RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16514
(155 letters)
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 70.2 bits (172), Expect = 1e-17
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 18 RAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70
R ++ Q LEK F +Y+++ R ++A L L + Q+KIWFQNRRMKW+
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWK 53
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 69.4 bits (170), Expect = 3e-17
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 17 RRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSK 73
R F+ Q + LEK F+ Y R++LA K+ L ++++++WF NRR KWR +
Sbjct: 4 NRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 60
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 68.7 bits (168), Expect = 7e-17
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 10 KPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69
R +R ++ Q LEK F Y+++ R ++A L L + QVKIWFQNRRMK
Sbjct: 9 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKM 68
Query: 70 R 70
+
Sbjct: 69 K 69
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 67.2 bits (164), Expect = 1e-16
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 18 RAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68
R FS Q L++ F +Y+++ R++L+ +LGL ++Q+KIWFQN R K
Sbjct: 3 RTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 66.8 bits (163), Expect = 2e-16
Identities = 30/53 (56%), Positives = 39/53 (73%)
Query: 18 RAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70
+ FS+ Q LEK+F+ QKY+S P+RK+LA+ L L + QVK WFQNRR KWR
Sbjct: 4 QVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWR 56
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 66.4 bits (162), Expect = 4e-16
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 10 KPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69
K R R V ++ Q L + +++L E GL +++WFQN+R K
Sbjct: 2 KTTR---VRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKD 58
Query: 70 RNSK 73
+
Sbjct: 59 KKRS 62
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 64.9 bits (158), Expect = 1e-15
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 17 RRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70
+R +S Q + LE+ + K+I+K R+K++ L + Q+ IWFQNRR+K +
Sbjct: 4 KRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEK 57
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 65.8 bits (160), Expect = 1e-15
Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 10 KPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69
P R F+ Q LEK F KY+S+ R ++A L L ++QVKIWFQNRRMK
Sbjct: 26 SPSG---LRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQ 82
Query: 70 RNSKERE 76
+ +ERE
Sbjct: 83 KK-RERE 88
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 64.5 bits (157), Expect = 1e-15
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 17 RRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70
R F+ Q LEK F + Y+S+P R +LA +L L +S +K+WFQNRRMK +
Sbjct: 2 YRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDK 55
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 63.8 bits (155), Expect = 3e-15
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 17 RRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSK 73
RR S + LE+ F S + ++AE+L L+ V++WF NRR + + K
Sbjct: 2 RRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK 58
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 64.3 bits (156), Expect = 3e-15
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 9 GKPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68
G P + RR +F+ Q LE+RF+ Q+Y+S P+R+ LA + L +QVKIWFQN R K
Sbjct: 4 GLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYK 63
Query: 69 WRNSKERE 76
+ ++ +
Sbjct: 64 TKRAQNEK 71
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 63.8 bits (155), Expect = 3e-15
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 11 PRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70
PRR R F+ Q LE+ F +Y++ P L+ KL L +QVKIWF+NRR + +
Sbjct: 1 PRR---TRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHK 57
Query: 71 NSKERE 76
++
Sbjct: 58 IQSDQH 63
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 63.4 bits (154), Expect = 3e-15
Identities = 15/53 (28%), Positives = 35/53 (66%)
Query: 18 RAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70
++ S R LE+ F+ ++ ++ +++++A+K G+ QV++WF N+RM+ +
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 63.8 bits (155), Expect = 3e-15
Identities = 28/60 (46%), Positives = 39/60 (65%)
Query: 17 RRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSKERE 76
RR +FS Q LE+RF+ QKY+S P+R+ LA + L +QVKIWFQN R K + + +
Sbjct: 5 RRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDK 64
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 63.8 bits (155), Expect = 4e-15
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 10 KPRRGMMRRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69
K RR R FS Q LE+ F+ +Y R++LA++ L ++++++WFQNRR +
Sbjct: 1 KQRR---SRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARL 57
Query: 70 R 70
R
Sbjct: 58 R 58
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 63.4 bits (154), Expect = 4e-15
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 17 RRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70
R F+ Q LE++F+ ++Y+S +R + + L L ++QVKIWFQNRR K +
Sbjct: 3 PRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAK 56
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 63.0 bits (153), Expect = 6e-15
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 18 RAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRR 66
R VF+D+QR+ L F+ K SK + ++++LGL+ S V +F N R
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 61.9 bits (150), Expect = 2e-14
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 17 RRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70
+R F+ Q + LE FQ +Y R+++A L +++V++WF+NRR KWR
Sbjct: 4 QRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWR 57
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 60.1 bits (146), Expect = 6e-14
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 29 LEKRFQIQ-KYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72
LEK F K+ + + L+++L ++ WF+ RR + + S
Sbjct: 8 LEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 52
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 59.6 bits (144), Expect = 1e-13
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 17 RRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70
+R R LEK F + + D +AE+L ++ +++WF NRR K +
Sbjct: 1 KRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEK 54
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 59.4 bits (144), Expect = 1e-13
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 14 GMMRRAVFSDLQRKGLEKRFQIQ-KYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWR 70
G+ V LEK F KY + K L+++L +++ WF++RR + +
Sbjct: 1 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 59.4 bits (144), Expect = 1e-13
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 17 RRAVFSDLQRKGLEKRFQIQK---YISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72
R F+ + LE F Y+ + L + L Q+K W NRR K +
Sbjct: 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 59.2 bits (143), Expect = 2e-13
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 17 RRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNS 72
+R + R LE F S +A +LGL+ V++WF NRR K + S
Sbjct: 11 KRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKRS 66
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 57.8 bits (139), Expect = 1e-12
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 15/69 (21%)
Query: 17 RRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKL---------------GLKDSQVKIW 61
R + +E F +Y + R+++A + +V W
Sbjct: 3 SRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNW 62
Query: 62 FQNRRMKWR 70
F NRR + +
Sbjct: 63 FANRRKEIK 71
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 56.9 bits (137), Expect = 2e-12
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 18 RAVFSDLQRKGLEKRFQI-QKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSK 73
A ++ Q + LE F K+ +A + GL + Q + WF+ R +WR S+
Sbjct: 5 AATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 56.3 bits (136), Expect = 3e-12
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 17 RRAVFSDLQRKGLEKRFQIQK---YISKPDRKKLAEKLGLKDSQVKIWFQNRRMK 68
+R V + Y ++ ++K++A + L QV WF N R +
Sbjct: 5 KRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRR 59
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 55.7 bits (134), Expect = 5e-12
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 17 RRAVFSDLQRKGLEKRF---QIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSK 73
+R F+ + L + F Y S+ +++LA+K G+ SQV WF N+R++++ +
Sbjct: 4 KRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63
Query: 74 ERE 76
+
Sbjct: 64 GKF 66
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 54.3 bits (130), Expect = 2e-11
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 11 PRRGMMRRAVFSDLQRKGLEKRFQ-IQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKW 69
G R S L+ + Y + L+ +L L + +FQN+R
Sbjct: 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63
Query: 70 RNS 72
++S
Sbjct: 64 KHS 66
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 52.9 bits (126), Expect = 9e-11
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 21/78 (26%)
Query: 18 RAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKL---------------------GLKDS 56
R + ++ L + ++ QK SK +R+ L E+ + +
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 57 QVKIWFQNRRMKWRNSKE 74
+V WF NRR + +
Sbjct: 61 RVYNWFANRRKEEAFRHK 78
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 52.4 bits (125), Expect = 1e-10
Identities = 8/67 (11%), Positives = 25/67 (37%)
Query: 17 RRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSKERE 76
+ + Q + L+ F ++ + +L + L ++ WF ++ +E+
Sbjct: 7 KFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKM 66
Query: 77 LLANGGS 83
+ +
Sbjct: 67 EIDESNA 73
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 50.8 bits (121), Expect = 5e-10
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 7 DRGKPRRGMMRRAVFSDLQRKGLEKRFQIQ-KYISKPD---RKKLAEKLGLKDSQVKIWF 62
R F+ Q++ + + I K D ++ + G++ +KIW
Sbjct: 10 PSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWM 69
Query: 63 QNRRMKWRNS 72
N + +S
Sbjct: 70 HNNKNSGPSS 79
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 45.1 bits (106), Expect = 7e-08
Identities = 11/59 (18%), Positives = 25/59 (42%)
Query: 17 RRAVFSDLQRKGLEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSKER 75
+ Q L+ F ++ + D +KL + GL ++ WF + R ++ + +
Sbjct: 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64
>d1r4xa1 b.1.10.3 (A:600-762) Coatomer gamma subunit C-terminal
domain, first subdomain {Human (Homo sapiens) [TaxId:
9606]}
Length = 163
Score = 24.4 bits (53), Expect = 5.4
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 131 KFT--DNEAESSEVEDDGDDDE 150
KFT D + + E +D+G +DE
Sbjct: 130 KFTVKDCDPTTGETDDEGYEDE 151
>d1doia_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcula
marismortui [TaxId: 2238]}
Length = 128
Score = 24.1 bits (52), Expect = 6.1
Identities = 7/23 (30%), Positives = 9/23 (39%), Gaps = 2/23 (8%)
Query: 103 CDRPKIDLSNVNIDYDEEEEDDL 125
P D V I Y+ + D L
Sbjct: 103 IGSPDADE--VKIVYNAKHLDYL 123
>d1ngra_ a.77.1.2 (A:) p75 low affinity neurotrophin receptor {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 85
Score = 23.3 bits (50), Expect = 8.1
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 29 LEKRFQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSKERELLANGGSRE 85
L KR +++K ++ + LA +LG + + R LLA+ G+++
Sbjct: 9 LTKREEVEKLLNGDTWRHLAGELGYQPEHI------DSFTHEACPVRALLASWGAQD 59
>d3ck2a1 d.159.1.7 (A:1-173) Uncharacterized protein SP1879
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 173
Score = 23.9 bits (51), Expect = 8.6
Identities = 9/90 (10%), Positives = 26/90 (28%), Gaps = 3/90 (3%)
Query: 33 FQIQKYISKPDRKKLAEKLGLKDSQVKIWFQNRRMKWRNSKERELLANGGSREQTLPNKN 92
+ + +KL +++ + ++ + L N GS + P
Sbjct: 80 THGHLFDINFNFQKLDYWAQEEEAAICLYGHLHVPSAWLEGKI-LFLNPGS--ISQPRGT 136
Query: 93 NPNPDLSDADCDRPKIDLSNVNIDYDEEEE 122
+ + D + + D++
Sbjct: 137 IRECLYARVEIDDSYFKVDFLTRDHEVYPG 166
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.131 0.373
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 601,234
Number of extensions: 27424
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 46
Length of query: 155
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,336,656
Effective search space: 102922512
Effective search space used: 102922512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (22.8 bits)