RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16513
         (156 letters)



>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific
           5'-nucleotidase {Legionella pneumophila [TaxId: 446]}
          Length = 458

 Score = 31.0 bits (70), Expect = 0.044
 Identities = 15/83 (18%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 5   IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAEMSKL 64
           + EL EE+  + ++    EK+  +     +EL ++  +    T +  E +++ + E+  L
Sbjct: 323 VEELGEEIASQIRAL-PIEKKIGEAMAIKKELEQKYVDL--CTRSIDESSQQYDQEIHDL 379

Query: 65  RRDLEEANIQHESTLANLRKKHN 87
           +  +   ++Q    L      +N
Sbjct: 380 QLQISTVDLQISRLLQEQNSFYN 402


>d1k9xa_ d.92.1.5 (A:) Thermostable carboxypeptidase 1 {Archaeon
           Pyrococcus furiosus [TaxId: 2261]}
          Length = 497

 Score = 27.6 bits (61), Expect = 0.73
 Identities = 8/63 (12%), Positives = 24/63 (38%)

Query: 92  EMGEQIDQLNKLKTKLDEANRTINDLDVARKKLIIENSDLVRQLSKVTADARMWKIKYET 151
           E    +++   L+   +     +  LD + +       + +R++S+ T+ A     + + 
Sbjct: 63  EFVNLVEKAKGLENLNEYERGIVRVLDRSIRIARAFPPEFIREVSETTSLATKAWEEAKA 122

Query: 152 NKP 154
              
Sbjct: 123 KDD 125


>d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095
          {Ralstonia eutropha [TaxId: 106590]}
          Length = 81

 Score = 25.6 bits (56), Expect = 1.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 33 LEELGERLEEAGGATSAQIELNKKREAEMSKLRRDL 68
          L  L E   E G    +  ++ K+ +  MS LRR L
Sbjct: 10 LLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVL 45


>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
          transferase subunit alpha, AccA {Escherichia coli
          [TaxId: 562]}
          Length = 316

 Score = 25.1 bits (54), Expect = 4.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 5  IYELEEEVEVERQSRAKAEKQRADLARELEELGERLEE 42
          I ELE +++       + EK   ++  E+  L E+  E
Sbjct: 9  IAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVE 46


>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB)
           {Escherichia coli [TaxId: 562]}
          Length = 207

 Score = 24.7 bits (53), Expect = 5.4
 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 79  LANLRKKHNDAVSEMGEQIDQLNKLKTKLDEANRTIN 115
           L+ L K    ++++   Q +QL      L + N+  N
Sbjct: 5   LSLLLKDAGISLTD--HQKNQLIAYVNMLHKWNKAYN 39


>d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus
           [TaxId: 274]}
          Length = 390

 Score = 24.7 bits (53), Expect = 7.1
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 5/40 (12%)

Query: 112 RTINDLDVARKKLIIE---NSDLVRQLSKVTADARMWKIK 148
           RT+ DLD   K++++    N  +     KV  + R+ +  
Sbjct: 2   RTLLDLDPKGKRVLVRVDYNVPVQD--GKVQDETRILESL 39


>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB)
           {Bacillus subtilis [TaxId: 1423]}
          Length = 239

 Score = 24.3 bits (52), Expect = 7.7
 Identities = 7/21 (33%), Positives = 9/21 (42%)

Query: 95  EQIDQLNKLKTKLDEANRTIN 115
            Q++Q       L E N  IN
Sbjct: 21  RQLEQFELYYDMLVEWNEKIN 41


>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone
          regulator-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 81

 Score = 23.3 bits (50), Expect = 7.8
 Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 33 LEELGERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHESTLANLRKKHN 87
          +++L + +EE  G   +  +L  K +  + ++   L    IQ    +  + KK++
Sbjct: 28 VQDLAQVVEEVIGVPQSFQKLIFKGK-SLKEMETPLSALGIQDGCRVMLIGKKNS 81


>d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei
           [TaxId: 5691]}
          Length = 415

 Score = 24.0 bits (51), Expect = 9.6
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 5/40 (12%)

Query: 112 RTINDLDVARKKLIIE---NSDLVRQLSKVTADARMWKIK 148
           ++IN+ D+  KK++I    N  +     K+T D R+    
Sbjct: 3   KSINECDLKGKKVLIRVDFNVPVKN--GKITNDYRIRSAL 40


>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling
          factor, TRCF {Escherichia coli [TaxId: 562]}
          Length = 233

 Score = 24.0 bits (51), Expect = 9.9
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 19 RAKAEKQRADLARELEEL-GERLEEAGGATSAQIELNKKREAEMSKLRRDLEEANIQHES 77
          R KA ++  D+A EL ++  +R  + G A     E  +             +   I    
Sbjct: 9  RQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVL 68

Query: 78 TLANLRKKHN 87
          +        +
Sbjct: 69 SDMCQPLAMD 78


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.307    0.124    0.315 

Gapped
Lambda     K      H
   0.267   0.0506    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 521,616
Number of extensions: 23268
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 78
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 49 (23.2 bits)