Query psy16513
Match_columns 156
No_of_seqs 116 out of 475
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 23:15:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16513.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16513hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fxo_A Myosin heavy chain, car 97.0 0.036 1.2E-06 38.6 13.5 60 79-141 67-126 (129)
2 2eqb_B RAB guanine nucleotide 96.6 0.032 1.1E-06 37.1 9.6 40 4-43 27-66 (97)
3 2fxo_A Myosin heavy chain, car 96.5 0.12 4.1E-06 35.9 16.7 95 4-99 21-122 (129)
4 2ocy_A RAB guanine nucleotide 96.4 0.087 3E-06 37.9 11.6 40 4-43 59-98 (154)
5 3swk_A Vimentin; cytoskeleton, 95.9 0.13 4.3E-06 33.4 9.4 83 5-102 2-84 (86)
6 3o0z_A RHO-associated protein 95.7 0.38 1.3E-05 35.0 20.5 97 1-98 11-107 (168)
7 3na7_A HP0958; flagellar bioge 95.7 0.51 1.7E-05 36.3 17.3 71 5-75 13-83 (256)
8 3ol1_A Vimentin; structural ge 95.6 0.32 1.1E-05 33.3 13.5 68 2-76 19-86 (119)
9 3ghg_A Fibrinogen alpha chain; 95.4 0.33 1.1E-05 41.2 12.6 114 21-141 54-191 (562)
10 2v71_A Nuclear distribution pr 95.3 0.59 2E-05 34.7 17.0 116 29-150 22-140 (189)
11 2dfs_A Myosin-5A; myosin-V, in 95.1 0.62 2.1E-05 43.1 14.7 115 26-141 923-1045(1080)
12 2dfs_A Myosin-5A; myosin-V, in 95.0 0.59 2E-05 43.2 14.2 49 53-105 985-1033(1080)
13 1i84_S Smooth muscle myosin he 94.4 0.16 5.3E-06 47.3 9.0 36 5-40 866-901 (1184)
14 1i84_S Smooth muscle myosin he 94.2 0.15 5.1E-06 47.4 8.4 38 6-43 860-897 (1184)
15 2e7s_A RAB guanine nucleotide 93.2 0.13 4.4E-06 36.2 4.7 39 4-42 47-85 (135)
16 3swk_A Vimentin; cytoskeleton, 91.1 0.5 1.7E-05 30.5 5.3 18 135-152 23-40 (86)
17 3o0z_A RHO-associated protein 90.2 4 0.00014 29.6 13.5 70 7-76 45-114 (168)
18 3tnu_A Keratin, type I cytoske 89.9 3.5 0.00012 28.4 12.7 89 56-151 35-130 (131)
19 3bas_A Myosin heavy chain, str 88.7 3.1 0.00011 26.8 7.7 31 9-39 27-57 (89)
20 3tnu_B Keratin, type II cytosk 88.3 4.6 0.00016 27.7 13.2 87 57-150 34-127 (129)
21 2eqb_B RAB guanine nucleotide 88.3 4 0.00014 26.9 11.0 32 12-43 7-38 (97)
22 2v66_B Nuclear distribution pr 86.8 5.5 0.00019 26.9 12.7 38 113-150 50-87 (111)
23 1deq_A Fibrinogen (alpha chain 85.1 14 0.00048 30.1 15.0 27 23-49 59-85 (390)
24 2wt7_B Transcription factor MA 84.0 3.7 0.00013 26.7 6.1 38 114-151 50-87 (90)
25 1m1j_A Fibrinogen alpha subuni 82.8 20 0.00068 30.0 16.1 100 22-128 56-155 (491)
26 3oja_B Anopheles plasmodium-re 82.3 21 0.00072 29.9 13.7 23 123-145 548-570 (597)
27 1nfn_A Apolipoprotein E3; lipi 81.7 13 0.00043 27.2 9.1 33 65-97 105-137 (191)
28 3trt_A Vimentin; cytoskeleton, 80.8 7.7 0.00026 23.9 9.3 29 117-145 47-75 (77)
29 3tnu_A Keratin, type I cytoske 78.0 14 0.00048 25.2 11.4 24 112-135 105-128 (131)
30 3tnu_B Keratin, type II cytosk 76.8 15 0.00051 25.0 12.0 24 112-135 103-126 (129)
31 2v71_A Nuclear distribution pr 74.0 24 0.00081 26.0 15.9 25 53-77 64-88 (189)
32 3ghg_A Fibrinogen alpha chain; 73.3 43 0.0015 28.6 14.5 90 53-142 58-154 (562)
33 2ocy_A RAB guanine nucleotide 72.7 23 0.00078 25.2 15.0 40 57-97 56-95 (154)
34 3vkg_A Dynein heavy chain, cyt 72.5 97 0.0033 32.3 19.9 11 30-40 1940-1950(3245)
35 3s84_A Apolipoprotein A-IV; fo 72.4 31 0.0011 26.6 20.3 15 26-40 83-97 (273)
36 2e7s_A RAB guanine nucleotide 71.9 22 0.00076 24.7 7.5 40 57-97 44-83 (135)
37 1x79_B RAB GTPase binding effe 71.4 20 0.0007 24.1 10.3 20 113-132 85-104 (112)
38 1gs9_A Apolipoprotein E, APOE4 71.4 25 0.00086 25.1 8.2 34 64-97 104-137 (165)
39 2wt7_A Proto-oncogene protein 71.0 14 0.00048 22.0 5.8 35 114-148 25-59 (63)
40 3s84_A Apolipoprotein A-IV; fo 69.8 36 0.0012 26.2 20.6 23 74-96 96-118 (273)
41 3oja_B Anopheles plasmodium-re 69.4 49 0.0017 27.6 16.7 29 8-36 461-489 (597)
42 3lay_A Zinc resistance-associa 68.0 31 0.0011 24.9 9.8 68 9-76 70-137 (175)
43 1t3j_A Mitofusin 1; coiled coi 67.4 23 0.00079 23.1 6.8 35 16-50 39-73 (96)
44 2b9c_A Striated-muscle alpha t 66.7 30 0.001 24.2 11.6 34 117-150 99-135 (147)
45 1x79_B RAB GTPase binding effe 66.5 27 0.00091 23.5 9.8 16 5-20 15-30 (112)
46 4etp_A Kinesin-like protein KA 64.8 31 0.0011 28.1 8.2 38 3-40 3-40 (403)
47 2efr_A General control protein 63.8 36 0.0012 24.1 18.8 70 28-98 46-115 (155)
48 1t2k_D Cyclic-AMP-dependent tr 62.5 21 0.00072 20.9 6.2 35 114-148 24-58 (61)
49 1ci6_A Transcription factor AT 62.0 22 0.00077 21.1 6.0 35 114-148 25-59 (63)
50 3bas_A Myosin heavy chain, str 61.9 28 0.00095 22.1 9.8 34 6-39 17-50 (89)
51 2p22_C Protein SRN2; endosome, 61.3 45 0.0016 24.4 7.9 23 127-149 91-113 (192)
52 1deq_A Fibrinogen (alpha chain 61.2 66 0.0023 26.2 11.6 22 55-76 63-84 (390)
53 2wt7_B Transcription factor MA 60.1 32 0.0011 22.2 6.5 38 5-42 50-87 (90)
54 2v66_B Nuclear distribution pr 57.5 40 0.0014 22.6 11.0 26 20-45 24-49 (111)
55 1gd2_E Transcription factor PA 57.5 30 0.001 21.2 5.5 23 16-38 21-43 (70)
56 4h22_A Leucine-rich repeat fli 55.6 42 0.0014 22.2 9.9 63 20-97 19-81 (103)
57 3ol1_A Vimentin; structural ge 55.5 44 0.0015 22.4 12.6 17 29-45 18-34 (119)
58 1gd2_E Transcription factor PA 54.2 28 0.00096 21.3 4.7 50 79-145 20-69 (70)
59 1hjb_A Ccaat/enhancer binding 52.6 43 0.0015 21.4 5.7 35 116-150 40-74 (87)
60 3he5_A Synzip1; heterodimeric 52.0 28 0.00095 19.1 4.7 17 53-69 32-48 (49)
61 2a01_A Apolipoprotein A-I; fou 51.9 73 0.0025 23.9 12.2 24 73-96 161-184 (243)
62 2v4h_A NF-kappa-B essential mo 50.9 53 0.0018 22.0 12.0 9 32-40 25-33 (110)
63 4gkw_A Spindle assembly abnorm 49.1 64 0.0022 22.4 11.5 13 28-40 15-27 (167)
64 1jnm_A Proto-oncogene C-JUN; B 48.3 28 0.00095 20.5 4.0 31 116-146 26-56 (62)
65 1jnm_A Proto-oncogene C-JUN; B 47.8 28 0.00096 20.4 4.0 20 5-24 24-43 (62)
66 1avy_A Fibritin, gpwac M; bact 45.8 50 0.0017 20.3 5.3 41 116-156 12-53 (74)
67 3q0x_A Centriole protein; cent 45.8 77 0.0026 23.9 7.0 45 106-150 172-216 (228)
68 1t2k_D Cyclic-AMP-dependent tr 45.4 44 0.0015 19.5 6.3 32 5-36 24-55 (61)
69 3swf_A CGMP-gated cation chann 42.8 59 0.002 20.2 7.1 44 110-153 12-59 (74)
70 2ke4_A CDC42-interacting prote 42.6 68 0.0023 20.8 7.9 76 53-141 16-91 (98)
71 3oja_A Leucine-rich immune mol 42.3 1.4E+02 0.0047 24.3 11.5 40 111-150 434-473 (487)
72 1d7m_A Cortexillin I; coiled-c 42.2 67 0.0023 20.7 9.3 61 2-76 3-63 (101)
73 3mq9_A Bone marrow stromal ant 42.0 1.4E+02 0.0046 24.1 13.4 97 33-147 375-471 (471)
74 3m91_A Proteasome-associated A 41.6 49 0.0017 18.9 7.0 39 5-43 11-49 (51)
75 1gu4_A CAAT/enhancer binding p 41.0 64 0.0022 20.1 5.0 34 116-149 40-73 (78)
76 3iv1_A Tumor susceptibility ge 40.3 67 0.0023 20.1 9.7 26 51-76 10-35 (78)
77 2yy0_A C-MYC-binding protein; 40.2 52 0.0018 18.9 4.7 26 123-148 23-48 (53)
78 3nmd_A CGMP dependent protein 40.1 64 0.0022 19.9 6.8 16 130-145 44-59 (72)
79 2xdj_A Uncharacterized protein 39.7 69 0.0024 20.1 6.1 32 114-145 22-53 (83)
80 2no2_A HIP-I, huntingtin-inter 39.6 80 0.0027 20.8 14.2 34 4-37 9-42 (107)
81 1deb_A APC protein, adenomatou 39.5 54 0.0018 18.8 6.3 17 113-129 25-41 (54)
82 2wt7_A Proto-oncogene protein 38.2 61 0.0021 19.0 6.4 14 5-18 25-38 (63)
83 2p22_C Protein SRN2; endosome, 37.5 1.2E+02 0.004 22.1 9.2 21 79-99 126-146 (192)
84 3u06_A Protein claret segregat 37.2 1.5E+02 0.0053 24.0 8.1 36 5-40 5-40 (412)
85 1nfn_A Apolipoprotein E3; lipi 36.7 1.2E+02 0.004 21.9 11.1 10 107-116 130-139 (191)
86 3kin_B Kinesin heavy chain; mo 36.1 64 0.0022 21.5 4.7 32 116-147 86-117 (117)
87 2xnx_M M protein, M1-BC1; cell 35.8 24 0.00082 24.8 2.5 37 6-42 69-105 (146)
88 3i00_A HIP-I, huntingtin-inter 35.8 1E+02 0.0034 20.8 9.7 43 27-72 18-60 (120)
89 3hnw_A Uncharacterized protein 35.6 1.1E+02 0.0036 21.1 9.6 12 28-39 86-97 (138)
90 3trt_A Vimentin; cytoskeleton, 35.0 75 0.0026 19.1 10.1 17 103-119 54-70 (77)
91 2a01_A Apolipoprotein A-I; fou 34.4 1.4E+02 0.0049 22.2 14.7 31 66-96 110-140 (243)
92 3s4r_A Vimentin; alpha-helix, 34.0 92 0.0031 19.9 10.5 23 111-133 62-84 (93)
93 2zqm_A Prefoldin beta subunit 33.4 96 0.0033 19.9 10.7 38 113-150 71-108 (117)
94 2dgc_A Protein (GCN4); basic d 33.3 73 0.0025 18.8 4.2 12 88-99 30-41 (63)
95 3r2p_A Apolipoprotein A-I; amp 33.2 1.3E+02 0.0044 21.3 10.9 18 24-41 82-99 (185)
96 1ci6_A Transcription factor AT 32.7 77 0.0026 18.6 6.5 32 5-36 25-56 (63)
97 4gkw_A Spindle assembly abnorm 32.5 1.2E+02 0.0042 20.9 19.1 75 4-86 12-86 (167)
98 1dh3_A Transcription factor CR 32.3 31 0.0011 19.9 2.3 22 117-138 27-48 (55)
99 2p2u_A HOST-nuclease inhibitor 31.9 1.4E+02 0.0047 21.2 7.2 42 60-101 24-65 (171)
100 1aa0_A Fibritin, gpwac E; bact 31.8 1.1E+02 0.0038 20.2 5.3 41 116-156 54-95 (113)
101 3u1c_A Tropomyosin alpha-1 cha 30.6 1.1E+02 0.0037 19.7 11.5 49 27-75 12-60 (101)
102 3zwh_Q Myosin-9; Ca-binding pr 30.5 16 0.00055 20.5 0.8 28 123-150 3-30 (45)
103 1gk4_A Vimentin; intermediate 30.1 1E+02 0.0034 19.1 10.5 16 137-152 65-80 (84)
104 1m1j_B Fibrinogen beta chain; 30.0 2.4E+02 0.0082 23.5 14.3 38 24-61 93-130 (464)
105 3cl3_D NF-kappa-B essential mo 29.8 1.4E+02 0.0046 20.5 7.8 91 29-130 7-101 (130)
106 1x8y_A Lamin A/C; structural p 29.6 1.1E+02 0.0036 19.2 9.3 14 138-151 68-81 (86)
107 3m9b_A Proteasome-associated A 26.9 1.3E+02 0.0045 23.0 5.6 9 35-43 58-66 (251)
108 4e61_A Protein BIM1; EB1-like 26.6 1.4E+02 0.0049 19.7 5.1 42 104-145 17-58 (106)
109 3iv1_A Tumor susceptibility ge 25.9 1.2E+02 0.0043 18.8 8.5 12 89-100 19-30 (78)
110 1ic2_A Tropomyosin alpha chain 25.5 1.2E+02 0.0041 18.6 9.6 50 27-76 9-58 (81)
111 3efg_A Protein SLYX homolog; x 25.0 1.3E+02 0.0043 18.6 4.5 22 48-69 38-59 (78)
112 2jee_A YIIU; FTSZ, septum, coi 25.0 1.3E+02 0.0045 18.8 9.1 42 107-148 29-70 (81)
113 2xdj_A Uncharacterized protein 24.9 1.3E+02 0.0045 18.8 6.1 15 60-74 35-49 (83)
114 1gk6_A Vimentin; intermediate 24.0 1.1E+02 0.0039 17.6 6.4 17 137-153 39-55 (59)
115 3qh9_A Liprin-beta-2; coiled-c 23.5 1.4E+02 0.0049 18.7 9.1 44 106-149 34-77 (81)
116 2oa5_A Hypothetical protein BQ 23.2 1.6E+02 0.0055 19.6 4.8 25 113-137 9-33 (110)
117 1fxk_A Prefoldin; archaeal pro 23.0 1.5E+02 0.0051 18.7 10.3 38 113-150 66-103 (107)
118 3m9b_A Proteasome-associated A 22.9 1.2E+02 0.004 23.3 4.6 36 110-145 59-94 (251)
119 3hnw_A Uncharacterized protein 22.5 1.9E+02 0.0065 19.7 10.9 30 113-142 104-133 (138)
120 3u59_A Tropomyosin beta chain; 22.4 1.6E+02 0.0054 18.8 11.5 46 27-72 12-57 (101)
121 2wuj_A Septum site-determining 21.7 1.2E+02 0.0043 17.3 4.0 27 113-139 28-54 (57)
122 1ytz_T Troponin T; muscle, THI 21.2 1.8E+02 0.0063 19.1 6.5 44 3-46 49-92 (107)
123 1tu3_F RAB GTPase binding effe 21.1 90 0.0031 19.4 3.0 25 19-43 7-31 (79)
124 1j1d_B Troponin T, TNT; THIN f 20.7 1.9E+02 0.0064 19.0 5.7 13 31-43 77-89 (106)
125 3fx7_A Putative uncharacterize 20.2 1.8E+02 0.0063 18.7 10.1 73 13-88 9-81 (94)
No 1
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=97.04 E-value=0.036 Score=38.63 Aligned_cols=60 Identities=13% Similarity=0.250 Sum_probs=37.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 79 LANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLIIENSDLVRQLSKVTAD 141 (156)
Q Consensus 79 ~~~~k~k~~~~~~el~~q~~~l~r~k~~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~ 141 (156)
....+.++...-.+|...+..+ ..++++......+|...+++++.+|.+|..++++.+..
T Consensus 67 ~EE~~~~L~~~k~eLe~~l~el---~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~~ 126 (129)
T 2fxo_A 67 AEERCDQLIKNKIQLEAKVKEM---NKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELT 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444332 22445555567778888888888888888888887653
No 2
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.59 E-value=0.032 Score=37.11 Aligned_cols=40 Identities=30% Similarity=0.484 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy16513 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEA 43 (156)
Q Consensus 4 ~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~ 43 (156)
.+..|...|..++..|..+|+.+..+..||++|++.|.+-
T Consensus 27 e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeE 66 (97)
T 2eqb_B 27 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDE 66 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777888888888888888888888888887443
No 3
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.46 E-value=0.12 Score=35.92 Aligned_cols=95 Identities=21% Similarity=0.312 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhH
Q psy16513 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKK-------REAEMSKLRRDLEEANIQHE 76 (156)
Q Consensus 4 ~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk-------~E~el~~l~~~lee~~~~~e 76 (156)
.|..|.+.+......|..++.....|..+..+|..+|..-.......++.+.+ ++..+.++...+++......
T Consensus 21 el~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~ 100 (129)
T 2fxo_A 21 EFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNA 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777788888888888877776666666666655 34455555555555554444
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Q psy16513 77 STLANLRKKHNDAVSEMGEQIDQ 99 (156)
Q Consensus 77 ~~~~~~k~k~~~~~~el~~q~~~ 99 (156)
.+..-++|+...+.+|..+++.
T Consensus 101 -~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 101 -ELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666666666666653
No 4
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=96.38 E-value=0.087 Score=37.92 Aligned_cols=40 Identities=30% Similarity=0.484 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy16513 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEA 43 (156)
Q Consensus 4 ~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~ 43 (156)
.+..|.+.+..++..|..+|+.+..+..||++|++.|.+-
T Consensus 59 e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeE 98 (154)
T 2ocy_A 59 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDE 98 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888888888888888888888443
No 5
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=95.85 E-value=0.13 Score=33.43 Aligned_cols=83 Identities=27% Similarity=0.436 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy16513 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRK 84 (156)
Q Consensus 5 i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~ 84 (156)
|.+|..+++....-+++++-+...+...+++++..+++-. .++...|..+..|++.+++.....-. +
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~-------~~R~~~E~d~~~LrkdvD~a~l~r~d-L----- 68 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM-------LQREEAENTLQSFRQDVDNASLARLD-L----- 68 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTTHHHHHHHHHH-H-----
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHH-H-----
Confidence 6788999998888888888888888888888888776542 35556899999999999998876653 3
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy16513 85 KHNDAVSEMGEQIDQLNK 102 (156)
Q Consensus 85 k~~~~~~el~~q~~~l~r 102 (156)
...++.|.+.+..|++
T Consensus 69 --E~kvesL~eEl~fLkk 84 (86)
T 3swk_A 69 --ERKVESLQEEIAFLKK 84 (86)
T ss_dssp --HHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHHhh
Confidence 3456777777776643
No 6
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.74 E-value=0.38 Score=35.04 Aligned_cols=97 Identities=10% Similarity=0.193 Sum_probs=71.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy16513 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLA 80 (156)
Q Consensus 1 l~~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~ 80 (156)
|+-++.|+++-|-++-..-.++-|.-.+++.-+..+-..+-++.+........+-.++.++..|+..|+...+... ..+
T Consensus 11 LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~-q~s 89 (168)
T 3o0z_A 11 LQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRG-HDS 89 (168)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 4568999999999999999999999999999988888888887777777666667788888888888887776655 244
Q ss_pred HHHHhhHHHHHHHHHHHH
Q psy16513 81 NLRKKHNDAVSEMGEQID 98 (156)
Q Consensus 81 ~~k~k~~~~~~el~~q~~ 98 (156)
.+..-+...+..|...++
T Consensus 90 e~~~elq~ri~~L~~El~ 107 (168)
T 3o0z_A 90 EMIGDLQARITSLQEEVK 107 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444333333444444333
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.70 E-value=0.51 Score=36.28 Aligned_cols=71 Identities=11% Similarity=0.068 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQH 75 (156)
Q Consensus 5 i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~ 75 (156)
++.+-..++.....+..+-....+|..++..+...+..+.........-.++++..+..++..+.......
T Consensus 13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666666666666666666666665555555566666666666666666555444
No 8
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=95.61 E-value=0.32 Score=33.33 Aligned_cols=68 Identities=24% Similarity=0.421 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy16513 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHE 76 (156)
Q Consensus 2 ~~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e 76 (156)
.+.|.+|..+|+....-+++++-+...+...+++++..++.-. ..+...|..+..+++.+++.....-
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~-------~~r~~~E~di~~lrK~lD~~~l~r~ 86 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM-------LQREEAENTLQSFRQDVDNASLARL 86 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHhhhcccHHHHHHH
Confidence 3568888888888888888888888888888888888876542 3455688888889998888776554
No 9
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=95.41 E-value=0.33 Score=41.25 Aligned_cols=114 Identities=14% Similarity=0.144 Sum_probs=58.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy16513 21 KAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQL 100 (156)
Q Consensus 21 k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l 100 (156)
-+.|+=.++..-|++|+.+|+++...........+..-..+..-.....+..-...+...+|+.++..--..+.+|+.
T Consensus 54 lLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQls-- 131 (562)
T 3ghg_A 54 LIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQ-- 131 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 344555677777777777777776555554444333222221111111111112221111444444443344444443
Q ss_pred HHHHHHhHHHHhhHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHH
Q psy16513 101 NKLKTKLDEANRTINDLDVARKKLIIENS------------------------DLVRQLSKVTAD 141 (156)
Q Consensus 101 ~r~k~~lee~~r~~~el~~~~~~l~~E~~------------------------el~r~l~e~e~~ 141 (156)
++.-++..|.++...+.+|+.+++ ++++||+.+.+.
T Consensus 132 -----nIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~ 191 (562)
T 3ghg_A 132 -----HIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAK 191 (562)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhhc
Confidence 334455566777777777777663 788888776553
No 10
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.34 E-value=0.59 Score=34.67 Aligned_cols=116 Identities=16% Similarity=0.189 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy16513 29 LARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEA---NIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKT 105 (156)
Q Consensus 29 l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~---~~~~e~~~~~~k~k~~~~~~el~~q~~~l~r~k~ 105 (156)
+...+.+|..+|++++..+.. +-.-+|.++..+.+..-.. ...+...+...|.|+.....+...++..|++.
T Consensus 22 ~~q~~~~le~El~EFqesSrE---LE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~e-- 96 (189)
T 2v71_A 22 YKQSFQEARDELVEFQEGSRE---LEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDD-- 96 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 344455555555555433332 3333444443333222222 22222234455666655555555555444332
Q ss_pred HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513 106 KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYE 150 (156)
Q Consensus 106 ~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e 150 (156)
+..+......+...++.|+..+++|.|+.--..+.+.+...||.
T Consensus 97 -l~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln 140 (189)
T 2v71_A 97 -LSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLN 140 (189)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHH
Confidence 33344456667888888888888888888888888888887775
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.13 E-value=0.62 Score=43.07 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHhhHHHHHHHHHHHH
Q psy16513 26 RADLARELEELGERLEEAGGATSAQIE----LNKKREAEMSKLRRDLEEANIQHESTLANL---RKKHNDAVSEMGEQID 98 (156)
Q Consensus 26 k~~l~~Ele~l~~~le~~~~~~~~~~~----~~kk~E~el~~l~~~lee~~~~~e~~~~~~---k~k~~~~~~el~~q~~ 98 (156)
...|...+.+|...|++.......... +..+.+.++..|+..+++....... .... ...+...+.++...+.
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e-~~~~~~~v~~L~~e~~~l~~~~~ 1001 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEE-AKNATNRVLSLQEEIAKLRKELH 1001 (1080)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555443322221111 2234566666676666665554332 3222 2333445666666666
Q ss_pred HHHHHHHHhHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 99 QLNKLKTKLDEA-NRTINDLDVARKKLIIENSDLVRQLSKVTAD 141 (156)
Q Consensus 99 ~l~r~k~~lee~-~r~~~el~~~~~~l~~E~~el~r~l~e~e~~ 141 (156)
.+.+.+..+++. .....+|...+..|+.++..|..++++++..
T Consensus 1002 ~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A 1002 QTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRR 1045 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555533332 2233456666666777776666666666644
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.00 E-value=0.59 Score=43.18 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy16513 53 LNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKT 105 (156)
Q Consensus 53 ~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~r~k~ 105 (156)
..+.++.++..++..+......... + ..++....+++.+.+.+|.+.+.
T Consensus 985 ~v~~L~~e~~~l~~~~~~~~ke~~~-l---ee~~~~~~~~L~~kv~~L~~e~~ 1033 (1080)
T 2dfs_A 985 RVLSLQEEIAKLRKELHQTQTEKKT-I---EEWADKYKHETEQLVSELKEQNT 1033 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666665555543 3 22233333456666666665554
No 13
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.44 E-value=0.16 Score=47.30 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy16513 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERL 40 (156)
Q Consensus 5 i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~l 40 (156)
+.++...+.........++.....|..++..+..++
T Consensus 866 L~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L 901 (1184)
T 1i84_S 866 LQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKL 901 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433
No 14
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.24 E-value=0.15 Score=47.41 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy16513 6 YELEEEVEVERQSRAKAEKQRADLARELEELGERLEEA 43 (156)
Q Consensus 6 ~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~ 43 (156)
.++.+.++..+..-.+++....++...+..|..++..+
T Consensus 860 ~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l 897 (1184)
T 1i84_S 860 QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLL 897 (1184)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555444
No 15
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.24 E-value=0.13 Score=36.17 Aligned_cols=39 Identities=31% Similarity=0.497 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy16513 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEE 42 (156)
Q Consensus 4 ~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~ 42 (156)
.+..|...+..++..|..+|..+..+..||++|++.|.+
T Consensus 47 e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFe 85 (135)
T 2e7s_A 47 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 85 (135)
T ss_dssp HHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777777777777777777744
No 16
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=91.06 E-value=0.5 Score=30.53 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhhhc
Q psy16513 135 LSKVTADARMWKIKYETN 152 (156)
Q Consensus 135 l~e~e~~~~~~r~k~e~~ 152 (156)
+..+...+..||.|||++
T Consensus 23 ~dn~~~~~edfk~KyE~E 40 (86)
T 3swk_A 23 RDNLAEDIMRLREKLQEE 40 (86)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445555666666643
No 17
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=90.21 E-value=4 Score=29.56 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy16513 7 ELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHE 76 (156)
Q Consensus 7 EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e 76 (156)
.++.-+-.++.....++..|..|..++..|.+.|+.-.....-..++.+-++..+..|..+++.......
T Consensus 45 ~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~ 114 (168)
T 3o0z_A 45 QLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLE 114 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445556667777777777777777777665544444444444455455555544444443333
No 18
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=89.93 E-value=3.5 Score=28.39 Aligned_cols=89 Identities=16% Similarity=0.251 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHH------
Q psy16513 56 KREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLIIENS------ 129 (156)
Q Consensus 56 k~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~r~k~~lee~~r~~~el~~~~~~l~~E~~------ 129 (156)
....++.++++.+.......+. +..++.-+...+.++....+. .+.+++..+..+...+.++..+..
T Consensus 35 ~~k~Ei~elrr~iq~L~~el~~-l~~~~~sLE~~l~e~e~~~~~------~l~~~q~~i~~lE~eL~~~r~em~~ql~EY 107 (131)
T 3tnu_A 35 SGKSEISELRRTMQNLEIELQS-QLSMKASLENSLEETKGRYCM------QLAQIQEMIGSVEEQLAQLRCEMEQQNQEY 107 (131)
T ss_dssp ------CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777777766663 555565566666666655542 344444444445555544444433
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhh
Q psy16513 130 -DLVRQLSKVTADARMWKIKYET 151 (156)
Q Consensus 130 -el~r~l~e~e~~~~~~r~k~e~ 151 (156)
+|-.---.++.+++-+|+=.|+
T Consensus 108 q~Ll~vKl~Ld~EIatYRkLLEG 130 (131)
T 3tnu_A 108 KILLDVKTRLEQEIATYRRLLEG 130 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhHCc
Confidence 2222222456667777665553
No 19
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=88.73 E-value=3.1 Score=26.78 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy16513 9 EEEVEVERQSRAKAEKQRADLARELEELGER 39 (156)
Q Consensus 9 ~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~ 39 (156)
.+.++.....|..++.....|..+..+|..+
T Consensus 27 ke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 27 KEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444444333
No 20
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=88.31 E-value=4.6 Score=27.65 Aligned_cols=87 Identities=13% Similarity=0.240 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHH-------
Q psy16513 57 REAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLIIENS------- 129 (156)
Q Consensus 57 ~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~r~k~~lee~~r~~~el~~~~~~l~~E~~------- 129 (156)
...++.++++.+.......+. +..++.-+...+.++....+. .+.+++..+..+...+.++..+..
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~-l~~~~~~LE~~l~e~e~~~~~------~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq 106 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDN-VKKQCANLQNAIADAEQRGEL------ALKDARNKLAELEEALQKAKQDMARLLREYQ 106 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 445677777777766666663 555555555566665555442 344444444444444444444432
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy16513 130 DLVRQLSKVTADARMWKIKYE 150 (156)
Q Consensus 130 el~r~l~e~e~~~~~~r~k~e 150 (156)
+|-.---.++.+++-+|+=.|
T Consensus 107 ~LlnvKl~Ld~EIatYRkLLE 127 (129)
T 3tnu_B 107 ELMNTKLALDVEIATYRKLLE 127 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhHC
Confidence 222222244566666665444
No 21
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.27 E-value=4 Score=26.91 Aligned_cols=32 Identities=13% Similarity=0.220 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy16513 12 VEVERQSRAKAEKQRADLARELEELGERLEEA 43 (156)
Q Consensus 12 le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~ 43 (156)
++.++.--..++....+...++..|...|...
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE 38 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKE 38 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444444455555555566666666555443
No 22
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=86.78 E-value=5.5 Score=26.89 Aligned_cols=38 Identities=16% Similarity=0.147 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513 113 TINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYE 150 (156)
Q Consensus 113 ~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e 150 (156)
....+...++.|+..+++|.|+---..+.+.++-+||.
T Consensus 50 ~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n 87 (111)
T 2v66_B 50 IKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLN 87 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHH
Confidence 44457788888888888888888888888888888875
No 23
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=85.14 E-value=14 Score=30.11 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=14.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHhcCccHH
Q psy16513 23 EKQRADLARELEELGERLEEAGGATSA 49 (156)
Q Consensus 23 EK~k~~l~~Ele~l~~~le~~~~~~~~ 49 (156)
.++-.++..-++.|+..|+++......
T Consensus 59 dk~er~~~~rIe~L~~~L~~~s~s~~~ 85 (390)
T 1deq_A 59 DEVDQDFTSRINKLRDSLFNYQKNSKD 85 (390)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhhH
Confidence 333345555566666666555444333
No 24
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=83.98 E-value=3.7 Score=26.67 Aligned_cols=38 Identities=21% Similarity=0.400 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16513 114 INDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYET 151 (156)
Q Consensus 114 ~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e~ 151 (156)
+.+|......|..+...|...+.....++..|+.||+.
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666777777777788888888999999984
No 25
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=82.78 E-value=20 Score=30.00 Aligned_cols=100 Identities=8% Similarity=0.161 Sum_probs=43.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy16513 22 AEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLN 101 (156)
Q Consensus 22 ~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~ 101 (156)
+.|+-.++..-+++|+..|++........-...+..-.-+..-.....+..........+|+.++..--.-+..++.
T Consensus 56 L~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~--- 132 (491)
T 1m1j_A 56 IDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVN--- 132 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 44555566666666776776665544443333333222222222222222222222222222222221122222222
Q ss_pred HHHHHhHHHHhhHHHHHHHHHHHHHHH
Q psy16513 102 KLKTKLDEANRTINDLDVARKKLIIEN 128 (156)
Q Consensus 102 r~k~~lee~~r~~~el~~~~~~l~~E~ 128 (156)
+|.-++..+.++...+.+|+.+.
T Consensus 133 ----~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 133 ----RIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333445666666777777666
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.30 E-value=21 Score=29.90 Aligned_cols=23 Identities=4% Similarity=0.024 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 123 KLIIENSDLVRQLSKVTADARMW 145 (156)
Q Consensus 123 ~l~~E~~el~r~l~e~e~~~~~~ 145 (156)
.++..+.+...++.+...+++.|
T Consensus 548 ~le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHH
Confidence 33333333333333333333333
No 27
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=81.67 E-value=13 Score=27.24 Aligned_cols=33 Identities=9% Similarity=0.115 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHH
Q psy16513 65 RRDLEEANIQHESTLANLRKKHNDAVSEMGEQI 97 (156)
Q Consensus 65 ~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~ 97 (156)
+..+++....+.....+++.+....++++..++
T Consensus 105 ~kdlEelr~kL~P~~eEL~~~l~~~~Eelr~~L 137 (191)
T 1nfn_A 105 GADMEDVCGRLVQYRGEVQAMLGQSTEELRVRL 137 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555554444444444
No 28
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=80.77 E-value=7.7 Score=23.87 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 117 LDVARKKLIIENSDLVRQLSKVTADARMW 145 (156)
Q Consensus 117 l~~~~~~l~~E~~el~r~l~e~e~~~~~~ 145 (156)
....+.....|+.++.+.+..++.++...
T Consensus 47 ~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 47 NNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344445555555555555555555443
No 29
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=78.01 E-value=14 Score=25.25 Aligned_cols=24 Identities=21% Similarity=0.097 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 112 RTINDLDVARKKLIIENSDLVRQL 135 (156)
Q Consensus 112 r~~~el~~~~~~l~~E~~el~r~l 135 (156)
+...+|-..+-.|..|+..+.+-|
T Consensus 105 ~EYq~Ll~vKl~Ld~EIatYRkLL 128 (131)
T 3tnu_A 105 QEYKILLDVKTRLEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344556677777777777666555
No 30
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=76.85 E-value=15 Score=24.99 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 112 RTINDLDVARKKLIIENSDLVRQL 135 (156)
Q Consensus 112 r~~~el~~~~~~l~~E~~el~r~l 135 (156)
+...+|-..+-.|..|+..+.+-|
T Consensus 103 ~EYq~LlnvKl~Ld~EIatYRkLL 126 (129)
T 3tnu_B 103 REYQELMNTKLALDVEIATYRKLL 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344556677777777777665554
No 31
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=74.02 E-value=24 Score=25.96 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHH
Q psy16513 53 LNKKREAEMSKLRRDLEEANIQHES 77 (156)
Q Consensus 53 ~~kk~E~el~~l~~~lee~~~~~e~ 77 (156)
.+.++..++..|+.++......+..
T Consensus 64 ~~~~L~~E~e~~k~K~~~~~~e~~~ 88 (189)
T 2v71_A 64 DNQRLKYEVEALKEKLEHQYAQSYK 88 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666555554443
No 32
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=73.27 E-value=43 Score=28.56 Aligned_cols=90 Identities=10% Similarity=0.172 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhH------HHHHHHHHHHHHHH-HHHHHhHHHHhhHHHHHHHHHHHH
Q psy16513 53 LNKKREAEMSKLRRDLEEANIQHESTLANLRKKHN------DAVSEMGEQIDQLN-KLKTKLDEANRTINDLDVARKKLI 125 (156)
Q Consensus 53 ~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~------~~~~el~~q~~~l~-r~k~~lee~~r~~~el~~~~~~l~ 125 (156)
..+.+..-+++|+..|++...++...-+-.+.+.. ....+....+.++. -++.++..+++.++.....++-|+
T Consensus 58 qErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQ 137 (562)
T 3ghg_A 58 VNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQ 137 (562)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556667777777766555542222221111 12223333333222 222255566666666556677777
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16513 126 IENSDLVRQLSKVTADA 142 (156)
Q Consensus 126 ~E~~el~r~l~e~e~~~ 142 (156)
.-+.++...+.++|..+
T Consensus 138 snLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 138 KNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777766677777665
No 33
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=72.71 E-value=23 Score=25.19 Aligned_cols=40 Identities=23% Similarity=0.388 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHH
Q psy16513 57 REAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQI 97 (156)
Q Consensus 57 ~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~ 97 (156)
.+.++..|...+.+...... ....-+.+....+++|+-.+
T Consensus 56 ~~~e~~~L~~~l~~E~~~R~-~aE~~~~~ie~ElEeLTasL 95 (154)
T 2ocy_A 56 RDDEVKRLREDIAKENELRT-KAEEEADKLNKEVEDLTASL 95 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777776666 36677777777777777765
No 34
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=72.46 E-value=97 Score=32.30 Aligned_cols=11 Identities=18% Similarity=0.208 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q psy16513 30 ARELEELGERL 40 (156)
Q Consensus 30 ~~Ele~l~~~l 40 (156)
+.+|..+.-+|
T Consensus 1940 ~~~L~~~~~~L 1950 (3245)
T 3vkg_A 1940 QVSLAQKNREL 1950 (3245)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 35
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=72.40 E-value=31 Score=26.60 Aligned_cols=15 Identities=20% Similarity=0.226 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy16513 26 RADLARELEELGERL 40 (156)
Q Consensus 26 k~~l~~Ele~l~~~l 40 (156)
+..+...+++|...|
T Consensus 83 ~~~l~~~~eeLr~~L 97 (273)
T 3s84_A 83 ERVLRENADSLQASL 97 (273)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHH
Confidence 333444444444444
No 36
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=71.89 E-value=22 Score=24.70 Aligned_cols=40 Identities=23% Similarity=0.388 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHH
Q psy16513 57 REAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQI 97 (156)
Q Consensus 57 ~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~ 97 (156)
.+.++..|...+.+...... ....-+.+....+++|+-.+
T Consensus 44 ~~~e~~~L~~~l~eE~~~R~-~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELRT-KAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHHH-HHHHTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555554444 35555555555555555554
No 37
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=71.41 E-value=20 Score=24.08 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=3.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy16513 113 TINDLDVARKKLIIENSDLV 132 (156)
Q Consensus 113 ~~~el~~~~~~l~~E~~el~ 132 (156)
....+...+.+|+.|++.|.
T Consensus 85 ~Re~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 85 SREQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp HHHHHHTC------------
T ss_pred HHHHHHHHHHHHHhhccchh
Confidence 33444445555555555443
No 38
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=71.37 E-value=25 Score=25.07 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHH
Q psy16513 64 LRRDLEEANIQHESTLANLRKKHNDAVSEMGEQI 97 (156)
Q Consensus 64 l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~ 97 (156)
|...+++....+...+.+++.++...++++...+
T Consensus 104 L~~d~EelR~~l~p~~~el~~~l~~~~EelR~kl 137 (165)
T 1gs9_A 104 LGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRL 137 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444344444433
No 39
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=70.96 E-value=14 Score=21.97 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 114 INDLDVARKKLIIENSDLVRQLSKVTADARMWKIK 148 (156)
Q Consensus 114 ~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k 148 (156)
+.+|......|..++..|...+..+..++.+|+.-
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555666666777777777777777777544
No 40
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=69.82 E-value=36 Score=26.25 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHH
Q psy16513 74 QHESTLANLRKKHNDAVSEMGEQ 96 (156)
Q Consensus 74 ~~e~~~~~~k~k~~~~~~el~~q 96 (156)
.+......++.|+...++++...
T Consensus 96 ~L~p~~eelr~kl~~~veelk~~ 118 (273)
T 3s84_A 96 SLRPHADELKAKIDQNVEELKGR 118 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Confidence 33333344444444444444444
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=69.40 E-value=49 Score=27.61 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16513 8 LEEEVEVERQSRAKAEKQRADLARELEEL 36 (156)
Q Consensus 8 L~e~le~e~~~r~k~EK~k~~l~~Ele~l 36 (156)
+...+..++..-...++....+..+++..
T Consensus 461 ~~~~i~~l~~~~~~~~~~l~~~~~~i~~~ 489 (597)
T 3oja_B 461 LRAEVQQLTNEQIQQEQLLQGLHAEIDTN 489 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33333333333333333333444443333
No 42
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=68.03 E-value=31 Score=24.90 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy16513 9 EEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHE 76 (156)
Q Consensus 9 ~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e 76 (156)
.+|-...+.++.+.-.....+..++-+...+|..+......-....+.+-.++.+++.++......+.
T Consensus 70 ~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~ 137 (175)
T 3lay_A 70 TEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRD 137 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777888888888888888877654444344555677777777777766555444
No 43
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=67.42 E-value=23 Score=23.15 Aligned_cols=35 Identities=9% Similarity=0.213 Sum_probs=24.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHH
Q psy16513 16 RQSRAKAEKQRADLARELEELGERLEEAGGATSAQ 50 (156)
Q Consensus 16 ~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~ 50 (156)
-+.+.-++...++|..|+..|..++..+-......
T Consensus 39 arLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~a 73 (96)
T 1t3j_A 39 ARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNS 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36677777888888888888888776554444333
No 44
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=66.66 E-value=30 Score=24.22 Aligned_cols=34 Identities=12% Similarity=-0.005 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhh
Q psy16513 117 LDVARKKLIIENSDLVRQLS---KVTADARMWKIKYE 150 (156)
Q Consensus 117 l~~~~~~l~~E~~el~r~l~---e~e~~~~~~r~k~e 150 (156)
.......|..++..+...|. -.+...+++-.+|+
T Consensus 99 aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~ye 135 (147)
T 2b9c_A 99 SEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLE 135 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 34444455555544443333 33444677777777
No 45
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=66.51 E-value=27 Score=23.51 Aligned_cols=16 Identities=6% Similarity=0.277 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy16513 5 IYELEEEVEVERQSRA 20 (156)
Q Consensus 5 i~EL~e~le~e~~~r~ 20 (156)
...|.++|+.+...|.
T Consensus 15 ~~ql~~qL~k~~~~r~ 30 (112)
T 1x79_B 15 LRQANDQLEKTMKDKQ 30 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 46
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=64.82 E-value=31 Score=28.12 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy16513 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERL 40 (156)
Q Consensus 3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~l 40 (156)
+.|..+.+++..++.....++..-..+..++.++...+
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 40 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEIL 40 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777766666666666666666666555
No 47
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=63.77 E-value=36 Score=24.12 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHH
Q psy16513 28 DLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQID 98 (156)
Q Consensus 28 ~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~ 98 (156)
.|..++..+...|..+-..........-.++.++..|..++.++....+ ...-...++...+..+...+.
T Consensus 46 eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE-~AERsv~kLEk~id~lEd~L~ 115 (155)
T 2efr_A 46 ELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAE-FAERSVTKLEKSIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3445555444444443332222222333355555555555555555444 244445555555555555554
No 48
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=62.52 E-value=21 Score=20.93 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 114 INDLDVARKKLIIENSDLVRQLSKVTADARMWKIK 148 (156)
Q Consensus 114 ~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k 148 (156)
..+|......|..++..|...+..+..++.+|+..
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666777777777777777777777543
No 49
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=62.02 E-value=22 Score=21.10 Aligned_cols=35 Identities=17% Similarity=0.108 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 114 INDLDVARKKLIIENSDLVRQLSKVTADARMWKIK 148 (156)
Q Consensus 114 ~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k 148 (156)
..++......|..++.+|...++.+..++..|+.-
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666677777777777888888888777653
No 50
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=61.93 E-value=28 Score=22.14 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy16513 6 YELEEEVEVERQSRAKAEKQRADLARELEELGER 39 (156)
Q Consensus 6 ~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~ 39 (156)
..+.+++...+..-.+.++.+.+|......|..+
T Consensus 17 ~~~eeel~~lke~l~k~e~~rkele~~~~~l~~e 50 (89)
T 3bas_A 17 KEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQ 50 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433
No 51
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=61.31 E-value=45 Score=24.39 Aligned_cols=23 Identities=4% Similarity=0.088 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy16513 127 ENSDLVRQLSKVTADARMWKIKY 149 (156)
Q Consensus 127 E~~el~r~l~e~e~~~~~~r~k~ 149 (156)
....++..+.....-...|+.||
T Consensus 91 ~r~~l~~~l~~~~~L~~~~~~k~ 113 (192)
T 2p22_C 91 QKDKVQALLENARILESKYVASW 113 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444443
No 52
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=61.18 E-value=66 Score=26.22 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhH
Q psy16513 55 KKREAEMSKLRRDLEEANIQHE 76 (156)
Q Consensus 55 kk~E~el~~l~~~lee~~~~~e 76 (156)
+.+...+.+|+..|+...+.+.
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~ 84 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSK 84 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhh
Confidence 3344445555555555554444
No 53
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=60.05 E-value=32 Score=22.20 Aligned_cols=38 Identities=24% Similarity=0.192 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy16513 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEE 42 (156)
Q Consensus 5 i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~ 42 (156)
+.+|+.+...+..-...+-.+...+..|++.+...++.
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433
No 54
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=57.51 E-value=40 Score=22.57 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=12.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcC
Q psy16513 20 AKAEKQRADLARELEELGERLEEAGG 45 (156)
Q Consensus 20 ~k~EK~k~~l~~Ele~l~~~le~~~~ 45 (156)
.|....+++.......|..+|..+..
T Consensus 24 ~K~~~~~~e~~~~~~~Lq~El~~lr~ 49 (111)
T 2v66_B 24 EKLEHQYAQSYKQVSVLEDDLSQTRA 49 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455554444433
No 55
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=57.48 E-value=30 Score=21.15 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=10.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q psy16513 16 RQSRAKAEKQRADLARELEELGE 38 (156)
Q Consensus 16 ~~~r~k~EK~k~~l~~Ele~l~~ 38 (156)
+.+|.+=+..-.+|...+.+|..
T Consensus 21 RafReRK~~~i~~LE~~v~~le~ 43 (70)
T 1gd2_E 21 RAFRKRKEDHLKALETQVVTLKE 43 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 56
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=55.63 E-value=42 Score=22.19 Aligned_cols=63 Identities=21% Similarity=0.312 Sum_probs=32.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHH
Q psy16513 20 AKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQI 97 (156)
Q Consensus 20 ~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~ 97 (156)
+.+..+|+.|.=+++-|...|++ .+..+..+++.+.+-++.++. +--....+...+..+..++
T Consensus 19 AQLDNEKsal~YqVdlLKD~LEe--------------~eE~~aql~Re~~eK~re~e~-~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 19 AQLDNEKTNFMYQVDTLKDMLLE--------------LEEQLAESRRQYEEKNKEFER-EKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666644 344555556666665555552 3333333333444444444
No 57
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=55.49 E-value=44 Score=22.38 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHhcC
Q psy16513 29 LARELEELGERLEEAGG 45 (156)
Q Consensus 29 l~~Ele~l~~~le~~~~ 45 (156)
+..++.+|+.+|+.+..
T Consensus 18 ye~~I~~LR~qid~~~~ 34 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTN 34 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455555544433
No 58
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=54.23 E-value=28 Score=21.32 Aligned_cols=50 Identities=18% Similarity=0.347 Sum_probs=26.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 79 LANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMW 145 (156)
Q Consensus 79 ~~~~k~k~~~~~~el~~q~~~l~r~k~~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~ 145 (156)
...++.+-..-+.+|+.++..+ ......+..|+..|..++..+..++..+
T Consensus 20 QRafReRK~~~i~~LE~~v~~l-----------------e~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 20 QRAFRKRKEDHLKALETQVVTL-----------------KELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444445566666666543 2223335556666666666666655543
No 59
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=52.56 E-value=43 Score=21.38 Aligned_cols=35 Identities=11% Similarity=0.229 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513 116 DLDVARKKLIIENSDLVRQLSKVTADARMWKIKYE 150 (156)
Q Consensus 116 el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e 150 (156)
++......|+.++..|..++..+..++..+|.-|-
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777788888888888888888888876553
No 60
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=51.97 E-value=28 Score=19.08 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16513 53 LNKKREAEMSKLRRDLE 69 (156)
Q Consensus 53 ~~kk~E~el~~l~~~le 69 (156)
+..-++.+++.|+++++
T Consensus 32 liaylekeianlrkkie 48 (49)
T 3he5_A 32 LIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33345555655555543
No 61
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=51.91 E-value=73 Score=23.86 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=10.7
Q ss_pred HhhHHHHHHHHHhhHHHHHHHHHH
Q psy16513 73 IQHESTLANLRKKHNDAVSEMGEQ 96 (156)
Q Consensus 73 ~~~e~~~~~~k~k~~~~~~el~~q 96 (156)
..+.+....++.++...++++.+.
T Consensus 161 ~~l~P~~ee~r~kl~~~~~el~~~ 184 (243)
T 2a01_A 161 THLAPYSDELRQRLAARLEALKEN 184 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHh
Confidence 333334444444444444444443
No 62
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=50.89 E-value=53 Score=21.96 Aligned_cols=9 Identities=44% Similarity=0.822 Sum_probs=5.1
Q ss_pred HHHHHHHHH
Q psy16513 32 ELEELGERL 40 (156)
Q Consensus 32 Ele~l~~~l 40 (156)
+++.|..+|
T Consensus 25 ei~~L~~~L 33 (110)
T 2v4h_A 25 QLEDLRQQL 33 (110)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555555
No 63
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=49.12 E-value=64 Score=22.40 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q psy16513 28 DLARELEELGERL 40 (156)
Q Consensus 28 ~l~~Ele~l~~~l 40 (156)
+|..++++|..++
T Consensus 15 ~L~~D~~s~~~el 27 (167)
T 4gkw_A 15 DLKQDTESLQKQL 27 (167)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 64
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=48.31 E-value=28 Score=20.46 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 116 DLDVARKKLIIENSDLVRQLSKVTADARMWK 146 (156)
Q Consensus 116 el~~~~~~l~~E~~el~r~l~e~e~~~~~~r 146 (156)
+|......|..++..|...+..+..++.+++
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555566666666665555543
No 65
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=47.83 E-value=28 Score=20.44 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16513 5 IYELEEEVEVERQSRAKAEK 24 (156)
Q Consensus 5 i~EL~e~le~e~~~r~k~EK 24 (156)
+.+|+..++.+......+..
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~ 43 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELAS 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555544443333333
No 66
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=45.80 E-value=50 Score=20.27 Aligned_cols=41 Identities=15% Similarity=0.257 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcCCCC
Q psy16513 116 DLDVARKKLIIENSDLVRQLSKVTADARMWK-IKYETNKPKD 156 (156)
Q Consensus 116 el~~~~~~l~~E~~el~r~l~e~e~~~~~~r-~k~e~~~~~~ 156 (156)
.+...+..+..+.+.+.--+..++..++-.. ++|=.++|+|
T Consensus 12 ~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~ag~ip~AP~D 53 (74)
T 1avy_A 12 AIETDIASVRQEVNTAKGNISSLQGDVQALQEAGYIPEAPRD 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCS
T ss_pred ccccchhhhheeeccccchhhhhhhhhHHHHhcCCCCCCCCC
Confidence 4555666666777777777888888887775 7888888886
No 67
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=45.78 E-value=77 Score=23.89 Aligned_cols=45 Identities=20% Similarity=0.300 Sum_probs=34.6
Q ss_pred HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513 106 KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYE 150 (156)
Q Consensus 106 ~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e 150 (156)
++..++..+..+...+.+.+.|...+..++.....++++.|--|.
T Consensus 172 R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~ 216 (228)
T 3q0x_A 172 RLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYD 216 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556666778888888888888888888888888877776664
No 68
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=45.44 E-value=44 Score=19.46 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16513 5 IYELEEEVEVERQSRAKAEKQRADLARELEEL 36 (156)
Q Consensus 5 i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l 36 (156)
+.+|+..++.+...-..+...-..|..|+..|
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555444443333333333333333333
No 69
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=42.77 E-value=59 Score=20.16 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=30.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhcC
Q psy16513 110 ANRTINDLDVARKKLIIENSD----LVRQLSKVTADARMWKIKYETNK 153 (156)
Q Consensus 110 ~~r~~~el~~~~~~l~~E~~e----l~r~l~e~e~~~~~~r~k~e~~~ 153 (156)
+...+.-|.+.+++|-.|+.. |.+-+..++..+..|+-.+.+++
T Consensus 12 LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~~~~~~s~~ 59 (74)
T 3swf_A 12 MESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKPLIDTEFSAI 59 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhhc
Confidence 344666677777777777753 44667778888888877665444
No 70
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=42.59 E-value=68 Score=20.83 Aligned_cols=76 Identities=14% Similarity=0.196 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy16513 53 LNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLIIENSDLV 132 (156)
Q Consensus 53 ~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~r~k~~lee~~r~~~el~~~~~~l~~E~~el~ 132 (156)
.++++...+.+++..++......+. +.-|+.=+... -++.. ..-....+.+....+..|..+.--++
T Consensus 16 RkkkL~~Ki~el~~ei~ke~~~reg-l~Km~~vY~~n-----P~~GD-------~~s~~~~L~e~~~kid~L~~el~K~q 82 (98)
T 2ke4_A 16 QRKRLQQQLEERSRELQKEVDQREA-LKKMKDVYEKT-----PQMGD-------PASLEPQIAETLSNIERLKLEVQKYE 82 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTH-HHHHHHHHHHC-----GGGCC-------GGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcC-----CccCC-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777766663 44444322210 00000 00112256666777777777777777
Q ss_pred HHHHHHHHH
Q psy16513 133 RQLSKVTAD 141 (156)
Q Consensus 133 r~l~e~e~~ 141 (156)
..|.+++..
T Consensus 83 ~~L~e~e~~ 91 (98)
T 2ke4_A 83 AWLAEAESR 91 (98)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 777776543
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=42.34 E-value=1.4e+02 Score=24.26 Aligned_cols=40 Identities=13% Similarity=0.037 Sum_probs=25.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513 111 NRTINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYE 150 (156)
Q Consensus 111 ~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e 150 (156)
++..........++..++..+.+.+.+....+...+.+|-
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 434 IRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHH
Confidence 3344445555666666666677777777777777766665
No 72
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=42.19 E-value=67 Score=20.69 Aligned_cols=61 Identities=30% Similarity=0.358 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy16513 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHE 76 (156)
Q Consensus 2 ~~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e 76 (156)
.+++.-|+.-|+.++-.+--+=|++.+|..=+..+..+- ..++..+.+++.++++.-+..+
T Consensus 3 an~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~--------------~~R~~~i~el~akidd~Lk~l~ 63 (101)
T 1d7m_A 3 ANRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEG--------------AEREKRLRELEAKLDETLKNLE 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHccc
Confidence 356677788888888888888888777766666555432 2355566667777777666665
No 73
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=42.02 E-value=1.4e+02 Score=24.15 Aligned_cols=97 Identities=18% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHh
Q psy16513 33 LEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANR 112 (156)
Q Consensus 33 le~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~r~k~~lee~~r 112 (156)
++++...++.+.+......+...... .|++++++...++. .+...-.--+..+--|...++.
T Consensus 375 l~~~~~~i~~~l~~~~~~~e~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------- 436 (471)
T 3mq9_A 375 LKDAQTRITAARDGLRAVMEARNVTH----LLQQELTEAQKGFQ-DVEAQAATANHTVMALMASLDA------------- 436 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHhhHHHHHhhhHHH----HHHHHHHHHhhhHH-HHHHHhhhcchhHHHHHHHHHH-------------
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 113 TINDLDVARKKLIIENSDLVRQLSKVTADARMWKI 147 (156)
Q Consensus 113 ~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~ 147 (156)
.+.--...+..++.+...+..+|.++.+++-..|+
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (471)
T 3mq9_A 437 EKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 471 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 74
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=41.58 E-value=49 Score=18.93 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q psy16513 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEA 43 (156)
Q Consensus 5 i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~ 43 (156)
+.+|..++..+-.--.++.........++..|..+|+.+
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555665555555556666666666666666666544
No 75
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=40.98 E-value=64 Score=20.08 Aligned_cols=34 Identities=12% Similarity=0.224 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16513 116 DLDVARKKLIIENSDLVRQLSKVTADARMWKIKY 149 (156)
Q Consensus 116 el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~ 149 (156)
++......|..++..|...+..+..++..+|.-+
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677788888888888888888888887544
No 76
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=40.31 E-value=67 Score=20.10 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy16513 51 IELNKKREAEMSKLRRDLEEANIQHE 76 (156)
Q Consensus 51 ~~~~kk~E~el~~l~~~lee~~~~~e 76 (156)
.++++++-..+...+..++...+..+
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~ 35 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEE 35 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444444444444444444444333
No 77
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=40.24 E-value=52 Score=18.86 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 123 KLIIENSDLVRQLSKVTADARMWKIK 148 (156)
Q Consensus 123 ~l~~E~~el~r~l~e~e~~~~~~r~k 148 (156)
.|..|+.+|...+..+..++...+++
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 78
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=40.07 E-value=64 Score=19.86 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy16513 130 DLVRQLSKVTADARMW 145 (156)
Q Consensus 130 el~r~l~e~e~~~~~~ 145 (156)
++...|.+.+..+...
T Consensus 44 eLEk~L~ekd~eI~~L 59 (72)
T 3nmd_A 44 ELELELDQKDELIQML 59 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 79
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=39.70 E-value=69 Score=20.13 Aligned_cols=32 Identities=9% Similarity=0.002 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 114 INDLDVARKKLIIENSDLVRQLSKVTADARMW 145 (156)
Q Consensus 114 ~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~ 145 (156)
+.++..++..|+.|...|.-++++...++.++
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33455555555555555555555555554444
No 80
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=39.61 E-value=80 Score=20.79 Aligned_cols=34 Identities=24% Similarity=0.477 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16513 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELG 37 (156)
Q Consensus 4 ~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~ 37 (156)
...+..-+|...+.+..-+++.+..|...+..+.
T Consensus 9 K~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 9 KNAEVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777777777777666
No 81
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=39.53 E-value=54 Score=18.79 Aligned_cols=17 Identities=29% Similarity=0.200 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy16513 113 TINDLDVARKKLIIENS 129 (156)
Q Consensus 113 ~~~el~~~~~~l~~E~~ 129 (156)
.+.+-.+++.+|++|-.
T Consensus 25 EL~dNS~~lskLE~ets 41 (54)
T 1deb_A 25 ELEDNSNHLTKLETEAS 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHhhhh
Confidence 34444444444444433
No 82
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=38.17 E-value=61 Score=19.03 Aligned_cols=14 Identities=14% Similarity=0.138 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q psy16513 5 IYELEEEVEVERQS 18 (156)
Q Consensus 5 i~EL~e~le~e~~~ 18 (156)
+.+|+..++.+...
T Consensus 25 ~~~Le~~v~~L~~~ 38 (63)
T 2wt7_A 25 TDTLQAETDQLEDE 38 (63)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44445544444333
No 83
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=37.49 E-value=1.2e+02 Score=22.12 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=10.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHH
Q psy16513 79 LANLRKKHNDAVSEMGEQIDQ 99 (156)
Q Consensus 79 ~~~~k~k~~~~~~el~~q~~~ 99 (156)
...++.+++..+.+..+..+.
T Consensus 126 p~~L~~~L~~a~~e~eeeS~~ 146 (192)
T 2p22_C 126 DIALKKKLEQNTKKLDEESSQ 146 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555443
No 84
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=37.18 E-value=1.5e+02 Score=24.04 Aligned_cols=36 Identities=31% Similarity=0.220 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy16513 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERL 40 (156)
Q Consensus 5 i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~l 40 (156)
...|+++|..++.....++.....+..++..+..+|
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666665555554
No 85
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=36.66 E-value=1.2e+02 Score=21.90 Aligned_cols=10 Identities=10% Similarity=0.165 Sum_probs=4.0
Q ss_pred hHHHHhhHHH
Q psy16513 107 LDEANRTIND 116 (156)
Q Consensus 107 lee~~r~~~e 116 (156)
+++++..+.-
T Consensus 130 ~Eelr~~L~P 139 (191)
T 1nfn_A 130 TEELRVRLAS 139 (191)
T ss_dssp CHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 3344443333
No 86
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=36.14 E-value=64 Score=21.48 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 116 DLDVARKKLIIENSDLVRQLSKVTADARMWKI 147 (156)
Q Consensus 116 el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~ 147 (156)
++.....+...++..|...+..++.++..||.
T Consensus 86 ~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R~ 117 (117)
T 3kin_B 86 EWKKKYEKEKEKNKALKSVIQHLEVELNRWRN 117 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45556666777778888889999999999973
No 87
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=35.81 E-value=24 Score=24.82 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy16513 6 YELEEEVEVERQSRAKAEKQRADLARELEELGERLEE 42 (156)
Q Consensus 6 ~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~ 42 (156)
..+..+++..+..+..++.....+..++..|..++..
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aK 105 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAK 105 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHH
Confidence 4445555666666666666555555555555555433
No 88
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=35.80 E-value=1e+02 Score=20.80 Aligned_cols=43 Identities=26% Similarity=0.350 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 27 ADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN 72 (156)
Q Consensus 27 ~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~ 72 (156)
..|.+|++.|+.+|+.+ ..........+...++.|...+++..
T Consensus 18 e~Lkreie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 18 ERLYREISGLKAQLENM---KTESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777777777766 44444455666666666666666655
No 89
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=35.64 E-value=1.1e+02 Score=21.08 Aligned_cols=12 Identities=17% Similarity=0.351 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q psy16513 28 DLARELEELGER 39 (156)
Q Consensus 28 ~l~~Ele~l~~~ 39 (156)
++..|+.+|..+
T Consensus 86 ~~~kE~~~lK~e 97 (138)
T 3hnw_A 86 NKDKEIYDLKHE 97 (138)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 90
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=35.02 E-value=75 Score=19.14 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=6.9
Q ss_pred HHHHhHHHHhhHHHHHH
Q psy16513 103 LKTKLDEANRTINDLDV 119 (156)
Q Consensus 103 ~k~~lee~~r~~~el~~ 119 (156)
.+..+.++++.+..|..
T Consensus 54 ~k~Ei~elrr~iq~L~~ 70 (77)
T 3trt_A 54 AKQESTEYRRQVQSLTM 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444333
No 91
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=34.38 E-value=1.4e+02 Score=22.18 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=14.8
Q ss_pred HHHHHHHHhhHHHHHHHHHhhHHHHHHHHHH
Q psy16513 66 RDLEEANIQHESTLANLRKKHNDAVSEMGEQ 96 (156)
Q Consensus 66 ~~lee~~~~~e~~~~~~k~k~~~~~~el~~q 96 (156)
..+++....+.+....++.++...++++..+
T Consensus 110 ~~~eelr~~L~P~~eel~~~~~~~~eel~~~ 140 (243)
T 2a01_A 110 EEMELYRQKVEPLRAELQEGARQKLHELQEK 140 (243)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3444444455555555555555444444333
No 92
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=33.98 E-value=92 Score=19.86 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=10.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Q psy16513 111 NRTINDLDVARKKLIIENSDLVR 133 (156)
Q Consensus 111 ~r~~~el~~~~~~l~~E~~el~r 133 (156)
.+.+..+.....++..+++.++.
T Consensus 62 r~~i~~~~~ek~~l~~e~dnl~~ 84 (93)
T 3s4r_A 62 RRQVDQLTNDKARVEVERDNLAE 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555444433
No 93
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=33.43 E-value=96 Score=19.92 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513 113 TINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYE 150 (156)
Q Consensus 113 ~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e 150 (156)
.+..|...+..+..+...|..++......+..|+.++.
T Consensus 71 a~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 71 AVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777777888888888888888876654
No 94
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=33.32 E-value=73 Score=18.82 Aligned_cols=12 Identities=0% Similarity=0.484 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q psy16513 88 DAVSEMGEQIDQ 99 (156)
Q Consensus 88 ~~~~el~~q~~~ 99 (156)
..+.+|..++..
T Consensus 30 ~~~~~Le~~v~~ 41 (63)
T 2dgc_A 30 QRMKQLEDKVEE 41 (63)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 95
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=33.21 E-value=1.3e+02 Score=21.34 Aligned_cols=18 Identities=22% Similarity=0.591 Sum_probs=10.3
Q ss_pred HhHHHHHHHHHHHHHHHH
Q psy16513 24 KQRADLARELEELGERLE 41 (156)
Q Consensus 24 K~k~~l~~Ele~l~~~le 41 (156)
.-+..|..++++++..|.
T Consensus 82 ~Lr~~l~kdlee~r~~l~ 99 (185)
T 3r2p_A 82 GLRQEMSKDLEEVKAKVQ 99 (185)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHH
Confidence 335556666666666653
No 96
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=32.73 E-value=77 Score=18.62 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16513 5 IYELEEEVEVERQSRAKAEKQRADLARELEEL 36 (156)
Q Consensus 5 i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l 36 (156)
+.+|+..++.+..-...+...-..|..|+..|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433333333333333333333333
No 97
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=32.55 E-value=1.2e+02 Score=20.93 Aligned_cols=75 Identities=27% Similarity=0.359 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy16513 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLR 83 (156)
Q Consensus 4 ~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k 83 (156)
.|.+|+.+++++++ +--+...||+-+-.=|.+-.+..-...+.+--...++..|+..+.-..++++. ...+.
T Consensus 12 ~ia~L~~D~~s~~~-------eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K-~~~~L 83 (167)
T 4gkw_A 12 EVADLKQDTESLQK-------QLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEK-ADQLL 83 (167)
T ss_dssp SHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHH-HHHHH
Confidence 46778888875443 22233344444443343333333222222233667888898888888888885 44444
Q ss_pred Hhh
Q psy16513 84 KKH 86 (156)
Q Consensus 84 ~k~ 86 (156)
++.
T Consensus 84 krn 86 (167)
T 4gkw_A 84 KRN 86 (167)
T ss_dssp HHH
T ss_pred Hhh
Confidence 443
No 98
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=32.32 E-value=31 Score=19.91 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16513 117 LDVARKKLIIENSDLVRQLSKV 138 (156)
Q Consensus 117 l~~~~~~l~~E~~el~r~l~e~ 138 (156)
|...+..|..++..|..++..+
T Consensus 27 LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 27 LENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444544444444443
No 99
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=31.90 E-value=1.4e+02 Score=21.19 Aligned_cols=42 Identities=12% Similarity=0.262 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy16513 60 EMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLN 101 (156)
Q Consensus 60 el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~ 101 (156)
++.++++.+.+.....+..+..++.++...+..+...+..+.
T Consensus 24 ~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~l~ 65 (171)
T 2p2u_A 24 EIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELE 65 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777777777777777765543
No 100
>1aa0_A Fibritin, gpwac E; bacteriophage T4, structural protein, bacteriophag assembly, attachment protein; 2.20A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=31.81 E-value=1.1e+02 Score=20.18 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcCCCC
Q psy16513 116 DLDVARKKLIIENSDLVRQLSKVTADARMWK-IKYETNKPKD 156 (156)
Q Consensus 116 el~~~~~~l~~E~~el~r~l~e~e~~~~~~r-~k~e~~~~~~ 156 (156)
.+...+..+..+.+.+.--+.+++..++-.. ++|=.++|+|
T Consensus 54 ~~et~i~~~t~~v~t~k~~i~~~e~~vqalq~ag~i~~AP~D 95 (113)
T 1aa0_A 54 ANETNIASVTQEVNTAKGNISSLQGDVQALQEAGYIPEAPRD 95 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCS
T ss_pred ccccchhhhheeecccccchhhhhhhhHHHHhcCCCCCCCCC
Confidence 3555555666677777777888888888876 7899999987
No 101
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=30.62 E-value=1.1e+02 Score=19.71 Aligned_cols=49 Identities=22% Similarity=0.230 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513 27 ADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQH 75 (156)
Q Consensus 27 ~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~ 75 (156)
.-|..+.+......+.+....-.....+.+.+.++..|++++.-+...+
T Consensus 12 ~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~el 60 (101)
T 3u1c_A 12 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSR 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544444444555556666666666555443333
No 102
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=30.53 E-value=16 Score=20.52 Aligned_cols=28 Identities=21% Similarity=0.151 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513 123 KLIIENSDLVRQLSKVTADARMWKIKYE 150 (156)
Q Consensus 123 ~l~~E~~el~r~l~e~e~~~~~~r~k~e 150 (156)
++++|+++..-.-+-++.+++.+|+|.-
T Consensus 3 KlQrELeEa~Erae~ae~~vnkLR~k~R 30 (45)
T 3zwh_Q 3 KLQRELEDATETADAMNREVSSLKNKLR 30 (45)
T ss_dssp SSSSHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666666666777777888877753
No 103
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=30.15 E-value=1e+02 Score=19.14 Aligned_cols=16 Identities=6% Similarity=0.154 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhhhc
Q psy16513 137 KVTADARMWKIKYETN 152 (156)
Q Consensus 137 e~e~~~~~~r~k~e~~ 152 (156)
.++.+++.||+=.|++
T Consensus 65 ~Ld~EIatYRkLLEGE 80 (84)
T 1gk4_A 65 ALDIEIATYRKLLEGE 80 (84)
T ss_dssp HHHHHHHHHHHHHTC-
T ss_pred hhHHHHHHHHHHHcCC
Confidence 3455566666555543
No 104
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=30.00 E-value=2.4e+02 Score=23.47 Aligned_cols=38 Identities=13% Similarity=0.252 Sum_probs=18.0
Q ss_pred HhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH
Q psy16513 24 KQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61 (156)
Q Consensus 24 K~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el 61 (156)
+....+...|.+|...|+.+...+.....+...+...+
T Consensus 93 k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~sl 130 (464)
T 1m1j_B 93 KQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKL 130 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 33344555555555555555444444444443333333
No 105
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=29.81 E-value=1.4e+02 Score=20.50 Aligned_cols=91 Identities=23% Similarity=0.256 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHH----H
Q psy16513 29 LARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKL----K 104 (156)
Q Consensus 29 l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~~~~el~~q~~~l~r~----k 104 (156)
|..||-.-.+.|+.+..-+...++.|+..+..+..+...+++....+.. .+.-|.=|+.++.-. .
T Consensus 7 L~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~-----------~~d~L~lQ~esmeaalkmEr 75 (130)
T 3cl3_D 7 SLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSV-----------QVDQLRMQGQSVEAALRMER 75 (130)
T ss_dssp --------------------------------------------CTTTH-----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666666666666666666555554444443 333333333322211 1
Q ss_pred HHhHHHHhhHHHHHHHHHHHHHHHHH
Q psy16513 105 TKLDEANRTINDLDVARKKLIIENSD 130 (156)
Q Consensus 105 ~~lee~~r~~~el~~~~~~l~~E~~e 130 (156)
....+-++.+..|..+...|-.|+++
T Consensus 76 ~~~~eEKrkLAqLQ~AY~~LfqeYd~ 101 (130)
T 3cl3_D 76 QAASEEKRKLAQLQVAYHQLFQEYDN 101 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 15566677788888888888888775
No 106
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=29.61 E-value=1.1e+02 Score=19.19 Aligned_cols=14 Identities=7% Similarity=0.192 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHhhh
Q psy16513 138 VTADARMWKIKYET 151 (156)
Q Consensus 138 ~e~~~~~~r~k~e~ 151 (156)
++.+++.||+=.|+
T Consensus 68 Le~EIatYRkLLEG 81 (86)
T 1x8y_A 68 LDMEIHAYRKLLEG 81 (86)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcC
Confidence 34445555544443
No 107
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=26.94 E-value=1.3e+02 Score=22.97 Aligned_cols=9 Identities=22% Similarity=0.523 Sum_probs=3.6
Q ss_pred HHHHHHHHh
Q psy16513 35 ELGERLEEA 43 (156)
Q Consensus 35 ~l~~~le~~ 43 (156)
.|..++..+
T Consensus 58 eL~~ql~~L 66 (251)
T 3m9b_A 58 QLEARIDSL 66 (251)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444333
No 108
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=26.56 E-value=1.4e+02 Score=19.69 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=25.4
Q ss_pred HHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 104 KTKLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMW 145 (156)
Q Consensus 104 k~~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~ 145 (156)
+.++.++...+.++......|+.|.+=.=.-|-+.+--++..
T Consensus 17 ~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~ 58 (106)
T 4e61_A 17 QETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTT 58 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556666777777777777777765544455555555443
No 109
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=25.91 E-value=1.2e+02 Score=18.82 Aligned_cols=12 Identities=8% Similarity=0.315 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q psy16513 89 AVSEMGEQIDQL 100 (156)
Q Consensus 89 ~~~el~~q~~~l 100 (156)
.+......++.|
T Consensus 19 ~~~q~qaEl~sL 30 (78)
T 3iv1_A 19 EMDRAQAELNAL 30 (78)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHhHHHHHH
Confidence 333333333333
No 110
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=25.50 E-value=1.2e+02 Score=18.55 Aligned_cols=50 Identities=24% Similarity=0.249 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy16513 27 ADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHE 76 (156)
Q Consensus 27 ~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e 76 (156)
..|..+.+.....++.+....-.......+.+.++..|++++.-....++
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld 58 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELD 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555444444444444555555555555544444444
No 111
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=25.02 E-value=1.3e+02 Score=18.59 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16513 48 SAQIELNKKREAEMSKLRRDLE 69 (156)
Q Consensus 48 ~~~~~~~kk~E~el~~l~~~le 69 (156)
..+....-++..++..|..++.
T Consensus 38 ~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 38 ADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444333
No 112
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=25.01 E-value=1.3e+02 Score=18.83 Aligned_cols=42 Identities=14% Similarity=0.285 Sum_probs=21.2
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 107 LDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMWKIK 148 (156)
Q Consensus 107 lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k 148 (156)
+++++..-..+......+......|.+....+..+.+.|..+
T Consensus 29 ieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~R 70 (81)
T 2jee_A 29 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444445555555555566666544
No 113
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=24.88 E-value=1.3e+02 Score=18.79 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHh
Q psy16513 60 EMSKLRRDLEEANIQ 74 (156)
Q Consensus 60 el~~l~~~lee~~~~ 74 (156)
++..|+-.+|+....
T Consensus 35 Ev~~LRGqiE~~~~~ 49 (83)
T 2xdj_A 35 DIDSLRGQIQENQYQ 49 (83)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHH
Confidence 344444444444433
No 114
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=23.96 E-value=1.1e+02 Score=17.64 Aligned_cols=17 Identities=6% Similarity=0.169 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhhhcC
Q psy16513 137 KVTADARMWKIKYETNK 153 (156)
Q Consensus 137 e~e~~~~~~r~k~e~~~ 153 (156)
.++.+++.||+=.|++.
T Consensus 39 ~Le~EIatYRkLLEgEe 55 (59)
T 1gk6_A 39 ALDIEIATYRKLLEGEE 55 (59)
T ss_dssp HHHHHHHHHHHHHHCCC
T ss_pred HhHHHHHHHHHHHccCc
Confidence 45667777777666553
No 115
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=23.52 E-value=1.4e+02 Score=18.69 Aligned_cols=44 Identities=18% Similarity=0.156 Sum_probs=30.0
Q ss_pred HhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16513 106 KLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKY 149 (156)
Q Consensus 106 ~lee~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~ 149 (156)
+++++.....-....+.....|+..|+++|...++++.-|....
T Consensus 34 kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 34 KVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44444444444555666666888889999999888888776543
No 116
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=23.24 E-value=1.6e+02 Score=19.55 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 113 TINDLDVARKKLIIENSDLVRQLSK 137 (156)
Q Consensus 113 ~~~el~~~~~~l~~E~~el~r~l~e 137 (156)
..++|...+.+|+-||..|-+++..
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677888888999998888888863
No 117
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=22.96 E-value=1.5e+02 Score=18.65 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16513 113 TINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYE 150 (156)
Q Consensus 113 ~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~r~k~e 150 (156)
....+...+..+..+...+..++...+..+..|+.++-
T Consensus 66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 66 LTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45557777777778888888888888888888877654
No 118
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=22.95 E-value=1.2e+02 Score=23.25 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=18.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 110 ANRTINDLDVARKKLIIENSDLVRQLSKVTADARMW 145 (156)
Q Consensus 110 ~~r~~~el~~~~~~l~~E~~el~r~l~e~e~~~~~~ 145 (156)
+.+.+..+..+..+|...+.++.+++..+..++...
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444455555555555555555555555444
No 119
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=22.47 E-value=1.9e+02 Score=19.75 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 113 TINDLDVARKKLIIENSDLVRQLSKVTADA 142 (156)
Q Consensus 113 ~~~el~~~~~~l~~E~~el~r~l~e~e~~~ 142 (156)
.+.++...+..+..++.+|++++-++++.+
T Consensus 104 k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 104 KAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555544
No 120
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=22.43 E-value=1.6e+02 Score=18.80 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 27 ADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEAN 72 (156)
Q Consensus 27 ~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~ 72 (156)
.-|..+.+......+.+....-.....+.+.+.++..|++++.-+.
T Consensus 12 ~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE 57 (101)
T 3u59_A 12 QMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTE 57 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3455555555555555544444444445555555555555554333
No 121
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=21.70 E-value=1.2e+02 Score=17.31 Aligned_cols=27 Identities=4% Similarity=0.188 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16513 113 TINDLDVARKKLIIENSDLVRQLSKVT 139 (156)
Q Consensus 113 ~~~el~~~~~~l~~E~~el~r~l~e~e 139 (156)
-+..+......+..++.+|...+..++
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555554443
No 122
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=21.16 E-value=1.8e+02 Score=19.07 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCc
Q psy16513 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGA 46 (156)
Q Consensus 3 ~~i~EL~e~le~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~ 46 (156)
..+.+|-+.|..+-.-|.-+|..-..-.-|+.+|...+.++++.
T Consensus 49 e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dlgKf 92 (107)
T 1ytz_T 49 DKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQAQKH 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHhcCc
Confidence 44556666665555555555555444556777777777777544
No 123
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=21.13 E-value=90 Score=19.37 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=5.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHh
Q psy16513 19 RAKAEKQRADLARELEELGERLEEA 43 (156)
Q Consensus 19 r~k~EK~k~~l~~Ele~l~~~le~~ 43 (156)
+.++++.-.++..-+-.|..+|+..
T Consensus 7 k~~Le~~~~e~k~kv~~LQ~eLdts 31 (79)
T 1tu3_F 7 KATVEQLMFEEKNKAQRLQTELDVS 31 (79)
T ss_dssp --------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555433
No 124
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=20.74 E-value=1.9e+02 Score=19.01 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHh
Q psy16513 31 RELEELGERLEEA 43 (156)
Q Consensus 31 ~Ele~l~~~le~~ 43 (156)
-|+.+|...+.++
T Consensus 77 yEI~eL~~rV~dl 89 (106)
T 1j1d_B 77 YEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444444
No 125
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=20.20 E-value=1.8e+02 Score=18.69 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHH
Q psy16513 13 EVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHND 88 (156)
Q Consensus 13 e~e~~~r~k~EK~k~~l~~Ele~l~~~le~~~~~~~~~~~~~kk~E~el~~l~~~lee~~~~~e~~~~~~k~k~~~ 88 (156)
+.++..-.-+++=...|..++..|...+..+. + =+...+.+++..+.++...+..-.-.....+.-++.+...
T Consensus 9 eElr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~-s--WqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~v 81 (94)
T 3fx7_A 9 EEVREFVGHLERFKELLREEVNSLSNHFHNLE-S--WRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRV 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-S--CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-h--HhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHH
Confidence 34456666777778899999999999999994 3 4445778888888887777766666656566666665543
Done!