RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16513
(156 letters)
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 68.7 bits (168), Expect = 2e-14
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
+++ I +L+E++E E+ +R KAEKQ+ DL+ ELE L LE+ T+ Q EL +
Sbjct: 1121 LESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKD 1180
Query: 61 MS 62
Sbjct: 1181 DD 1182
Score = 54.8 bits (132), Expect = 1e-09
Identities = 28/137 (20%), Positives = 70/137 (51%), Gaps = 11/137 (8%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
MQ ++ +LEE++E E +R K + ++ +++++ + I + + + +
Sbjct: 953 MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMED-----------DILIMEDQNNK 1001
Query: 61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVA 120
++K R+ LEE + LA +K + + +++L+ +L + ++ +L+
Sbjct: 1002 LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI 1061
Query: 121 RKKLIIENSDLVRQLSK 137
++KL E+SDL Q+++
Sbjct: 1062 KRKLEGESSDLHEQIAE 1078
Score = 47.9 bits (114), Expect = 3e-07
Identities = 27/154 (17%), Positives = 56/154 (36%), Gaps = 17/154 (11%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
+Q ++ E + R + ++ +L L E+ R+EE + KK + +
Sbjct: 897 LQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ 956
Query: 61 MSKL----------RRDLEEANIQHESTLANLR-------KKHNDAVSEMGEQIDQLNKL 103
M L R+ L+ + + + + ++N E ++++ L
Sbjct: 957 MLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDL 1016
Query: 104 KTKLDEANRTINDLDVARKKLIIENSDLVRQLSK 137
T L E +L + K S+L +L K
Sbjct: 1017 TTNLAEEEEKAKNLTKLKNKHESMISELEVRLKK 1050
Score = 47.5 bits (113), Expect = 3e-07
Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 10/151 (6%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
++ R+ +L + E + K + + EL RL++ + ++ +K E E
Sbjct: 1009 LEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE 1068
Query: 61 MSKLRR----------DLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEA 110
S L +L+ + E L + D S+ + ++ +L++ + +
Sbjct: 1069 SSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDL 1128
Query: 111 NRTINDLDVARKKLIIENSDLVRQLSKVTAD 141
+ AR K + DL +L + +
Sbjct: 1129 QEDLESEKAARNKAEKQKRDLSEELEALKTE 1159
Score = 47.1 bits (112), Expect = 5e-07
Identities = 29/150 (19%), Positives = 63/150 (42%), Gaps = 10/150 (6%)
Query: 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61
+I ++E+++ + K K+R L + +L L E +L K E+ +
Sbjct: 982 DGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMI 1041
Query: 62 S----------KLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEAN 111
S K R++LE+ + E ++L ++ + +++ E QL K + +L A
Sbjct: 1042 SELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAAL 1101
Query: 112 RTINDLDVARKKLIIENSDLVRQLSKVTAD 141
+ D + + + +L +S + D
Sbjct: 1102 ARLEDETSQKNNALKKIRELESHISDLQED 1131
Score = 46.8 bits (111), Expect = 7e-07
Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 12/147 (8%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
++ I ELE ++ E +SR + EK + L E +L E++ E + K+E E
Sbjct: 1037 HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEE 1096
Query: 61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQID-----------QLNKLKTKLDE 109
+ LE+ Q + ++ +S++ E ++ Q L +L+
Sbjct: 1097 LQAALARLEDETSQK-NNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEA 1155
Query: 110 ANRTINDLDVARKKLIIENSDLVRQLS 136
+ D +
Sbjct: 1156 LKTELEDTLDTTATQQELRGSDYKDDD 1182
Score = 46.4 bits (110), Expect = 9e-07
Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 4/136 (2%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
+ L+E+++ E + A+AE+ R LA + +EL E L E A+IE ++R +
Sbjct: 890 LCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEM----EARIEEEEERSQQ 945
Query: 61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVA 120
+ ++ +++ + E L E ++ K++ + N L
Sbjct: 946 LQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKE 1005
Query: 121 RKKLIIENSDLVRQLS 136
RK L SDL L+
Sbjct: 1006 RKLLEERVSDLTTNLA 1021
Score = 42.5 bits (100), Expect = 2e-05
Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 10/147 (6%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLAR----------ELEELGERLEEAGGATSAQ 50
+ + E EE+ + + + K E ++L ELE++ +LE Q
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075
Query: 51 IELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEA 110
I + + AE+ EE + L + + N+A+ ++ E ++ L+ L+
Sbjct: 1076 IAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESE 1135
Query: 111 NRTINDLDVARKKLIIENSDLVRQLSK 137
N + ++ L E L +L
Sbjct: 1136 KAARNKAEKQKRDLSEELEALKTELED 1162
Score = 39.4 bits (92), Expect = 3e-04
Identities = 18/138 (13%), Positives = 51/138 (36%), Gaps = 4/138 (2%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
+ +E + + E++ L E L E+L+ A + ++
Sbjct: 862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ----AETELYAEAEEMRVR 917
Query: 61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVA 120
++ +++LEE + E+ + ++ +E + Q+ L+ +L+E L +
Sbjct: 918 LAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLE 977
Query: 121 RKKLIIENSDLVRQLSKV 138
+ + + + +
Sbjct: 978 KVTADGKIKKMEDDILIM 995
Score = 31.3 bits (71), Expect = 0.12
Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 17/112 (15%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELG---ERLEEAGGATSAQIELNKKR 57
++A++ + EEE++ Q+ + +++ EL L+E +E K
Sbjct: 1086 LKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQE-------DLESEKAA 1138
Query: 58 EAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDE 109
+ K +RDL E L L+ + D + Q + D+
Sbjct: 1139 RNKAEKQKRDLSE-------ELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 57.8 bits (140), Expect = 1e-10
Identities = 29/150 (19%), Positives = 62/150 (41%), Gaps = 2/150 (1%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
+Q +I E +E + + E + +L ERL + + E
Sbjct: 933 LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEE 992
Query: 61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVA 120
++KLR++L + + ++ K ++ + E +Q LKT+ +E NR I+D
Sbjct: 993 IAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKE 1052
Query: 121 RKKLIIENSDLVRQLSKVTADARMWKIKYE 150
+ + LV + ++ D +++Y+
Sbjct: 1053 ITETM--EKKLVEETKQLELDLNDERLRYQ 1080
Score = 49.3 bits (118), Expect = 8e-08
Identities = 23/145 (15%), Positives = 57/145 (39%), Gaps = 10/145 (6%)
Query: 9 EEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDL 68
+++++E +S + +K L ++ +L +++E Q + K +M+ L
Sbjct: 906 LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDE-------QNKEYKSLLEKMNNLEITY 958
Query: 69 EEANIQHESTLANLRKKHND---AVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLI 125
+ S + LR + A + + +++ KL+ +L + ++ K
Sbjct: 959 STETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018
Query: 126 IENSDLVRQLSKVTADARMWKIKYE 150
E LV +L + + K +
Sbjct: 1019 HETEQLVSELKEQNTLLKTEKEELN 1043
Score = 47.0 bits (112), Expect = 5e-07
Identities = 19/135 (14%), Positives = 42/135 (31%)
Query: 7 ELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRR 66
L+ V ++ R K+ + ER ++ +I +++ E +K +
Sbjct: 886 TLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYK 945
Query: 67 DLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLII 126
L E E T + +K V + ++ ++ I L +
Sbjct: 946 SLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT 1005
Query: 127 ENSDLVRQLSKVTAD 141
E + K +
Sbjct: 1006 EKKTIEEWADKYKHE 1020
Score = 45.5 bits (108), Expect = 2e-06
Identities = 20/142 (14%), Positives = 50/142 (35%), Gaps = 4/142 (2%)
Query: 2 QARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEM 61
Q + V R +A Q + ++L+ + +L+ E ++
Sbjct: 871 QKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKI 930
Query: 62 SKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVAR 121
+L+R ++E +L +K N+ + ++L +L + +
Sbjct: 931 MQLQRKIDEQ----NKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRV 986
Query: 122 KKLIIENSDLVRQLSKVTADAR 143
L E + L ++L + + +
Sbjct: 987 LSLQEEIAKLRKELHQTQTEKK 1008
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 2e-04
Identities = 34/194 (17%), Positives = 67/194 (34%), Gaps = 57/194 (29%)
Query: 2 QARIYE--LEEEVEVERQ---SRAKAE-KQRADLARELEELGERLEEAGGATSAQI--EL 53
Q + + +EE + + + S K E +Q + + R E +RL Q+ +
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-----NDNQVFAKY 129
Query: 54 NKKREAEMSKLRRDLEEAN-----IQH------ESTLAN-------LRKKHNDAV----- 90
N R KLR+ L E + ++ +A ++ K + +
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 91 ---SEMGEQIDQLNKLKTKLDEAN-----------RTINDLDVARKKLIIE----NSDLV 132
+ ++ L KL ++D I+ + ++L+ N LV
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 133 RQLSKVTADARMWK 146
L V +A+ W
Sbjct: 250 --LLNV-QNAKAWN 260
Score = 38.7 bits (89), Expect = 4e-04
Identities = 25/158 (15%), Positives = 46/158 (29%), Gaps = 40/158 (25%)
Query: 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKL 64
I V + + EKQ + + + +EL K E E +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-------------YLELKVKLENEYALH 446
Query: 65 RRDLEEANIQHESTLANLRKKHND-----------AVSEMGEQIDQLNK-------LKTK 106
R ++ NI +L + D E E++ L+ K
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 107 L-------DEANRTINDLDVAR--KKLIIENSDLVRQL 135
+ + + +N L + K I +N +L
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544
Score = 32.1 bits (72), Expect = 0.068
Identities = 15/116 (12%), Positives = 43/116 (37%), Gaps = 12/116 (10%)
Query: 28 DLAREL---EELGERLEEAGGATSAQ---IELNKKREAEMSKLRRDLEEANIQHESTLAN 81
D+ + + EE+ + + L K+E + K ++ N ++ ++
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN--YKFLMSP 97
Query: 82 LRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLIIENSDLVRQLSK 137
++ + I+Q ++L N+ +V+R + ++ + +L
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYN----DNQVFAKYNVSRLQPYLKLRQALLELRP 149
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 38.9 bits (91), Expect = 3e-04
Identities = 8/88 (9%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
I ++ +++ + + +L + +L E + EL ++++
Sbjct: 906 TGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTEL--NYNGVPELTERKDTF 963
Query: 61 MSKLRRDLEEANIQHESTLANLRKKHND 88
++ ++ + +++TL ++
Sbjct: 964 FAQQWTGVKSSAETYKNTLLAELERLQK 991
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 37.4 bits (87), Expect = 9e-04
Identities = 22/133 (16%), Positives = 51/133 (38%), Gaps = 3/133 (2%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELN--KKRE 58
+ EL+E++E +S ++ K R + EL+ E + + R
Sbjct: 178 YKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRF 237
Query: 59 AEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQI-DQLNKLKTKLDEANRTINDL 117
++ L+ + + ++KK + + + + D L+ + +L + + +L
Sbjct: 238 EVINNETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYRELTKNPNSNVEL 297
Query: 118 DVARKKLIIENSD 130
L IE+ D
Sbjct: 298 AGGNASLTIEDED 310
Score = 32.7 bits (75), Expect = 0.032
Identities = 17/124 (13%), Positives = 40/124 (32%), Gaps = 19/124 (15%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
Q + ++ + VE + +E EEL E++E+ + + I+ ++ E
Sbjct: 150 FQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGE 209
Query: 61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVA 120
+ + E Q + ++ + + + N L
Sbjct: 210 LKTYKSPGLEVLFQGPR-------------------GSRYDEAEGRFEVINNETEQLKAE 250
Query: 121 RKKL 124
KK+
Sbjct: 251 EKKI 254
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.006
Identities = 22/139 (15%), Positives = 45/139 (32%), Gaps = 34/139 (24%)
Query: 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREA--- 59
A + +E VEV R ++ R +E G + I +N R A
Sbjct: 1774 ADVMSIESLVEVVFY-RGMT----------MQVAVPR-DELGRSNYGMIAINPGRVAASF 1821
Query: 60 EMSKLRRDLEEANIQHESTL--ANLRKKHN------------DAVSEMGEQIDQLNKLKT 105
L+ +E + + N +N A+ + ++ + K
Sbjct: 1822 SQEALQYVVERVGKRTGWLVEIVN----YNVENQQYVAAGDLRALDTVTNVLNFIKLQKI 1877
Query: 106 KLDEANRTINDLDVARKKL 124
+ E ++++ L+ L
Sbjct: 1878 DIIELQKSLS-LEEVEGHL 1895
Score = 30.4 bits (68), Expect = 0.29
Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 41/129 (31%)
Query: 28 DLARELEELGERLEE--AGGATSAQIEL---NKKREAEMSKLRRDLEEANIQHESTLANL 82
+L +E ++ + + + + Q+E+ N + +S + L N+ L
Sbjct: 343 NLTQE--QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT-------L 393
Query: 83 RKKHNDAVSEMGEQIDQLN------KLKTK--------------LDEANRTINDLDVARK 122
RK A S + DQ KLK L A+ IN D+ +
Sbjct: 394 RKAK--APSGL----DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINK-DLVKN 446
Query: 123 KLIIENSDL 131
+ D+
Sbjct: 447 NVSFNAKDI 455
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 34.2 bits (78), Expect = 0.014
Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 21/116 (18%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEEL--------------GERLEEAGGA 46
+QA++ ELE+E E +K + +ELEE+ ++ + A
Sbjct: 95 IQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKA 154
Query: 47 TSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNK 102
++ ++ + + +M +L L Q E V E ++ID L
Sbjct: 155 VTSYNKILTEEDLQMRRLATAL-----QKEIGERT--HAETVMVKEYRDKIDALKN 203
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 33.7 bits (77), Expect = 0.022
Identities = 18/135 (13%), Positives = 42/135 (31%), Gaps = 2/135 (1%)
Query: 20 AKAEKQRADLARELEELGERLEEAGGATSAQIE--LNKKREAEMSKLRRDLEEANIQHES 77
E Q DL L + L+ + +++ + ++ AE+ + + + +
Sbjct: 1930 RDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRN 1989
Query: 78 TLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDVARKKLIIENSDLVRQLSK 137
++K A E E L + +L+ A + I + +
Sbjct: 1990 KEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKE 2049
Query: 138 VTADARMWKIKYETN 152
A + +T
Sbjct: 2050 EYATLIRETEQIKTE 2064
Score = 28.3 bits (63), Expect = 1.2
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 91 SEMGEQIDQLNKLKTKLDEANRTIN----DLDVARKKLIIENSDLVRQLSKVTADARMWK 146
++ E+ LN KL + + L ++L ++N ++L ++ D + +
Sbjct: 1913 DQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAE 1972
Query: 147 IKYE 150
IK +
Sbjct: 1973 IKQK 1976
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 0.23
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 20/96 (20%)
Query: 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMS 62
A+ L +E E R+ R E+QR L+EL + +
Sbjct: 75 AQADRLTQEPESIRKWR---EEQRK----RLQELDAASK-------------VMEQEWRE 114
Query: 63 KLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQID 98
K ++DLEE N + + + + A +Q D
Sbjct: 115 KAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
Score = 28.6 bits (63), Expect = 0.78
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 11/67 (16%)
Query: 2 QARIYELEEEVEVERQS-RAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
+ R+ EL+ +V Q R KA+K + + E E+ N+ +
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK----------NKINNRIADKA 144
Query: 61 MSKLRRD 67
+
Sbjct: 145 FYQQPDA 151
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 29.8 bits (66), Expect = 0.37
Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 8/101 (7%)
Query: 23 EKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHEST---- 78
++ D + +L L E + + M LR D AN ++T
Sbjct: 56 DEVNQDFTNRINKLKNSLFEYQ---KNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRV 111
Query: 79 LANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDV 119
+LR + ++ E++ + L+ + + L+V
Sbjct: 112 SEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 29.4 bits (65), Expect = 0.42
Identities = 16/100 (16%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
Query: 23 EKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHES---TL 79
++ D + +L + L + N + + +R D +AN +
Sbjct: 59 DEVDQDFTSRINKLRDSLFNYQ---KNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQIN 115
Query: 80 ANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTINDLDV 119
+LR + ++ EQ+ ++N L+ + + + L+V
Sbjct: 116 EDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEV 155
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate
dehydrogenase, putative D-LACT dehydrogenase; HET: FAD;
2.57A {Rhodopseudomonas palustris}
Length = 476
Score = 29.1 bits (66), Expect = 0.56
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 26 RADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKK 85
R D LE + ER E G A I + +++ KLR ++ A + E
Sbjct: 299 RDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWKLREEISPA-QKPEGGSIK---- 353
Query: 86 HNDA---VSEMGEQIDQLNKLKTKLDEANRTIN 115
+D V+ + + I+Q N L R +
Sbjct: 354 -HDISVPVAAVPQFIEQANAAVVALIPGARPVP 385
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA;
structural genomics; 2.60A {Methylobacillus flagellatus}
Length = 348
Score = 28.3 bits (63), Expect = 1.00
Identities = 11/86 (12%), Positives = 28/86 (32%), Gaps = 6/86 (6%)
Query: 66 RDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQLNK------LKTKLDEANRTINDLDV 119
+D + N+ + A L D + + ++ TK + +
Sbjct: 146 KDFKIVNVNPQVGAAALASGTVDGFFSLFDSYILEDRGVGKIIWSTKTAPVDWKLMGGVW 205
Query: 120 ARKKLIIENSDLVRQLSKVTADARMW 145
AR + +N ++ + + + W
Sbjct: 206 ARNDFVKQNPEITQAIVTAYLKSVHW 231
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 1.5
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 16/42 (38%)
Query: 15 ERQSRAKAE---KQRA-DLARELEELGERLEEAGGATSAQIE 52
E+Q+ K + K A D A L A A +E
Sbjct: 18 EKQALKKLQASLKLYADDSAPAL------------AIKATME 47
Score = 25.7 bits (55), Expect = 6.7
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 11/30 (36%)
Query: 95 EQIDQLNKLKTKL-----DEA-----NRTI 114
E+ L KL+ L D A T+
Sbjct: 18 EK-QALKKLQASLKLYADDSAPALAIKATM 46
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 27.9 bits (63), Expect = 1.7
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 9 EEEVEVERQSRAKAEKQRADLARELEELG 37
+E VE E + +Q + L ++G
Sbjct: 834 KEVVEAEEARLKENLEQAERIREALSQIG 862
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon,
crotonase superfamily, spiral domain, ligase; 3.20A
{Escherichia coli} SCOP: c.14.1.4
Length = 339
Score = 27.7 bits (62), Expect = 1.8
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 5 IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEE 42
I ELE +++ + EK ++ E+ L E+ E
Sbjct: 32 IAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVE 69
>1omh_A TRWC protein; protein-DNA complex, bacterial conjugation, relaxase,
DNA replication, transferase/DNA complex; HET: DNA;
1.95A {Escherichia coli} SCOP: d.89.1.5 PDB: 1osb_A*
1qx0_A* 1s6m_A* 1zm5_A* 2cdm_A
Length = 293
Score = 27.4 bits (60), Expect = 2.4
Identities = 12/63 (19%), Positives = 24/63 (38%)
Query: 16 RQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQH 75
+ +R A+LA EL++LG +L +++++ SK + E
Sbjct: 187 KATRYLGAVYNAELAHELQKLGYQLRYGKDGNFDLAHIDRQQIEGFSKRTEQIAEWYAAR 246
Query: 76 EST 78
Sbjct: 247 GLD 249
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 27.1 bits (61), Expect = 2.6
Identities = 11/74 (14%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 4 RIYELE-EEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMS 62
+ +LE E ++++ ++++ + E+ +L E + + A+ E ++ ++
Sbjct: 409 KKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAK----LRAEWEREREILRKLR 464
Query: 63 KLRRDLEEANIQHE 76
+ + L+E + E
Sbjct: 465 EAQHRLDEVRREIE 478
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 27.1 bits (59), Expect = 2.9
Identities = 12/100 (12%), Positives = 35/100 (35%), Gaps = 1/100 (1%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
+ + LE+ ++ R+ E++ + ++ + Q +LN ++
Sbjct: 11 VTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQ-DLNGNNQSV 69
Query: 61 MSKLRRDLEEANIQHESTLANLRKKHNDAVSEMGEQIDQL 100
+ + LE+ + ++ + +S M L
Sbjct: 70 TRQKMQQLEQMLTALDQMRRSIVSELAGLLSAMEYVQKTL 109
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 26.8 bits (60), Expect = 3.1
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 3 ARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEA 43
++I L+E++ ++ A +++ D ++EL E L +
Sbjct: 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKE 43
>2obp_A Putative DNA-binding protein; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha}
SCOP: a.4.5.71
Length = 96
Score = 25.8 bits (56), Expect = 3.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 33 LEELGERLEEAGGATSAQIELNKKREAEMSKLRRDL 68
L L E E G + ++ K+ + MS LRR L
Sbjct: 22 LLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVL 57
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH
domain-like fold, structural genomics, joint CENT
structural genomics; HET: MSE; 1.90A {Syntrophus
aciditrophicus}
Length = 191
Score = 26.5 bits (58), Expect = 3.3
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 4 RIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAG 44
R++ E++ ++ R K + ++ E L + + EAG
Sbjct: 99 RVFLDVEKMGPWQEIRNWFLKLKTKKEQDSERLFKEIREAG 139
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Escherichia coli} SCOP: c.66.1.20
Length = 207
Score = 26.5 bits (59), Expect = 3.5
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 77 STLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTIN 115
+ L+ L K ++++ Q +QL L + N+ N
Sbjct: 3 NKLSLLLKDAGISLTD--HQKNQLIAYVNMLHKWNKAYN 39
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase;
HET: B12 DCA; 2.00A {Propionibacterium freudenreichii
subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A*
3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Length = 727
Score = 26.6 bits (59), Expect = 4.9
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 17/101 (16%)
Query: 23 EKQRADLARELEELGERLEEAGGATSAQIELNK-KREAEMSKLRR----DLEEANI---- 73
E+ DLAR+ + +E+ GG A IE K E + R D +
Sbjct: 409 EELTWDLARKAWGHIQEVEKVGGMAKA-IEKGIPKMRIEEAAARTQARIDSGRQPLIGVN 467
Query: 74 ----QHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEA 110
+HE L L K N V EQ +L KL+ + D
Sbjct: 468 KYRLEHEPPLDVL-KVDNSTVLA--EQKAKLVKLRAERDPE 505
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 26.5 bits (59), Expect = 5.1
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEE 42
M + L EV RQ + + A ELE E+L +
Sbjct: 1 MGSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 26.2 bits (58), Expect = 5.4
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 15/90 (16%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERL-------------EEAGGAT 47
+QA++ LE + ++ + +L EL ++ G
Sbjct: 921 VQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVK 980
Query: 48 SAQIELNKKREAEMSKLRR--DLEEANIQH 75
S+ AE+ +L++ DL + H
Sbjct: 981 SSAETYKNTLLAELERLQKIEDLHHHHHHH 1010
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase,
cytoplasm, transport, magnesium, PEP- utilising enzyme,
phosphotransferase system; 2.40A {Staphylococcus
aureus} PDB: 2hro_A
Length = 572
Score = 26.3 bits (59), Expect = 5.4
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 9/58 (15%)
Query: 2 QARIYELEEEVEVERQSRAK---AEKQRADLAR-----ELEELGERLEEAGGATSAQI 51
+A + E ++ ++ + E + + A EL ++ E GA A I
Sbjct: 18 KAYLLV-EPDLTFDKNEKVTDVEGEVAKFNSAIEASKVELTKIRNNAEVQLGADKAAI 74
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 26.3 bits (57), Expect = 5.7
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 1 MQARIYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAE 60
+A +E E V Q++ KA+ + ELE + + E AQ+EL + +
Sbjct: 728 SRAEAARIEGEGSVL-QAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQ 786
Query: 61 MSKLRRDLEEANIQHESTLA 80
++ + + +
Sbjct: 787 LANVEAKKFKEMTEALGPGT 806
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative,
structural genomics, methyltransferase fold, PSI; 1.60A
{Bacillus subtilis} SCOP: c.66.1.20
Length = 240
Score = 25.8 bits (57), Expect = 6.7
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 77 STLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTIN 115
+ + ++S Q++Q L E N IN
Sbjct: 5 EEFTSGLAEKGISLSP--RQLEQFELYYDMLVEWNEKIN 41
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I,
phosphoenolpyruvate:sugar phosphotransferase system,
PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A
2xdf_A 2l5h_A
Length = 575
Score = 26.0 bits (58), Expect = 6.9
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 10/59 (16%)
Query: 2 QARIYELEEEVEVERQSRAK----AEKQRADLAR-----ELEELGERLEEAGGATSAQI 51
+A + + E+E+ ++R+ + E +R R +LE + + E G I
Sbjct: 15 KALLLK-EDEIVIDRKKISADQVDQEVERFLSGRAKASAQLETIKTKAGETFGEEKEAI 72
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic
aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo
sapiens} PDB: 2xiq_A* 3bic_A
Length = 762
Score = 25.8 bits (57), Expect = 8.6
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 17/101 (16%)
Query: 23 EKQRADLARELEELGERLEEAGGATSAQIELNK-KREAEMSKLRR----DLEEANI---- 73
E D+ +L +EE GG A + K E RR D I
Sbjct: 422 ECLTNDVYDAALKLINEIEEMGGMAKA-VAEGIPKLRIEECAARRQARIDSGSEVIVGVN 480
Query: 74 ----QHESTLANLRKKHNDAVSEMGEQIDQLNKLKTKLDEA 110
+ E T+ + N +V QI++L K+K+ D+A
Sbjct: 481 KYQLEKEDTV-EVLAIDNTSVRN--RQIEKLKKIKSSRDQA 518
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA
methyltransferase, translation, cytoplasm, rRNA
processing; HET: HIC SAM AMP; 1.50A {Thermus
thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Length = 249
Score = 25.5 bits (56), Expect = 9.4
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 92 EMGEQIDQLNKLKTKLDEANRTIN 115
++ ++ ++L L EA+ +N
Sbjct: 28 DLKPHLEAFSRLYALLQEASGKVN 51
>4ew8_A Sensor protein DIVL; signal transduction, two-component
regulatory system, hiska GHKL domain, structural
genomics; 2.50A {Caulobacter crescentus}
Length = 268
Score = 25.2 bits (56), Expect = 9.9
Identities = 6/35 (17%), Positives = 7/35 (20%), Gaps = 1/35 (2%)
Query: 9 EEEVEVERQSRAKAEKQRADLARELEELGERLEEA 43
S L L + L EA
Sbjct: 3 SSHHHHHHSSGLVPRGSHM-LQSALADRSAALAEA 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.307 0.124 0.315
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,279,150
Number of extensions: 137034
Number of successful extensions: 1075
Number of sequences better than 10.0: 1
Number of HSP's gapped: 926
Number of HSP's successfully gapped: 310
Length of query: 156
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 70
Effective length of database: 4,300,587
Effective search space: 301041090
Effective search space used: 301041090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (24.7 bits)