOG4348|consensus
Probab=20.66 E-value=5.6e+02 Score=22.61 Aligned_cols=37 Identities=41% Similarity=0.522 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 32 ELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEA 71 (156)
Q Consensus 32 Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~ 71 (156)
-+++|++++-++....-+ +.+..-.++..|+..|++.
T Consensus 570 s~delr~qi~el~~ive~---lk~~~~kel~kl~~dleee 606 (627)
T KOG4348|consen 570 SLDELRAQIIELLCIVEA---LKKDHGKELEKLRKDLEEE 606 (627)
T ss_pred hHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 345555555444322222 3344444555555555543
No 266
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=20.64 E-value=3.2e+02 Score=19.40 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=9.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Q psy16513 17 QSRAKAEKQRADLARELEELGERL 40 (156)
Q Consensus 17 ~~r~k~EK~k~~l~~Ele~l~~~l 40 (156)
..+-.+......+..+++.+...+
T Consensus 52 ~~~e~l~~~~~~l~~d~~~l~~~~ 75 (151)
T PF11559_consen 52 EQREDLSDKLRRLRSDIERLQNDV 75 (151)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333333344444444444444333
No 267
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=20.63 E-value=5.1e+02 Score=21.72 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513 127 ENSDLVRQLSKVTADARMWKIKYE 150 (156)
Q Consensus 127 E~~el~r~l~e~e~~~~~~r~k~e 150 (156)
++..|+|.++-+.......-.+|+
T Consensus 343 ~~~~L~r~~~~~~~~y~~ll~r~~ 366 (444)
T TIGR03017 343 EMSVLQRDVENAQRAYDAAMQRYT 366 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555444444443
No 268
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=20.53 E-value=3.9e+02 Score=20.33 Aligned_cols=43 Identities=28% Similarity=0.306 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcC
Q psy16513 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGG 45 (156)
Q Consensus 3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~ 45 (156)
..|..|+.+|..+.+.=..+-+.+.+|..-+.++...+..++.
T Consensus 11 ~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~ 53 (216)
T cd07627 11 QYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSS 53 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999998888889999999999999999988877764
No 269
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=20.48 E-value=3.3e+02 Score=19.38 Aligned_cols=32 Identities=9% Similarity=0.251 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy16513 7 ELEEEVEVERQSRAKAEKQRADLARELEELGE 38 (156)
Q Consensus 7 EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~ 38 (156)
.+.++++.-...+..++..+.+....+.+...
T Consensus 42 ~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~ 73 (141)
T PRK08476 42 SIKNDLEKVKTNSSDVSEIEHEIETILKNARE 73 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444554445555555444444444444443
No 270
>KOG4807|consensus
Probab=20.40 E-value=5.7e+02 Score=22.20 Aligned_cols=125 Identities=18% Similarity=0.243 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHH----HHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy16513 26 RADLARELEELGERL----EEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLN 101 (156)
Q Consensus 26 k~~l~~Ele~l~~~l----e~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~ 101 (156)
.+.-.+||+.|..+- -+-+.++...++.+|+.-. .++-+.|+... .++..+..+++-+...+..+...++-|+
T Consensus 358 QRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAhr--EEmeRELeKsq-SvnsdveaLRrQyleelqsvqRELeVLS 434 (593)
T KOG4807|consen 358 QRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAHR--EEMERELEKSQ-SVNSDVEALRRQYLEELQSVQRELEVLS 434 (593)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHH--HHHHHHHHhhh-ccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555442 2223333444444444211 12334444444 2233456666666555555444444333
Q ss_pred HHHH----HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhcC
Q psy16513 102 KLKT----KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTAD----ARMWKIKYETNK 153 (156)
Q Consensus 102 r~k~----~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~----~~~~r~k~e~~~ 153 (156)
-.=+ ....+-+.+..-...+++-+.|+-+|.+.-.+++.- +.+.|+-.-+|+
T Consensus 435 EQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdG 494 (593)
T KOG4807|consen 435 EQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDG 494 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCC
Confidence 2222 333444556666667777778877777777776654 556666555444
No 271
>PF08340 DUF1732: Domain of unknown function (DUF1732); InterPro: IPR013551 This domain of unknown function is found at the C terminus of bacterial proteins, many of which are hypothetical and include proteins of the YicC family.
Probab=20.38 E-value=1.3e+02 Score=20.16 Aligned_cols=45 Identities=18% Similarity=0.335 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCccHHHH-HHHHHHHHHHHHHHHHHH
Q psy16513 25 QRADLARELEELGERLEEAGGATSAQI-ELNKKREAEMSKLRRDLE 69 (156)
Q Consensus 25 ~k~~l~~Ele~l~~~le~~~~~~~~~~-~~~kk~E~el~~l~~~le 69 (156)
.|.|...|+.-|.+-+..+...-..-. ...|+++.-+.++.|+..
T Consensus 9 ~k~DI~EEl~RL~sH~~~f~~~l~~~~~~vGrkLdFl~QEm~RE~N 54 (87)
T PF08340_consen 9 DKADISEELVRLKSHLKQFRELLESEGEPVGRKLDFLLQEMNREIN 54 (87)
T ss_pred HHcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCCccchhhhccHHH
Confidence 567888888888877655543322221 355666655554444433
No 272
>KOG3156|consensus
Probab=20.24 E-value=4.3e+02 Score=20.71 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=9.6
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q psy16513 18 SRAKAEKQRADLARELEELG 37 (156)
Q Consensus 18 ~r~k~EK~k~~l~~Ele~l~ 37 (156)
+++-+||.|++|..|+....
T Consensus 128 lkndlEk~ks~lr~ei~~~~ 147 (220)
T KOG3156|consen 128 LKNDLEKLKSSLRHEISKTT 147 (220)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 34445555555555554433
No 273
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=20.17 E-value=4.4e+02 Score=20.75 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=17.9
Q ss_pred HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 106 KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTAD 141 (156)
Q Consensus 106 ~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~ 141 (156)
++.++...+..|......-..+...|+..+..+...
T Consensus 83 e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~ 118 (246)
T PF00769_consen 83 ELREAEAEIARLEEESERKEEEAEELQEELEEARED 118 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555555555555444
Done!