Query psy16514
Match_columns 155
No_of_seqs 171 out of 1267
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 23:16:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cue_A Paired box protein PAX6 99.9 8.4E-22 2.9E-26 128.6 9.6 70 10-79 3-72 (80)
2 1nk2_P Homeobox protein VND; h 99.9 1E-21 3.5E-26 127.3 8.6 67 7-73 2-68 (77)
3 2cra_A Homeobox protein HOX-B1 99.9 7.3E-22 2.5E-26 125.8 6.7 64 9-72 2-65 (70)
4 2dmu_A Homeobox protein goosec 99.9 1.9E-21 6.4E-26 123.8 7.6 63 10-72 3-65 (70)
5 2dmq_A LIM/homeobox protein LH 99.8 1.5E-21 5E-26 127.4 7.0 64 10-73 3-66 (80)
6 2dmt_A Homeobox protein BARH-l 99.8 2.3E-21 8E-26 126.5 7.9 64 9-72 12-75 (80)
7 2da2_A Alpha-fetoprotein enhan 99.8 1.7E-21 5.7E-26 124.0 7.0 64 9-72 2-65 (70)
8 2dms_A Homeobox protein OTX2; 99.8 6.2E-22 2.1E-26 129.2 5.1 64 9-72 2-65 (80)
9 1puf_A HOX-1.7, homeobox prote 99.8 4.4E-21 1.5E-25 124.3 9.1 71 5-75 4-74 (77)
10 2da1_A Alpha-fetoprotein enhan 99.8 1.7E-21 5.9E-26 124.0 6.7 64 9-72 2-65 (70)
11 2djn_A Homeobox protein DLX-5; 99.8 1.7E-21 5.7E-26 124.1 6.1 64 9-72 2-65 (70)
12 2kt0_A Nanog, homeobox protein 99.8 3.1E-21 1.1E-25 126.9 7.3 65 8-72 16-80 (84)
13 2e1o_A Homeobox protein PRH; D 99.8 4.7E-21 1.6E-25 122.0 7.8 62 11-72 4-65 (70)
14 2h1k_A IPF-1, pancreatic and d 99.8 3.7E-21 1.3E-25 120.1 6.7 59 14-72 3-61 (63)
15 2da3_A Alpha-fetoprotein enhan 99.8 3.8E-21 1.3E-25 125.3 7.0 65 8-72 11-75 (80)
16 2l7z_A Homeobox protein HOX-A1 99.8 6E-21 2.1E-25 122.5 7.5 62 11-72 4-65 (73)
17 2vi6_A Homeobox protein nanog; 99.8 2.2E-21 7.4E-26 120.7 4.9 59 14-72 3-61 (62)
18 2hdd_A Protein (engrailed home 99.8 4.7E-21 1.6E-25 118.9 6.3 58 14-71 3-60 (61)
19 1ig7_A Homeotic protein MSX-1; 99.8 6.2E-21 2.1E-25 117.1 6.7 57 15-71 1-57 (58)
20 1fjl_A Paired protein; DNA-bin 99.8 1E-20 3.5E-25 123.7 7.5 65 10-74 14-78 (81)
21 1zq3_P PRD-4, homeotic bicoid 99.8 1.1E-20 3.9E-25 119.6 7.3 61 14-74 2-62 (68)
22 1b8i_A Ultrabithorax, protein 99.8 5.9E-21 2E-25 124.9 5.7 64 9-72 15-78 (81)
23 3a01_A Homeodomain-containing 99.8 1.5E-20 5.1E-25 126.0 7.7 64 10-73 13-76 (93)
24 1jgg_A Segmentation protein EV 99.8 9.8E-21 3.3E-25 117.0 6.2 58 15-72 2-59 (60)
25 1bw5_A ISL-1HD, insulin gene e 99.8 9.5E-21 3.3E-25 119.2 5.9 60 13-72 2-61 (66)
26 2da4_A Hypothetical protein DK 99.8 8.2E-21 2.8E-25 123.9 5.7 63 10-72 4-70 (80)
27 1uhs_A HOP, homeodomain only p 99.8 1.8E-20 6.2E-25 119.9 7.1 60 14-73 1-61 (72)
28 1ahd_P Antennapedia protein mu 99.8 1.2E-20 4E-25 119.6 6.1 59 14-72 2-60 (68)
29 1yz8_P Pituitary homeobox 2; D 99.8 7.3E-21 2.5E-25 120.5 4.9 61 13-73 2-62 (68)
30 1ftt_A TTF-1 HD, thyroid trans 99.8 2.4E-20 8.2E-25 118.1 7.0 59 14-72 2-60 (68)
31 1wh5_A ZF-HD homeobox family p 99.8 1.1E-20 3.9E-25 123.3 5.6 61 11-71 14-78 (80)
32 2m0c_A Homeobox protein arista 99.8 3.2E-20 1.1E-24 119.4 7.6 62 11-72 6-67 (75)
33 3rkq_A Homeobox protein NKX-2. 99.8 2.4E-20 8.4E-25 114.2 6.5 56 15-70 3-58 (58)
34 2r5y_A Homeotic protein sex co 99.8 1.9E-20 6.4E-25 124.3 6.4 63 10-72 24-86 (88)
35 1akh_A Protein (mating-type pr 99.8 1.4E-20 4.6E-25 116.7 5.3 59 12-70 3-61 (61)
36 2da5_A Zinc fingers and homeob 99.8 7.4E-21 2.5E-25 122.7 4.3 59 14-72 7-65 (75)
37 2k40_A Homeobox expressed in E 99.8 2.6E-20 8.8E-25 117.6 6.6 58 15-72 2-59 (67)
38 3a02_A Homeobox protein arista 99.8 2.2E-20 7.4E-25 115.5 5.7 57 17-73 2-58 (60)
39 1wh7_A ZF-HD homeobox family p 99.8 1.4E-20 4.6E-25 122.9 4.5 62 9-71 12-78 (80)
40 2hi3_A Homeodomain-only protei 99.8 5.9E-20 2E-24 117.8 7.3 59 15-73 3-62 (73)
41 1x2n_A Homeobox protein pknox1 99.8 9.2E-20 3.1E-24 116.9 7.8 64 9-72 2-68 (73)
42 3a03_A T-cell leukemia homeobo 99.8 5.3E-20 1.8E-24 112.2 6.3 54 19-72 2-55 (56)
43 2cuf_A FLJ21616 protein; homeo 99.8 7.7E-20 2.6E-24 123.0 7.4 65 10-74 3-82 (95)
44 3nar_A ZHX1, zinc fingers and 99.8 4.9E-20 1.7E-24 124.2 6.4 65 9-73 20-84 (96)
45 2ecc_A Homeobox and leucine zi 99.8 6.1E-20 2.1E-24 118.2 6.5 56 17-72 6-61 (76)
46 2da6_A Hepatocyte nuclear fact 99.8 1.8E-19 6.3E-24 121.9 9.1 69 9-77 1-90 (102)
47 1b72_A Protein (homeobox prote 99.8 9E-20 3.1E-24 123.1 6.7 62 12-73 32-93 (97)
48 2ly9_A Zinc fingers and homeob 99.8 1.1E-19 3.8E-24 116.7 6.5 59 14-72 6-64 (74)
49 2ecb_A Zinc fingers and homeob 99.8 6.7E-20 2.3E-24 121.7 5.1 55 19-73 16-70 (89)
50 1wi3_A DNA-binding protein SAT 99.8 2.1E-19 7.3E-24 112.2 6.4 62 9-70 2-64 (71)
51 2dn0_A Zinc fingers and homeob 99.8 2.5E-19 8.6E-24 115.7 6.2 56 17-72 11-66 (76)
52 1du6_A PBX1, homeobox protein 99.8 1.3E-19 4.4E-24 113.3 4.6 58 14-71 3-63 (64)
53 1puf_B PRE-B-cell leukemia tra 99.8 4.7E-19 1.6E-23 113.5 6.9 58 15-72 2-62 (73)
54 3d1n_I POU domain, class 6, tr 99.8 4.5E-19 1.5E-23 128.6 7.2 64 8-71 87-150 (151)
55 2dmn_A Homeobox protein TGIF2L 99.8 7.9E-19 2.7E-23 115.2 7.7 63 10-72 3-68 (83)
56 1k61_A Mating-type protein alp 99.8 5.1E-19 1.8E-23 109.2 6.4 54 18-71 2-58 (60)
57 1b72_B Protein (PBX1); homeodo 99.8 1.9E-19 6.5E-24 119.1 4.6 59 15-73 2-63 (87)
58 1au7_A Protein PIT-1, GHF-1; c 99.8 2E-19 6.7E-24 129.8 4.9 64 9-72 82-145 (146)
59 2cqx_A LAG1 longevity assuranc 99.8 1.5E-19 5.2E-24 115.7 3.6 58 14-71 8-66 (72)
60 1mnm_C Protein (MAT alpha-2 tr 99.8 1.1E-18 3.7E-23 115.5 6.7 59 13-71 26-87 (87)
61 2xsd_C POU domain, class 3, tr 99.8 5.4E-19 1.8E-23 129.8 5.8 64 10-73 95-158 (164)
62 3nau_A Zinc fingers and homeob 99.8 1E-18 3.5E-23 109.1 6.1 52 22-73 12-63 (66)
63 1e3o_C Octamer-binding transcr 99.7 1E-18 3.5E-23 127.8 6.1 61 12-72 99-159 (160)
64 2dmp_A Zinc fingers and homeob 99.7 8.7E-19 3E-23 116.5 5.0 56 18-73 17-72 (89)
65 1le8_B Mating-type protein alp 99.7 2.1E-18 7.1E-23 113.2 6.4 57 16-72 4-63 (83)
66 1lfb_A Liver transcription fac 99.7 8.2E-19 2.8E-23 118.7 3.7 64 10-73 5-89 (99)
67 2l9r_A Homeobox protein NKX-3. 99.7 3.3E-18 1.1E-22 108.5 5.1 54 19-72 9-62 (69)
68 2e19_A Transcription factor 8; 99.7 4.2E-18 1.4E-22 106.5 5.1 53 19-71 8-60 (64)
69 3l1p_A POU domain, class 5, tr 99.7 3.7E-18 1.3E-22 124.2 5.5 61 12-72 94-154 (155)
70 1x2m_A LAG1 longevity assuranc 99.7 3.4E-18 1.2E-22 106.6 3.9 49 23-71 9-58 (64)
71 2d5v_A Hepatocyte nuclear fact 99.7 7.6E-18 2.6E-22 123.5 5.2 62 11-72 94-155 (164)
72 3k2a_A Homeobox protein MEIS2; 99.7 1.5E-16 5.2E-21 100.2 6.0 54 19-72 3-59 (67)
73 1ic8_A Hepatocyte nuclear fact 99.6 4.4E-16 1.5E-20 116.9 3.0 60 12-71 113-193 (194)
74 2da7_A Zinc finger homeobox pr 99.6 2.7E-15 9.4E-20 94.1 5.2 46 23-68 14-59 (71)
75 2lk2_A Homeobox protein TGIF1; 99.5 3.8E-14 1.3E-18 93.6 8.0 56 19-74 10-68 (89)
76 2h8r_A Hepatocyte nuclear fact 99.5 9.6E-15 3.3E-19 111.0 5.2 60 10-69 138-218 (221)
77 1mh3_A Maltose binding-A1 home 99.4 1.2E-13 4.2E-18 112.6 4.1 54 17-70 368-421 (421)
78 2nzz_A Penetratin conjugated G 98.8 6.5E-10 2.2E-14 61.4 0.7 20 56-75 1-20 (37)
79 2ys9_A Homeobox and leucine zi 96.4 0.0029 9.8E-08 39.3 3.5 45 20-64 12-56 (70)
80 2glo_A Brinker CG9653-PA; prot 89.7 0.44 1.5E-05 27.7 3.8 46 18-64 3-48 (59)
81 1hlv_A CENP-B, major centromer 89.5 0.82 2.8E-05 30.6 5.6 49 17-68 4-52 (131)
82 2elh_A CG11849-PA, LD40883P; s 89.4 0.92 3.1E-05 28.5 5.5 44 15-63 17-60 (87)
83 3hug_A RNA polymerase sigma fa 89.1 1.1 3.6E-05 28.3 5.7 48 20-72 37-84 (92)
84 2o8x_A Probable RNA polymerase 85.9 1.4 4.9E-05 25.7 4.6 47 20-71 15-61 (70)
85 1tc3_C Protein (TC3 transposas 82.8 2.3 7.9E-05 22.5 4.2 40 20-64 5-44 (51)
86 1s7o_A Hypothetical UPF0122 pr 81.6 2.9 9.9E-05 27.7 5.0 48 20-72 22-69 (113)
87 1ku3_A Sigma factor SIGA; heli 80.4 3.5 0.00012 24.6 4.8 50 20-70 10-59 (73)
88 1je8_A Nitrate/nitrite respons 80.1 2.8 9.4E-05 25.9 4.3 50 19-74 20-69 (82)
89 2p7v_B Sigma-70, RNA polymeras 79.9 2.5 8.5E-05 24.9 3.9 51 20-71 5-55 (68)
90 1jko_C HIN recombinase, DNA-in 79.7 0.82 2.8E-05 24.9 1.5 43 20-67 5-47 (52)
91 1iuf_A Centromere ABP1 protein 79.2 5.1 0.00017 27.5 5.9 51 15-65 6-60 (144)
92 1tty_A Sigma-A, RNA polymerase 78.9 3.4 0.00012 25.7 4.5 51 20-71 18-68 (87)
93 2jn6_A Protein CGL2762, transp 78.8 3.2 0.00011 26.2 4.4 42 18-63 3-45 (97)
94 3mzy_A RNA polymerase sigma-H 78.7 4.6 0.00016 27.1 5.6 47 20-72 109-155 (164)
95 3c57_A Two component transcrip 77.4 3.4 0.00012 26.2 4.2 46 20-71 27-72 (95)
96 1fse_A GERE; helix-turn-helix 77.2 3.6 0.00012 24.2 4.1 50 18-73 9-58 (74)
97 1xsv_A Hypothetical UPF0122 pr 77.1 4.3 0.00015 26.8 4.8 48 20-72 25-72 (113)
98 1p4w_A RCSB; solution structur 76.6 5.6 0.00019 25.6 5.2 49 18-72 32-80 (99)
99 2q24_A Putative TETR family tr 75.3 1.6 5.3E-05 30.5 2.3 41 26-68 21-61 (194)
100 1x3u_A Transcriptional regulat 74.2 3.8 0.00013 24.5 3.7 49 20-74 16-64 (79)
101 2rek_A Putative TETR-family tr 73.5 0.8 2.7E-05 32.1 0.3 41 26-68 22-62 (199)
102 1or7_A Sigma-24, RNA polymeras 71.3 6.6 0.00023 27.3 4.9 46 21-71 141-186 (194)
103 1rp3_A RNA polymerase sigma fa 71.3 6.2 0.00021 28.3 4.9 47 21-72 188-234 (239)
104 2rn7_A IS629 ORFA; helix, all 69.4 7.6 0.00026 24.8 4.5 46 18-63 4-52 (108)
105 3dcf_A Transcriptional regulat 69.3 2.3 7.8E-05 29.8 2.0 41 26-67 37-77 (218)
106 2rnj_A Response regulator prot 69.3 3.1 0.00011 26.0 2.5 48 19-72 28-75 (91)
107 2pmy_A RAS and EF-hand domain- 68.8 3.5 0.00012 25.4 2.6 46 18-63 18-68 (91)
108 3bni_A Putative TETR-family tr 68.7 1.9 6.5E-05 31.1 1.5 41 26-67 49-89 (229)
109 3fiw_A Putative TETR-family tr 67.9 2.4 8.3E-05 30.6 1.9 56 14-70 18-74 (211)
110 2iai_A Putative transcriptiona 62.7 5.2 0.00018 28.6 2.9 44 25-69 35-78 (230)
111 3bru_A Regulatory protein, TET 62.4 4.8 0.00016 28.3 2.6 42 26-68 36-77 (222)
112 2lv7_A Calcium-binding protein 62.3 17 0.00057 23.0 5.0 46 18-63 27-79 (100)
113 2qko_A Possible transcriptiona 62.1 4.4 0.00015 28.5 2.4 44 26-70 34-77 (215)
114 1fi6_A EH domain protein REPS1 62.0 9.3 0.00032 23.6 3.7 44 20-63 2-50 (92)
115 3ulq_B Transcriptional regulat 61.9 16 0.00056 22.8 4.9 49 17-71 26-74 (90)
116 2hin_A GP39, repressor protein 61.8 6.2 0.00021 24.0 2.7 38 44-81 13-50 (71)
117 2zcx_A SCO7815, TETR-family tr 61.3 3.5 0.00012 29.9 1.8 44 26-70 29-72 (231)
118 2hku_A A putative transcriptio 61.3 4.8 0.00016 28.3 2.4 42 26-69 26-67 (215)
119 2zb9_A Putative transcriptiona 60.3 2.4 8.1E-05 29.9 0.6 44 26-70 29-72 (214)
120 2x48_A CAG38821; archeal virus 60.3 11 0.00038 20.7 3.5 39 20-63 13-53 (55)
121 2k27_A Paired box protein PAX- 59.6 31 0.0011 23.4 6.4 41 19-64 24-64 (159)
122 1u78_A TC3 transposase, transp 59.5 13 0.00045 24.4 4.3 41 19-64 5-45 (141)
123 2jpc_A SSRB; DNA binding prote 58.4 6.4 0.00022 22.2 2.2 33 44-76 16-48 (61)
124 3fmy_A HTH-type transcriptiona 58.2 13 0.00044 21.9 3.7 41 19-66 9-49 (73)
125 3i5g_B Myosin regulatory light 57.3 20 0.0007 24.2 5.1 40 17-56 6-50 (153)
126 2x7l_M HIV REV; nuclear export 56.4 16 0.00055 24.4 4.1 36 26-75 15-50 (115)
127 2g7g_A RHA04620, putative tran 56.0 5 0.00017 28.8 1.8 48 20-70 10-58 (213)
128 3t72_q RNA polymerase sigma fa 55.7 31 0.0011 22.1 5.4 54 20-74 19-72 (99)
129 3bd1_A CRO protein; transcript 55.3 5.5 0.00019 23.9 1.6 25 44-68 14-38 (79)
130 2g7l_A TETR-family transcripti 55.2 5.9 0.0002 29.3 2.1 52 18-70 16-68 (243)
131 3lph_A Protein REV; helix-loop 54.8 26 0.00088 21.4 4.5 35 26-74 18-52 (72)
132 3clo_A Transcriptional regulat 54.5 18 0.00061 26.9 4.7 52 19-76 196-247 (258)
133 2hxo_A Putative TETR-family tr 54.0 13 0.00045 27.1 3.8 52 18-70 13-65 (237)
134 2xi8_A Putative transcription 53.2 5.7 0.00019 22.4 1.4 23 44-66 17-39 (66)
135 2qwt_A Transcriptional regulat 52.7 7.8 0.00027 26.9 2.3 40 26-67 19-58 (196)
136 3gzi_A Transcriptional regulat 52.7 5.5 0.00019 27.8 1.5 42 26-68 23-64 (218)
137 3o9x_A Uncharacterized HTH-typ 52.3 16 0.00055 24.1 3.8 40 21-67 71-110 (133)
138 2q0o_A Probable transcriptiona 52.2 26 0.00087 25.6 5.2 51 18-74 173-223 (236)
139 2fq4_A Transcriptional regulat 51.7 6.2 0.00021 27.3 1.6 43 26-69 18-60 (192)
140 2r1j_L Repressor protein C2; p 51.4 6.4 0.00022 22.3 1.4 24 44-67 21-44 (68)
141 2q1z_A RPOE, ECF SIGE; ECF sig 51.0 4.2 0.00014 28.2 0.6 26 46-71 156-181 (184)
142 3him_A Probable transcriptiona 50.7 8.9 0.0003 26.4 2.3 44 25-69 21-64 (211)
143 1pb6_A Hypothetical transcript 50.6 4.7 0.00016 28.0 0.8 42 26-68 24-65 (212)
144 3kz9_A SMCR; transcriptional r 50.5 10 0.00035 25.9 2.6 41 26-67 23-63 (206)
145 1c07_A Protein (epidermal grow 50.3 14 0.00049 22.9 3.1 44 20-63 3-51 (95)
146 3lwj_A Putative TETR-family tr 49.5 5.2 0.00018 27.6 0.9 42 26-68 18-59 (202)
147 1zug_A Phage 434 CRO protein; 49.0 7 0.00024 22.4 1.3 24 44-67 19-42 (71)
148 3ccy_A Putative TETR-family tr 48.7 11 0.00039 26.0 2.7 42 26-68 20-61 (203)
149 3bs3_A Putative DNA-binding pr 48.7 7.5 0.00026 22.7 1.5 24 44-67 26-49 (76)
150 1pdn_C Protein (PRD paired); p 48.7 30 0.001 21.9 4.6 40 20-64 17-56 (128)
151 2v57_A TETR family transcripti 48.5 6.7 0.00023 26.7 1.4 41 26-69 20-60 (190)
152 2hxi_A Putative transcriptiona 46.7 15 0.0005 26.9 3.1 51 18-69 26-77 (241)
153 3rd3_A Probable transcriptiona 46.3 10 0.00034 25.8 2.0 41 26-67 16-56 (197)
154 1adr_A P22 C2 repressor; trans 46.0 8.6 0.00029 22.3 1.4 25 43-67 20-44 (76)
155 3omt_A Uncharacterized protein 45.6 8.5 0.00029 22.4 1.4 23 44-66 24-46 (73)
156 2b5a_A C.BCLI; helix-turn-heli 45.1 9 0.00031 22.4 1.4 24 43-66 25-48 (77)
157 2y2z_A SIM16, SIMR, putative r 45.1 16 0.00056 27.3 3.2 51 20-71 26-77 (267)
158 1r69_A Repressor protein CI; g 44.8 9.2 0.00031 21.7 1.4 24 44-67 17-40 (69)
159 1l3l_A Transcriptional activat 44.5 36 0.0012 24.7 5.0 50 18-73 171-220 (234)
160 2qtq_A Transcriptional regulat 44.1 8.1 0.00028 26.7 1.2 43 26-69 22-64 (213)
161 2of7_A Putative TETR-family tr 44.0 5.9 0.0002 29.1 0.5 44 26-70 54-97 (260)
162 3q0w_A HTH-type transcriptiona 43.8 12 0.00042 26.7 2.2 43 26-69 50-92 (236)
163 3g1o_A Transcriptional regulat 43.2 10 0.00034 27.5 1.7 43 26-69 49-91 (255)
164 2kpj_A SOS-response transcript 42.3 10 0.00036 23.4 1.4 25 43-67 24-48 (94)
165 3b7h_A Prophage LP1 protein 11 42.1 11 0.00036 22.1 1.4 23 44-66 23-45 (78)
166 1y7y_A C.AHDI; helix-turn-heli 41.5 11 0.00038 21.7 1.4 24 43-66 28-51 (74)
167 2a6c_A Helix-turn-helix motif; 41.4 12 0.00043 22.5 1.7 24 43-66 33-56 (83)
168 1k78_A Paired box protein PAX5 41.3 42 0.0014 22.3 4.6 41 19-64 31-71 (149)
169 2wiu_B HTH-type transcriptiona 41.1 14 0.00049 22.1 2.0 24 44-67 28-51 (88)
170 2qib_A TETR-family transcripti 41.1 8.4 0.00029 27.5 1.0 44 26-70 19-62 (231)
171 1j7q_A CAVP, calcium vector pr 40.1 48 0.0016 19.3 4.3 44 19-62 6-59 (86)
172 3qp6_A CVIR transcriptional re 39.5 66 0.0022 24.0 5.8 52 19-76 196-247 (265)
173 3kkd_A Transcriptional regulat 39.3 14 0.00047 26.4 1.9 42 26-68 41-82 (237)
174 3jsj_A Putative TETR-family tr 39.2 15 0.00051 25.0 2.0 44 25-70 14-57 (190)
175 2lfw_A PHYR sigma-like domain; 38.9 15 0.0005 25.1 1.9 47 20-71 93-139 (157)
176 2ict_A Antitoxin HIGA; helix-t 38.7 13 0.00046 22.8 1.5 23 44-66 24-46 (94)
177 2lhi_A Calmodulin, serine/thre 38.5 25 0.00086 24.3 3.1 39 18-56 2-45 (176)
178 2rae_A Transcriptional regulat 38.3 18 0.00061 24.9 2.3 41 26-67 23-63 (207)
179 2k27_A Paired box protein PAX- 37.7 72 0.0025 21.4 5.4 46 19-64 82-134 (159)
180 1l0o_C Sigma factor; bergerat 37.5 7 0.00024 28.0 0.0 44 21-69 199-242 (243)
181 1t33_A Putative transcriptiona 36.7 13 0.00046 25.9 1.4 43 26-70 18-60 (224)
182 2ef8_A C.ECOT38IS, putative tr 36.7 15 0.00051 21.8 1.5 23 44-66 26-48 (84)
183 1dtl_A Cardiac troponin C; hel 36.6 62 0.0021 21.0 4.8 46 18-63 9-62 (161)
184 2kvr_A Ubiquitin carboxyl-term 36.6 8.7 0.0003 26.2 0.4 23 44-66 72-94 (130)
185 1rzs_A Antirepressor, regulato 36.2 13 0.00045 21.4 1.1 20 43-62 12-31 (61)
186 3f1b_A TETR-like transcription 36.0 15 0.0005 25.1 1.5 43 26-69 20-62 (203)
187 3bdn_A Lambda repressor; repre 35.7 17 0.00058 26.3 1.9 24 43-66 32-55 (236)
188 2k9q_A Uncharacterized protein 35.6 14 0.00049 21.7 1.3 23 44-66 18-40 (77)
189 2np3_A Putative TETR-family re 35.6 9.3 0.00032 26.7 0.4 41 26-67 36-76 (212)
190 3c3w_A Two component transcrip 35.6 36 0.0012 24.1 3.7 47 19-71 148-194 (225)
191 2oi8_A Putative regulatory pro 34.6 15 0.00052 26.1 1.4 42 26-68 22-63 (216)
192 2i10_A Putative TETR transcrip 34.2 33 0.0011 23.7 3.2 44 25-69 16-59 (202)
193 3f6w_A XRE-family like protein 34.1 17 0.00057 21.6 1.4 23 44-66 30-52 (83)
194 3t76_A VANU, transcriptional r 33.3 17 0.00059 22.6 1.4 25 43-67 39-63 (88)
195 3i5g_C Myosin catalytic light 33.2 42 0.0014 22.7 3.5 37 20-56 2-45 (159)
196 1lmb_3 Protein (lambda repress 33.2 18 0.0006 22.0 1.4 23 44-66 33-55 (92)
197 1j9i_A GPNU1 DBD;, terminase s 32.9 20 0.00068 20.9 1.6 21 44-64 5-25 (68)
198 3g7r_A Putative transcriptiona 32.8 39 0.0013 23.6 3.4 42 26-68 41-82 (221)
199 1eh2_A EPS15; calcium binding, 32.7 71 0.0024 20.3 4.4 45 19-63 7-55 (106)
200 3qkx_A Uncharacterized HTH-typ 32.6 23 0.0008 23.6 2.1 43 26-69 14-56 (188)
201 2guh_A Putative TETR-family tr 32.2 15 0.00052 26.0 1.1 42 26-68 45-86 (214)
202 3frq_A Repressor protein MPHR( 32.1 33 0.0011 23.3 2.9 42 26-68 14-55 (195)
203 3szt_A QCSR, quorum-sensing co 32.0 72 0.0025 23.2 4.9 48 19-72 174-221 (237)
204 3cwr_A Transcriptional regulat 31.9 14 0.00049 25.2 0.9 43 26-69 23-65 (208)
205 1avs_A Troponin C; muscle cont 31.3 65 0.0022 18.9 3.9 45 19-63 12-63 (90)
206 2pij_A Prophage PFL 6 CRO; tra 31.0 23 0.00077 20.1 1.6 21 44-64 16-36 (67)
207 1a04_A Nitrate/nitrite respons 31.0 59 0.002 22.5 4.1 48 19-72 153-200 (215)
208 3s8q_A R-M controller protein; 30.9 20 0.00069 21.2 1.4 24 43-66 26-49 (82)
209 2id3_A Putative transcriptiona 30.8 9.6 0.00033 27.1 -0.2 44 26-70 46-89 (225)
210 3qq6_A HTH-type transcriptiona 30.4 21 0.00072 21.2 1.4 22 43-64 25-46 (78)
211 1x57_A Endothelial differentia 30.2 21 0.00073 21.6 1.4 23 44-66 29-51 (91)
212 3hta_A EBRA repressor; TETR fa 30.1 35 0.0012 23.9 2.8 44 26-70 34-77 (217)
213 2l49_A C protein; P2 bacteriop 29.9 21 0.0007 22.0 1.3 24 44-67 20-43 (99)
214 2ktg_A Calmodulin, putative; e 29.9 54 0.0018 18.9 3.3 45 19-63 6-57 (85)
215 2np5_A Transcriptional regulat 29.9 16 0.00054 25.4 0.8 43 26-69 15-57 (203)
216 2wui_A MEXZ, transcriptional r 29.9 26 0.0009 24.3 2.1 44 26-70 17-60 (210)
217 3aqt_A Bacterial regulatory pr 29.2 12 0.0004 27.1 0.0 44 26-70 52-95 (245)
218 3fwb_A Cell division control p 29.1 97 0.0033 19.9 4.8 46 17-62 13-65 (161)
219 2xdn_A HTH-type transcriptiona 28.9 35 0.0012 23.5 2.6 43 26-69 17-59 (210)
220 2opo_A Polcalcin CHE A 3; calc 28.9 45 0.0015 19.4 2.8 45 19-63 3-53 (86)
221 2pjp_A Selenocysteine-specific 28.8 42 0.0014 21.9 2.8 42 22-64 2-43 (121)
222 1l9z_H Sigma factor SIGA; heli 28.7 1.1E+02 0.0036 25.1 5.7 50 21-71 376-425 (438)
223 3cjd_A Transcriptional regulat 28.6 16 0.00055 25.3 0.7 43 26-69 18-60 (198)
224 3vpr_A Transcriptional regulat 28.6 35 0.0012 23.1 2.5 43 26-69 9-51 (190)
225 3vp5_A Transcriptional regulat 28.4 40 0.0014 23.0 2.8 42 26-68 18-59 (189)
226 3c07_A Putative TETR-family tr 27.9 19 0.00066 26.7 1.1 43 26-69 47-89 (273)
227 2hyt_A TETR-family transcripti 27.9 44 0.0015 22.8 2.9 42 26-68 18-59 (197)
228 2joj_A Centrin protein; N-term 27.5 48 0.0017 18.7 2.7 42 21-62 1-49 (77)
229 3mvp_A TETR/ACRR transcription 27.4 22 0.00077 24.4 1.3 42 26-68 32-73 (217)
230 2iu5_A DHAS, YCEG, HTH-type dh 27.3 34 0.0012 23.3 2.3 45 26-71 19-63 (195)
231 1k78_A Paired box protein PAX5 27.3 1.3E+02 0.0046 19.7 6.0 44 19-65 89-142 (149)
232 2zcm_A Biofilm operon icaabcd 27.2 29 0.001 23.5 1.9 45 25-70 12-56 (192)
233 2ppx_A AGR_C_3184P, uncharacte 27.1 26 0.00089 21.8 1.5 23 44-66 46-68 (99)
234 3op9_A PLI0006 protein; struct 27.1 26 0.00089 22.3 1.5 25 43-67 24-48 (114)
235 2ofy_A Putative XRE-family tra 27.0 26 0.00089 20.9 1.4 24 43-66 29-52 (86)
236 3ppb_A Putative TETR family tr 26.8 41 0.0014 22.5 2.6 42 26-68 15-56 (195)
237 2ewt_A BLDD, putative DNA-bind 26.7 26 0.0009 19.8 1.3 23 44-66 24-48 (71)
238 2dg8_A Putative TETR-family tr 26.4 28 0.00095 23.7 1.6 43 26-69 15-57 (193)
239 3on2_A Probable transcriptiona 26.2 22 0.00074 24.0 1.0 42 26-68 18-59 (199)
240 2ao9_A Phage protein; structur 26.2 48 0.0016 23.3 2.8 48 18-65 21-72 (155)
241 3lsg_A Two-component response 26.1 42 0.0014 20.8 2.3 24 42-65 20-43 (103)
242 2v79_A DNA replication protein 26.0 64 0.0022 21.7 3.4 42 21-65 30-75 (135)
243 2jml_A DNA binding domain/tran 26.0 22 0.00076 21.5 0.9 20 44-63 8-27 (81)
244 3bqz_B HTH-type transcriptiona 25.9 37 0.0013 22.8 2.2 42 26-68 8-49 (194)
245 2oer_A Probable transcriptiona 25.8 24 0.00081 24.7 1.2 39 30-69 34-72 (214)
246 1uxc_A FRUR (1-57), fructose r 25.7 32 0.0011 20.1 1.6 23 44-66 3-25 (65)
247 2mys_B Myosin; muscle protein, 25.3 1.2E+02 0.0041 19.7 4.8 44 20-63 18-69 (166)
248 2pz9_A Putative regulatory pro 25.2 15 0.0005 26.1 -0.0 44 26-70 36-79 (226)
249 2gen_A Probable transcriptiona 25.1 41 0.0014 23.0 2.3 42 26-68 13-54 (197)
250 2w53_A Repressor, SMet; antibi 24.7 36 0.0012 23.6 2.0 43 26-69 17-59 (219)
251 2d6y_A Putative TETR family re 24.5 44 0.0015 23.0 2.4 44 26-70 14-57 (202)
252 1sgm_A Putative HTH-type trans 24.3 51 0.0018 21.9 2.7 41 26-67 12-53 (191)
253 1mij_A Protein prospero; homeo 24.3 69 0.0024 22.1 3.2 54 19-72 2-58 (152)
254 3qbm_A TETR transcriptional re 24.3 35 0.0012 23.0 1.8 42 26-68 13-54 (199)
255 3qrx_A Centrin; calcium-bindin 24.3 93 0.0032 20.3 4.0 39 16-54 17-60 (169)
256 3nxc_A HTH-type protein SLMA; 24.2 40 0.0014 23.0 2.1 35 32-67 37-71 (212)
257 2yve_A Transcriptional regulat 24.2 48 0.0016 22.4 2.5 43 26-69 10-52 (185)
258 3vib_A MTRR; helix-turn-helix 24.2 39 0.0013 23.2 2.1 43 26-69 16-58 (210)
259 3egq_A TETR family transcripti 24.0 34 0.0012 22.6 1.7 43 26-69 10-52 (170)
260 3v6g_A Probable transcriptiona 23.9 34 0.0012 24.0 1.7 41 26-67 20-60 (208)
261 3gyk_A 27KDA outer membrane pr 23.8 1.7E+02 0.0057 19.5 5.9 46 26-71 85-130 (175)
262 3nrg_A TETR family transcripti 23.6 47 0.0016 22.7 2.4 42 26-68 19-60 (217)
263 3mlf_A Transcriptional regulat 23.3 34 0.0012 22.0 1.5 23 44-66 39-61 (111)
264 3cec_A Putative antidote prote 23.1 33 0.0011 21.3 1.4 23 44-66 34-56 (104)
265 3he0_A Transcriptional regulat 23.1 52 0.0018 22.0 2.5 44 25-69 16-59 (196)
266 2fd5_A Transcriptional regulat 23.0 56 0.0019 21.7 2.7 43 26-69 13-55 (180)
267 1qgp_A Protein (double strande 22.9 38 0.0013 20.5 1.6 36 26-62 17-52 (77)
268 1umq_A Photosynthetic apparatu 22.9 1.3E+02 0.0043 18.5 4.0 38 21-62 38-75 (81)
269 1b0n_A Protein (SINR protein); 22.8 34 0.0012 21.3 1.4 21 44-64 17-37 (111)
270 3j04_B Myosin regulatory light 22.7 1.5E+02 0.0051 18.6 4.9 43 21-63 1-50 (143)
271 2kgr_A Intersectin-1; structur 22.6 72 0.0025 20.2 3.0 45 19-63 6-55 (111)
272 1wdc_B Scallop myosin; calcium 22.5 1.6E+02 0.0054 18.8 5.0 45 19-63 10-61 (156)
273 1aih_A HP1 integrase; DNA inte 22.5 1.7E+02 0.0058 19.3 5.2 41 17-57 3-43 (170)
274 3f0c_A TETR-molecule A, transc 22.5 38 0.0013 23.2 1.8 42 26-68 17-58 (216)
275 1zk8_A Transcriptional regulat 22.4 38 0.0013 22.6 1.7 43 26-69 14-56 (183)
276 3ivp_A Putative transposon-rel 22.4 34 0.0012 22.1 1.4 23 44-66 28-50 (126)
277 3vk0_A NHTF, transcriptional r 22.3 33 0.0011 21.9 1.2 24 43-66 36-59 (114)
278 2eby_A Putative HTH-type trans 22.2 35 0.0012 21.5 1.4 24 43-66 26-49 (113)
279 3eus_A DNA-binding protein; st 22.2 36 0.0012 20.5 1.4 23 44-66 30-52 (86)
280 2dg7_A Putative transcriptiona 22.1 35 0.0012 23.2 1.4 42 26-68 13-54 (195)
281 3plu_A Ubiquitin-like modifier 22.0 27 0.00092 22.4 0.8 26 43-68 47-72 (93)
282 1iq3_A Ralbp1-interacting prot 22.0 22 0.00074 23.0 0.3 46 18-63 13-63 (110)
283 3g5g_A Regulatory protein; tra 21.9 37 0.0013 21.3 1.4 23 44-66 44-66 (99)
284 4aci_A HTH-type transcriptiona 21.8 47 0.0016 22.2 2.1 42 26-68 20-61 (191)
285 2eh3_A Transcriptional regulat 21.7 48 0.0017 22.1 2.1 43 26-69 8-50 (179)
286 3anp_C Transcriptional repress 21.7 45 0.0015 22.8 2.0 42 26-68 15-56 (204)
287 3dew_A Transcriptional regulat 21.7 34 0.0012 23.1 1.3 43 26-69 14-56 (206)
288 2jvl_A TRMBF1; coactivator, he 21.6 35 0.0012 21.7 1.3 23 44-66 52-74 (107)
289 2ras_A Transcriptional regulat 21.6 40 0.0014 23.1 1.7 42 26-68 17-58 (212)
290 2jrt_A Uncharacterized protein 21.5 99 0.0034 19.6 3.4 40 19-63 31-71 (95)
291 3b81_A Transcriptional regulat 21.4 43 0.0015 22.6 1.8 43 26-69 17-59 (203)
292 1vi0_A Transcriptional regulat 21.4 33 0.0011 23.8 1.2 42 26-68 14-55 (206)
293 3kkc_A TETR family transcripti 21.3 42 0.0015 22.2 1.7 44 26-70 18-61 (177)
294 2opt_A Actii protein; helical 21.3 63 0.0022 23.4 2.8 44 26-70 12-55 (234)
295 3qqa_A CMER; alpha-helical, he 21.2 51 0.0018 22.5 2.2 41 26-67 25-65 (216)
296 2o7t_A Transcriptional regulat 21.2 40 0.0014 23.0 1.6 42 26-68 14-55 (199)
297 4hku_A LMO2814 protein, TETR t 21.1 47 0.0016 22.4 2.0 42 26-68 13-54 (178)
298 3knw_A Putative transcriptiona 21.1 50 0.0017 22.4 2.1 41 26-67 20-60 (212)
299 3cdl_A Transcriptional regulat 21.0 42 0.0014 23.0 1.7 45 26-71 15-59 (203)
300 1neq_A DNA-binding protein NER 20.8 37 0.0013 20.3 1.2 22 43-64 24-45 (74)
301 2nx4_A Transcriptional regulat 20.7 53 0.0018 22.4 2.2 42 26-68 16-57 (194)
302 1irz_A ARR10-B; helix-turn-hel 20.7 1.4E+02 0.0049 17.6 4.5 57 15-71 4-62 (64)
303 3lhq_A Acrab operon repressor 20.6 52 0.0018 22.3 2.1 42 26-68 20-61 (220)
304 1rkt_A Protein YFIR; transcrip 20.4 45 0.0015 22.9 1.7 43 26-69 18-60 (205)
305 3crj_A Transcription regulator 20.3 45 0.0016 22.9 1.8 43 26-69 20-62 (199)
306 1tuz_A Diacylglycerol kinase a 20.3 53 0.0018 21.8 2.0 27 38-64 7-33 (118)
307 1xwr_A Regulatory protein CII; 20.2 57 0.0019 21.0 2.0 20 44-63 26-45 (97)
308 2g7s_A Transcriptional regulat 20.2 41 0.0014 22.4 1.4 41 26-67 14-54 (194)
309 2kn2_A Calmodulin; S MAPK phos 20.1 1.1E+02 0.0039 17.8 3.5 41 23-63 5-52 (92)
310 2cw1_A SN4M; lambda CRO fold, 20.1 39 0.0013 19.9 1.1 22 43-64 15-36 (65)
311 2a6h_F RNA polymerase sigma fa 20.0 70 0.0024 25.8 3.0 50 21-71 361-410 (423)
No 1
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.87 E-value=8.4e-22 Score=128.62 Aligned_cols=70 Identities=31% Similarity=0.584 Sum_probs=63.1
Q ss_pred CCCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHHHHHHHh
Q psy16514 10 KPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSKERELLA 79 (155)
Q Consensus 10 ~~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~~~~~~~ 79 (155)
.....+|.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||||||+|+|+........
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~~~ 72 (80)
T 2cue_A 3 SGSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQR 72 (80)
T ss_dssp SCCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhhcc
Confidence 3455677899999999999999999999999999999999999999999999999999999987665543
No 2
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.86 E-value=1e-21 Score=127.32 Aligned_cols=67 Identities=42% Similarity=0.739 Sum_probs=62.8
Q ss_pred CCCCCCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHH
Q psy16514 7 DRGKPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSK 73 (155)
Q Consensus 7 ~~~~~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~ 73 (155)
+.|.+++.+|.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||||||+|+|+..
T Consensus 2 s~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~ 68 (77)
T 1nk2_P 2 SDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQ 68 (77)
T ss_dssp CSCCSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhh
Confidence 4567788888999999999999999999999999999999999999999999999999999999854
No 3
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.86 E-value=7.3e-22 Score=125.79 Aligned_cols=64 Identities=34% Similarity=0.615 Sum_probs=59.8
Q ss_pred CCCCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 9 GKPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 9 ~~~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
+..++.+|.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 2 s~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (70)
T 2cra_A 2 SSGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKS 65 (70)
T ss_dssp CSSCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhccc
Confidence 4456677789999999999999999999999999999999999999999999999999999984
No 4
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.9e-21 Score=123.84 Aligned_cols=63 Identities=41% Similarity=0.731 Sum_probs=58.6
Q ss_pred CCCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 10 KPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 10 ~~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
.....+|.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||||||+|+|+.
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2dmu_A 3 SGSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65 (70)
T ss_dssp STTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehcccccccccccc
Confidence 345566779999999999999999999999999999999999999999999999999999984
No 5
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-21 Score=127.38 Aligned_cols=64 Identities=31% Similarity=0.504 Sum_probs=59.4
Q ss_pred CCCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHH
Q psy16514 10 KPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSK 73 (155)
Q Consensus 10 ~~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~ 73 (155)
...+.+|.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||||||+|+|+..
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 3 SGSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 3455677899999999999999999999999999999999999999999999999999999854
No 6
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.3e-21 Score=126.50 Aligned_cols=64 Identities=59% Similarity=0.997 Sum_probs=60.1
Q ss_pred CCCCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 9 GKPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 9 ~~~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
...++.+|.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||||||+|+|+.
T Consensus 12 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 12 TKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 3556778889999999999999999999999999999999999999999999999999999984
No 7
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.85 E-value=1.7e-21 Score=124.03 Aligned_cols=64 Identities=30% Similarity=0.462 Sum_probs=59.8
Q ss_pred CCCCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 9 GKPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 9 ~~~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
+...+.++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||||||+|+|+.
T Consensus 2 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 2 SSGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp CCSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhc
Confidence 4556677789999999999999999999999999999999999999999999999999999984
No 8
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=6.2e-22 Score=129.23 Aligned_cols=64 Identities=33% Similarity=0.506 Sum_probs=59.5
Q ss_pred CCCCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 9 GKPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 9 ~~~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
+...+.+|.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||||||+|+|+.
T Consensus 2 s~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~ 65 (80)
T 2dms_A 2 SSGSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 65 (80)
T ss_dssp CCCCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHH
Confidence 3445667789999999999999999999999999999999999999999999999999999984
No 9
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.85 E-value=4.4e-21 Score=124.32 Aligned_cols=71 Identities=34% Similarity=0.534 Sum_probs=63.2
Q ss_pred CCCCCCCCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHHHH
Q psy16514 5 IFDRGKPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSKER 75 (155)
Q Consensus 5 ~~~~~~~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~~~ 75 (155)
.......++.+|.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+..+.
T Consensus 4 ~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 4 AANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp TTTSCCCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 33444556667789999999999999999999999999999999999999999999999999999987643
No 10
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.85 E-value=1.7e-21 Score=123.98 Aligned_cols=64 Identities=31% Similarity=0.424 Sum_probs=59.7
Q ss_pred CCCCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 9 GKPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 9 ~~~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
+...+.+|.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 2 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 2 SSGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp CSSCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhh
Confidence 4455677789999999999999999999999999999999999999999999999999999984
No 11
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-21 Score=124.12 Aligned_cols=64 Identities=42% Similarity=0.756 Sum_probs=59.3
Q ss_pred CCCCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 9 GKPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 9 ~~~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
+...+.+|.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 2 s~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 2 SSGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CSCCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 3455667789999999999999999999999999999999999999999999999999999983
No 12
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.84 E-value=3.1e-21 Score=126.93 Aligned_cols=65 Identities=42% Similarity=0.539 Sum_probs=60.8
Q ss_pred CCCCCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 8 RGKPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 8 ~~~~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
.+.+++.+|.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||||||+|+|+.
T Consensus 16 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 80 (84)
T 2kt0_A 16 DKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRW 80 (84)
T ss_dssp CCCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 34566778889999999999999999999999999999999999999999999999999999984
No 13
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.84 E-value=4.7e-21 Score=122.02 Aligned_cols=62 Identities=52% Similarity=0.814 Sum_probs=57.8
Q ss_pred CCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 11 PRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 11 ~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
....++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 4 ~~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2e1o_A 4 GSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRS 65 (70)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCC
Confidence 34456678999999999999999999999999999999999999999999999999999984
No 14
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.84 E-value=3.7e-21 Score=120.08 Aligned_cols=59 Identities=46% Similarity=0.808 Sum_probs=55.3
Q ss_pred CCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 14 GMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 14 ~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
.+|.|+.||..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 45678999999999999999999999999999999999999999999999999999985
No 15
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.84 E-value=3.8e-21 Score=125.29 Aligned_cols=65 Identities=26% Similarity=0.435 Sum_probs=60.8
Q ss_pred CCCCCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 8 RGKPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 8 ~~~~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
+..+.+.+|.|+.||..|+.+|+..|..++||+..++..||..|||++.+|++||||||+|+|+.
T Consensus 11 ~~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 11 GEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp CCCCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 34567778889999999999999999999999999999999999999999999999999999984
No 16
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.84 E-value=6e-21 Score=122.51 Aligned_cols=62 Identities=34% Similarity=0.642 Sum_probs=58.5
Q ss_pred CCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 11 PRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 11 ~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
..+++|.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHH
Confidence 45567789999999999999999999999999999999999999999999999999999984
No 17
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.83 E-value=2.2e-21 Score=120.75 Aligned_cols=59 Identities=44% Similarity=0.592 Sum_probs=52.9
Q ss_pred CCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 14 GMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 14 ~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
.+|.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 45678999999999999999999999999999999999999999999999999999984
No 18
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.83 E-value=4.7e-21 Score=118.86 Aligned_cols=58 Identities=34% Similarity=0.689 Sum_probs=53.3
Q ss_pred CCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q psy16514 14 GMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRN 71 (155)
Q Consensus 14 ~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk 71 (155)
.+|.|+.||..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 3567899999999999999999999999999999999999999999999999999987
No 19
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.83 E-value=6.2e-21 Score=117.09 Aligned_cols=57 Identities=39% Similarity=0.678 Sum_probs=55.0
Q ss_pred CCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q psy16514 15 MMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRN 71 (155)
Q Consensus 15 ~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk 71 (155)
+|.|+.||..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467899999999999999999999999999999999999999999999999999987
No 20
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.83 E-value=1e-20 Score=123.67 Aligned_cols=65 Identities=31% Similarity=0.560 Sum_probs=58.8
Q ss_pred CCCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHHH
Q psy16514 10 KPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSKE 74 (155)
Q Consensus 10 ~~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~~ 74 (155)
..++.+|.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+...
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 34566778999999999999999999999999999999999999999999999999999998653
No 21
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.83 E-value=1.1e-20 Score=119.61 Aligned_cols=61 Identities=34% Similarity=0.585 Sum_probs=57.2
Q ss_pred CCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHHH
Q psy16514 14 GMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSKE 74 (155)
Q Consensus 14 ~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~~ 74 (155)
.+|.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 3567899999999999999999999999999999999999999999999999999998653
No 22
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.83 E-value=5.9e-21 Score=124.91 Aligned_cols=64 Identities=36% Similarity=0.635 Sum_probs=54.0
Q ss_pred CCCCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 9 GKPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 9 ~~~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
|.....+|.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||||||+|+|+.
T Consensus 15 ~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 15 GTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp ---------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 4445567789999999999999999999999999999999999999999999999999999985
No 23
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.83 E-value=1.5e-20 Score=126.02 Aligned_cols=64 Identities=45% Similarity=0.786 Sum_probs=60.1
Q ss_pred CCCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHH
Q psy16514 10 KPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSK 73 (155)
Q Consensus 10 ~~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~ 73 (155)
.+.+.+|.|+.||..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+..
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 76 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQT 76 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhh
Confidence 4556777899999999999999999999999999999999999999999999999999999864
No 24
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.83 E-value=9.8e-21 Score=117.03 Aligned_cols=58 Identities=43% Similarity=0.681 Sum_probs=55.1
Q ss_pred CCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 15 MMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 15 ~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
+|.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||+|+|+|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 4678999999999999999999999999999999999999999999999999999974
No 25
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.82 E-value=9.5e-21 Score=119.22 Aligned_cols=60 Identities=23% Similarity=0.387 Sum_probs=56.8
Q ss_pred CCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 13 RGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 13 ~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
+.+|.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 356779999999999999999999999999999999999999999999999999999874
No 26
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=8.2e-21 Score=123.86 Aligned_cols=63 Identities=24% Similarity=0.357 Sum_probs=58.7
Q ss_pred CCCCCCCCcccCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 10 KPRRGMMRRAVFSDLQRKGLEKRFQIQ----KYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 10 ~~~~~~r~R~~~t~~ql~~L~~~F~~~----~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
..++.+|.|+.|+..|+.+|+..|..+ +||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 345567789999999999999999999 999999999999999999999999999999999983
No 27
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.82 E-value=1.8e-20 Score=119.90 Aligned_cols=60 Identities=28% Similarity=0.426 Sum_probs=56.3
Q ss_pred CCCCcccCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHH
Q psy16514 14 GMMRRAVFSDLQRKGLEKRFQI-QKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSK 73 (155)
Q Consensus 14 ~~r~R~~~t~~ql~~L~~~F~~-~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~ 73 (155)
|.+.|+.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||||||+|+|+..
T Consensus 1 G~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 1 GSEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 3567899999999999999996 99999999999999999999999999999999999854
No 28
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.82 E-value=1.2e-20 Score=119.57 Aligned_cols=59 Identities=39% Similarity=0.781 Sum_probs=56.3
Q ss_pred CCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 14 GMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 14 ~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
++|.|+.||..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 60 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 60 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHh
Confidence 35678999999999999999999999999999999999999999999999999999984
No 29
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.82 E-value=7.3e-21 Score=120.46 Aligned_cols=61 Identities=33% Similarity=0.627 Sum_probs=57.3
Q ss_pred CCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHH
Q psy16514 13 RGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSK 73 (155)
Q Consensus 13 ~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~ 73 (155)
+.+|.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 3466789999999999999999999999999999999999999999999999999999854
No 30
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.82 E-value=2.4e-20 Score=118.08 Aligned_cols=59 Identities=47% Similarity=0.755 Sum_probs=56.3
Q ss_pred CCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 14 GMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 14 ~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
++|.|+.||..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 60 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 60 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhh
Confidence 35678999999999999999999999999999999999999999999999999999984
No 31
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.82 E-value=1.1e-20 Score=123.26 Aligned_cols=61 Identities=11% Similarity=0.183 Sum_probs=57.2
Q ss_pred CCCCCCCcccCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q psy16514 11 PRRGMMRRAVFSDLQRKGLEKRFQI----QKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRN 71 (155)
Q Consensus 11 ~~~~~r~R~~~t~~ql~~L~~~F~~----~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk 71 (155)
.++.+|.||.||..|+..|+..|.. ++||+..++..||..|||++++|+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 3456778999999999999999999 999999999999999999999999999999999885
No 32
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.82 E-value=3.2e-20 Score=119.44 Aligned_cols=62 Identities=37% Similarity=0.643 Sum_probs=57.8
Q ss_pred CCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 11 PRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 11 ~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
.++.+|.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 67 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 67 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHH
Confidence 34456679999999999999999999999999999999999999999999999999999984
No 33
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.82 E-value=2.4e-20 Score=114.20 Aligned_cols=56 Identities=50% Similarity=0.788 Sum_probs=53.7
Q ss_pred CCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q psy16514 15 MMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70 (155)
Q Consensus 15 ~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~r 70 (155)
+|.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|
T Consensus 3 rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 3 RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 56789999999999999999999999999999999999999999999999999975
No 34
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.82 E-value=1.9e-20 Score=124.27 Aligned_cols=63 Identities=37% Similarity=0.733 Sum_probs=54.8
Q ss_pred CCCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 10 KPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 10 ~~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
..+..+|.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||||||+|+|+.
T Consensus 24 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 24 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 345567789999999999999999999999999999999999999999999999999999984
No 35
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.82 E-value=1.4e-20 Score=116.69 Aligned_cols=59 Identities=25% Similarity=0.503 Sum_probs=48.5
Q ss_pred CCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q psy16514 12 RRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70 (155)
Q Consensus 12 ~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~r 70 (155)
++.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45567799999999999999999999999999999999999999999999999999975
No 36
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=7.4e-21 Score=122.69 Aligned_cols=59 Identities=19% Similarity=0.291 Sum_probs=55.2
Q ss_pred CCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 14 GMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 14 ~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
..++|+.||..|+.+|+..|..++||+..++..||..+||++++|++||||||+|+|+.
T Consensus 7 ~~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (75)
T 2da5_A 7 GPTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAE 65 (75)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHS
T ss_pred CCCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHh
Confidence 34457789999999999999999999999999999999999999999999999999984
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.81 E-value=2.6e-20 Score=117.57 Aligned_cols=58 Identities=36% Similarity=0.528 Sum_probs=55.8
Q ss_pred CCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 15 MMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 15 ~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
+|.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRS 59 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCS
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHh
Confidence 5679999999999999999999999999999999999999999999999999999984
No 38
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.81 E-value=2.2e-20 Score=115.46 Aligned_cols=57 Identities=39% Similarity=0.756 Sum_probs=50.7
Q ss_pred CcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHH
Q psy16514 17 RRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSK 73 (155)
Q Consensus 17 ~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~ 73 (155)
.|+.||..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+.+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 479999999999999999999999999999999999999999999999999999864
No 39
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.81 E-value=1.4e-20 Score=122.88 Aligned_cols=62 Identities=15% Similarity=0.227 Sum_probs=57.2
Q ss_pred CCCCCCCCCcccCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q psy16514 9 GKPRRGMMRRAVFSDLQRKGLEKRFQI-----QKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRN 71 (155)
Q Consensus 9 ~~~~~~~r~R~~~t~~ql~~L~~~F~~-----~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk 71 (155)
+...+.+|.||.||..|+..|+ .|.. ++||+..++..||..|||++.+|+|||||||+|+|+
T Consensus 12 ~~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 12 SSGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 3455667889999999999999 7999 999999999999999999999999999999999885
No 40
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.81 E-value=5.9e-20 Score=117.83 Aligned_cols=59 Identities=25% Similarity=0.346 Sum_probs=55.5
Q ss_pred CCCcccCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHH
Q psy16514 15 MMRRAVFSDLQRKGLEKRFQI-QKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSK 73 (155)
Q Consensus 15 ~r~R~~~t~~ql~~L~~~F~~-~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~ 73 (155)
.+.|+.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||||||+|+|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 456899999999999999995 99999999999999999999999999999999999854
No 41
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=9.2e-20 Score=116.85 Aligned_cols=64 Identities=22% Similarity=0.330 Sum_probs=58.7
Q ss_pred CCCCCCCCCcccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 9 GKPRRGMMRRAVFSDLQRKGLEKRFQI---QKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 9 ~~~~~~~r~R~~~t~~ql~~L~~~F~~---~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
+..++.++.|+.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||||+|+|+|+.
T Consensus 2 ~~~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 68 (73)
T 1x2n_A 2 SSGSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQS 68 (73)
T ss_dssp CCCSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccc
Confidence 345566778999999999999999976 9999999999999999999999999999999999973
No 42
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.80 E-value=5.3e-20 Score=112.24 Aligned_cols=54 Identities=50% Similarity=0.824 Sum_probs=50.9
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 19 AVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 19 ~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
|.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+||.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 689999999999999999999999999999999999999999999999999984
No 43
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=7.7e-20 Score=122.96 Aligned_cols=65 Identities=20% Similarity=0.317 Sum_probs=60.2
Q ss_pred CCCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC---------------CCccchhhhhhhhHHHHhhHHH
Q psy16514 10 KPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLG---------------LKDSQVKIWFQNRRMKWRNSKE 74 (155)
Q Consensus 10 ~~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~---------------l~~~~V~~WFqNrR~k~rk~~~ 74 (155)
..++.+|.|+.|+..|+.+|+..|..++||+..++..||..|+ |++.+|++||||||+|+|+...
T Consensus 3 ~~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 3 SGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SSSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 4556677899999999999999999999999999999999999 9999999999999999998654
No 44
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.80 E-value=4.9e-20 Score=124.17 Aligned_cols=65 Identities=22% Similarity=0.356 Sum_probs=56.3
Q ss_pred CCCCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHH
Q psy16514 9 GKPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSK 73 (155)
Q Consensus 9 ~~~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~ 73 (155)
+....++|.|+.|+..|+.+|+..|..++||+..++..||..|||++++|++||||||+|+|+.+
T Consensus 20 ~~~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 20 APKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp -------CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 44556677899999999999999999999999999999999999999999999999999999864
No 45
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=6.1e-20 Score=118.20 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=53.4
Q ss_pred CcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 17 RRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 17 ~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
.|+.||..|+.+|+..|..++||+..++..||..+||++++|++||||+|+|+|+.
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 35779999999999999999999999999999999999999999999999999984
No 46
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=121.89 Aligned_cols=69 Identities=23% Similarity=0.289 Sum_probs=62.6
Q ss_pred CCCCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHh---------------------CCCccchhhhhhhhHH
Q psy16514 9 GKPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKL---------------------GLKDSQVKIWFQNRRM 67 (155)
Q Consensus 9 ~~~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l---------------------~l~~~~V~~WFqNrR~ 67 (155)
|..++.+|.|+.|++.|+.+|+..|..++||+..++..||..| +|++.+|++||||||+
T Consensus 1 ~~~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~ 80 (102)
T 2da6_A 1 GSSGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 80 (102)
T ss_dssp CTTCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHH
Confidence 4566778889999999999999999999999999999999999 7999999999999999
Q ss_pred HHhhHHHHHH
Q psy16514 68 KWRNSKEREL 77 (155)
Q Consensus 68 k~rk~~~~~~ 77 (155)
++|+.....+
T Consensus 81 k~kr~~~~~~ 90 (102)
T 2da6_A 81 EEAFRQKLAM 90 (102)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhhHhhh
Confidence 9998765543
No 47
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=9e-20 Score=123.06 Aligned_cols=62 Identities=42% Similarity=0.648 Sum_probs=55.2
Q ss_pred CCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHH
Q psy16514 12 RRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSK 73 (155)
Q Consensus 12 ~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~ 73 (155)
...++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||||||+|+|+..
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 34566799999999999999999999999999999999999999999999999999999854
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-19 Score=116.70 Aligned_cols=59 Identities=24% Similarity=0.357 Sum_probs=56.0
Q ss_pred CCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 14 GMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 14 ~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 64 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNS 64 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhh
Confidence 35568999999999999999999999999999999999999999999999999999984
No 49
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=6.7e-20 Score=121.65 Aligned_cols=55 Identities=13% Similarity=0.238 Sum_probs=52.5
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHH
Q psy16514 19 AVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSK 73 (155)
Q Consensus 19 ~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~ 73 (155)
..||..|+.+|+..|..++||+..++..||..|||+++||+|||||||+|+|+..
T Consensus 16 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 3899999999999999999999999999999999999999999999999999843
No 50
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=2.1e-19 Score=112.15 Aligned_cols=62 Identities=19% Similarity=0.177 Sum_probs=56.9
Q ss_pred CCCCCCCCCcccCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q psy16514 9 GKPRRGMMRRAVFSDLQRKGLEKRFQI-QKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70 (155)
Q Consensus 9 ~~~~~~~r~R~~~t~~ql~~L~~~F~~-~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~r 70 (155)
|..+..+|.||.|+.+||.+|+..|+. ++||+...+..||.++||++++|++||||+|.-.+
T Consensus 2 ~~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 2 SSGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 445567788999999999999999999 99999999999999999999999999999997654
No 51
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.5e-19 Score=115.71 Aligned_cols=56 Identities=25% Similarity=0.417 Sum_probs=54.1
Q ss_pred CcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 17 RRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 17 ~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
.|+.||..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 11 ~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~ 66 (76)
T 2dn0_A 11 YKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNL 66 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSC
T ss_pred CCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHh
Confidence 47999999999999999999999999999999999999999999999999999984
No 52
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.78 E-value=1.3e-19 Score=113.33 Aligned_cols=58 Identities=28% Similarity=0.512 Sum_probs=55.2
Q ss_pred CCCCcccCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q psy16514 14 GMMRRAVFSDLQRKGLEKRF---QIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRN 71 (155)
Q Consensus 14 ~~r~R~~~t~~ql~~L~~~F---~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk 71 (155)
+++.|+.|+..|+.+|+..| ..++||+..++..||..+||++.+|++||+|+|+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 45678999999999999999 89999999999999999999999999999999999886
No 53
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.77 E-value=4.7e-19 Score=113.54 Aligned_cols=58 Identities=29% Similarity=0.528 Sum_probs=55.4
Q ss_pred CCCcccCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 15 MMRRAVFSDLQRKGLEKRF---QIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 15 ~r~R~~~t~~ql~~L~~~F---~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
+|.|+.|+..|+.+|+..| ..++||+..++..||..+||++.+|++||||+|+|+|+.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 62 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 62 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccc
Confidence 4678999999999999999 899999999999999999999999999999999999974
No 54
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.77 E-value=4.5e-19 Score=128.57 Aligned_cols=64 Identities=25% Similarity=0.497 Sum_probs=60.0
Q ss_pred CCCCCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q psy16514 8 RGKPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRN 71 (155)
Q Consensus 8 ~~~~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk 71 (155)
++.+++.+|+|+.|+..|+.+|+..|..++||+..++..||..+||++++|++||||||+|+||
T Consensus 87 ~~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 87 GGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CSSCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 3456677888999999999999999999999999999999999999999999999999999986
No 55
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.77 E-value=7.9e-19 Score=115.25 Aligned_cols=63 Identities=24% Similarity=0.295 Sum_probs=57.1
Q ss_pred CCCCCCCCcccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 10 KPRRGMMRRAVFSDLQRKGLEKRFQI---QKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 10 ~~~~~~r~R~~~t~~ql~~L~~~F~~---~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
...+.+++|+.|+..|+.+|+..|.. ++||+..++..||..+||++.||++||||+|+|+++.
T Consensus 3 ~~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~ 68 (83)
T 2dmn_A 3 SGSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPD 68 (83)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHH
Confidence 34455677899999999999999987 6999999999999999999999999999999999873
No 56
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.77 E-value=5.1e-19 Score=109.19 Aligned_cols=54 Identities=26% Similarity=0.380 Sum_probs=52.7
Q ss_pred cccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q psy16514 18 RAVFSDLQRKGLEKRFQI---QKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRN 71 (155)
Q Consensus 18 R~~~t~~ql~~L~~~F~~---~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk 71 (155)
|+.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||+|+|+|+|+
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 689999999999999999 999999999999999999999999999999999987
No 57
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.77 E-value=1.9e-19 Score=119.07 Aligned_cols=59 Identities=29% Similarity=0.508 Sum_probs=55.6
Q ss_pred CCCcccCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHH
Q psy16514 15 MMRRAVFSDLQRKGLEKRF---QIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSK 73 (155)
Q Consensus 15 ~r~R~~~t~~ql~~L~~~F---~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~ 73 (155)
+|.|+.|+..|+.+|+..| ..++||+..++..||..+||++.+|++||||||+|+|+..
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 63 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcc
Confidence 4678999999999999999 8999999999999999999999999999999999999864
No 58
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.77 E-value=2e-19 Score=129.81 Aligned_cols=64 Identities=30% Similarity=0.479 Sum_probs=55.6
Q ss_pred CCCCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 9 GKPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 9 ~~~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
+..++.+|.|+.|+..|+..|+..|..++||+..++..||..+||++++|++||||||+|+||.
T Consensus 82 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 82 GANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 4556677889999999999999999999999999999999999999999999999999999974
No 59
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=1.5e-19 Score=115.68 Aligned_cols=58 Identities=26% Similarity=0.417 Sum_probs=54.4
Q ss_pred CCCCcccCCHHHHHHHHHHH-hhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q psy16514 14 GMMRRAVFSDLQRKGLEKRF-QIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRN 71 (155)
Q Consensus 14 ~~r~R~~~t~~ql~~L~~~F-~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk 71 (155)
+.+.|.+++..|+..|+..| ..++||+..++..||..+||++++|++||||||+|+|+
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~ 66 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKP 66 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCC
Confidence 45567788999999999999 99999999999999999999999999999999999996
No 60
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.76 E-value=1.1e-18 Score=115.51 Aligned_cols=59 Identities=25% Similarity=0.353 Sum_probs=55.0
Q ss_pred CCCCCcccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q psy16514 13 RGMMRRAVFSDLQRKGLEKRFQI---QKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRN 71 (155)
Q Consensus 13 ~~~r~R~~~t~~ql~~L~~~F~~---~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk 71 (155)
+.+++|+.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||||||+|+|.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 34556899999999999999999 999999999999999999999999999999999873
No 61
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.76 E-value=5.4e-19 Score=129.78 Aligned_cols=64 Identities=27% Similarity=0.323 Sum_probs=51.6
Q ss_pred CCCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHH
Q psy16514 10 KPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSK 73 (155)
Q Consensus 10 ~~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~ 73 (155)
..++.+|+|++|+..|+..|+..|..++||+..++..||..+||++++|++||||||+|+||..
T Consensus 95 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 95 AQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp -----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred ccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 3566777899999999999999999999999999999999999999999999999999999853
No 62
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.76 E-value=1e-18 Score=109.07 Aligned_cols=52 Identities=23% Similarity=0.417 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHH
Q psy16514 22 SDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSK 73 (155)
Q Consensus 22 t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~ 73 (155)
|..|+..|+..|..++||+..++.+||..+||++++|++||||||+|+|+..
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 6899999999999999999999999999999999999999999999999753
No 63
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.75 E-value=1e-18 Score=127.84 Aligned_cols=61 Identities=28% Similarity=0.441 Sum_probs=54.7
Q ss_pred CCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 12 RRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 12 ~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
.+.+|.|+.|+..|+.+|+..|..++||+..++..||..+||++++|++||||||+|+||.
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4667789999999999999999999999999999999999999999999999999999984
No 64
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=8.7e-19 Score=116.49 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=52.5
Q ss_pred cccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHH
Q psy16514 18 RAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSK 73 (155)
Q Consensus 18 R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~ 73 (155)
+..||..|+.+|+..|..++||+..++..||..+||++++|++||||||+|+|+.+
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 34599999999999999999999999999999999999999999999999999843
No 65
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.74 E-value=2.1e-18 Score=113.20 Aligned_cols=57 Identities=25% Similarity=0.356 Sum_probs=53.5
Q ss_pred CCcccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 16 MRRAVFSDLQRKGLEKRFQI---QKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 16 r~R~~~t~~ql~~L~~~F~~---~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
++|++|+..|+.+|+..|.. ++||+..++..||..+||++.||++||||||+|+|+.
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~ 63 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTI 63 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccc
Confidence 34677999999999999999 9999999999999999999999999999999999985
No 66
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.74 E-value=8.2e-19 Score=118.70 Aligned_cols=64 Identities=28% Similarity=0.419 Sum_probs=53.7
Q ss_pred CCCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH------------------hC---CCccchhhhhhhhHHH
Q psy16514 10 KPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEK------------------LG---LKDSQVKIWFQNRRMK 68 (155)
Q Consensus 10 ~~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~------------------l~---l~~~~V~~WFqNrR~k 68 (155)
..++.+|.|+.|+..|+..|+..|..++||+..++..||.. || |++.+|++||||||++
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 34566778999999999999999999999999999999999 88 9999999999999999
Q ss_pred HhhHH
Q psy16514 69 WRNSK 73 (155)
Q Consensus 69 ~rk~~ 73 (155)
.|+..
T Consensus 85 ~k~k~ 89 (99)
T 1lfb_A 85 EAFRH 89 (99)
T ss_dssp TSCCC
T ss_pred HHHhc
Confidence 88754
No 67
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.73 E-value=3.3e-18 Score=108.48 Aligned_cols=54 Identities=48% Similarity=0.765 Sum_probs=51.9
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 19 AVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 19 ~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
..+|..|+..|+..|..++||+..++..||..+||++++|++||||||+|+|+.
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~ 62 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRK 62 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhh
Confidence 568999999999999999999999999999999999999999999999999984
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.2e-18 Score=106.55 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=50.2
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q psy16514 19 AVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRN 71 (155)
Q Consensus 19 ~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk 71 (155)
..++..|+..|+..|..++||+..++..||..+||++++|++||||||+|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 45679999999999999999999999999999999999999999999999775
No 69
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.72 E-value=3.7e-18 Score=124.24 Aligned_cols=61 Identities=30% Similarity=0.430 Sum_probs=57.1
Q ss_pred CCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 12 RRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 12 ~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
.+.+|.|+.|+..|+..|+..|..++||+..++..||..+||++++|++||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4566779999999999999999999999999999999999999999999999999999974
No 70
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=3.4e-18 Score=106.60 Aligned_cols=49 Identities=24% Similarity=0.346 Sum_probs=46.2
Q ss_pred HHHHHHHHHHH-hhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q psy16514 23 DLQRKGLEKRF-QIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRN 71 (155)
Q Consensus 23 ~~ql~~L~~~F-~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk 71 (155)
..|+..|+..| ..++||+..++..||..|||+++||++||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 45899999999 67999999999999999999999999999999999986
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.70 E-value=7.6e-18 Score=123.54 Aligned_cols=62 Identities=31% Similarity=0.369 Sum_probs=54.7
Q ss_pred CCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 11 PRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 11 ~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
..+.+|.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~ 155 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDK 155 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhcccccc
Confidence 44567789999999999999999999999999999999999999999999999999999984
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=1.5e-16 Score=100.24 Aligned_cols=54 Identities=26% Similarity=0.420 Sum_probs=49.7
Q ss_pred ccCCHHHHHHHHHHHh---hcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 19 AVFSDLQRKGLEKRFQ---IQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 19 ~~~t~~ql~~L~~~F~---~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
..|+..|+.+|+..|. .++||+..++..||..+||++.||++||+|+|+|+|+.
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~ 59 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQP 59 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSC
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHH
Confidence 4799999999999999 99999999999999999999999999999999999974
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.58 E-value=4.4e-16 Score=116.87 Aligned_cols=60 Identities=27% Similarity=0.383 Sum_probs=53.5
Q ss_pred CCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC---------------------CCccchhhhhhhhHHHHh
Q psy16514 12 RRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLG---------------------LKDSQVKIWFQNRRMKWR 70 (155)
Q Consensus 12 ~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~---------------------l~~~~V~~WFqNrR~k~r 70 (155)
++.||.|+.|++.|+..|+..|..++||+..+|..||..++ |++.+|++||||||++.+
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k 192 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhh
Confidence 56678899999999999999999999999999999999999 999999999999999876
Q ss_pred h
Q psy16514 71 N 71 (155)
Q Consensus 71 k 71 (155)
.
T Consensus 193 ~ 193 (194)
T 1ic8_A 193 F 193 (194)
T ss_dssp -
T ss_pred c
Confidence 4
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.7e-15 Score=94.13 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 23 DLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 23 ~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
..|+.+|+.+|..+++|+..++..||..+||..++|++||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999974
No 75
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.52 E-value=3.8e-14 Score=93.56 Aligned_cols=56 Identities=20% Similarity=0.224 Sum_probs=52.1
Q ss_pred ccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHHH
Q psy16514 19 AVFSDLQRKGLEKRFQI---QKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSKE 74 (155)
Q Consensus 19 ~~~t~~ql~~L~~~F~~---~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~~ 74 (155)
..|+..++.+|+..|.. ++||+..++..||..+||++.||++||+|+|.|.++...
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 57899999999999987 999999999999999999999999999999999987543
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.51 E-value=9.6e-15 Score=111.01 Aligned_cols=60 Identities=25% Similarity=0.343 Sum_probs=53.0
Q ss_pred CCCCCCCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC---------------------CCccchhhhhhhhHHH
Q psy16514 10 KPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLG---------------------LKDSQVKIWFQNRRMK 68 (155)
Q Consensus 10 ~~~~~~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~---------------------l~~~~V~~WFqNrR~k 68 (155)
..++.||.|+.|++.|+.+|+..|..++||+..+|+.||..+| |++.+|++||+|||++
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 4567788899999999999999999999999999999999988 8999999999999976
Q ss_pred H
Q psy16514 69 W 69 (155)
Q Consensus 69 ~ 69 (155)
.
T Consensus 218 ~ 218 (221)
T 2h8r_A 218 E 218 (221)
T ss_dssp C
T ss_pred h
Confidence 3
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.40 E-value=1.2e-13 Score=112.62 Aligned_cols=54 Identities=30% Similarity=0.550 Sum_probs=51.4
Q ss_pred CcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q psy16514 17 RRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70 (155)
Q Consensus 17 ~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~r 70 (155)
.++.|+..|+..|++.|..++||+..+|.+||..+||+++||++||||||+|+|
T Consensus 368 ~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 368 AAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 467899999999999999999999999999999999999999999999999875
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.82 E-value=6.5e-10 Score=61.36 Aligned_cols=20 Identities=60% Similarity=1.159 Sum_probs=17.8
Q ss_pred cchhhhhhhhHHHHhhHHHH
Q psy16514 56 SQVKIWFQNRRMKWRNSKER 75 (155)
Q Consensus 56 ~~V~~WFqNrR~k~rk~~~~ 75 (155)
+||+|||||||+|+|+.+..
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 58999999999999997655
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.45 E-value=0.0029 Score=39.25 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=39.9
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhh
Q psy16514 20 VFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQN 64 (155)
Q Consensus 20 ~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqN 64 (155)
..++.-..+|+.+|...+.+.......|..+.+|+..||+.||-.
T Consensus 12 ~~~p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 12 PPPPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 344455689999999999999999999999999999999999954
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=89.69 E-value=0.44 Score=27.70 Aligned_cols=46 Identities=17% Similarity=0.343 Sum_probs=32.0
Q ss_pred cccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhh
Q psy16514 18 RAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQN 64 (155)
Q Consensus 18 R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqN 64 (155)
|..|+.++...+..++.. ..........+|..+|++...|..|.+.
T Consensus 3 r~~ys~efK~~~~~~~~~-g~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN-DNDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-CTTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHc-CCCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 457888887666444443 3322223678999999999999999753
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=89.49 E-value=0.82 Score=30.59 Aligned_cols=49 Identities=10% Similarity=0.241 Sum_probs=38.0
Q ss_pred CcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 17 RRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 17 ~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+|..||.++...+...+..+.... ...||..+|++...|..|..++...
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 467899999887777775555544 3368999999999999999876543
No 82
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=89.38 E-value=0.92 Score=28.51 Aligned_cols=44 Identities=11% Similarity=0.251 Sum_probs=31.8
Q ss_pred CCCcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhh
Q psy16514 15 MMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQ 63 (155)
Q Consensus 15 ~r~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFq 63 (155)
++.+..|+.++...+...+. ... ....+|..+|++...|..|..
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~-~g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIH-DGE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHH-HTC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH-CCC----CHHHHHHHHCcCHHHHHHHHH
Confidence 34466889988655555564 222 356789999999999999984
No 83
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=89.15 E-value=1.1 Score=28.34 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=36.8
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 20 VFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 20 ~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
.+++.+..+|...|.... ...++|..+|++...|+.+...-|.+.|+.
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 366777777777554332 567899999999999999998888777764
No 84
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=85.92 E-value=1.4 Score=25.72 Aligned_cols=47 Identities=13% Similarity=-0.006 Sum_probs=37.2
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q psy16514 20 VFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRN 71 (155)
Q Consensus 20 ~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk 71 (155)
.+++.+..+|...|... ....++|..+|++...|+.+...-+.+.++
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 46788888888776433 246788999999999999999887777765
No 85
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=82.83 E-value=2.3 Score=22.55 Aligned_cols=40 Identities=13% Similarity=0.318 Sum_probs=28.6
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhh
Q psy16514 20 VFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQN 64 (155)
Q Consensus 20 ~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqN 64 (155)
.++..+...+...+... + ....+|..+|++...|..|++.
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 46677765555555432 2 3667899999999999999854
No 86
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=81.56 E-value=2.9 Score=27.72 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=38.6
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 20 VFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 20 ~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
.+++.+..++...|.... ...++|..+|++...|+.|...-|.+.++.
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 478888888887765442 467899999999999999999888877764
No 87
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=80.37 E-value=3.5 Score=24.57 Aligned_cols=50 Identities=10% Similarity=0.093 Sum_probs=37.4
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q psy16514 20 VFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70 (155)
Q Consensus 20 ~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~r 70 (155)
.+++.+..+|...|-.... ....-.++|..+|++...|+.|...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4788899999888852100 0124568899999999999999987777766
No 88
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=80.09 E-value=2.8 Score=25.88 Aligned_cols=50 Identities=20% Similarity=0.198 Sum_probs=39.0
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHHH
Q psy16514 19 AVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSKE 74 (155)
Q Consensus 19 ~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~~ 74 (155)
..+++.+..+|..++. . ....++|..+|++...|+.+..+-+.|.+....
T Consensus 20 ~~Lt~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 69 (82)
T 1je8_A 20 NQLTPRERDILKLIAQ--G----LPNKMIARRLDITESTVKVHVKHMLKKMKLKSR 69 (82)
T ss_dssp GGSCHHHHHHHHHHTT--T----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSH
T ss_pred ccCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 4689999999888532 2 256789999999999999999888777765443
No 89
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=79.93 E-value=2.5 Score=24.89 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=37.6
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q psy16514 20 VFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRN 71 (155)
Q Consensus 20 ~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk 71 (155)
.+++.+..+|...|....+ ....-.++|..+|++...|+.+...-+.|.++
T Consensus 5 ~L~~~er~il~l~~~l~~~-~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4678888999888732111 11245778999999999999999877777665
No 90
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=79.66 E-value=0.82 Score=24.89 Aligned_cols=43 Identities=14% Similarity=0.274 Sum_probs=29.2
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHH
Q psy16514 20 VFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRM 67 (155)
Q Consensus 20 ~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~ 67 (155)
.++..+...+...+... .....||..+|++...|..|+.....
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHccc
Confidence 35555655555555432 24568899999999999999975443
No 91
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=79.22 E-value=5.1 Score=27.47 Aligned_cols=51 Identities=18% Similarity=0.352 Sum_probs=38.5
Q ss_pred CCCcccCCHHHHHHHHHHH-hhcCCCCHHHHHHHH-HHh--CCCccchhhhhhhh
Q psy16514 15 MMRRAVFSDLQRKGLEKRF-QIQKYISKPDRKKLA-EKL--GLKDSQVKIWFQNR 65 (155)
Q Consensus 15 ~r~R~~~t~~ql~~L~~~F-~~~~~p~~~~~~~LA-~~l--~l~~~~V~~WFqNr 65 (155)
+++|.++|-+|...|..++ ..++..+..+...+| ..+ +++...|..|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 4568999999999999999 677776655544433 267 77888999999763
No 92
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=78.94 E-value=3.4 Score=25.69 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=37.7
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q psy16514 20 VFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRN 71 (155)
Q Consensus 20 ~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk 71 (155)
.+++.+..+|...|-.... ......++|..+|++...|+.+...-+.+.|+
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4678888888888752100 01246788999999999999999887777765
No 93
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=78.80 E-value=3.2 Score=26.19 Aligned_cols=42 Identities=14% Similarity=0.347 Sum_probs=30.2
Q ss_pred cccCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHhCCCccchhhhhh
Q psy16514 18 RAVFSDLQRKGLEKRFQIQ-KYISKPDRKKLAEKLGLKDSQVKIWFQ 63 (155)
Q Consensus 18 R~~~t~~ql~~L~~~F~~~-~~p~~~~~~~LA~~l~l~~~~V~~WFq 63 (155)
|..|+.++....-..+... . .....+|..+|++...|..|.+
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g----~s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG----ASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG----SCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC----ChHHHHHHHHCcCHHHHHHHHH
Confidence 3568888866555555322 2 2467899999999999999985
No 94
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=78.70 E-value=4.6 Score=27.11 Aligned_cols=47 Identities=17% Similarity=0.106 Sum_probs=33.9
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 20 VFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 20 ~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
.+++.+..+|. .|- ......++|..+|++...|+.+...-+.+.|+.
T Consensus 109 ~L~~~~r~v~~-~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLI-----RGYSYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHH-HHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 35566666665 333 233567899999999999999998777777653
No 95
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=77.35 E-value=3.4 Score=26.18 Aligned_cols=46 Identities=20% Similarity=0.143 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q psy16514 20 VFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRN 71 (155)
Q Consensus 20 ~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk 71 (155)
.+++.+..+|.-++..- ...++|..+|++...|+.+..+-+.|.+.
T Consensus 27 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 57889988888864322 35789999999999999999887777665
No 96
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=77.21 E-value=3.6 Score=24.19 Aligned_cols=50 Identities=18% Similarity=0.210 Sum_probs=38.0
Q ss_pred cccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHH
Q psy16514 18 RAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSK 73 (155)
Q Consensus 18 R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~ 73 (155)
-..+++.+..+|..++. .+ ...++|..+|++...|+.++.+-+.|.+...
T Consensus 9 ~~~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 58 (74)
T 1fse_A 9 KPLLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHISNAMQKLGVKG 58 (74)
T ss_dssp CCCCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Confidence 35688999999988432 22 4568999999999999999988777766543
No 97
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=77.10 E-value=4.3 Score=26.76 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=37.7
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 20 VFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 20 ~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
.+++.+..+|...|.... ...++|..+|++...|+.+...-|.+.++.
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 467778778777654432 467899999999999999999888887764
No 98
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=76.65 E-value=5.6 Score=25.64 Aligned_cols=49 Identities=14% Similarity=-0.048 Sum_probs=38.0
Q ss_pred cccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 18 RAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 18 R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
...+++.++.+|.-.+.-- ...++|..+|++...|+.+..+-+.|..-.
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 3568999999997765322 347899999999999999998777665543
No 99
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=75.28 E-value=1.6 Score=30.45 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=34.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+.+-...|....| . .....||...|++...|..+|.|+-.=
T Consensus 21 l~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~L 61 (194)
T 2q24_A 21 LAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREAL 61 (194)
T ss_dssp HHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHHH
Confidence 5666677888998 5 789999999999999999999987653
No 100
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=74.18 E-value=3.8 Score=24.51 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHHH
Q psy16514 20 VFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSKE 74 (155)
Q Consensus 20 ~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~~ 74 (155)
.+++.+..+|.-+|. . ....++|..+|++...|+.++.+-+.|.+....
T Consensus 16 ~L~~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~ 64 (79)
T 1x3u_A 16 TLSERERQVLSAVVA--G----LPNKSIAYDLDISPRTVEVHRANVMAKMKAKSL 64 (79)
T ss_dssp HHCHHHHHHHHHHTT--T----CCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSH
T ss_pred hCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 367778888877432 2 245689999999999999999888877775443
No 101
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=73.46 E-value=0.8 Score=32.09 Aligned_cols=41 Identities=10% Similarity=0.127 Sum_probs=34.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+.+....|....| . .....||...|++...|...|.|+-.=
T Consensus 22 l~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK~~L 62 (199)
T 2rek_A 22 IEAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSRWGL 62 (199)
T ss_dssp HHHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCHHHH
Confidence 5566667888999 5 688999999999999999999987653
No 102
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=71.31 E-value=6.6 Score=27.35 Aligned_cols=46 Identities=13% Similarity=0.026 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q psy16514 21 FSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRN 71 (155)
Q Consensus 21 ~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk 71 (155)
+++.+..+|.-.|-.. ..-.++|..+|++...|+.+...-|.+.|+
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3444445554443322 245688999999999999999988877765
No 103
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=71.31 E-value=6.2 Score=28.35 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 21 FSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 21 ~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
+++.+..+|...|... ....++|..+|++...|+.+...-+.+.|+.
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4566666666655332 3566889999999999999998888777763
No 104
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=69.38 E-value=7.6 Score=24.83 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=30.9
Q ss_pred cccCCHHHHHHHHHHH-hhc-CCCCH-HHHHHHHHHhCCCccchhhhhh
Q psy16514 18 RAVFSDLQRKGLEKRF-QIQ-KYISK-PDRKKLAEKLGLKDSQVKIWFQ 63 (155)
Q Consensus 18 R~~~t~~ql~~L~~~F-~~~-~~p~~-~~~~~LA~~l~l~~~~V~~WFq 63 (155)
+..|+.++....-..+ ... .+.+. .....+|..+|++...|..|.+
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 3568888865444444 321 13332 4567899999999999999974
No 105
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=69.32 E-value=2.3 Score=29.80 Aligned_cols=41 Identities=15% Similarity=0.373 Sum_probs=32.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRM 67 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~ 67 (155)
+.+....|....|-. .....||...|++...+..+|.++-.
T Consensus 37 l~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~ 77 (218)
T 3dcf_A 37 IKVATELFREKGYYA-TSLDDIADRIGFTKPAIYYYFKSKED 77 (218)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCccc-CcHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 556666688877754 45778899999999999999998765
No 106
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=69.28 E-value=3.1 Score=26.00 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=36.8
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 19 AVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 19 ~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
..+++.+..+|.-++. .+ ...++|..+|++...|+.+..+-+.|.+..
T Consensus 28 ~~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 28 EMLTEREMEILLLIAK--GY----SNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp GGCCSHHHHHHHHHHT--TC----CTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred hcCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 4578889888877543 22 345789999999999999998877776654
No 107
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=68.80 E-value=3.5 Score=25.39 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=36.5
Q ss_pred cccCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHhCCCccchhhhhh
Q psy16514 18 RAVFSDLQRKGLEKRFQ-----IQKYISKPDRKKLAEKLGLKDSQVKIWFQ 63 (155)
Q Consensus 18 R~~~t~~ql~~L~~~F~-----~~~~p~~~~~~~LA~~l~l~~~~V~~WFq 63 (155)
-..++..++..|...|. .+.+.+..+...+...+|++...|..+|.
T Consensus 18 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 18 GADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp -CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 35678888999999985 35688888888888889988888877774
No 108
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=68.66 E-value=1.9 Score=31.08 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=31.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRM 67 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~ 67 (155)
+.+....|....|-. .....||...|++...|..+|.++-.
T Consensus 49 l~aA~~l~~~~G~~~-~tv~~IA~~AGvs~~t~Y~~F~sKe~ 89 (229)
T 3bni_A 49 LDACADLLDEVGYDA-LSTRAVALRADVPIGSVYRFFGNKRQ 89 (229)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhcChhh-ccHHHHHHHHCCCchhHHHHcCCHHH
Confidence 445555677777655 44677899999999999999998765
No 109
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=67.86 E-value=2.4 Score=30.60 Aligned_cols=56 Identities=11% Similarity=0.117 Sum_probs=36.9
Q ss_pred CCCCcccCCHHH-HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q psy16514 14 GMMRRAVFSDLQ-RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70 (155)
Q Consensus 14 ~~r~R~~~t~~q-l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~r 70 (155)
..+.|...+..+ +......|....|-. .....||...|++...|..+|.+|-.=..
T Consensus 18 ~~~~r~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~~K~~L~~ 74 (211)
T 3fiw_A 18 YFQGMTKMNRETVITEALDLLDEVGLDG-VSTRRLAKRLGVEQPSLYWYFRTKRDLLT 74 (211)
T ss_dssp ------CCCHHHHHHHHHHHHHHHCGGG-CCHHHHHHHHTSCTHHHHTTCSSHHHHHH
T ss_pred CcccccccCHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCCChhHHHHHcCCHHHHHH
Confidence 333445556555 556666677776643 45778899999999999999998765443
No 110
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=62.71 E-value=5.2 Score=28.63 Aligned_cols=44 Identities=11% Similarity=0.087 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 25 QRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 25 ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
-+.+....|....|-. .....||...|++...|...|.++-.=.
T Consensus 35 Il~aA~~lf~~~G~~~-~t~~~IA~~Agvs~~t~Y~~F~sKe~Ll 78 (230)
T 2iai_A 35 LLSVAVQVFIERGYDG-TSMEHLSKAAGISKSSIYHHVTGKEELL 78 (230)
T ss_dssp HHHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHTTTCSSHHHHH
T ss_pred HHHHHHHHHHHcCccc-cCHHHHHHHHCCChhHHHHhCCCHHHHH
Confidence 3667777788887765 4567789999999999999999876543
No 111
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=62.43 E-value=4.8 Score=28.25 Aligned_cols=42 Identities=10% Similarity=0.096 Sum_probs=32.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+.+....|....|-. .....||...|++...|..+|.++-.=
T Consensus 36 l~aA~~l~~~~G~~~-~t~~~IA~~aGvs~~t~Y~~F~sK~~L 77 (222)
T 3bru_A 36 IRAGLEHLTEKGYSS-VGVDEILKAARVPKGSFYHYFRNKADF 77 (222)
T ss_dssp HHHHHHHHHHSCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCCCc-CcHHHHHHHhCCCcchhhhhCCCHHHH
Confidence 555566688877654 457788999999999999999997653
No 112
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=62.26 E-value=17 Score=23.01 Aligned_cols=46 Identities=15% Similarity=0.284 Sum_probs=37.1
Q ss_pred cccCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHhCC--Cccchhhhhh
Q psy16514 18 RAVFSDLQRKGLEKRFQ-----IQKYISKPDRKKLAEKLGL--KDSQVKIWFQ 63 (155)
Q Consensus 18 R~~~t~~ql~~L~~~F~-----~~~~p~~~~~~~LA~~l~l--~~~~V~~WFq 63 (155)
...++..++..|+.+|. .+.+.+..+...+...+|+ +..+|+.+|+
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45788999999999985 4679999999998888875 5667777774
No 113
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=62.06 E-value=4.4 Score=28.54 Aligned_cols=44 Identities=5% Similarity=0.011 Sum_probs=34.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~r 70 (155)
+.+....|....|-. .....||...|++...|..+|.++-.=..
T Consensus 34 l~aa~~lf~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~ 77 (215)
T 2qko_A 34 VNAAIEVLAREGARG-LTFRAVDVEANVPKGTASNYFPSRDDLFD 77 (215)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHSSSTTTCHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHcCCCcchHHHhCCCHHHHHH
Confidence 555666788877754 45778899999999999999998665443
No 114
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=62.04 E-value=9.3 Score=23.58 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=35.1
Q ss_pred cCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCCccchhhhhh
Q psy16514 20 VFSDLQRKGLEKRFQI-----QKYISKPDRKKLAEKLGLKDSQVKIWFQ 63 (155)
Q Consensus 20 ~~t~~ql~~L~~~F~~-----~~~p~~~~~~~LA~~l~l~~~~V~~WFq 63 (155)
.++..+...+...|.. +.+.+..+...+...+|++...+..+|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5678899999999864 5678888888888888998877777664
No 115
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=61.92 E-value=16 Score=22.80 Aligned_cols=49 Identities=12% Similarity=0.069 Sum_probs=36.4
Q ss_pred CcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q psy16514 17 RRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRN 71 (155)
Q Consensus 17 ~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk 71 (155)
....+|..++.+|.-.+. . ....++|..+|++...|+....+-+.|..-
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~--G----~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEK--G----FTNQEIADALHLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp ---CCCHHHHHHHHHHHT--T----CCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cccCCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 345799999999988763 2 246789999999999999988876665543
No 116
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=61.82 E-value=6.2 Score=24.02 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=27.3
Q ss_pred HHHHHHHhCCCccchhhhhhhhHHHHhhHHHHHHHhcC
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQNRRMKWRNSKERELLANG 81 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~~~~~~~~~ 81 (155)
...||..||++..-|..|..++..-..+....+...++
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~~iP~~~~~~Ie~~T~G 50 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAGEIPPLRQSDIEVRTAY 50 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTSCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 67899999999999999997655554444444444433
No 117
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=61.32 E-value=3.5 Score=29.90 Aligned_cols=44 Identities=11% Similarity=0.123 Sum_probs=34.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~r 70 (155)
+.+....|....|-. .....||...|++...|..+|.|+-.=..
T Consensus 29 l~aA~~lf~~~G~~~-~s~~~IA~~agvs~~tlY~~F~sKe~L~~ 72 (231)
T 2zcx_A 29 LDAARELGTERGIRE-ITLTDIAATVGMHKSALLRYFETREQIFL 72 (231)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTSCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHhCCccc-CCHHHHHHHhCCCHHHHHHhCCCHHHHHH
Confidence 555566688887764 45677899999999999999999766433
No 118
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=61.31 E-value=4.8 Score=28.35 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=33.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
+......|.... .......||...|++...|..+|.|+..=.
T Consensus 26 l~aA~~lf~~~G--~~~s~~~IA~~aGvs~~tlY~~F~sK~~L~ 67 (215)
T 2hku_A 26 FTAATELFLEHG--EGVPITQICAAAGAHPNQVTYYYGSKERLF 67 (215)
T ss_dssp HHHHHHHHHHHC--TTSCHHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 555556687777 667788999999999999999999876643
No 119
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=60.34 E-value=2.4 Score=29.92 Aligned_cols=44 Identities=7% Similarity=0.121 Sum_probs=32.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~r 70 (155)
+.+....|....|-. .....||...|++...|..+|.++-.=..
T Consensus 29 l~aA~~lf~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~L~~ 72 (214)
T 2zb9_A 29 LHAVGELLLTEGTAQ-LTFERVARVSGVSKTTLYKWWPSKGALAL 72 (214)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHCCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHHCCCHHHHHHHCCCHHHHHH
Confidence 444555677776654 35777899999999999999998765443
No 120
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=60.26 E-value=11 Score=20.74 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=27.8
Q ss_pred cCC--HHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhh
Q psy16514 20 VFS--DLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQ 63 (155)
Q Consensus 20 ~~t--~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFq 63 (155)
.++ +.+...+...+... + ...++|..+|++...|..|+.
T Consensus 13 ~l~~~~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAKMG-Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 455 66666665555432 2 466889999999999999985
No 121
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=59.56 E-value=31 Score=23.39 Aligned_cols=41 Identities=7% Similarity=0.074 Sum_probs=30.6
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhh
Q psy16514 19 AVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQN 64 (155)
Q Consensus 19 ~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqN 64 (155)
..++.++...+...+... + ....+|..+|++...|..|++.
T Consensus 24 ~~~s~e~r~~ii~l~~~G-~----s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-V----RPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 467888776666666533 2 3557899999999999999964
No 122
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=59.52 E-value=13 Score=24.40 Aligned_cols=41 Identities=12% Similarity=0.319 Sum_probs=31.1
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhh
Q psy16514 19 AVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQN 64 (155)
Q Consensus 19 ~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqN 64 (155)
..++..+...+...+... + ....+|..+|++...|..|++.
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHc
Confidence 467788877776666533 2 3567899999999999999964
No 123
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=58.45 E-value=6.4 Score=22.21 Aligned_cols=33 Identities=24% Similarity=0.167 Sum_probs=26.2
Q ss_pred HHHHHHHhCCCccchhhhhhhhHHHHhhHHHHH
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQNRRMKWRNSKERE 76 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~~~~ 76 (155)
..++|..+|++...|+.+..+-+.|.+.....+
T Consensus 16 ~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~ 48 (61)
T 2jpc_A 16 NHGISEKLHISIKTVETHRMNMMRKLQVHKVTE 48 (61)
T ss_dssp SHHHHHHTCSCHHHHHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHCCCCHHH
Confidence 457899999999999999988887776644333
No 124
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=58.19 E-value=13 Score=21.94 Aligned_cols=41 Identities=10% Similarity=0.090 Sum_probs=33.0
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhH
Q psy16514 19 AVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRR 66 (155)
Q Consensus 19 ~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR 66 (155)
..++...+..+......+ ...||..+|++...|..|-.+++
T Consensus 9 ~~~~g~~lr~~R~~~glt-------q~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcCCC-------HHHHHHHhCcCHHHHHHHHcCCC
Confidence 468888888887765433 57899999999999999998765
No 125
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=57.26 E-value=20 Score=24.18 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=33.2
Q ss_pred CcccCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHhCCCcc
Q psy16514 17 RRAVFSDLQRKGLEKRFQ-----IQKYISKPDRKKLAEKLGLKDS 56 (155)
Q Consensus 17 ~R~~~t~~ql~~L~~~F~-----~~~~p~~~~~~~LA~~l~l~~~ 56 (155)
+|..+|..|+..|+.+|. .+.+.+..+...+...+|+...
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 356799999999999996 3678999999988888887664
No 126
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=56.39 E-value=16 Score=24.38 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=23.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSKER 75 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~~~ 75 (155)
+.+++-.|+.|+||...- -+.-=.|||.+||..+.+
T Consensus 15 vRiIkiLyQSNPyP~peG--------------TRqaRRNRRRRWR~RQrQ 50 (115)
T 2x7l_M 15 VRLIKFLYQSNPPPNPEG--------------TRQARRNRRRRWRERQRQ 50 (115)
T ss_dssp HHHHHHHHHSSCCCCCCC--------------CTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCC--------------chhhhHhHHHHHHHHHHH
Confidence 344555689999998531 111226899999887643
No 127
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=55.97 E-value=5 Score=28.80 Aligned_cols=48 Identities=10% Similarity=0.001 Sum_probs=34.7
Q ss_pred cCCHHH-HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q psy16514 20 VFSDLQ-RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70 (155)
Q Consensus 20 ~~t~~q-l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~r 70 (155)
..+..+ +..-...|.... ......||..+|++...+...|.||-.=..
T Consensus 10 ~~~r~~Il~aA~~l~~~~G---~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~ 58 (213)
T 2g7g_A 10 RLDRERIAEAALELVDRDG---DFRMPDLARHLNVQVSSIYHHAKGRAAVVE 58 (213)
T ss_dssp -CCHHHHHHHHHHHHHHHS---SCCHHHHHHHTTSCHHHHHTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcC---CCCHHHHHHHhCCCHhHHHHHcCCHHHHHH
Confidence 344443 455566677766 667888999999999999999998665443
No 128
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=55.70 E-value=31 Score=22.09 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=39.3
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHHH
Q psy16514 20 VFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSKE 74 (155)
Q Consensus 20 ~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~~ 74 (155)
.+++.+..++.-.|-...+ ....-.++|..+|++...|+......+.+.|+...
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~ 72 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 72 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888877753211 12356788999999999999999888887776543
No 129
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=55.26 E-value=5.5 Score=23.88 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=21.7
Q ss_pred HHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
...||..+|++...|..|..+++.-
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~~p 38 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGRVP 38 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTCCC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCCCC
Confidence 5789999999999999999887643
No 130
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=55.15 E-value=5.9 Score=29.25 Aligned_cols=52 Identities=10% Similarity=0.079 Sum_probs=37.6
Q ss_pred cccCCHHH-HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q psy16514 18 RAVFSDLQ-RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70 (155)
Q Consensus 18 R~~~t~~q-l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~r 70 (155)
|...+..+ +......|....|-. .....||..+|++...|...|.||-.=..
T Consensus 16 r~~~tr~~Il~AA~~l~~e~G~~~-~S~~~IA~~aGvs~~tlY~hF~sK~~Ll~ 68 (243)
T 2g7l_A 16 KPALSRRWIVDTAVALMRAEGLEK-VTMRRLAQELDTGPASLYVYVANTAELHA 68 (243)
T ss_dssp CCCCCHHHHHHHHHHHHHHHCSSS-CCHHHHHHHTTSCHHHHTTTCCSHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHhcCchh-cCHHHHHHHHCCChhHHHHHcCCHHHHHH
Confidence 44455554 555666788777754 45777899999999999999998655433
No 131
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=54.75 E-value=26 Score=21.41 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=22.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSKE 74 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~~ 74 (155)
+.+++-.|+.|+||+..-... -=.|||.+||..+.
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq--------------aRRNRRRRWR~RQr 52 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ--------------ARRNRRRRWRERQR 52 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH--------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH--------------HHHHHHHHHHHHHH
Confidence 345566689999998542111 12588888887654
No 132
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=54.45 E-value=18 Score=26.90 Aligned_cols=52 Identities=19% Similarity=0.092 Sum_probs=40.2
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHHHHH
Q psy16514 19 AVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSKERE 76 (155)
Q Consensus 19 ~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~~~~ 76 (155)
..+++.+..+|.-.+. . ..-.++|..+|++...|++...+-|.|.+.....+
T Consensus 196 ~~L~~~erevl~L~~~--G----~s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~~~~ 247 (258)
T 3clo_A 196 NILSEREKEILRCIRK--G----LSSKEIAATLYISVNTVNRHRQNILEKLSVGNSIE 247 (258)
T ss_dssp TSSCHHHHHHHHHHHT--T----CCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHH
T ss_pred ccCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHH
Confidence 3588888888877642 2 24678899999999999999999888887754443
No 133
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=53.96 E-value=13 Score=27.13 Aligned_cols=52 Identities=10% Similarity=-0.011 Sum_probs=36.4
Q ss_pred cccCCHHH-HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q psy16514 18 RAVFSDLQ-RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70 (155)
Q Consensus 18 R~~~t~~q-l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~r 70 (155)
+...+..+ +......|....|-. .....||..+|++...|...|.||-.=..
T Consensus 13 ~~~~~r~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~ 65 (237)
T 2hxo_A 13 QEPLSRERIVGAAVELLDTVGERG-LTFRALAERLATGPGAIYWHITGKAELLG 65 (237)
T ss_dssp ---CCHHHHHHHHHHHHHHTTTTT-CCHHHHHHHHTSCGGGGGGTCCCHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCccc-CCHHHHHHHHCCChHHHHHhcCCHHHHHH
Confidence 34455554 555666687777654 45677899999999999999999765443
No 134
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=53.24 E-value=5.7 Score=22.41 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCccchhhhhhhhH
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQNRR 66 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqNrR 66 (155)
...||..+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999998764
No 135
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=52.73 E-value=7.8 Score=26.91 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=33.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRM 67 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~ 67 (155)
+.+-...|....| . .....||...|++...|..+|.|+-.
T Consensus 19 l~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~~ 58 (196)
T 2qwt_A 19 LEVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQA 58 (196)
T ss_dssp HHHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 4555666888898 5 68889999999999999999998765
No 136
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=52.72 E-value=5.5 Score=27.84 Aligned_cols=42 Identities=12% Similarity=0.210 Sum_probs=32.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+.+....|....|-.. ....||...|++...|..+|.|+-.=
T Consensus 23 l~aA~~l~~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK~~L 64 (218)
T 3gzi_A 23 ILAARNLFIERPYAQV-SIREIASLAGTDPGLIRYYFGSKEKL 64 (218)
T ss_dssp HHHHHHHHHTSCCSCC-CHHHHHHHHTSCTHHHHHHHSSHHHH
T ss_pred HHHHHHHHHHCCCCcC-CHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 4555566888777654 56778999999999999999997653
No 137
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=52.29 E-value=16 Score=24.10 Aligned_cols=40 Identities=10% Similarity=0.084 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHH
Q psy16514 21 FSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRM 67 (155)
Q Consensus 21 ~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~ 67 (155)
+++.++..|...... ....||..+|++...|..|-.+++.
T Consensus 71 ~~~~~l~~~R~~~gl-------sq~~la~~~g~s~~~i~~~E~g~~~ 110 (133)
T 3o9x_A 71 VAPEFIVKVRKKLSL-------TQKEASEIFGGGVNAFSRYEKGNAQ 110 (133)
T ss_dssp CCHHHHHHHHHHTTC-------CHHHHHHHHCSCTTHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHcCC-------CHHHHHHHHCCCHHHHHHHHCCCCC
Confidence 445555555544332 2457899999999999999988653
No 138
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=52.23 E-value=26 Score=25.56 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=38.4
Q ss_pred cccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHHH
Q psy16514 18 RAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSKE 74 (155)
Q Consensus 18 R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~~ 74 (155)
...+|+.++.+|.-.+.- ..-.++|..+|+++..|+....+-+.|..-...
T Consensus 173 ~~~Lt~~e~~vl~~~~~g------~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~ 223 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKG------KTASVTANLTGINARTVQHYLDKARAKLDAESV 223 (236)
T ss_dssp GGSCCHHHHHHHHHHHTT------CCHHHHHHHHCCCHHHHHHHHHHHHHHHTCSSH
T ss_pred cCCCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCH
Confidence 356889998888765422 245788999999999999999888777654433
No 139
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=51.71 E-value=6.2 Score=27.30 Aligned_cols=43 Identities=12% Similarity=0.184 Sum_probs=33.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
+.+....|....|-. .....||...|++...|..+|.|+-.=.
T Consensus 18 l~aA~~lf~e~G~~~-~t~~~IA~~agvsk~tlY~~F~sKe~L~ 60 (192)
T 2fq4_A 18 LSASYELLLESGFKA-VTVDKIAERAKVSKATIYKWWPNKAAVV 60 (192)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCccc-ccHHHHHHHcCCCHHHHHHHCCCHHHHH
Confidence 555556688877765 4577889999999999999999866544
No 140
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=51.42 E-value=6.4 Score=22.33 Aligned_cols=24 Identities=13% Similarity=0.397 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCccchhhhhhhhHH
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQNRRM 67 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqNrR~ 67 (155)
...||..+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 567999999999999999987653
No 141
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=51.04 E-value=4.2 Score=28.19 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=20.8
Q ss_pred HHHHHhCCCccchhhhhhhhHHHHhh
Q psy16514 46 KLAEKLGLKDSQVKIWFQNRRMKWRN 71 (155)
Q Consensus 46 ~LA~~l~l~~~~V~~WFqNrR~k~rk 71 (155)
++|..+|++...|+.+...-|.+.|+
T Consensus 156 eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 156 ELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp CSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 46777789999999999887777665
No 142
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=50.68 E-value=8.9 Score=26.36 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 25 QRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 25 ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
-+......|....|-. .....||...|++...+..+|.||-.=.
T Consensus 21 Il~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll 64 (211)
T 3him_A 21 IRAAAIEVFAAKGYGA-TTTREIAASLDMSPGAVYPHYKTKESLL 64 (211)
T ss_dssp HHHHHHHHHHHHCSTT-CCHHHHHHHTTCCTTSSTTTCSSHHHHH
T ss_pred HHHHHHHHHHHcCCCc-CCHHHHHHHhCCCcChhhhcCCCHHHHH
Confidence 3556666688877764 4577889999999999999999876543
No 143
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=50.63 E-value=4.7 Score=28.00 Aligned_cols=42 Identities=12% Similarity=0.222 Sum_probs=32.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+.+....|....|-. .....||...|++...|...|.|+-.=
T Consensus 24 l~aa~~l~~~~G~~~-~s~~~Ia~~agvs~~t~Y~~F~sK~~L 65 (212)
T 1pb6_A 24 LSAALDTFSQFGFHG-TRLEQIAELAGVSKTNLLYYFPSKEAL 65 (212)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHTTSCHHHHHHHSSSHHHH
T ss_pred HHHHHHHHHHcCcch-hhHHHHHHHHCCChhHHHHhCCCHHHH
Confidence 455555677777644 457788999999999999999997654
No 144
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=50.48 E-value=10 Score=25.94 Aligned_cols=41 Identities=15% Similarity=0.037 Sum_probs=32.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRM 67 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~ 67 (155)
+......|....|-. .....||...|++...|..+|.++-.
T Consensus 23 l~aa~~l~~~~G~~~-~s~~~Ia~~agvs~~t~Y~~F~sK~~ 63 (206)
T 3kz9_A 23 MEIALEVFARRGIGR-GGHADIAEIAQVSVATVFNYFPTRED 63 (206)
T ss_dssp HHHHHHHHHHSCCSS-CCHHHHHHHHTSCHHHHHHHCCSHHH
T ss_pred HHHHHHHHHhcCccc-ccHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 555556688877665 34677899999999999999999765
No 145
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=50.34 E-value=14 Score=22.88 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=34.6
Q ss_pred cCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHhCCCccchhhhhh
Q psy16514 20 VFSDLQRKGLEKRFQ-----IQKYISKPDRKKLAEKLGLKDSQVKIWFQ 63 (155)
Q Consensus 20 ~~t~~ql~~L~~~F~-----~~~~p~~~~~~~LA~~l~l~~~~V~~WFq 63 (155)
.++..+...|...|. .+.+.+..+...+...+|++...+..+|.
T Consensus 3 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 3 VVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 467788888998885 35688888888888888988888877774
No 146
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=49.47 E-value=5.2 Score=27.59 Aligned_cols=42 Identities=7% Similarity=0.039 Sum_probs=32.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+.+....|....|-. .....||...|++...+..+|.++-.=
T Consensus 18 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L 59 (202)
T 3lwj_A 18 LTCSLDLFIEKGYYN-TSIRDIIALSEVGTGTFYNYFVDKEDI 59 (202)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHCSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCchhHHHHcCCHHHH
Confidence 555566688877644 457788999999999999999987653
No 147
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=49.04 E-value=7 Score=22.40 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.0
Q ss_pred HHHHHHHhCCCccchhhhhhhhHH
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQNRRM 67 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqNrR~ 67 (155)
...||..+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 567999999999999999987664
No 148
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=48.70 E-value=11 Score=26.01 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=33.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+.+....|....|-. .....||...|++...+..+|.++-.=
T Consensus 20 l~aA~~lf~~~G~~~-~s~~~Ia~~agvs~~t~Y~yF~sKe~L 61 (203)
T 3ccy_A 20 IERAAAMFARQGYSE-TSIGDIARACECSKSRLYHYFDSKEAV 61 (203)
T ss_dssp HHHHHHHHHHTCTTT-SCHHHHHHHTTCCGGGGTTTCSCHHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCcCeeeeeeCCHHHH
Confidence 555666788887765 457778999999999999999987653
No 149
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=48.70 E-value=7.5 Score=22.66 Aligned_cols=24 Identities=25% Similarity=0.580 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCccchhhhhhhhHH
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQNRRM 67 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqNrR~ 67 (155)
...||..+|++...|..|..+++.
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~~ 49 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKSQ 49 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 568999999999999999987653
No 150
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=48.66 E-value=30 Score=21.92 Aligned_cols=40 Identities=8% Similarity=0.023 Sum_probs=29.4
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhh
Q psy16514 20 VFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQN 64 (155)
Q Consensus 20 ~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqN 64 (155)
.++.++...+...+. ..+ ....+|..+|++...|..|++.
T Consensus 17 ~~s~~~r~~i~~~~~-~g~----s~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAA-DGI----RPCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp CCCHHHHHHHHHHHH-TTC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 577777666666664 332 3467899999999999999963
No 151
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=48.53 E-value=6.7 Score=26.74 Aligned_cols=41 Identities=12% Similarity=0.095 Sum_probs=31.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
+......|... .......||...|++...|..+|.|+-.=.
T Consensus 20 l~aA~~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~ 60 (190)
T 2v57_A 20 LDAAMLVLADH---PTAALGDIAAAAGVGRSTVHRYYPERTDLL 60 (190)
T ss_dssp HHHHHHHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 44445557665 667788999999999999999999976543
No 152
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=46.72 E-value=15 Score=26.95 Aligned_cols=51 Identities=22% Similarity=0.175 Sum_probs=36.0
Q ss_pred cccCCHHH-HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 18 RAVFSDLQ-RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 18 R~~~t~~q-l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
|...+..+ +..-...|....|-. .....||..+|++...|..+|.||-.=.
T Consensus 26 ~~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~Ll 77 (241)
T 2hxi_A 26 RRRWSTEQILDAAAELLLAGDAET-FSVRKLAASLGTDSSSLYRHFRNKTELL 77 (241)
T ss_dssp --CCCHHHHHHHHHHHHSSSSCCC-CCHHHHHHHTTSCHHHHHHHTSSHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCcCHHHHHHHcCCHHHHH
Confidence 44555554 455566677776655 4567789999999999999999976543
No 153
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=46.31 E-value=10 Score=25.81 Aligned_cols=41 Identities=5% Similarity=0.161 Sum_probs=32.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRM 67 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~ 67 (155)
+.+....|....|-. .....||...|++...|...|.|+-.
T Consensus 16 l~aa~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~~ 56 (197)
T 3rd3_A 16 LDTGYRIMAVKGFSG-VGLNEILQSAGVPKGSFYHYFKSKEQ 56 (197)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHTTTCSCHHH
T ss_pred HHHHHHHHHHCCccc-CCHHHHHHHhCCChhhHHHHcCCHHH
Confidence 566666788877655 34677899999999999999998776
No 154
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=46.00 E-value=8.6 Score=22.35 Aligned_cols=25 Identities=12% Similarity=0.377 Sum_probs=21.2
Q ss_pred HHHHHHHHhCCCccchhhhhhhhHH
Q psy16514 43 DRKKLAEKLGLKDSQVKIWFQNRRM 67 (155)
Q Consensus 43 ~~~~LA~~l~l~~~~V~~WFqNrR~ 67 (155)
....||..+|++...|..|..+++.
T Consensus 20 s~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 20 RQAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 3567999999999999999987654
No 155
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=45.61 E-value=8.5 Score=22.45 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCccchhhhhhhhH
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQNRR 66 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqNrR 66 (155)
...||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999998763
No 156
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=45.12 E-value=9 Score=22.35 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=20.6
Q ss_pred HHHHHHHHhCCCccchhhhhhhhH
Q psy16514 43 DRKKLAEKLGLKDSQVKIWFQNRR 66 (155)
Q Consensus 43 ~~~~LA~~l~l~~~~V~~WFqNrR 66 (155)
....||..+|++...|..|..+++
T Consensus 25 sq~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 25 SQEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCS
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCC
Confidence 356799999999999999998764
No 157
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=45.08 E-value=16 Score=27.30 Aligned_cols=51 Identities=12% Similarity=0.075 Sum_probs=37.7
Q ss_pred cCCHHH-HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q psy16514 20 VFSDLQ-RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRN 71 (155)
Q Consensus 20 ~~t~~q-l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk 71 (155)
..+.++ +..-...|....|-. .....||..+|++...+...|.||-.=..-
T Consensus 26 ~~tr~~Il~AA~~L~~e~G~~~-~Smr~IA~~aGVs~~tlY~hF~~K~~Ll~a 77 (267)
T 2y2z_A 26 TLSRDQIVRAAVKVADTEGVEA-ASMRRVAAELGAGTMSLYYYVPTKEDLVEL 77 (267)
T ss_dssp EECHHHHHHHHHHHHHHHCTTT-CCHHHHHHHHTCCHHHHHTTCCSHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 556655 555666788777755 456778999999999999999987655443
No 158
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=44.76 E-value=9.2 Score=21.72 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCccchhhhhhhhHH
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQNRRM 67 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqNrR~ 67 (155)
...||..+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999987654
No 159
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=44.50 E-value=36 Score=24.66 Aligned_cols=50 Identities=12% Similarity=0.091 Sum_probs=37.4
Q ss_pred cccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHH
Q psy16514 18 RAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSK 73 (155)
Q Consensus 18 R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~ 73 (155)
...+|+.++.+|.-.+. . ..-.++|..+|+++..|+...++-+.|..-..
T Consensus 171 ~~~Lt~~e~~vl~~~~~-g-----~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~ 220 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAV-G-----KTMEEIADVEGVKYNSVRVKLREAMKRFDVRS 220 (234)
T ss_dssp CCCCCHHHHHHHHHHTT-T-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCCHHHHHHHHHHHc-C-----CCHHHHHHHHCcCHHHHHHHHHHHHHHhCCCC
Confidence 34688888888866432 1 24678899999999999999988777765433
No 160
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=44.11 E-value=8.1 Score=26.69 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=33.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
+.+....|....|-.. ....||...|++...|...|.++..=.
T Consensus 22 l~aa~~lf~~~G~~~~-t~~~Ia~~agvs~~t~Y~~F~sK~~L~ 64 (213)
T 2qtq_A 22 LQTASNIMREGDVVDI-SLSELSLRSGLNSALVKYYFGNKAGLL 64 (213)
T ss_dssp HHHHHHHHHHHTSSCC-CHHHHHHHHCCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHcCcccc-cHHHHHHHhCCChhhHhHhcCCHHHHH
Confidence 5666667888776553 467789999999999999999976543
No 161
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=44.02 E-value=5.9 Score=29.06 Aligned_cols=44 Identities=20% Similarity=0.192 Sum_probs=33.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~r 70 (155)
+.+....|....|-. .....||...|++...|..+|.++-.=..
T Consensus 54 l~AA~~lf~e~G~~~-~Ti~~IA~~AGvs~~t~Y~yF~sKe~Ll~ 97 (260)
T 2of7_A 54 RAATYGLIRQQGYEA-TTVEQIAERAEVSPSTVLRYFPTREDIVL 97 (260)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTSCHHHHHHHCSSHHHHHT
T ss_pred HHHHHHHHHHhCccc-ccHHHHHHHhCCChHHHHHHcCCHHHHHH
Confidence 455556688877665 35677899999999999999998765433
No 162
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=43.81 E-value=12 Score=26.68 Aligned_cols=43 Identities=12% Similarity=0.160 Sum_probs=32.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
+.+....|....|-. .....||...|++...|...|.|+-.=.
T Consensus 50 l~aA~~lf~e~G~~~-~t~~~IA~~aGvs~~tlY~~F~sK~~L~ 92 (236)
T 3q0w_A 50 LATAENLLEDRPLAD-ISVDDLAKGAGISRPTFYFYFPSKEAVL 92 (236)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCcHHHHHHHCCCHHHHH
Confidence 445555577776644 4567789999999999999999876543
No 163
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=43.15 E-value=10 Score=27.55 Aligned_cols=43 Identities=12% Similarity=0.160 Sum_probs=32.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
+.+....|....|-. .....||...|++...|..+|.+|-.=.
T Consensus 49 l~AA~~lf~~~G~~~-~t~~~IA~~aGvs~~tlY~~F~sK~~L~ 91 (255)
T 3g1o_A 49 LATAENLLEDRPLAD-ISVDDLAKGAGISRPTFYFYFPSKEAVL 91 (255)
T ss_dssp HHHHHHHHTTSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCCcc-CcHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 445555677766544 4567789999999999999999876543
No 164
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=42.25 E-value=10 Score=23.41 Aligned_cols=25 Identities=12% Similarity=0.441 Sum_probs=21.3
Q ss_pred HHHHHHHHhCCCccchhhhhhhhHH
Q psy16514 43 DRKKLAEKLGLKDSQVKIWFQNRRM 67 (155)
Q Consensus 43 ~~~~LA~~l~l~~~~V~~WFqNrR~ 67 (155)
....||..+|++...|..|..+++.
T Consensus 24 sq~~lA~~~gis~~~is~~e~G~~~ 48 (94)
T 2kpj_A 24 TQLEIAKSIGVSPQTFNTWCKGIAI 48 (94)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSCC
T ss_pred CHHHHHHHHCcCHHHHHHHHhCCCC
Confidence 3577999999999999999987653
No 165
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=42.11 E-value=11 Score=22.08 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCccchhhhhhhhH
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQNRR 66 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqNrR 66 (155)
...||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999998876
No 166
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=41.52 E-value=11 Score=21.67 Aligned_cols=24 Identities=29% Similarity=0.173 Sum_probs=20.5
Q ss_pred HHHHHHHHhCCCccchhhhhhhhH
Q psy16514 43 DRKKLAEKLGLKDSQVKIWFQNRR 66 (155)
Q Consensus 43 ~~~~LA~~l~l~~~~V~~WFqNrR 66 (155)
....||..+|++...|..|..+++
T Consensus 28 s~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 28 SQETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCS
T ss_pred CHHHHHHHHCcCHHHHHHHHCCCC
Confidence 356799999999999999998764
No 167
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=41.40 E-value=12 Score=22.51 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.2
Q ss_pred HHHHHHHHhCCCccchhhhhhhhH
Q psy16514 43 DRKKLAEKLGLKDSQVKIWFQNRR 66 (155)
Q Consensus 43 ~~~~LA~~l~l~~~~V~~WFqNrR 66 (155)
....||..+|++...|..|..+++
T Consensus 33 sq~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 33 TQFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTCG
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 357899999999999999998876
No 168
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=41.30 E-value=42 Score=22.30 Aligned_cols=41 Identities=10% Similarity=0.095 Sum_probs=30.4
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhh
Q psy16514 19 AVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQN 64 (155)
Q Consensus 19 ~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqN 64 (155)
..++.++...+...+.. .+ ....+|..+|++...|..|++.
T Consensus 31 ~~~s~e~r~~iv~~~~~-G~----s~~~iA~~lgis~~TV~rw~~~ 71 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQ-GV----RPCDISRQLRVSHGCVSKILGR 71 (149)
T ss_dssp SCCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 45788877666666643 22 3567899999999999999963
No 169
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=41.14 E-value=14 Score=22.08 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCccchhhhhhhhHH
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQNRRM 67 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqNrR~ 67 (155)
...||..+|++...|..|..+++.
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~~ 51 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPDN 51 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 567999999999999999987543
No 170
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=41.05 E-value=8.4 Score=27.55 Aligned_cols=44 Identities=11% Similarity=0.077 Sum_probs=33.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~r 70 (155)
+......|....|- ......||...|++...|..+|.++-.=..
T Consensus 19 l~AA~~l~~~~G~~-~~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~ 62 (231)
T 2qib_A 19 IGVALDLFSRRSPD-EVSIDEIASAAGISRPLVYHYFPGKLSLYE 62 (231)
T ss_dssp HHHHHHHHHHSCGG-GCCHHHHHHHHTSCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHcCch-hcCHHHHHHHhCCCHHHHHHHCCCHHHHHH
Confidence 55556668877763 345778899999999999999998765443
No 171
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=40.09 E-value=48 Score=19.33 Aligned_cols=44 Identities=14% Similarity=0.124 Sum_probs=32.5
Q ss_pred ccCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHhCCCc--cc---hhhhh
Q psy16514 19 AVFSDLQRKGLEKRFQ-----IQKYISKPDRKKLAEKLGLKD--SQ---VKIWF 62 (155)
Q Consensus 19 ~~~t~~ql~~L~~~F~-----~~~~p~~~~~~~LA~~l~l~~--~~---V~~WF 62 (155)
..++..++..|...|. .+.+.+..+...+...+|... .. |..+|
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 59 (86)
T 1j7q_A 6 RALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEA 59 (86)
T ss_dssp CCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4578888999999985 356889988888888888543 34 55555
No 172
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=39.51 E-value=66 Score=24.00 Aligned_cols=52 Identities=13% Similarity=0.048 Sum_probs=39.8
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhHHHHH
Q psy16514 19 AVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSKERE 76 (155)
Q Consensus 19 ~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~~~~~ 76 (155)
..+|+.++.+|.-...- ..-.++|..+|++++.|+....|-+.|..-....+
T Consensus 196 ~~Lt~re~~vl~~~~~G------~s~~eIA~~l~is~~TV~~~~~~~~~kl~~~~~~~ 247 (265)
T 3qp6_A 196 MPLSQREYDIFHWMSRG------KTNWEIATILNISERTVKFHVANVIRKLNANNRTH 247 (265)
T ss_dssp CCCCHHHHHHHHHHHTT------CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHH
T ss_pred CCCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCHHH
Confidence 56888888888777432 24678999999999999999998887766544433
No 173
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=39.34 E-value=14 Score=26.35 Aligned_cols=42 Identities=7% Similarity=0.004 Sum_probs=27.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+..-...|....|-. .....||...|++...|..+|.+|..=
T Consensus 41 l~AA~~lf~~~G~~~-~s~~~IA~~AGvs~~tlY~~F~sKe~L 82 (237)
T 3kkd_A 41 LDAAMRLIVRDGVRA-VRHRAVAAEAQVPLSATTYYFKDIDDL 82 (237)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTSCTTTC-----CHHHH
T ss_pred HHHHHHHHHhcChhh-cCHHHHHHHhCCChhHHHHHcCCHHHH
Confidence 444555688777743 457778999999999999999987653
No 174
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=39.21 E-value=15 Score=24.96 Aligned_cols=44 Identities=7% Similarity=-0.036 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q psy16514 25 QRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70 (155)
Q Consensus 25 ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~r 70 (155)
=+..-...|....|- .....+|...|++...|...|.||-.=..
T Consensus 14 Il~aA~~lf~~~G~~--~t~~~IA~~aGvs~~tly~~F~sK~~L~~ 57 (190)
T 3jsj_A 14 LLEAAAALTYRDGVG--IGVEALCKAAGVSKRSMYQLFESKDELLA 57 (190)
T ss_dssp HHHHHHHHHHHHCTT--CCHHHHHHHHTCCHHHHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 356666678888887 67888999999999999999998776443
No 175
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=38.92 E-value=15 Score=25.07 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=34.0
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q psy16514 20 VFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRN 71 (155)
Q Consensus 20 ~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk 71 (155)
.+++.+..+|.-.| .......++|..+|++...|+.+...-|.+.|+
T Consensus 93 ~Lp~~~r~vl~L~~-----~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~ 139 (157)
T 2lfw_A 93 RMTPLSRQALLLTA-----MEGFSPEDAAYLIEVDTSEVETLVTEALAEIEK 139 (157)
T ss_dssp TSCTTHHHHHTTTS-----SSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHH-----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 35666666664433 223356789999999999999999877777665
No 176
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=38.71 E-value=13 Score=22.79 Aligned_cols=23 Identities=9% Similarity=0.199 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCccchhhhhhhhH
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQNRR 66 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqNrR 66 (155)
...||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 57899999999999999998764
No 177
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=38.47 E-value=25 Score=24.27 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=32.0
Q ss_pred cccCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHhCCCcc
Q psy16514 18 RAVFSDLQRKGLEKRFQ-----IQKYISKPDRKKLAEKLGLKDS 56 (155)
Q Consensus 18 R~~~t~~ql~~L~~~F~-----~~~~p~~~~~~~LA~~l~l~~~ 56 (155)
++.+|.+|+..|+.+|. .+.+.+..+...+...+|+...
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 45 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPS 45 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChh
Confidence 46789999999999995 3568888888888888887654
No 178
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=38.26 E-value=18 Score=24.89 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=32.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRM 67 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~ 67 (155)
+.+....|....|-. .....||...|++...|...|.++-.
T Consensus 23 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~ 63 (207)
T 2rae_A 23 STVGIELFTEQGFDA-TSVDEVAEASGIARRTLFRYFPSKNA 63 (207)
T ss_dssp HHHHHHHHHHHCTTT-SCHHHHHHHTTSCHHHHHHHCSSTTT
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCcchHhhhCCCHHH
Confidence 555666688877754 45678899999999999999998764
No 179
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=37.71 E-value=72 Score=21.43 Aligned_cols=46 Identities=4% Similarity=-0.169 Sum_probs=29.5
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHh-------CCCccchhhhhhh
Q psy16514 19 AVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKL-------GLKDSQVKIWFQN 64 (155)
Q Consensus 19 ~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l-------~l~~~~V~~WFqN 64 (155)
..++..+...|...+..++..+..+........ .++...|..|+..
T Consensus 82 ~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~ 134 (159)
T 2k27_A 82 KVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRT 134 (159)
T ss_dssp CCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHH
Confidence 456777888888888777666655444322222 3677888888853
No 180
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=37.53 E-value=7 Score=28.04 Aligned_cols=44 Identities=14% Similarity=0.195 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 21 FSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 21 ~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
+++.+..+|.-.| .......++|..+|++...|+.++..-+.+.
T Consensus 199 L~~~~r~vl~l~~-----~~g~s~~EIA~~lgis~~tV~~~~~ra~~~L 242 (243)
T 1l0o_C 199 LDERERLIVYLRY-----YKDQTQSEVASRLGISQVQMSRLEKKILQHI 242 (243)
T ss_dssp -------------------------------------------------
T ss_pred CCHHHHHHHHHHH-----hcCCCHHHHHHHHCcCHHHHHHHHHHHHHHc
Confidence 3444444444433 2334667899999999999999987665543
No 181
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=36.71 E-value=13 Score=25.93 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=34.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~r 70 (155)
+.+....|....|- .....||...|++...|..+|.|+-.=..
T Consensus 18 l~aA~~lf~~~G~~--~s~~~IA~~agvs~~tiY~~F~sK~~L~~ 60 (224)
T 1t33_A 18 IAAALAQFGEYGLH--ATTRDIAALAGQNIAAITYYFGSKEDLYL 60 (224)
T ss_dssp HHHHHHHHHHHGGG--SCHHHHHHHHTSCHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHhcCCHHHHHH
Confidence 55555668888877 67888999999999999999999766443
No 182
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=36.70 E-value=15 Score=21.76 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCccchhhhhhhhH
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQNRR 66 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqNrR 66 (155)
...||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56799999999999999998765
No 183
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=36.61 E-value=62 Score=20.95 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=33.9
Q ss_pred cccCCHHHHHHHHHHHhh------cCCCCHHHHHHHHHHhCC--Cccchhhhhh
Q psy16514 18 RAVFSDLQRKGLEKRFQI------QKYISKPDRKKLAEKLGL--KDSQVKIWFQ 63 (155)
Q Consensus 18 R~~~t~~ql~~L~~~F~~------~~~p~~~~~~~LA~~l~l--~~~~V~~WFq 63 (155)
...++..++..|...|.. +.+.+..+...+...+|+ +...+..+|.
T Consensus 9 ~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 62 (161)
T 1dtl_A 9 VEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMID 62 (161)
T ss_dssp GGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 457899999999999853 567888888888877774 4445666653
No 184
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=36.59 E-value=8.7 Score=26.19 Aligned_cols=23 Identities=22% Similarity=0.641 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCccchhhhhhhhH
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQNRR 66 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqNrR 66 (155)
...+|..+|+...+++.|+...|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 46689999999999999997554
No 185
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=36.23 E-value=13 Score=21.36 Aligned_cols=20 Identities=30% Similarity=0.674 Sum_probs=18.0
Q ss_pred HHHHHHHHhCCCccchhhhh
Q psy16514 43 DRKKLAEKLGLKDSQVKIWF 62 (155)
Q Consensus 43 ~~~~LA~~l~l~~~~V~~WF 62 (155)
....||..+|++...|..|.
T Consensus 12 tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 12 TQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SHHHHHHHHTCCHHHHHHCC
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 35789999999999999998
No 186
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=36.04 E-value=15 Score=25.06 Aligned_cols=43 Identities=7% Similarity=0.179 Sum_probs=33.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
+.+....|....|-. .....||...|++...|...|.|+-.=.
T Consensus 20 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L~ 62 (203)
T 3f1b_A 20 LDAAVDVFSDRGFHE-TSMDAIAAKAEISKPMLYLYYGSKDELF 62 (203)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHTTSCHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHcCccc-ccHHHHHHHhCCchHHHHHHhCCHHHHH
Confidence 455555677777654 4577789999999999999999876643
No 187
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=35.73 E-value=17 Score=26.34 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=20.0
Q ss_pred HHHHHHHHhCCCccchhhhhhhhH
Q psy16514 43 DRKKLAEKLGLKDSQVKIWFQNRR 66 (155)
Q Consensus 43 ~~~~LA~~l~l~~~~V~~WFqNrR 66 (155)
....||..+|++...|..|..+++
T Consensus 32 t~~~lA~~~gis~~~i~~~~~g~~ 55 (236)
T 3bdn_A 32 SQESVADKMGMGQSGVGALFNGIN 55 (236)
T ss_dssp CSHHHHHHHTSCHHHHHHHTTTTS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 456789999999999999998754
No 188
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=35.64 E-value=14 Score=21.69 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCccchhhhhhhhH
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQNRR 66 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqNrR 66 (155)
...||..+|++...|..|..+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56799999999999999998765
No 189
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=35.61 E-value=9.3 Score=26.69 Aligned_cols=41 Identities=15% Similarity=0.273 Sum_probs=8.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRM 67 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~ 67 (155)
+......|....|-. .....||...|++...|..+|.++-.
T Consensus 36 l~aa~~l~~~~G~~~-~ti~~IA~~agvs~~t~Y~~F~sK~~ 76 (212)
T 2np3_A 36 LTAARVCFAERGFDA-TSLRRIAETAGVDQSLVHHFYGTKEN 76 (212)
T ss_dssp HHHHHHHC----------------------------CCC-CH
T ss_pred HHHHHHHHHHcCccc-ccHHHHHHHcCCCHHHHHHHhCCHHH
Confidence 555566677766655 45677899999999999999988765
No 190
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=35.56 E-value=36 Score=24.14 Aligned_cols=47 Identities=19% Similarity=0.143 Sum_probs=36.1
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q psy16514 19 AVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRN 71 (155)
Q Consensus 19 ~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk 71 (155)
..+|+.+..+|.-.... ....+||..++++.+.|++...+-+.|..-
T Consensus 148 ~~LT~rE~~vL~~l~~g------~s~~eIa~~l~is~~TV~~hi~~l~~KL~~ 194 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSEG------LTNKQIADRMFLAEKTVKNYVSRLLAKLGM 194 (225)
T ss_dssp TTSCHHHHHHHHHHHTT------CCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHCC------CCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 45888888888766543 246789999999999999999888776543
No 191
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=34.61 E-value=15 Score=26.09 Aligned_cols=42 Identities=10% Similarity=0.185 Sum_probs=32.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+......|....|-. .....||...|++...|...|.|+-.=
T Consensus 22 l~aA~~l~~~~G~~~-~s~~~IA~~agvs~~t~Y~~F~~K~~L 63 (216)
T 2oi8_A 22 KDHAWEQIATAGASA-LSLNAIAKRMGMSGPALYRYFDGRDEL 63 (216)
T ss_dssp HHHHHHHHHHHCTTS-CCHHHHHHHTTCCHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHhcCccc-CCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 455556687777654 456778999999999999999987653
No 192
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=34.22 E-value=33 Score=23.72 Aligned_cols=44 Identities=18% Similarity=0.223 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 25 QRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 25 ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
=+.+-...|....|-. .....||...|++...|...|.||-.=.
T Consensus 16 Il~aA~~lF~~~Gy~~-ts~~~IA~~aGvsk~tlY~~F~sKe~L~ 59 (202)
T 2i10_A 16 ALQTAMELFWRQGYEG-TSITDLTKALGINPPSLYAAFGSKRDLF 59 (202)
T ss_dssp HHHHHHHHHHHHTTTT-CCHHHHHHHHTCCHHHHHHHHCSHHHHH
T ss_pred HHHHHHHHHHHhCccc-CCHHHHHHHhCCChHHHHHHhCCHHHHH
Confidence 3555666788888765 3477789999999999999999876543
No 193
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=34.14 E-value=17 Score=21.58 Aligned_cols=23 Identities=35% Similarity=0.332 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCccchhhhhhhhH
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQNRR 66 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqNrR 66 (155)
...||..+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 56799999999999999998764
No 194
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=33.33 E-value=17 Score=22.64 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=21.7
Q ss_pred HHHHHHHHhCCCccchhhhhhhhHH
Q psy16514 43 DRKKLAEKLGLKDSQVKIWFQNRRM 67 (155)
Q Consensus 43 ~~~~LA~~l~l~~~~V~~WFqNrR~ 67 (155)
...+||..+|++...|..|..+++.
T Consensus 39 Tq~eLA~~~GiS~~tis~iE~G~~~ 63 (88)
T 3t76_A 39 KKGELREAVGVSKSTFAKLGKNENV 63 (88)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCc
Confidence 3678999999999999999998653
No 195
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=33.25 E-value=42 Score=22.70 Aligned_cols=37 Identities=11% Similarity=0.219 Sum_probs=29.1
Q ss_pred cCCHHHHHHHHHHHhh-------cCCCCHHHHHHHHHHhCCCcc
Q psy16514 20 VFSDLQRKGLEKRFQI-------QKYISKPDRKKLAEKLGLKDS 56 (155)
Q Consensus 20 ~~t~~ql~~L~~~F~~-------~~~p~~~~~~~LA~~l~l~~~ 56 (155)
.+|.+|+..|+.+|.. +.+.+..+...+.+.+|+.+.
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~t 45 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPT 45 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCCC
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCCC
Confidence 4789999999999852 358888888888888887654
No 196
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=33.24 E-value=18 Score=21.98 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCccchhhhhhhhH
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQNRR 66 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqNrR 66 (155)
...||..+|++...|..|..+++
T Consensus 33 q~~lA~~~gis~~~is~~e~g~~ 55 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGIN 55 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999998754
No 197
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=32.93 E-value=20 Score=20.93 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=17.9
Q ss_pred HHHHHHHhCCCccchhhhhhh
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQN 64 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqN 64 (155)
..++|..||++...|..|-.+
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 467899999999999999864
No 198
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=32.84 E-value=39 Score=23.63 Aligned_cols=42 Identities=7% Similarity=0.039 Sum_probs=32.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+.+-...|....|-. .....||...|++...|..+|.|+-.=
T Consensus 41 l~aA~~lf~~~G~~~-~t~~~IA~~AGvs~~tlY~~F~sKe~L 82 (221)
T 3g7r_A 41 LGTATRIFYAEGIHS-VGIDRITAEAQVTRATLYRHFSGKDDL 82 (221)
T ss_dssp HHHHHHHHHHHCSTT-SCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCCHHHHHHHCCCHHHH
Confidence 444555577777665 346778999999999999999987653
No 199
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=32.73 E-value=71 Score=20.32 Aligned_cols=45 Identities=9% Similarity=0.045 Sum_probs=35.0
Q ss_pred ccCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHhCCCccchhhhhh
Q psy16514 19 AVFSDLQRKGLEKRFQI----QKYISKPDRKKLAEKLGLKDSQVKIWFQ 63 (155)
Q Consensus 19 ~~~t~~ql~~L~~~F~~----~~~p~~~~~~~LA~~l~l~~~~V~~WFq 63 (155)
..++..+...+...|.. +.+.+..+...+...+|++...+...|.
T Consensus 7 w~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~~~el~~i~~ 55 (106)
T 1eh2_A 7 WAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVWE 55 (106)
T ss_dssp CSSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56788899999999864 5678888888877788888877776653
No 200
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=32.60 E-value=23 Score=23.64 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=33.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
+.+....|....|-. .....||...|++...+...|.|+-.=.
T Consensus 14 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L~ 56 (188)
T 3qkx_A 14 FSATDRLMAREGLNQ-LSMLKLAKEANVAAGTIYLYFKNKDELL 56 (188)
T ss_dssp HHHHHHHHHHSCSTT-CCHHHHHHHHTCCHHHHHHHSSSHHHHH
T ss_pred HHHHHHHHHhcCccc-CCHHHHHHHhCCCcchHHHHcCCHHHHH
Confidence 556666688877654 4577889999999999999999876533
No 201
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=32.18 E-value=15 Score=26.00 Aligned_cols=42 Identities=17% Similarity=0.285 Sum_probs=32.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+.+....|....|-. .....||...|++...|...|.||-.=
T Consensus 45 l~AA~~lf~e~G~~~-~tv~~IA~~AGvs~~tlY~~F~sKe~L 86 (214)
T 2guh_A 45 VDAAGRAFATRPYRE-ITLKDIAEDAGVSAPLIIKYFGSKEQL 86 (214)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTSCHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHHcChhh-cCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 455556688777654 456778999999999999999987654
No 202
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=32.08 E-value=33 Score=23.25 Aligned_cols=42 Identities=17% Similarity=0.126 Sum_probs=30.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+......|....|- ......||...|++...|...|.+|-.=
T Consensus 14 l~AA~~l~~~~G~~-~~t~~~IA~~agvs~~t~Y~~F~sK~~L 55 (195)
T 3frq_A 14 LEAATVVLKRCGPI-EFTLSGVAKEVGLSRAALIQRFTNRDTL 55 (195)
T ss_dssp HHHHHHHHHHHHHH-HCCHHHHHHHHTCCHHHHHHHHCSHHHH
T ss_pred HHHHHHHHHhhCcc-cCCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 44445556655442 2357788999999999999999987653
No 203
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=31.97 E-value=72 Score=23.18 Aligned_cols=48 Identities=15% Similarity=0.058 Sum_probs=34.6
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 19 AVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 19 ~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
..+|+.++.+|.-...- ..-.++|..+|++++.|+.-..+-+.|..-.
T Consensus 174 ~~Lt~re~~vl~~~~~G------~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~ 221 (237)
T 3szt_A 174 VRLTARETEMLKWTAVG------KTYGEIGLILSIDQRTVKFHIVNAMRKLNSS 221 (237)
T ss_dssp CCCCHHHHHHHHHHHTT------CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred CCCCHHHHHHHHHHHcC------CCHHHHHHHHCCCHHHHHHHHHHHHHHhCCC
Confidence 45777777777665321 2456889999999999999988877665443
No 204
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=31.91 E-value=14 Score=25.17 Aligned_cols=43 Identities=7% Similarity=0.012 Sum_probs=31.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
+.+....|....|-. .....||...|++...|...|.++-.=.
T Consensus 23 l~aa~~lf~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L~ 65 (208)
T 3cwr_A 23 VGAAQRLLSSGGAAA-MTMEGVASEAGIAKKTLYRFASGRADLI 65 (208)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCHHh-ccHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 444555577766544 3467789999999999999999865543
No 205
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=31.25 E-value=65 Score=18.94 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=33.4
Q ss_pred ccCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHhCCC--ccchhhhhh
Q psy16514 19 AVFSDLQRKGLEKRFQ-----IQKYISKPDRKKLAEKLGLK--DSQVKIWFQ 63 (155)
Q Consensus 19 ~~~t~~ql~~L~~~F~-----~~~~p~~~~~~~LA~~l~l~--~~~V~~WFq 63 (155)
..++..++..|...|. .+.+.+..+...+...+|+. ...|..+|.
T Consensus 12 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 63 (90)
T 1avs_A 12 AFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIE 63 (90)
T ss_dssp HHBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3588999999999985 35678888888888888754 445666663
No 206
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=31.01 E-value=23 Score=20.11 Aligned_cols=21 Identities=24% Similarity=0.397 Sum_probs=18.0
Q ss_pred HHHHHHHhCCCccchhhhhhh
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQN 64 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqN 64 (155)
...+|..+|++...|..|..+
T Consensus 16 ~~~~A~~lgis~~~vs~~~~~ 36 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVRA 36 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 567899999999999999843
No 207
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=30.97 E-value=59 Score=22.54 Aligned_cols=48 Identities=21% Similarity=0.184 Sum_probs=37.7
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhhH
Q psy16514 19 AVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 19 ~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk~ 72 (155)
..+|+.+..+|.-..... ...+||..++++.+.|++...|=|.|..-.
T Consensus 153 ~~Lt~rE~~vl~~l~~g~------s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~~ 200 (215)
T 1a04_A 153 NQLTPRERDILKLIAQGL------PNKMIARRLDITESTVKVHVKHMLKKMKLK 200 (215)
T ss_dssp GGSCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred cCCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHHHHHHHHHHHcCCC
Confidence 458998888887665432 367899999999999999998888776543
No 208
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=30.95 E-value=20 Score=21.18 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=20.4
Q ss_pred HHHHHHHHhCCCccchhhhhhhhH
Q psy16514 43 DRKKLAEKLGLKDSQVKIWFQNRR 66 (155)
Q Consensus 43 ~~~~LA~~l~l~~~~V~~WFqNrR 66 (155)
....||..+|++...|..|-.+++
T Consensus 26 sq~~lA~~~gis~~~i~~~e~g~~ 49 (82)
T 3s8q_A 26 TQEDLAYKSNLDRTYISGIERNSR 49 (82)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CHHHHHHHhCcCHHHHHHHHCCCC
Confidence 356899999999999999998764
No 209
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=30.77 E-value=9.6 Score=27.12 Aligned_cols=44 Identities=9% Similarity=0.023 Sum_probs=33.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~r 70 (155)
+.+....|....|-. .....||...|++...|...|.++-.=..
T Consensus 46 l~aA~~lf~~~G~~~-~t~~~IA~~Agvs~~t~Y~~F~sK~~L~~ 89 (225)
T 2id3_A 46 LLAAGDALAADGFDA-LDLGEIARRAGVGKTTVYRRWGTPGGLAA 89 (225)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHHCCCHHHHHHHCCCHHHHHH
Confidence 445555677776643 46778899999999999999998765444
No 210
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=30.44 E-value=21 Score=21.22 Aligned_cols=22 Identities=32% Similarity=0.309 Sum_probs=19.5
Q ss_pred HHHHHHHHhCCCccchhhhhhh
Q psy16514 43 DRKKLAEKLGLKDSQVKIWFQN 64 (155)
Q Consensus 43 ~~~~LA~~l~l~~~~V~~WFqN 64 (155)
....||..+|++...|..|-.+
T Consensus 25 tq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 25 SLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHcC
Confidence 3567999999999999999988
No 211
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=30.23 E-value=21 Score=21.65 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCccchhhhhhhhH
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQNRR 66 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqNrR 66 (155)
...||..+|++...|..|..+++
T Consensus 29 q~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 29 QKDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999998765
No 212
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=30.08 E-value=35 Score=23.89 Aligned_cols=44 Identities=5% Similarity=-0.077 Sum_probs=32.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~r 70 (155)
+.+....|....|- ......||...|++...|...|.+|-.=..
T Consensus 34 l~AA~~lf~~~G~~-~~t~~~IA~~aGvs~~tlY~~F~sK~~Ll~ 77 (217)
T 3hta_A 34 IDAAIRVVGQKGIA-GLSHRTVAAEADVPLGSTTYHFATLDDLMV 77 (217)
T ss_dssp HHHHHHHHHHHTGG-GCCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHcCcc-cCCHHHHHHHcCCCcchhhhcCCCHHHHHH
Confidence 44555557777763 345778899999999999999998766433
No 213
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=29.92 E-value=21 Score=21.99 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.9
Q ss_pred HHHHHHHhCCCccchhhhhhhhHH
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQNRRM 67 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqNrR~ 67 (155)
...||..+|++...|..|..+++.
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~~ 43 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRST 43 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999988654
No 214
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=29.91 E-value=54 Score=18.92 Aligned_cols=45 Identities=11% Similarity=0.277 Sum_probs=32.4
Q ss_pred ccCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCC--Cccchhhhhh
Q psy16514 19 AVFSDLQRKGLEKRFQI-----QKYISKPDRKKLAEKLGL--KDSQVKIWFQ 63 (155)
Q Consensus 19 ~~~t~~ql~~L~~~F~~-----~~~p~~~~~~~LA~~l~l--~~~~V~~WFq 63 (155)
..++..++..|...|.. +.+.+..+...+...+|+ +...|..+|.
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 6 KVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp CSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 46789999999999953 457777887777777774 4445666653
No 215
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=29.90 E-value=16 Score=25.42 Aligned_cols=43 Identities=12% Similarity=0.129 Sum_probs=33.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
+.+-...|....|-. .....||...|++...|..+|.||-.=.
T Consensus 15 l~AA~~lf~~~G~~~-~s~~~IA~~AGvs~gtlY~~F~sKe~L~ 57 (203)
T 2np5_A 15 AAALFDVAAESGLEG-ASVREVAKRAGVSIGAVQHHFSTKDEMF 57 (203)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 555566688777654 4577889999999999999999976543
No 216
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=29.87 E-value=26 Score=24.28 Aligned_cols=44 Identities=16% Similarity=0.114 Sum_probs=33.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~r 70 (155)
+.+-...|....|-.. ....||...|++...|..+|.||-.=..
T Consensus 17 l~aA~~lf~~~G~~~~-s~~~IA~~aGvskgtlY~~F~sKe~L~~ 60 (210)
T 2wui_A 17 LDAAERVFLEKGVGTT-AMADLADAAGVSRGAVYGHYKNKIEVCL 60 (210)
T ss_dssp HHHHHHHHHHSCTTTC-CHHHHHHHHTSCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHcCcccc-CHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 4455566888877653 4677899999999999999998765443
No 217
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=29.25 E-value=12 Score=27.09 Aligned_cols=44 Identities=7% Similarity=0.043 Sum_probs=33.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~r 70 (155)
+.+....|....|-. .....||...|++...|..+|.|+-.=..
T Consensus 52 l~aA~~lf~~~G~~~-~t~~~IA~~aGvs~~t~Y~~F~sKe~Ll~ 95 (245)
T 3aqt_A 52 ITSARTLMAERGVDN-VGIAEITEGANIGTGTFYNYFPDREQLLQ 95 (245)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHTTSCGGGGGGTCSSHHHHHH
T ss_pred HHHHHHHHHhcCccc-CcHHHHHHHhCCChHHHHHHcCCHHHHHH
Confidence 455556677776654 45678899999999999999999766443
No 218
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=29.06 E-value=97 Score=19.88 Aligned_cols=46 Identities=11% Similarity=0.242 Sum_probs=33.8
Q ss_pred CcccCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCC--ccchhhhh
Q psy16514 17 RRAVFSDLQRKGLEKRFQI-----QKYISKPDRKKLAEKLGLK--DSQVKIWF 62 (155)
Q Consensus 17 ~R~~~t~~ql~~L~~~F~~-----~~~p~~~~~~~LA~~l~l~--~~~V~~WF 62 (155)
....++..++..|...|.. +.+.+..+...+...+|+. ...+...|
T Consensus 13 ~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~ 65 (161)
T 3fwb_A 13 LNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLI 65 (161)
T ss_dssp TTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3578999999999999963 5678888888877777754 34455444
No 219
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=28.88 E-value=35 Score=23.54 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=33.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
+.+....|....|-. .....||...|++...|..+|.||-.=.
T Consensus 17 l~aA~~lf~~~G~~~-~s~~~IA~~aGvskgtlY~~F~sKe~L~ 59 (210)
T 2xdn_A 17 IEAAERAFYKRGVAR-TTLADIAELAGVTRGAIYWHFNNKAELV 59 (210)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCTTHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCccc-CcHHHHHHHHCCChHHHHHHhCCHHHHH
Confidence 455556688887765 3467789999999999999999876543
No 220
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=28.85 E-value=45 Score=19.39 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=28.9
Q ss_pred ccCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhC-CCccchhhhhh
Q psy16514 19 AVFSDLQRKGLEKRFQI-----QKYISKPDRKKLAEKLG-LKDSQVKIWFQ 63 (155)
Q Consensus 19 ~~~t~~ql~~L~~~F~~-----~~~p~~~~~~~LA~~l~-l~~~~V~~WFq 63 (155)
..+++.+...|...|.. +.+.+..+...+...+| ++...|..+|.
T Consensus 3 ~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 53 (86)
T 2opo_A 3 AEDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMA 53 (86)
T ss_dssp ---CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred ccCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 35678888888888853 45777777777766666 44455665553
No 221
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=28.81 E-value=42 Score=21.92 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhh
Q psy16514 22 SDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQN 64 (155)
Q Consensus 22 t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqN 64 (155)
+..|...++.....-.. .+.....||..+|+.+..+..|++-
T Consensus 2 ~~~~~~l~~~i~~~~~~-~p~~~~~la~~~~~~~~~~~~~l~~ 43 (121)
T 2pjp_A 2 SEEQQAIWQKAEPLFGD-EPWWVRDLAKETGTDEQAMRLTLRQ 43 (121)
T ss_dssp CHHHHHHHHHHGGGCSS-SCEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 45565555555433221 2235558999999999999988853
No 222
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=28.71 E-value=1.1e+02 Score=25.12 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q psy16514 21 FSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRN 71 (155)
Q Consensus 21 ~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk 71 (155)
++..+..+|...|-.... ......++|..+|++...|+.+....+.|.|+
T Consensus 376 L~ereR~VI~LRygL~~~-e~~TleEIAe~LgIS~erVRqi~~RAlkKLR~ 425 (438)
T 1l9z_H 376 LSEREAMVLKLRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLKY 425 (438)
T ss_pred CCHHHHHHHHHHHhccCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 455666666666642110 22467789999999999999999888888873
No 223
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=28.62 E-value=16 Score=25.33 Aligned_cols=43 Identities=14% Similarity=0.062 Sum_probs=32.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
+.+....|....|-. .....||...|++...|...|.|+-.=.
T Consensus 18 l~aA~~l~~e~G~~~-~s~~~IA~~agvs~~t~Y~hF~~Ke~Ll 60 (198)
T 3cjd_A 18 IDLAEAQIEAEGLAS-LRARELARQADCAVGAIYTHFQDLNALT 60 (198)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHhCChhh-cCHHHHHHHhCCCccHHHHHhCCHHHHH
Confidence 555566677766643 4577889999999999999999976543
No 224
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=28.57 E-value=35 Score=23.11 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=33.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
+.+....|....|-.. ....||...|++...+..+|.++-.=.
T Consensus 9 l~aA~~lf~~~G~~~~-s~~~IA~~agvsk~t~Y~~F~sK~~L~ 51 (190)
T 3vpr_A 9 LEEAAKLFTEKGYEAT-SVQDLAQALGLSKAALYHHFGSKEEIL 51 (190)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 4555666888777653 467789999999999999999987654
No 225
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=28.40 E-value=40 Score=23.01 Aligned_cols=42 Identities=10% Similarity=0.200 Sum_probs=33.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+.+....|....|-.. ....||...|++...+...|.++-.=
T Consensus 18 l~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~~K~~L 59 (189)
T 3vp5_A 18 YDACLNEFQTHSFHEA-KIMHIVKALDIPRGSFYQYFEDLKDA 59 (189)
T ss_dssp HHHHHHHHHHSCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHCCcccc-cHHHHHHHhCCChHHHHHHCCCHHHH
Confidence 5556666888777554 67788999999999999999987653
No 226
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=27.89 E-value=19 Score=26.67 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=33.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
+......|....|-. .....||...|++...|..+|.++-.=.
T Consensus 47 l~AA~~lf~e~G~~~-~S~~~IA~~AGVs~~tlY~hF~sKe~Ll 89 (273)
T 3c07_A 47 LETAMRLFQERGYDR-TTMRAIAQEAGVSVGNAYYYFAGKEHLI 89 (273)
T ss_dssp HHHHHHHHHHTCSTT-CCHHHHHHHHTSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHhCCccc-cCHHHHHHHHCCCHHHHHHHcCCHHHHH
Confidence 555666688877754 4567789999999999999999876543
No 227
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=27.88 E-value=44 Score=22.83 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=33.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+..-...|....|-. .....||...|++...+...|.|+-.=
T Consensus 18 l~aA~~lf~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~sKe~L 59 (197)
T 2hyt_A 18 LATARKVFSERGYAD-TSMDDLTAQASLTRGALYHHFGDKKGL 59 (197)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTCCTTHHHHHHSSHHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 555566688888765 346778999999999999999987653
No 228
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=27.54 E-value=48 Score=18.67 Aligned_cols=42 Identities=17% Similarity=0.244 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHhCCCc--cchhhhh
Q psy16514 21 FSDLQRKGLEKRFQ-----IQKYISKPDRKKLAEKLGLKD--SQVKIWF 62 (155)
Q Consensus 21 ~t~~ql~~L~~~F~-----~~~~p~~~~~~~LA~~l~l~~--~~V~~WF 62 (155)
++..++..|...|. .+.+.+..+...+...+|... ..|..+|
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 49 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELM 49 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 46677888888884 345777778777777777543 3455555
No 229
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=27.44 E-value=22 Score=24.38 Aligned_cols=42 Identities=12% Similarity=0.205 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+......|....|-. .....||...|++...|...|.|+-.=
T Consensus 32 l~aA~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L 73 (217)
T 3mvp_A 32 LQVAKDLFSDKTYFN-VTTNEIAKKADVSVGTLYAYFASKEDI 73 (217)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCccc-cCHHHHHHHhCCChhHHHHHcCCHHHH
Confidence 445555577766544 456778999999999999999987653
No 230
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=27.28 E-value=34 Score=23.29 Aligned_cols=45 Identities=13% Similarity=0.171 Sum_probs=34.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRN 71 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk 71 (155)
+.+....|....|-. .....||...|++...+...|.++-.=...
T Consensus 19 l~aa~~lf~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 63 (195)
T 2iu5_A 19 AKAFKDLMQSNAYHQ-ISVSDIMQTAKIRRQTFYNYFQNQEELLSW 63 (195)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTSCGGGGGGTCSSHHHHHHH
T ss_pred HHHHHHHHHhCCCCe-eCHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 566667788877654 457788999999999999999997765443
No 231
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=27.27 E-value=1.3e+02 Score=19.66 Aligned_cols=44 Identities=7% Similarity=-0.006 Sum_probs=30.5
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHh--------C--CCccchhhhhhhh
Q psy16514 19 AVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKL--------G--LKDSQVKIWFQNR 65 (155)
Q Consensus 19 ~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l--------~--l~~~~V~~WFqNr 65 (155)
..++..+...+...+..++..+..+. +..+ | ++...|..|+...
T Consensus 89 ~~~~~~~~~~I~~~~~~~~~~s~~~i---~~~l~~~~~~~~g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 89 KVATPKVVEKIAEYKRQNPTMFAWEI---RDRLLAERVCDNDTVPSVSSINRIIRTK 142 (149)
T ss_dssp SSSCHHHHHHHHHHHHHCTTCCHHHH---HHHHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHhCcchhHHHH---HHHHHHhcccccCCCcCHHHHHHHHHHH
Confidence 46788888888888877766665443 3333 5 6778888888643
No 232
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=27.23 E-value=29 Score=23.49 Aligned_cols=45 Identities=11% Similarity=0.223 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q psy16514 25 QRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70 (155)
Q Consensus 25 ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~r 70 (155)
=+.+....|....|-. .....+|...|++...|..+|.++-.=..
T Consensus 12 Il~aA~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~~L~~ 56 (192)
T 2zcm_A 12 IIDNAITLFSEKGYDG-TTLDDISKSVNIKKASLYYHYDNKEEIYR 56 (192)
T ss_dssp HHHHHHHHHHHHCTTT-CCHHHHHHHTTCCHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHcCccc-CCHHHHHHHhCCChHHHHHHCCCHHHHHH
Confidence 3556667788887755 45677899999999999999999765443
No 233
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=27.11 E-value=26 Score=21.77 Aligned_cols=23 Identities=13% Similarity=0.371 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCccchhhhhhhhH
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQNRR 66 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqNrR 66 (155)
...||..+|++...|..|-.+++
T Consensus 46 q~elA~~lgvs~~~is~~E~G~~ 68 (99)
T 2ppx_A 46 QEEFSARYHIPLGTLRDWEQGRS 68 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHcCCC
Confidence 46799999999999999998764
No 234
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=27.09 E-value=26 Score=22.26 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=21.1
Q ss_pred HHHHHHHHhCCCccchhhhhhhhHH
Q psy16514 43 DRKKLAEKLGLKDSQVKIWFQNRRM 67 (155)
Q Consensus 43 ~~~~LA~~l~l~~~~V~~WFqNrR~ 67 (155)
....||..+|++...|..|-.+++.
T Consensus 24 sq~~lA~~~gis~~~i~~~e~g~~~ 48 (114)
T 3op9_A 24 KNHQIAELLNVQTRTVAYYMSGETK 48 (114)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 3567999999999999999988643
No 235
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=27.02 E-value=26 Score=20.89 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=21.0
Q ss_pred HHHHHHHHhCCCccchhhhhhhhH
Q psy16514 43 DRKKLAEKLGLKDSQVKIWFQNRR 66 (155)
Q Consensus 43 ~~~~LA~~l~l~~~~V~~WFqNrR 66 (155)
....||..+|++...|..|..+++
T Consensus 29 sq~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 356899999999999999998875
No 236
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=26.84 E-value=41 Score=22.46 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=33.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+.+....|....|-. .....||...|++...+..+|.++-.=
T Consensus 15 l~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~L 56 (195)
T 3ppb_A 15 LETALQLFVSQGFHG-TSTATIAREAGVATGTLFHHFPSKEQL 56 (195)
T ss_dssp HHHHHHHHHHTCSTT-SCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHhcCccc-CCHHHHHHHhCCChhHHHHHcCCHHHH
Confidence 556666788877755 457788999999999999999997664
No 237
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=26.69 E-value=26 Score=19.84 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=19.7
Q ss_pred HHHHHHHhC--CCccchhhhhhhhH
Q psy16514 44 RKKLAEKLG--LKDSQVKIWFQNRR 66 (155)
Q Consensus 44 ~~~LA~~l~--l~~~~V~~WFqNrR 66 (155)
...||..+| ++...|..|..+++
T Consensus 24 q~~lA~~~g~~is~~~i~~~e~g~~ 48 (71)
T 2ewt_A 24 LHGVEEKSQGRWKAVVVGSYERGDR 48 (71)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCCcCCHHHHHHHHCCCC
Confidence 567999999 99999999998754
No 238
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=26.43 E-value=28 Score=23.73 Aligned_cols=43 Identities=7% Similarity=0.067 Sum_probs=33.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
+.+....|....|-. .....||...|++...|..+|.++-.=.
T Consensus 15 l~aa~~l~~~~G~~~-~ti~~IA~~agvs~~t~Y~~F~sK~~L~ 57 (193)
T 2dg8_A 15 LAATLDLIAEEGIAR-VSHRRIAQRAGVPLGSMTYHFTGIEQLL 57 (193)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTSCTHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHhCCCchhhheeCCCHHHHH
Confidence 555666677777643 4577889999999999999999876643
No 239
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=26.25 E-value=22 Score=24.01 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=27.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+.+-...|....|-. .....||...|++...|...|.|+..=
T Consensus 18 l~aA~~lf~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~L 59 (199)
T 3on2_A 18 LARAESTLEKDGVDG-LSLRQLAREAGVSHAAPSKHFRDRQAL 59 (199)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHTC-----CCCSSSSHHHH
T ss_pred HHHHHHHHHhcChhh-hhHHHHHHHhCCChHHHHHHhCCHHHH
Confidence 555556677766544 356778999999999999999997653
No 240
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=26.21 E-value=48 Score=23.25 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=31.2
Q ss_pred cccCCHHHHHHHHHHHhhcCCCC----HHHHHHHHHHhCCCccchhhhhhhh
Q psy16514 18 RAVFSDLQRKGLEKRFQIQKYIS----KPDRKKLAEKLGLKDSQVKIWFQNR 65 (155)
Q Consensus 18 R~~~t~~ql~~L~~~F~~~~~p~----~~~~~~LA~~l~l~~~~V~~WFqNr 65 (155)
+..|+.++.......-...-.|. .....++|..+|++...+..|-...
T Consensus 21 ~r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~~ 72 (155)
T 2ao9_A 21 KQKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTKN 72 (155)
T ss_dssp HTTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHHC
T ss_pred hhhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHcC
Confidence 34588888776543321111111 2367789999999999999998743
No 241
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=26.06 E-value=42 Score=20.81 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=19.3
Q ss_pred HHHHHHHHHhCCCccchhhhhhhh
Q psy16514 42 PDRKKLAEKLGLKDSQVKIWFQNR 65 (155)
Q Consensus 42 ~~~~~LA~~l~l~~~~V~~WFqNr 65 (155)
.....||..+|++++.+...|+..
T Consensus 20 ~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 20 FTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 457789999999999888888653
No 242
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=26.00 E-value=64 Score=21.72 Aligned_cols=42 Identities=10% Similarity=0.017 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHhCCCccchhhhhhhh
Q psy16514 21 FSDLQRKGLEKRFQI----QKYISKPDRKKLAEKLGLKDSQVKIWFQNR 65 (155)
Q Consensus 21 ~t~~ql~~L~~~F~~----~~~p~~~~~~~LA~~l~l~~~~V~~WFqNr 65 (155)
++..++..|...+.. ..+|+. ..||..+|++...|....++-
T Consensus 30 Ls~~E~~lLl~L~~~~~~g~~~ps~---~~LA~~~~~s~~~v~~~L~~L 75 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTP---NQLQEGMSISVEECTNRLRMF 75 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCH---HHHHTTSSSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCH---HHHHHHHCcCHHHHHHHHHHH
Confidence 567777777777553 456665 478999999999998888753
No 243
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=25.97 E-value=22 Score=21.50 Aligned_cols=20 Identities=15% Similarity=0.579 Sum_probs=16.9
Q ss_pred HHHHHHHhCCCccchhhhhh
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQ 63 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFq 63 (155)
..++|..+|++...|+.|-+
T Consensus 8 i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWER 27 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45789999999999999954
No 244
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=25.86 E-value=37 Score=22.77 Aligned_cols=42 Identities=7% Similarity=0.048 Sum_probs=32.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+.+....|....|-. .....||...|++...+...|.|+-.=
T Consensus 8 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L 49 (194)
T 3bqz_B 8 LGVAKELFIKNGYNA-TTTGEIVKLSESSKGNLYYHFKTKENL 49 (194)
T ss_dssp HHHHHHHHHHHTTTT-CCHHHHHHHTTCCHHHHHHHTSSHHHH
T ss_pred HHHHHHHHHHcCCcc-CCHHHHHHHhCCCchhHHHhCCCHHHH
Confidence 555566677777655 346778999999999999999987653
No 245
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=25.76 E-value=24 Score=24.67 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=25.6
Q ss_pred HHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 30 EKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 30 ~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
...|....|-. .....||...|++...|..+|.||-.=.
T Consensus 34 ~~lf~e~G~~~-~s~~~IA~~aGvskgtlY~yF~sKe~L~ 72 (214)
T 2oer_A 34 VQVLASEGAQR-FTTARVAERAGVSIGSLYQYFPNKAAIL 72 (214)
T ss_dssp HHC------CC-CCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHhhCccc-ccHHHHHHHhCCCCchHHHhCCCHHHHH
Confidence 34477777654 4577789999999999999999976543
No 246
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=25.74 E-value=32 Score=20.13 Aligned_cols=23 Identities=9% Similarity=0.185 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCccchhhhhhhhH
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQNRR 66 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqNrR 66 (155)
...||..+|++...|..++.+++
T Consensus 3 ~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998876
No 247
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=25.35 E-value=1.2e+02 Score=19.74 Aligned_cols=44 Identities=16% Similarity=0.358 Sum_probs=33.4
Q ss_pred cCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHhCC---Cccchhhhhh
Q psy16514 20 VFSDLQRKGLEKRFQ-----IQKYISKPDRKKLAEKLGL---KDSQVKIWFQ 63 (155)
Q Consensus 20 ~~t~~ql~~L~~~F~-----~~~~p~~~~~~~LA~~l~l---~~~~V~~WFq 63 (155)
.++..++..|...|. .+.+.+..+...+...+|+ +...|..+|.
T Consensus 18 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~ 69 (166)
T 2mys_B 18 MFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIK 69 (166)
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 678899999999985 3568888888888888876 4445666664
No 248
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=25.24 E-value=15 Score=26.05 Aligned_cols=44 Identities=9% Similarity=0.220 Sum_probs=32.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~r 70 (155)
+.+....|....|-. .....||...|++...|..+|.++-.=..
T Consensus 36 l~aA~~lf~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~sK~~L~~ 79 (226)
T 2pz9_A 36 VAAAKEEFARHGIAG-ARVDRIAKQARTSKERVYAYFRSKEALYA 79 (226)
T ss_dssp HHHHHHHHHHHHHHH-CCHHHHHHHTTSCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHhCccc-CcHHHHHHHHCCChHHHHHHcCCHHHHHH
Confidence 455555676665432 35678899999999999999998766443
No 249
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=25.10 E-value=41 Score=23.02 Aligned_cols=42 Identities=10% Similarity=0.043 Sum_probs=33.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+.+-...|....|-. .....||...|++...|...|.||-.=
T Consensus 13 l~aA~~lf~~~G~~~-ts~~~IA~~aGvs~gtlY~~F~sKe~L 54 (197)
T 2gen_A 13 LQAALACFSEHGVDA-TTIEMIRDRSGASIGSLYHHFGNKERI 54 (197)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHCCCHHHHHHHTCSHHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHHCCChHHHHHHCCCHHHH
Confidence 555566688877755 457778999999999999999987654
No 250
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=24.74 E-value=36 Score=23.60 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=34.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
+.+-...|....|-. .....||...|++...|...|.||-.=.
T Consensus 17 l~aA~~lf~~~G~~~-~s~~~IA~~aGvskgtlY~~F~sKe~L~ 59 (219)
T 2w53_A 17 LDAAEACFHEHGVAR-TTLEMIGARAGYTRGAVYWHFKNKSEVL 59 (219)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCCchHHhhcCCCHHHHH
Confidence 566667788888765 4577889999999999999999976643
No 251
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=24.49 E-value=44 Score=22.99 Aligned_cols=44 Identities=7% Similarity=0.118 Sum_probs=33.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~r 70 (155)
+.+-...|....|-. .....||...|++...|..+|.+|-.=..
T Consensus 14 l~aA~~lf~~~G~~~-~s~~~IA~~aGvs~~tiY~~F~sKe~L~~ 57 (202)
T 2d6y_A 14 FEAAVAEFARHGIAG-ARIDRIAAEARANKQLIYAYYGNKGELFA 57 (202)
T ss_dssp HHHHHHHHHHHTTTS-CCHHHHHHHHTCCHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 555566688877655 34677899999999999999998765433
No 252
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=24.34 E-value=51 Score=21.89 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=31.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhh-hHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQN-RRM 67 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqN-rR~ 67 (155)
+.+....|....|-. .....||...|++...+...|.| +-.
T Consensus 12 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~~sK~~ 53 (191)
T 1sgm_A 12 LHTASRLSQLQGYHA-TGLNQIVKESGAPKGSLYHFFPNGKEE 53 (191)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHCCCSCHHHHSTTTCHHH
T ss_pred HHHHHHHHHHcCccc-cCHHHHHHHHCCCchhHHHHccccHHH
Confidence 555666677777654 34677899999999999999998 654
No 253
>1mij_A Protein prospero; homeodomain, DNA-binding domain, prospero domain, 4-helix bundle, transcription; HET: MSE; 2.05A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1xpx_A
Probab=24.27 E-value=69 Score=22.15 Aligned_cols=54 Identities=17% Similarity=0.229 Sum_probs=37.0
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCC---ccchhhhhhhhHHHHhhH
Q psy16514 19 AVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLK---DSQVKIWFQNRRMKWRNS 72 (155)
Q Consensus 19 ~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~---~~~V~~WFqNrR~k~rk~ 72 (155)
+.+|+.-|..-+-.|-.++||+......--.-.... -.|+-.||.|=|-=.-.+
T Consensus 2 ~~Ltp~HLkKAKLMFfytRYPsS~~LK~yFpDvkFnr~~TsQLiKWFSNFREFyYIQ 58 (152)
T 1mij_A 2 STLTPMHLRKAKLMFFWVRYPSSAVLKMYFPDIKFNKNNTAQLVKWFSNFREFYYIQ 58 (152)
T ss_dssp CCCCHHHHHHHHHHTTTCSSCCHHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHhhhhheeeecCCcHHHHHHhCCchhhhhhhHHHHHHHHHhhHHHHHHH
Confidence 467888888888999999999976544321111221 247779999998755443
No 254
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=24.26 E-value=35 Score=22.96 Aligned_cols=42 Identities=12% Similarity=0.221 Sum_probs=32.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+.+....|....|-. .....||...|++...|...|.|+-.=
T Consensus 13 l~aa~~l~~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~L 54 (199)
T 3qbm_A 13 VAQAAALFNVSGYAG-TAISDIMAATGLEKGGIYRHFESKEQL 54 (199)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHhCcCc-CCHHHHHHHhCCCccHHHHhCCCHHHH
Confidence 455566677777655 346778999999999999999987653
No 255
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=24.26 E-value=93 Score=20.27 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=29.2
Q ss_pred CCcccCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCC
Q psy16514 16 MRRAVFSDLQRKGLEKRFQI-----QKYISKPDRKKLAEKLGLK 54 (155)
Q Consensus 16 r~R~~~t~~ql~~L~~~F~~-----~~~p~~~~~~~LA~~l~l~ 54 (155)
+.+..++..++..|...|.. +.+.+..+...+...+|+.
T Consensus 17 ~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~ 60 (169)
T 3qrx_A 17 KGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFE 60 (169)
T ss_dssp ---CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCC
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCC
Confidence 34678999999999999953 4678888888877777764
No 256
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=24.25 E-value=40 Score=23.00 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=24.4
Q ss_pred HHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHH
Q psy16514 32 RFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRM 67 (155)
Q Consensus 32 ~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~ 67 (155)
.|....|-. .....||...|++...+..+|.|+-.
T Consensus 37 lf~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~ 71 (212)
T 3nxc_A 37 LESSDGSQR-ITTAKLAASVGVSEAALYRHFPSKTR 71 (212)
T ss_dssp HHC-------CCHHHHHHHTTSCHHHHHTTCSSHHH
T ss_pred HHhcCChhh-cCHHHHHHHhCCChhHHHHHCCCHHH
Confidence 455555544 45778899999999999999998766
No 257
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=24.18 E-value=48 Score=22.43 Aligned_cols=43 Identities=19% Similarity=0.111 Sum_probs=33.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
+.+....|....|-. .....||...|++...|..+|.++-.=.
T Consensus 10 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L~ 52 (185)
T 2yve_A 10 LRTAIDYIGEYSLET-LSYDSLAEATGLSKSGLIYHFPSRHALL 52 (185)
T ss_dssp HHHHHHHHHHSCSTT-CCHHHHHHHHCCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcChhh-ccHHHHHHHhCCChHHHHHhCcCHHHHH
Confidence 555566688777654 4577889999999999999999876543
No 258
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=24.18 E-value=39 Score=23.23 Aligned_cols=43 Identities=12% Similarity=0.161 Sum_probs=33.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
+.+-...|....|-.. ....+|...|++...|..+|.|+-.=.
T Consensus 16 l~aA~~lf~~~G~~~~-s~~~IA~~aGvs~~t~Y~~F~sKe~L~ 58 (210)
T 3vib_A 16 MLAALETFYRKGIART-SLNEIAQAAGVTRDALYWHFKNKEDLF 58 (210)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHHCcCHHHHHHHCCCHHHHH
Confidence 4455566888887664 467789999999999999999976543
No 259
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=24.04 E-value=34 Score=22.59 Aligned_cols=43 Identities=7% Similarity=0.070 Sum_probs=32.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
+......|....|- ......||...|++...+...|.+|-.=.
T Consensus 10 l~aa~~l~~~~G~~-~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~ 52 (170)
T 3egq_A 10 IEAALRLYMKKPPH-EVSIEEIAREAKVSKSLIFYHFESKQKLL 52 (170)
T ss_dssp HHHHHHHHTTSCGG-GCCHHHHHHHHTSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHhcCCc-cCcHHHHHHHhCCCchhHHHHcCCHHHHH
Confidence 44455567777664 34577889999999999999999876543
No 260
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=23.93 E-value=34 Score=23.98 Aligned_cols=41 Identities=10% Similarity=0.137 Sum_probs=32.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRM 67 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~ 67 (155)
+..-...|....|-. .....||...|++...|..+|.+|-.
T Consensus 20 l~AA~~lf~~~G~~~-~s~~~IA~~AGvs~~tlY~~F~sKe~ 60 (208)
T 3v6g_A 20 VEAAERVIARQGLGG-LSHRRVAAEANVPVGSTTYYFNDLDA 60 (208)
T ss_dssp HHHHHHHHHHHCTTC-CCHHHHHHHHTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCCchhHHHHcCCHHH
Confidence 455556688887755 34677899999999999999998764
No 261
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=23.81 E-value=1.7e+02 Score=19.51 Aligned_cols=46 Identities=9% Similarity=0.024 Sum_probs=35.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRN 71 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk 71 (155)
.......|......+......+|..+||....+..++.+...+..-
T Consensus 85 ~~~~~~lf~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v 130 (175)
T 3gyk_A 85 EAFHWALMGMSGKANETGVLRIAREVGLDTEQLQRDMEAPEVTAHI 130 (175)
T ss_dssp HHHHHHHHTCSSCCSHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHH
Confidence 3445566877777788888899999999999988888776655443
No 262
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=23.64 E-value=47 Score=22.68 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=32.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+.+....|....|-. .....||...|++...|...|.|+-.=
T Consensus 19 l~aA~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~~L 60 (217)
T 3nrg_A 19 IDVLLDEFAQNDYDS-VSINRITERAGIAKGSFYQYFADKKDC 60 (217)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTCCTTGGGGTCSSHHHH
T ss_pred HHHHHHHHHhcCccc-CCHHHHHHHhCCcHHHHHHHcCCHHHH
Confidence 455556687777653 457788999999999999999997654
No 263
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=23.28 E-value=34 Score=21.95 Aligned_cols=23 Identities=9% Similarity=0.209 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCccchhhhhhhhH
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQNRR 66 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqNrR 66 (155)
...||..+|++...|..|-.+++
T Consensus 39 q~elA~~~gis~~~is~~E~G~~ 61 (111)
T 3mlf_A 39 QKELGDLFKVSSRTIQNMEKDST 61 (111)
T ss_dssp HHHHHHHHTSCHHHHHHHHHCCT
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 56799999999999999998765
No 264
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=23.15 E-value=33 Score=21.34 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCccchhhhhhhhH
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQNRR 66 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqNrR 66 (155)
...||..+|++...|..|..+++
T Consensus 34 q~~lA~~~gis~~~is~~e~g~~ 56 (104)
T 3cec_A 34 TANFAEILGVSNQTIQEVINGQR 56 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCc
Confidence 56899999999999999998764
No 265
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=23.14 E-value=52 Score=22.04 Aligned_cols=44 Identities=14% Similarity=0.200 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 25 QRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 25 ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
-+.+....|....|-. .....||...|++...+...|.|+-.=.
T Consensus 16 il~aa~~lf~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~L~ 59 (196)
T 3he0_A 16 ILAAAEQLIAESGFQG-LSMQKLANEAGVAAGTIYRYFSDKEHLL 59 (196)
T ss_dssp HHHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHhCccc-CCHHHHHHHhCCCcchHHHhcCCHHHHH
Confidence 3566667788887755 4577789999999999999999876644
No 266
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=23.04 E-value=56 Score=21.72 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=33.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
+......|....|-. .....+|...|++...|...|.|+-.=.
T Consensus 13 l~aA~~l~~~~G~~~-~s~~~IA~~agvs~~tly~~F~sK~~L~ 55 (180)
T 2fd5_A 13 LGAATQALLERGAVE-PSVGEVMGAAGLTVGGFYAHFQSKDALM 55 (180)
T ss_dssp HHHHHHHHHHHTTTS-CCHHHHHHHTTCCGGGGGGTCSCHHHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCCccHHHHHCCCHHHHH
Confidence 555566688877755 4567889999999999999999876543
No 267
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=22.90 E-value=38 Score=20.45 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=22.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhh
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWF 62 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WF 62 (155)
..+| .++..+.--......+||..+|++.+.|....
T Consensus 17 ~~IL-~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L 52 (77)
T 1qgp_A 17 QRIL-KFLEELGEGKATTAHDLSGKLGTPKKEINRVL 52 (77)
T ss_dssp HHHH-HHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHH
T ss_pred HHHH-HHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 3343 44444542223456789999999998876555
No 268
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=22.86 E-value=1.3e+02 Score=18.48 Aligned_cols=38 Identities=5% Similarity=0.212 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhh
Q psy16514 21 FSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWF 62 (155)
Q Consensus 21 ~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WF 62 (155)
+...+...+...+..+.. .+...|+.||++...+..|.
T Consensus 38 l~~~Er~~I~~aL~~~~G----N~s~AA~~LGISR~TLyrKL 75 (81)
T 1umq_A 38 ADRVRWEHIQRIYEMCDR----NVSETARRLNMHRRTLQRIL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHTTS----CHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC----CHHHHHHHhCCCHHHHHHHH
Confidence 334455666666666542 35677999999987654443
No 269
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=22.84 E-value=34 Score=21.31 Aligned_cols=21 Identities=33% Similarity=0.316 Sum_probs=19.3
Q ss_pred HHHHHHHhCCCccchhhhhhh
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQN 64 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqN 64 (155)
...||..+|++...|..|..+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 17 LSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 567999999999999999988
No 270
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=22.70 E-value=1.5e+02 Score=18.55 Aligned_cols=43 Identities=16% Similarity=0.342 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCCc--cchhhhhh
Q psy16514 21 FSDLQRKGLEKRFQI-----QKYISKPDRKKLAEKLGLKD--SQVKIWFQ 63 (155)
Q Consensus 21 ~t~~ql~~L~~~F~~-----~~~p~~~~~~~LA~~l~l~~--~~V~~WFq 63 (155)
|+..|+..|...|.. +.+.+..+...+...+|+.. ..|...|.
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 50 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMS 50 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCCCCHHHHHTTTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 578899999999963 56888888888888887643 34554443
No 271
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=22.61 E-value=72 Score=20.24 Aligned_cols=45 Identities=11% Similarity=0.176 Sum_probs=32.8
Q ss_pred ccCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCCccchhhhhh
Q psy16514 19 AVFSDLQRKGLEKRFQI-----QKYISKPDRKKLAEKLGLKDSQVKIWFQ 63 (155)
Q Consensus 19 ~~~t~~ql~~L~~~F~~-----~~~p~~~~~~~LA~~l~l~~~~V~~WFq 63 (155)
..++..+...|...|.. +.+.+..+...+....+++...|..+|.
T Consensus 6 w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i~~ 55 (111)
T 2kgr_A 6 WAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWN 55 (111)
T ss_dssp SSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56788889999999853 4577777777766666777777776664
No 272
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=22.54 E-value=1.6e+02 Score=18.84 Aligned_cols=45 Identities=22% Similarity=0.413 Sum_probs=33.1
Q ss_pred ccCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHhCCC--ccchhhhhh
Q psy16514 19 AVFSDLQRKGLEKRFQ-----IQKYISKPDRKKLAEKLGLK--DSQVKIWFQ 63 (155)
Q Consensus 19 ~~~t~~ql~~L~~~F~-----~~~~p~~~~~~~LA~~l~l~--~~~V~~WFq 63 (155)
..++..++..|...|. .+.+.+..+...+...+|+. ...|...|.
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 61 (156)
T 1wdc_B 10 TKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLK 61 (156)
T ss_dssp --CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHSSCCCHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 5689999999999985 35688888888888888754 445666664
No 273
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=22.50 E-value=1.7e+02 Score=19.28 Aligned_cols=41 Identities=10% Similarity=-0.070 Sum_probs=29.5
Q ss_pred CcccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccc
Q psy16514 17 RRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQ 57 (155)
Q Consensus 17 ~R~~~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~ 57 (155)
.+..++.+++..|...+.....+.......|+..+||-...
T Consensus 3 ~~~~lt~~e~~~l~~~~~~~~~~~~~~~~~l~~~tG~R~~E 43 (170)
T 1aih_A 3 ELAFLYERDIYRLLAECDNSRNPDLGLIVRICLATGARWSE 43 (170)
T ss_dssp CCCCCCHHHHHHHHHHHTTSSSTTHHHHHHHHHHHCCCHHH
T ss_pred ccccCCHHHHHHHHHHHhcccchhHHHHHHHHHHhCCcHHH
Confidence 34678999999999888766655555566677777765443
No 274
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=22.46 E-value=38 Score=23.20 Aligned_cols=42 Identities=14% Similarity=0.309 Sum_probs=32.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+.+....|....|-.. ....||...|++...+...|.|+-.=
T Consensus 17 l~aA~~lf~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~L 58 (216)
T 3f0c_A 17 INAAQKRFAHYGLCKT-TMNEIASDVGMGKASLYYYFPDKETL 58 (216)
T ss_dssp HHHHHHHHHHHCSSSC-CHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCCCcC-CHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 5555666888877553 46778999999999999999997653
No 275
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=22.42 E-value=38 Score=22.62 Aligned_cols=43 Identities=9% Similarity=0.014 Sum_probs=32.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
+.+....|....|-. .....||...|++...|..+|.++-.=.
T Consensus 14 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L~ 56 (183)
T 1zk8_A 14 VETAAEIADANGVQE-VTLASLAQTLGVRSPSLYNHVKGLQDVR 56 (183)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTSCHHHHTTTCSSHHHHH
T ss_pred HHHHHHHHHhcCccc-cCHHHHHHHcCCCchHHHHHcCCHHHHH
Confidence 555666677776554 4567789999999999999999876543
No 276
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=22.39 E-value=34 Score=22.14 Aligned_cols=23 Identities=4% Similarity=0.095 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCccchhhhhhhhH
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQNRR 66 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqNrR 66 (155)
...||..+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~is~~E~g~~ 50 (126)
T 3ivp_A 28 REQVGAMIEIDPRYLTNIENKGQ 50 (126)
T ss_dssp HHHHHHHHTCCHHHHHHHHHSCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 56899999999999999998874
No 277
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=22.31 E-value=33 Score=21.93 Aligned_cols=24 Identities=25% Similarity=0.327 Sum_probs=20.7
Q ss_pred HHHHHHHHhCCCccchhhhhhhhH
Q psy16514 43 DRKKLAEKLGLKDSQVKIWFQNRR 66 (155)
Q Consensus 43 ~~~~LA~~l~l~~~~V~~WFqNrR 66 (155)
....||..+|++...|..|-.+++
T Consensus 36 tq~elA~~~gis~~~is~~E~G~~ 59 (114)
T 3vk0_A 36 SQEELARQCGLDRTYVSAVERKRW 59 (114)
T ss_dssp CHHHHHHHHTCCHHHHHHHTTTCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 356899999999999999998875
No 278
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=22.24 E-value=35 Score=21.54 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.0
Q ss_pred HHHHHHHHhCCCccchhhhhhhhH
Q psy16514 43 DRKKLAEKLGLKDSQVKIWFQNRR 66 (155)
Q Consensus 43 ~~~~LA~~l~l~~~~V~~WFqNrR 66 (155)
....||..+|++...|..|..+++
T Consensus 26 sq~~lA~~~gis~~~is~~e~g~~ 49 (113)
T 2eby_A 26 KINELAELLHVHRNSVSALINNNR 49 (113)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 356789999999999999988765
No 279
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=22.23 E-value=36 Score=20.53 Aligned_cols=23 Identities=30% Similarity=0.234 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCccchhhhhhhhH
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQNRR 66 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqNrR 66 (155)
...||..+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~E~G~~ 52 (86)
T 3eus_A 30 QADLAERLDKPQSFVAKVETRER 52 (86)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 46799999999999999998765
No 280
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=22.15 E-value=35 Score=23.16 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=32.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+.+....|....|-. .....||...|++...|..+|.++-.=
T Consensus 13 l~aA~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L 54 (195)
T 2dg7_A 13 KRAALELYSEHGYDN-VTVTDIAERAGLTRRSYFRYFPDKREV 54 (195)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHTTCCHHHHHHHCSSTTGG
T ss_pred HHHHHHHHHhcCccc-cCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 555566687777654 456788999999999999999987653
No 281
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=22.04 E-value=27 Score=22.39 Aligned_cols=26 Identities=15% Similarity=0.209 Sum_probs=21.0
Q ss_pred HHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 43 DRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 43 ~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
-+..|+.+.|+...+.+.+|..+-.+
T Consensus 47 LK~~I~~k~Gip~~qQrLif~Gk~Lk 72 (93)
T 3plu_A 47 FKKVLSLQIGTQPNKIVLQKGGSVLK 72 (93)
T ss_dssp HHHHHHHHHTCCGGGEEEEETTEECC
T ss_pred HHHHHHHHhCCCHHHEEEEeCCEEcc
Confidence 35668999999999999999876544
No 282
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=21.98 E-value=22 Score=22.97 Aligned_cols=46 Identities=17% Similarity=0.188 Sum_probs=34.9
Q ss_pred cccCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCCccchhhhhh
Q psy16514 18 RAVFSDLQRKGLEKRFQI-----QKYISKPDRKKLAEKLGLKDSQVKIWFQ 63 (155)
Q Consensus 18 R~~~t~~ql~~L~~~F~~-----~~~p~~~~~~~LA~~l~l~~~~V~~WFq 63 (155)
...++..+...+...|.. +.+.+..+...+...+|++...|..+|.
T Consensus 13 ~~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~~~el~~i~~ 63 (110)
T 1iq3_A 13 PWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWE 63 (110)
T ss_dssp SCCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 356778888888888853 4677777777777777888888887774
No 283
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=21.88 E-value=37 Score=21.29 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCccchhhhhhhhH
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQNRR 66 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqNrR 66 (155)
...||..+|++...|..|-.+++
T Consensus 44 q~elA~~~gis~~~is~iE~G~~ 66 (99)
T 3g5g_A 44 QEDLAYKSNLDRTYISGIERNSR 66 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 56899999999999999998764
No 284
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=21.77 E-value=47 Score=22.25 Aligned_cols=42 Identities=17% Similarity=0.251 Sum_probs=29.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+.+....|....|- ......||...|++...+..+|.++-.=
T Consensus 20 l~aA~~l~~~~G~~-~~t~~~IA~~agvs~~t~Y~~F~sK~~L 61 (191)
T 4aci_A 20 LEGARRCFAEHGYE-GATVRRLEEATGKSRGAIFHHFGDKENL 61 (191)
T ss_dssp HHHHHHHHHHHHHH-HCCHHHHHHHHTCCHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHHhCcc-cCCHHHHHHHHCCCchHHHHHCCCHHHH
Confidence 34444456555433 2346788999999999999999987653
No 285
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=21.74 E-value=48 Score=22.12 Aligned_cols=43 Identities=9% Similarity=0.148 Sum_probs=32.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
+.+-...|....|-.. ....||...|++...+...|.++-.=.
T Consensus 8 l~aA~~lf~~~Gy~~~-s~~~Ia~~agvskgtlY~~F~sKe~L~ 50 (179)
T 2eh3_A 8 LEVSKELFFEKGYQGT-SVEEIVKRANLSKGAFYFHFKSKEELI 50 (179)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCCccC-CHHHHHHHhCCCcHHHHHHcCCHHHHH
Confidence 4455566888777653 467789999999999999999876543
No 286
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=21.69 E-value=45 Score=22.78 Aligned_cols=42 Identities=5% Similarity=0.112 Sum_probs=32.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+.+....|....|-. .....||...|++...+...|.|+-.=
T Consensus 15 l~aA~~lf~~~G~~~-~t~~~Ia~~Agvs~gt~Y~yF~sKe~L 56 (204)
T 3anp_C 15 FRAAMELFRNRGFQE-TTATEIAKAAHVSRGTFFNYYPYKEAV 56 (204)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHHHHCSSTHHH
T ss_pred HHHHHHHHHHcCccc-ccHHHHHHHcCCchHHHHHHcCCHHHH
Confidence 455566688887765 357788999999999999999987653
No 287
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=21.67 E-value=34 Score=23.05 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=32.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
+.+....|....|-. .....||...|++...+..+|.|+-.=.
T Consensus 14 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L~ 56 (206)
T 3dew_A 14 MEVATELFAQKGFYG-VSIRELAQAAGASISMISYHFGGKEGLY 56 (206)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHhcCCccc-CcHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 455556677766543 4567789999999999999999876543
No 288
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=21.59 E-value=35 Score=21.69 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCccchhhhhhhhH
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQNRR 66 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFqNrR 66 (155)
...||..+|++...|..|..+++
T Consensus 52 q~elA~~~gis~~~is~~E~G~~ 74 (107)
T 2jvl_A 52 QAELGKEIGETAATVASYERGTA 74 (107)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999998765
No 289
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=21.56 E-value=40 Score=23.12 Aligned_cols=42 Identities=12% Similarity=0.144 Sum_probs=32.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+..-...|....|-.. ....||...|++...|..+|.|+-.=
T Consensus 17 l~aA~~lf~~~G~~~~-s~~~IA~~agvs~~t~Y~~F~sK~~L 58 (212)
T 2ras_A 17 VDVAQAIVEERGGAGL-TLSELAARAGISQANLSRYFETREDL 58 (212)
T ss_dssp HHHHHHHHHHHTSSCC-CHHHHHHHHTSCHHHHTTTCSSHHHH
T ss_pred HHHHHHHHHHhCcccC-cHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 4455566887777654 56778999999999999999997653
No 290
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=21.50 E-value=99 Score=19.57 Aligned_cols=40 Identities=5% Similarity=0.160 Sum_probs=27.5
Q ss_pred ccCCHHH-HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhh
Q psy16514 19 AVFSDLQ-RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQ 63 (155)
Q Consensus 19 ~~~t~~q-l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFq 63 (155)
..++... +.++...+.-. ....++|...+|+..+|..|-.
T Consensus 31 rrWs~~~Kl~VV~~~~~g~-----~s~~e~arry~Is~s~i~~W~r 71 (95)
T 2jrt_A 31 RRWVASRKAAVVKAVIHGL-----ITEREALDRYSLSEEEFALWRS 71 (95)
T ss_dssp CCCCHHHHHHHHHHHHTTS-----SCHHHHHHHTTCCHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHcCC-----CCHHHHHHHhCCCHHHHHHHHH
Confidence 4466766 44454444322 2466889999999999999974
No 291
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=21.41 E-value=43 Score=22.62 Aligned_cols=43 Identities=14% Similarity=0.192 Sum_probs=33.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
+.+....|....|-. .....||...|++...+...|.|+-.=.
T Consensus 17 l~aA~~lf~~~G~~~-~s~~~Ia~~agvs~~t~Y~~F~sK~~L~ 59 (203)
T 3b81_A 17 ANKIWDIFIANGYEN-TTLAFIINKLGISKGALYHYFSSKEECA 59 (203)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHcCccc-CcHHHHHHHhCCCchhHHHHcCCHHHHH
Confidence 555566688877665 4567789999999999999999976533
No 292
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=21.37 E-value=33 Score=23.81 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=32.5
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+.+....|....|-. .....||...|++...|..+|.|+-.=
T Consensus 14 l~aA~~lf~~~Gy~~-~s~~~IA~~AGvs~gt~Y~yF~sKe~L 55 (206)
T 1vi0_A 14 IDAAVEVIAENGYHQ-SQVSKIAKQAGVADGTIYLYFKNKEDI 55 (206)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHhCccc-CCHHHHHHHhCCChhHHHHHcCCHHHH
Confidence 555566687777654 346778999999999999999997653
No 293
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=21.33 E-value=42 Score=22.17 Aligned_cols=44 Identities=7% Similarity=0.086 Sum_probs=33.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~r 70 (155)
+.+....|....|-. .....||...|++...+...|.++-.=..
T Consensus 18 l~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~ 61 (177)
T 3kkc_A 18 YNAFISLLQENDYSK-ITVQDVIGLANVGRSTFYSHYESKEVLLK 61 (177)
T ss_dssp HHHHHHHTTTSCTTT-CCHHHHHHHHCCCHHHHTTTCSSTHHHHH
T ss_pred HHHHHHHHHhCChhH-hhHHHHHHHhCCcHhhHHHHcCCHHHHHH
Confidence 555666677776654 45677899999999999999998765443
No 294
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=21.31 E-value=63 Score=23.39 Aligned_cols=44 Identities=11% Similarity=0.013 Sum_probs=32.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHh
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~r 70 (155)
+..-...|....|-. .....||..+|++...+...|.||-.=..
T Consensus 12 l~AA~~l~~~~G~~~-~S~r~IA~~aGvs~~tlY~hF~~K~~Ll~ 55 (234)
T 2opt_A 12 VVTALGILDAEGLDA-LSMRRLAQELKTGHASLYAHVGNRDELLD 55 (234)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHHHhCCccc-cCHHHHHHHHCCChhHHHHHcCCHHHHHH
Confidence 455555676666543 45778899999999999999998765443
No 295
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=21.24 E-value=51 Score=22.46 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=31.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRM 67 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~ 67 (155)
+.+....|....|-. .....||...|++...|...|.++-.
T Consensus 25 l~aA~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~~ 65 (216)
T 3qqa_A 25 KAVALELFLTKGYQE-TSLSDIIKLSGGSYSNIYDGFKSKEG 65 (216)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHHTTSCCSSSCSCCSHHH
T ss_pred HHHHHHHHHHcChhh-CCHHHHHHHhCCCHHHHHHhcCCHHH
Confidence 455556687777665 34677899999999999999998764
No 296
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=21.22 E-value=40 Score=22.97 Aligned_cols=42 Identities=14% Similarity=0.074 Sum_probs=32.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+.+....|....|-. .....||...|++...+..+|.|+-.=
T Consensus 14 l~aA~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~~L 55 (199)
T 2o7t_A 14 ITTTCNLYRTHHHDS-LTMENIAEQAGVGVATLYRNFPDRFTL 55 (199)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHCCCcc-CCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 455556677776654 457778999999999999999987653
No 297
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=21.12 E-value=47 Score=22.37 Aligned_cols=42 Identities=12% Similarity=0.064 Sum_probs=32.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+..-...|....|-. .....||...|++...|...|.+|..=
T Consensus 13 l~aA~~lf~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~sKe~L 54 (178)
T 4hku_A 13 LNMAEKIIYEKGMEK-TTLYDIASNLNVTHAALYKHYRNKEDL 54 (178)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHTTSCGGGGGGTCSSHHHH
T ss_pred HHHHHHHHHHhCccc-ccHHHHHHHhCcCHhHHHHHCCCHHHH
Confidence 455566687777643 457788999999999999999997654
No 298
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=21.12 E-value=50 Score=22.44 Aligned_cols=41 Identities=5% Similarity=0.118 Sum_probs=32.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRM 67 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~ 67 (155)
+.+....|....|-. .....||...|++...|...|.|+-.
T Consensus 20 l~aa~~l~~~~G~~~-~ti~~IA~~agvs~~t~Y~~F~sK~~ 60 (212)
T 3knw_A 20 LDSGFHLVLRKGFVG-VGLQEILKTSGVPKGSFYHYFESKEA 60 (212)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCCcc-CCHHHHHHHhCCChHHHHHHCCCHHH
Confidence 455566687777655 45677899999999999999998766
No 299
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=21.03 E-value=42 Score=23.04 Aligned_cols=45 Identities=9% Similarity=0.134 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRN 71 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk 71 (155)
+.+-...|....|-. .....||...|++...|..+|.||-.=...
T Consensus 15 l~aA~~lf~~~G~~~-~s~~~IA~~aGvsk~tlY~~F~sKe~L~~a 59 (203)
T 3cdl_A 15 VQAAIAEFGDRGFEI-TSMDRIAARAEVSKRTVYNHFPSKEELFAE 59 (203)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHTTSCHHHHHTTSSSHHHHHHH
T ss_pred HHHHHHHHHHcCchh-cCHHHHHHHhCCCHHHHHHHCCCHHHHHHH
Confidence 444555688877765 346778999999999999999987765443
No 300
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=20.81 E-value=37 Score=20.33 Aligned_cols=22 Identities=9% Similarity=0.199 Sum_probs=19.1
Q ss_pred HHHHHHHHhCCCccchhhhhhh
Q psy16514 43 DRKKLAEKLGLKDSQVKIWFQN 64 (155)
Q Consensus 43 ~~~~LA~~l~l~~~~V~~WFqN 64 (155)
....||..+|++...|..|..+
T Consensus 24 T~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 24 SLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp CHHHHHHHHSSCHHHHHHTTTS
T ss_pred CHHHHHHHHCcCHHHHHHHHcC
Confidence 3567999999999999999875
No 301
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=20.69 E-value=53 Score=22.37 Aligned_cols=42 Identities=7% Similarity=0.159 Sum_probs=32.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+.+-...|....|-.. ....||...|++...|...|.||..=
T Consensus 16 l~aA~~lf~~~G~~~~-s~~~IA~~aGvs~gtlY~yF~sKe~L 57 (194)
T 2nx4_A 16 TAAAWRLIAARGIEAA-NMRDIATEAGYTNGALSHYFAGKDEI 57 (194)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHhcCcccC-CHHHHHHHhCCCcchHHHhCcCHHHH
Confidence 4444555888887654 46678999999999999999997654
No 302
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=20.66 E-value=1.4e+02 Score=17.57 Aligned_cols=57 Identities=14% Similarity=0.054 Sum_probs=36.2
Q ss_pred CCCcccCCHHH-HHHHHHHHhhc-CCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q psy16514 15 MMRRAVFSDLQ-RKGLEKRFQIQ-KYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRN 71 (155)
Q Consensus 15 ~r~R~~~t~~q-l~~L~~~F~~~-~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk 71 (155)
+++|-+.|++. ...+.++.... ..-.+..+.++-..-||+..+|+.=.|.-|.+.+|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 44567778765 34444444443 22234455555555688999999999988877765
No 303
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=20.65 E-value=52 Score=22.35 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=32.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k 68 (155)
+.+....|....|-. .....||...|++...+..+|.++-.=
T Consensus 20 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L 61 (220)
T 3lhq_A 20 LDVALRLFSQQGVSA-TSLAEIANAAGVTRGAIYWHFKNKSDL 61 (220)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCceeehhhcCCHHHH
Confidence 455566677777654 456778999999999999999987653
No 304
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=20.39 E-value=45 Score=22.90 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=32.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
+.+-...|....|-. .....||...|++...|..+|.|+..=.
T Consensus 18 l~aA~~lf~~~Gy~~-ts~~~IA~~agvs~gtlY~yF~sKe~L~ 60 (205)
T 1rkt_A 18 LEAAKTVFKRKGFEL-TTMKDVVEESGFSRGGVYLYFSSTEEMF 60 (205)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTSCHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHHCCCcchhhhhCCCHHHHH
Confidence 444555688887765 4567789999999999999999876533
No 305
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=20.35 E-value=45 Score=22.87 Aligned_cols=43 Identities=9% Similarity=0.247 Sum_probs=33.4
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 69 (155)
+.+-...|....|-.. ....||...|++...|..+|.||-.=.
T Consensus 20 l~aA~~lf~~~G~~~~-s~~~IA~~agvsk~tlY~yF~sKe~L~ 62 (199)
T 3crj_A 20 MQATYRALREHGYADL-TIQRIADEYGKSTAAVHYYYDTKDDLL 62 (199)
T ss_dssp HHHHHHHHHHHTTTTC-CHHHHHHHHTSCHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHhCCChhHHhhhcCCHHHHH
Confidence 4555566888887654 467789999999999999999876543
No 306
>1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=20.34 E-value=53 Score=21.84 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHhCCCccchhhhhhh
Q psy16514 38 YISKPDRKKLAEKLGLKDSQVKIWFQN 64 (155)
Q Consensus 38 ~p~~~~~~~LA~~l~l~~~~V~~WFqN 64 (155)
.+++.+...|...+..+.+.|+.|++.
T Consensus 7 ~lspe~l~~L~~~t~fs~~elk~~y~~ 33 (118)
T 1tuz_A 7 LISPSDFAQLQKYMEYSTKKVSDVLKL 33 (118)
T ss_dssp CSCHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred cCCHHHHHHHHHHcccCHHHHHHHHHH
Confidence 345666777777788889999999754
No 307
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=20.21 E-value=57 Score=20.96 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=17.1
Q ss_pred HHHHHHHhCCCccchhhhhh
Q psy16514 44 RKKLAEKLGLKDSQVKIWFQ 63 (155)
Q Consensus 44 ~~~LA~~l~l~~~~V~~WFq 63 (155)
...+|..+|+++.+|-.|=.
T Consensus 26 q~~vA~~iGV~~StISR~k~ 45 (97)
T 1xwr_A 26 TEKTAEAVGVDKSQISRWKR 45 (97)
T ss_dssp HHHHHHHHTCCTTTHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHh
Confidence 56789999999999999744
No 308
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=20.20 E-value=41 Score=22.44 Aligned_cols=41 Identities=10% Similarity=0.168 Sum_probs=31.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHH
Q psy16514 26 RKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRM 67 (155)
Q Consensus 26 l~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~ 67 (155)
+.+....|....|-. .....||...|++...+..+|.++-.
T Consensus 14 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~ 54 (194)
T 2g7s_A 14 LQCARTLIIRGGYNS-FSYADISQVVGIRNASIHHHFPSKSD 54 (194)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHCCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCchHHHHHcCCHHH
Confidence 445555677776644 45778899999999999999998765
No 309
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=20.14 E-value=1.1e+02 Score=17.75 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHh-----hcCCCCHHHHHHHHHHhCC--Cccchhhhhh
Q psy16514 23 DLQRKGLEKRFQ-----IQKYISKPDRKKLAEKLGL--KDSQVKIWFQ 63 (155)
Q Consensus 23 ~~ql~~L~~~F~-----~~~~p~~~~~~~LA~~l~l--~~~~V~~WFq 63 (155)
..+...|...|. .+.+.+..+...+...+|. +...|..+|.
T Consensus 5 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 52 (92)
T 2kn2_A 5 TDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIK 52 (92)
T ss_dssp CHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 445666666663 2457777777777777773 4455555553
No 310
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=20.12 E-value=39 Score=19.92 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=18.5
Q ss_pred HHHHHHHHhCCCccchhhhhhh
Q psy16514 43 DRKKLAEKLGLKDSQVKIWFQN 64 (155)
Q Consensus 43 ~~~~LA~~l~l~~~~V~~WFqN 64 (155)
....||..||++..-|..|...
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~~ 36 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLKR 36 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHHh
Confidence 4667899999999999999843
No 311
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=20.01 E-value=70 Score=25.83 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCccchhhhhhhhHHHHhh
Q psy16514 21 FSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRN 71 (155)
Q Consensus 21 ~t~~ql~~L~~~F~~~~~p~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~rk 71 (155)
+++.+..+|...|-.... ......++|..+|++...|+.+....+.|.|+
T Consensus 361 L~~rer~Vl~lr~~L~~~-e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR~ 410 (423)
T 2a6h_F 361 LSEREAMVLKLRKGLIDG-REHTLEEVGAFFGVTRERIRQIENKALRKLKY 410 (423)
T ss_dssp SCHHHHHHHHHHHHTTCC------CHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHh
Confidence 556666666666642111 23466789999999999999999888877773
Done!