Query psy16515
Match_columns 570
No_of_seqs 225 out of 731
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 23:17:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01130 CD36: CD36 family; I 100.0 8E-104 2E-108 860.9 28.8 408 74-523 18-467 (467)
2 KOG3776|consensus 100.0 8E-102 2E-106 841.1 27.3 425 70-537 25-485 (507)
3 PF11271 DUF3068: Protein of u 97.2 0.00059 1.3E-08 71.5 7.0 41 287-329 142-182 (301)
4 KOG3776|consensus 97.1 0.00026 5.6E-09 78.9 2.2 60 419-480 156-216 (507)
5 PF01130 CD36: CD36 family; I 96.2 0.0023 5E-08 70.9 2.3 57 420-478 147-208 (467)
6 PLN00218 predicted protein; Pr 85.3 0.79 1.7E-05 41.0 3.0 17 25-41 7-23 (151)
7 PF15345 TMEM51: Transmembrane 54.4 2.9 6.4E-05 42.3 -1.0 27 503-529 61-87 (233)
8 PF12273 RCR: Chitin synthesis 44.5 11 0.00025 34.5 1.2 24 505-528 6-29 (130)
9 PF01102 Glycophorin_A: Glycop 44.5 12 0.00027 34.4 1.5 23 507-529 73-95 (122)
10 TIGR01167 LPXTG_anchor LPXTG-m 42.6 13 0.00029 25.7 1.1 22 504-525 11-32 (34)
11 PF01034 Syndecan: Syndecan do 36.7 13 0.00028 30.5 0.3 15 504-518 15-29 (64)
12 PF01299 Lamp: Lysosome-associ 31.8 47 0.001 34.9 3.6 24 505-528 278-301 (306)
13 TIGR02205 septum_zipA cell div 30.6 29 0.00064 36.5 1.8 29 503-531 3-32 (284)
14 PF00746 Gram_pos_anchor: Gram 27.8 20 0.00043 25.8 0.0 30 495-524 9-38 (39)
15 PRK03427 cell division protein 24.8 62 0.0013 34.8 3.0 35 502-536 5-40 (333)
16 COG3115 ZipA Cell division pro 23.3 58 0.0013 34.4 2.4 31 503-533 5-36 (324)
17 PF04156 IncA: IncA protein; 22.9 1.1E+02 0.0024 29.5 4.1 28 498-525 37-64 (191)
18 TIGR00847 ccoS cytochrome oxid 22.1 46 0.00099 26.1 1.0 34 504-537 5-38 (51)
19 PF01708 Gemini_mov: Geminivir 21.5 60 0.0013 28.4 1.7 36 502-537 41-82 (91)
20 PF03597 CcoS: Cytochrome oxid 20.5 54 0.0012 25.0 1.1 34 504-537 4-37 (45)
No 1
>PF01130 CD36: CD36 family; InterPro: IPR002159 CD36 is a transmembrane, highly glycosylated, 88kDa glycoprotein expressed by monocytes, macrophages, platelets, microvascular endothelial cells and adipose tissues. Platelet glycoprotein IV (GP IV)(GPIIIb) (CD36 antigen) is also called GPIV, OKM5-antigen or PASIV. CD36 recognises oxidized low density lipoprotein, long chain fatty acids, anionic phospholipids, collagen types I, IV and V, thrombospondin (TSP) and Plasmodium falciparum infected erythrocytes. The recognition of apoptotic neutrophils is in co-operation with TSP and avb3. Other ligands may still be unknown. CD36 is a scavenger receptor for oxidized LDL and shed photoreceptor outer segments and in recognition and phagocytosis of apoptotic cells and is the cell adhesion molecule in platelet adhesion and aggregation, platelet-monocyte and platelet-tumor cell interaction []. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0007155 cell adhesion, 0016020 membrane
Probab=100.00 E-value=8.1e-104 Score=860.94 Aligned_cols=408 Identities=39% Similarity=0.754 Sum_probs=382.6
Q ss_pred ccccccCCccceeeeeeeccCcccccccccCCCcceEEEEEEEccChhhhhcCCCCCCeeeEeccEEEEeeeeeeeeEEC
Q psy16515 74 QIEPRLMPRFPLFQQLTLREGAQVFEMWRKPPVHPVIRIFIYNVTNADEFLSVPGTKPVLDEIGPYVYVQTWEKVDLSFL 153 (570)
Q Consensus 74 ~~~~~l~~~~~i~k~l~L~~gS~~y~~W~~pp~p~~~~~Y~FNvTNpee~l~g~g~KP~l~EvGPYvYrE~~~K~ni~f~ 153 (570)
.++|.++ +.+++|+++|++||.+|+.|++||+|++++||+|||||||||++| |+||+|+|+|||||||+++|+|++|+
T Consensus 18 ~~~~~~~-~~~i~~~~~L~~~s~~~~~W~~~p~p~~~~~y~fNvTNp~ev~~~-g~kP~~~EvGPY~y~e~~~k~nv~~~ 95 (467)
T PF01130_consen 18 VVFPSII-DSQIKKQLVLKPGSDSYDNWKKPPVPIYFKFYFFNVTNPEEVLNG-GAKPNVQEVGPYVYREYREKVNVTFN 95 (467)
T ss_pred hhhHHHH-HHHHHhCcEECCCChhHhhhhcCCCccEEEEEEEeccCHHHHhCc-CCCceEEEeCCEEEEeeeeeeeeEEc
Confidence 3467777 457999999999999999999999999999999999999999996 99999999999999999999999999
Q ss_pred CCC-eEEEeeeeeEEEcCCCCCC-CCCceEEeccccccccc---ccccccc--------------ceeeeeccccccccc
Q psy16515 154 PNG-SVTFNQRKVFRFDPDQSVG-SEDDVVIVPNIPMLTWE---KVDLSFL--------------PNGSVTFNQRKVFRF 214 (570)
Q Consensus 154 ~n~-tVsY~~~~~~~F~pe~S~g-~~~D~I~~pNi~~l~~~---k~~~~~l--------------~Fvt~Tv~elLF~~~ 214 (570)
+|+ ||+|+++++|+|+||+|++ +++|+||+||+++++++ ++.+.++ +|+++||+|+|
T Consensus 96 ~~~~tvsY~~~~~~~F~~~~S~~~~~~d~it~~N~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~fv~~tv~e~L---- 171 (467)
T PF01130_consen 96 DNGSTVSYRQKRTFFFDPELSCGCSEDDTITTPNIPLLGAASLVRNMSPFVKSLINLLLNSLGEKLFVTRTVRELL---- 171 (467)
T ss_pred CCCcEEEEEeeeeEEeccccCCCCCccceEEeccHHHhhhhhhhccccHHHHHHHHHhhhccCCcceEeccHHHhh----
Confidence 988 9999999999999999999 89999999999999998 3322221 99999999999
Q ss_pred CCCCCC-CCCccee---------ecCC-cC-------CCCCCCCCCeEEEecCCCCccccccEEeeCCCcCCCCCCCCCC
Q psy16515 215 DPDQSV-GSEDDVV---------IVPN-IP-------MLKNGTSKDNVTVFTGENGIMKFGLIDKYNGRDHLPHWKTDAC 276 (570)
Q Consensus 215 ~~~~~~-GY~DpLl---------~~p~-ip-------~~~N~T~~~~~ti~TG~~d~~~~g~I~~wnG~~~l~~W~~~~C 276 (570)
| ||+||++ +.|+ .+ .++|+|.+|.|+|+||++|++++|+|.+|||++++++|++++|
T Consensus 172 -----f~GY~dpll~~~~~~~~~~~~~~~~~~~fg~~~~~N~t~~~~~~v~TG~~d~~~~g~i~~~ng~~~l~~w~~~~c 246 (467)
T PF01130_consen 172 -----FDGYEDPLLSLAKKLLDFLRPDLIPFDKFGLFYGRNGTYDGVYTVNTGKDDISKVGQIDSWNGSTSLTYWNGEEC 246 (467)
T ss_pred -----hccCchHHHHHHhhhhhhcCCccCCCCccccccccCCCCceeEEEECCCCChhhhceeeEECCcccCCCcCCccc
Confidence 8 9999998 1222 11 6799999999999999999999999999999999999999999
Q ss_pred CceeCCCCCccCCCCCCCceEEEEeccccceeeeEEeeeeeeeCCeeEEEEecCccccccCCCCCCCCCCCCCCC----C
Q psy16515 277 NSLEGSDGSIFPPHIEKDRTLFVYDKDVCRLLPLVFDKEVETNGNVLGYRFTPSKDVFATVEENPANDCFCPSPP----C 352 (570)
Q Consensus 277 n~I~GTDG~~fpP~l~~~d~l~vF~~dlCRsl~l~y~~~~~~~~GI~~~ry~~~~~~f~n~~~~p~N~cfC~~~~----C 352 (570)
|+|+||||++|||+++++++|++|++|+||+++++|++++ +++||+++||++++++|++++.+|+|+|||+++. |
T Consensus 247 n~i~GtdG~~fpP~l~~~~~l~~f~~dlCRs~~l~y~~~~-~~~Gi~~~rf~~~~~~f~~~~~~~~n~c~C~~~~~~~~c 325 (467)
T PF01130_consen 247 NMINGTDGSFFPPFLTKDDTLYVFSSDLCRSLPLEYEEEV-TVKGIPAYRFVLPPNVFDNGSNNPENKCFCPKNSDECNC 325 (467)
T ss_pred cceeCCccCccCCCCCCCceEEEEehhcceeEEEEEecce-ecCCeEEEEEEEChhHhcCcCcCccccccCCCCCccccc
Confidence 9999999999999999999999999999999999999999 8999999999999999999999999999998753 9
Q ss_pred CCCcceeccCCCCCCceeecccccccCCccccccccccCCCCcccCceeEEEecccccchhHHHHH-HHHHhhccccccc
Q psy16515 353 APKGLFNVSLCQYDSPVMLSFPHFYLGNQSLLDAVEGVSKPDPEKHALFIDVQPSATSQSKHAARF-LRLAMASIMDILK 431 (570)
Q Consensus 353 ~p~Gl~nlS~C~~gaPi~~S~PHFy~aDp~l~~~VeGl~Pd~~ekH~tyidiEP~tG~~L~~~~Rl-INl~V~~~~~~~~ 431 (570)
+|+|++|+|+|++|+|+++|+||||+|||+++++|+||+|| +|+|++|+++||+||+||++++|+ +|+.|++...+..
T Consensus 326 ~p~G~~~ls~C~~g~Pi~~S~PHF~~adp~~~~~v~Gl~Pd-~~~H~~~~~iEP~tG~~l~~~~rlQ~N~~v~~~~~~~~ 404 (467)
T PF01130_consen 326 LPSGLLNLSPCQFGAPIFVSFPHFYNADPSLLEAVEGLNPD-PEKHETYIDIEPTTGIPLQAAKRLQINLLVRPTDGISI 404 (467)
T ss_pred CCcceEechhhcCCCCccccCcccccCChhhhhcCCCCCCC-cccceeEEEeecccCeeeeeeEeeeeeEEecCcccccc
Confidence 99999999999999999999999999999999999999999 899999999999999999999999 9999999988888
Q ss_pred ccccceeeeeeeeecccchhHHhhhhcCCCccCCCccccccccccCCCCCHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q psy16515 432 VKPFVEVTVGQLLWGYEDPLLKLAKDVVPKEQKLPYEEFGLLYGGIDGLPAEVTDLLRVATTAPASAKVVLLYILFTAGT 511 (570)
Q Consensus 432 ~~~f~~~tv~pllWGY~DpLl~la~~~~p~~~~~p~~~fG~f~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~ 511 (570)
.+.+.+..+ |++| .++ ++ ++++++++++|..+..++.++.++.|+++++|+
T Consensus 405 ~~~~~~~~~-Pl~W---------------------~~~------~~-~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~ 455 (467)
T PF01130_consen 405 YKNLPNVIF-PLFW---------------------FEE------GA-ELPDELADMLKKQLFILPKIQFILQIILIALGI 455 (467)
T ss_pred ccCCCcEEE-eeEE---------------------eee------ee-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887777 9999 887 76 599999999988899899999999999999999
Q ss_pred HHHHHHhheeee
Q psy16515 512 LLLITAVFCLIR 523 (570)
Q Consensus 512 ill~~~~~~~~~ 523 (570)
+++++++++++|
T Consensus 456 ~~l~~~i~~~~~ 467 (467)
T PF01130_consen 456 ILLLLSIVLFIR 467 (467)
T ss_pred HHHHHHHHheeC
Confidence 999999988875
No 2
>KOG3776|consensus
Probab=100.00 E-value=8.3e-102 Score=841.05 Aligned_cols=425 Identities=40% Similarity=0.761 Sum_probs=392.6
Q ss_pred hhccccccccCCccceeeeeeeccCcccccccccCCCcceEEEEEEEccChhhhhcCCCCCCeeeEeccEEEEeeeeeee
Q psy16515 70 LLPLQIEPRLMPRFPLFQQLTLREGAQVFEMWRKPPVHPVIRIFIYNVTNADEFLSVPGTKPVLDEIGPYVYVQTWEKVD 149 (570)
Q Consensus 70 ~~~~~~~~~l~~~~~i~k~l~L~~gS~~y~~W~~pp~p~~~~~Y~FNvTNpee~l~g~g~KP~l~EvGPYvYrE~~~K~n 149 (570)
++-..+++.++ +.++.++++|+|||.+++.|.+||++.++++|+|||||||||++| |+||+|+|+|||||+|.++|+|
T Consensus 25 ~~~~~~~~~i~-~~~v~~~~~L~~gs~~~~~W~~pp~~~~~~~yiFNvTNpde~~~~-~~kp~v~EvGPyvy~E~~~K~~ 102 (507)
T KOG3776|consen 25 IVIVVVFPDII-DSMVDKNVVLRPGSDAFESWLNPPYPIYLNFYIFNVTNPDEFLSG-GAKPNVQEVGPYVYREIEQKVN 102 (507)
T ss_pred heeeEeeHHHH-HHHHHhceeeCCCchhhhhhhcCCCccEEEEEEEecCCHHHhhCc-CCCCceEeeCCeEEEEEecccc
Confidence 33444555556 457999999999999999999999999999999999999999996 8999999999999999999999
Q ss_pred eEECCCCeEEEee-eeeEEEcCCCCCCCC-CceEEeccccccccc---ccccccc--------------ceeeeeccccc
Q psy16515 150 LSFLPNGSVTFNQ-RKVFRFDPDQSVGSE-DDVVIVPNIPMLTWE---KVDLSFL--------------PNGSVTFNQRK 210 (570)
Q Consensus 150 i~f~~n~tVsY~~-~~~~~F~pe~S~g~~-~D~I~~pNi~~l~~~---k~~~~~l--------------~Fvt~Tv~elL 210 (570)
++|++|+|++|.+ +|+|+|+|++|||++ +|.|++||+++++++ +... ++ +|+++||+|+|
T Consensus 103 ~~f~~n~tv~f~~~~k~~~F~p~~S~~~~~~d~I~~pN~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~f~~~tV~e~L 181 (507)
T KOG3776|consen 103 IDFNENNTVSFYQNRKTYVFNPEESVGDCKDDKITVPNIPALGAATSVKREQ-FLRLAISIALTILGEKPFVTVTVGELL 181 (507)
T ss_pred eeeccCCcEEEEeeccEEEechhhcCCCcCcCeEEecCchhhhhhhhhhhhH-HHHHHHHHHHHHhCCCcceEeeHHHHH
Confidence 9999999888777 999999999999987 799999999999998 2222 11 99999999999
Q ss_pred ccccCCCCCC-CCCccee-----ecC-C--cC-----CCCCCCCCCeEEEecCCCCccccccEEeeCCCcCCCCCCCCCC
Q psy16515 211 VFRFDPDQSV-GSEDDVV-----IVP-N--IP-----MLKNGTSKDNVTVFTGENGIMKFGLIDKYNGRDHLPHWKTDAC 276 (570)
Q Consensus 211 F~~~~~~~~~-GY~DpLl-----~~p-~--ip-----~~~N~T~~~~~ti~TG~~d~~~~g~I~~wnG~~~l~~W~~~~C 276 (570)
| ||+||++ ..| . .+ +++|||.+|.|+|+||++|++++|+|++|||+++++||.+++|
T Consensus 182 ---------f~GYeDpll~l~~~~~~~~~~~~r~G~~~~~Ngt~d~~y~V~tG~dd~~k~g~I~~wng~~~l~~W~~~~c 252 (507)
T KOG3776|consen 182 ---------FDGYEDPLLSLINRFVPIKPPSPRFGLFYGYNGTSDGVYTVNTGKDDISKFGQIDTWNGLTHLPWWETDEC 252 (507)
T ss_pred ---------HhhcccHHHHHHhhcCCcCCcccceeeecccCCCccccEEEecCCCCHHHCeeeeEECCcccCCccCcccc
Confidence 7 9999999 222 2 11 8999999999999999999999999999999999999999999
Q ss_pred CceeCCCCCccCCCCCCCceEEEEeccccceeeeEEeeeeeeeCCeeEEEEecCccccccCCCCCCCCCCCCC--CCCCC
Q psy16515 277 NSLEGSDGSIFPPHIEKDRTLFVYDKDVCRLLPLVFDKEVETNGNVLGYRFTPSKDVFATVEENPANDCFCPS--PPCAP 354 (570)
Q Consensus 277 n~I~GTDG~~fpP~l~~~d~l~vF~~dlCRsl~l~y~~~~~~~~GI~~~ry~~~~~~f~n~~~~p~N~cfC~~--~~C~p 354 (570)
++|+||||++|||+++++|++++|.+|+||+++++|++++ +++||++|||+++.+.||++..+|+|.|||.+ ++|+|
T Consensus 253 ~~I~Gtdgs~FpP~l~k~d~l~if~~~~CRsi~l~y~~~~-~~~Gi~~~rf~~p~~~~d~~~~~~~~~Cy~~~~~~~Clp 331 (507)
T KOG3776|consen 253 NMINGTDGSLFPPFLQKEDELYIFSSDLCRSIPLTYSETV-TVNGIPAYRFVVPEDSFDNTLDNPDGFCYCTEKKPNCLP 331 (507)
T ss_pred ccccCCCcccCCCccCCCCeeEEEchhhhcceEeEeeeEE-EECCccceeeccchhhcCCCCCCCCccccCccccCCCCc
Confidence 9999999999999999999999999999999999999999 99999999999999999999999999999986 45999
Q ss_pred CcceeccCCCCCCceeecccccccCCccccccccccCCCCcccCceeEEEecccccchhHHHHH-HHHHhhccccccccc
Q psy16515 355 KGLFNVSLCQYDSPVMLSFPHFYLGNQSLLDAVEGVSKPDPEKHALFIDVQPSATSQSKHAARF-LRLAMASIMDILKVK 433 (570)
Q Consensus 355 ~Gl~nlS~C~~gaPi~~S~PHFy~aDp~l~~~VeGl~Pd~~ekH~tyidiEP~tG~~L~~~~Rl-INl~V~~~~~~~~~~ 433 (570)
+|++|+|+|++|+||++|+||||+|||+|+++|+||+|+ +|+|++|+||||+||+||++++|+ +|+.|.+..++...+
T Consensus 332 ~G~~niS~C~~~~pv~~S~PHFy~adp~~~~~v~Gl~P~-~e~He~~~dieP~tG~plq~~~RlQiNl~v~~~~~~~~~~ 410 (507)
T KOG3776|consen 332 SGVLNISQCQGGAPVYLSFPHFYLADPVLVEAVEGLNPN-KEKHETYFDIEPKTGTPLQAAKRLQINLPVEPVKGIRSMS 410 (507)
T ss_pred cCceeehhhcCCCcceecCchhccCCHhHHhcCCCCCCC-hhhCceEEEeccCCCCeeEEeEEEEEEEEecccCCccccc
Confidence 999999999999999999999999999999999999999 899999999999999999999999 999999999999999
Q ss_pred ccceeeeeeeeecccchhHHhhhhcCCCccCCCccccccccccCCCCCHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q psy16515 434 PFVEVTVGQLLWGYEDPLLKLAKDVVPKEQKLPYEEFGLLYGGIDGLPAEVTDLLRVATTAPASAKVVLLYILFTAGTLL 513 (570)
Q Consensus 434 ~f~~~tv~pllWGY~DpLl~la~~~~p~~~~~p~~~fG~f~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~il 513 (570)
.+++..+ |+|| .++ +.. ++++++++++.++...+.+...+.++++++|+++
T Consensus 411 ~~~~~i~-Pl~W---------------------~~e------~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~g~~~ 461 (507)
T KOG3776|consen 411 NLPNVII-PLFW---------------------LEE------GVG-LSDETLNLIKLGLVLKPNIVLYLLYLLLLLGVVL 461 (507)
T ss_pred cccceEe-eEEE---------------------Eee------ccC-ccHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 9998888 9999 888 777 9999999999998888888888999999999999
Q ss_pred HHHHhheeeeeCCCCccccccccc
Q psy16515 514 LITAVFCLIRNSSRQSTLSLEGTA 537 (570)
Q Consensus 514 l~~~~~~~~~~~~~~~~~~~~~~~ 537 (570)
+++.++|.+|...|++++..+...
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~ 485 (507)
T KOG3776|consen 462 LALIVFCVIRSLVRASDLLLENLT 485 (507)
T ss_pred HHHhheeEeccccccccccccccc
Confidence 999999999988777776665444
No 3
>PF11271 DUF3068: Protein of unknown function (DUF3068); InterPro: IPR021424 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=97.25 E-value=0.00059 Score=71.48 Aligned_cols=41 Identities=29% Similarity=0.356 Sum_probs=37.4
Q ss_pred cCCCCCCCceEEEEeccccceeeeEEeeeeeeeCCeeEEEEec
Q psy16515 287 FPPHIEKDRTLFVYDKDVCRLLPLVFDKEVETNGNVLGYRFTP 329 (570)
Q Consensus 287 fpP~l~~~d~l~vF~~dlCRsl~l~y~~~~~~~~GI~~~ry~~ 329 (570)
||++.+| ....+|++.+-++.+++|.++. +++|++.|||+-
T Consensus 142 FPf~tek-~~Y~~fD~~~r~a~p~~f~ge~-~v~G~~vY~F~q 182 (301)
T PF11271_consen 142 FPFDTEK-RSYPYFDPTTRTAVPADFVGEE-EVDGREVYRFEQ 182 (301)
T ss_pred CCCCCCC-CCcccCCcccCcccceEeccce-EECCEEEEEEEE
Confidence 8887776 5689999999999999999999 999999999985
No 4
>KOG3776|consensus
Probab=97.06 E-value=0.00026 Score=78.86 Aligned_cols=60 Identities=55% Similarity=0.867 Sum_probs=47.6
Q ss_pred HHHHhhcccccccccccceeeeeeeee-cccchhHHhhhhcCCCccCCCccccccccccCCCC
Q psy16515 419 LRLAMASIMDILKVKPFVEVTVGQLLW-GYEDPLLKLAKDVVPKEQKLPYEEFGLLYGGIDGL 480 (570)
Q Consensus 419 INl~V~~~~~~~~~~~f~~~tv~pllW-GY~DpLl~la~~~~p~~~~~p~~~fG~f~~~~~~l 480 (570)
..+.+.-.....+.++|.+++++++|| ||+|||+++++++.| ...+.++||+|++++.+.
T Consensus 156 ~~~~~~~~~~~~~~~~f~~~tV~e~Lf~GYeDpll~l~~~~~~--~~~~~~r~G~~~~~Ngt~ 216 (507)
T KOG3776|consen 156 LRLAISIALTILGEKPFVTVTVGELLFDGYEDPLLSLINRFVP--IKPPSPRFGLFYGYNGTS 216 (507)
T ss_pred HHHHHHHHHHHhCCCcceEeeHHHHHHhhcccHHHHHHhhcCC--cCCcccceeeecccCCCc
Confidence 334444445566889999999999999 999999999998766 334589999999998743
No 5
>PF01130 CD36: CD36 family; InterPro: IPR002159 CD36 is a transmembrane, highly glycosylated, 88kDa glycoprotein expressed by monocytes, macrophages, platelets, microvascular endothelial cells and adipose tissues. Platelet glycoprotein IV (GP IV)(GPIIIb) (CD36 antigen) is also called GPIV, OKM5-antigen or PASIV. CD36 recognises oxidized low density lipoprotein, long chain fatty acids, anionic phospholipids, collagen types I, IV and V, thrombospondin (TSP) and Plasmodium falciparum infected erythrocytes. The recognition of apoptotic neutrophils is in co-operation with TSP and avb3. Other ligands may still be unknown. CD36 is a scavenger receptor for oxidized LDL and shed photoreceptor outer segments and in recognition and phagocytosis of apoptotic cells and is the cell adhesion molecule in platelet adhesion and aggregation, platelet-monocyte and platelet-tumor cell interaction []. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0007155 cell adhesion, 0016020 membrane
Probab=96.22 E-value=0.0023 Score=70.89 Aligned_cols=57 Identities=44% Similarity=0.775 Sum_probs=44.0
Q ss_pred HHHhhcccccccccccceeeeeeeee-cccchhHHhhhh----cCCCccCCCccccccccccCC
Q psy16515 420 RLAMASIMDILKVKPFVEVTVGQLLW-GYEDPLLKLAKD----VVPKEQKLPYEEFGLLYGGID 478 (570)
Q Consensus 420 Nl~V~~~~~~~~~~~f~~~tv~pllW-GY~DpLl~la~~----~~p~~~~~p~~~fG~f~~~~~ 478 (570)
+..+....+..+.++|.+++++++|| ||+||++++++. +.|... +.++||||++++.
T Consensus 147 ~~~~~~~l~~~~~~~fv~~tv~e~Lf~GY~dpll~~~~~~~~~~~~~~~--~~~~fg~~~~~N~ 208 (467)
T PF01130_consen 147 KSLINLLLNSLGEKLFVTRTVRELLFDGYEDPLLSLAKKLLDFLRPDLI--PFDKFGLFYGRNG 208 (467)
T ss_pred HHHHHHhhhccCCcceEeccHHHhhhccCchHHHHHHhhhhhhcCCccC--CCCccccccccCC
Confidence 33344444444788999999999999 999999999998 555432 6899999988765
No 6
>PLN00218 predicted protein; Provisional
Probab=85.26 E-value=0.79 Score=40.97 Aligned_cols=17 Identities=59% Similarity=1.512 Sum_probs=8.2
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy16515 25 CCFFIFDFYFFFFFFFF 41 (570)
Q Consensus 25 ~~~~~~~~~~~~~~~~~ 41 (570)
|..|+++=|||.|||||
T Consensus 7 csyfpyfryfflfffff 23 (151)
T PLN00218 7 CSYFPYFRYFFLFFFFF 23 (151)
T ss_pred hhhcHHHHHHHHHHHHH
Confidence 55555554444444433
No 7
>PF15345 TMEM51: Transmembrane protein 51
Probab=54.44 E-value=2.9 Score=42.30 Aligned_cols=27 Identities=30% Similarity=0.560 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhheeeeeCCCCc
Q psy16515 503 LYILFTAGTLLLITAVFCLIRNSSRQS 529 (570)
Q Consensus 503 ~~~~~~~G~ill~~~~~~~~~~~~~~~ 529 (570)
.|+|++.|++||++++-+-+|++||+.
T Consensus 61 AyVLVG~Gv~LLLLSICL~IR~KRr~r 87 (233)
T PF15345_consen 61 AYVLVGSGVALLLLSICLSIRDKRRRR 87 (233)
T ss_pred EEehhhHHHHHHHHHHHHHHHHHHHHh
Confidence 578889999999999987778766555
No 8
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=44.46 E-value=11 Score=34.53 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhheeeeeCCCC
Q psy16515 505 ILFTAGTLLLITAVFCLIRNSSRQ 528 (570)
Q Consensus 505 ~~~~~G~ill~~~~~~~~~~~~~~ 528 (570)
++|++.++++++++.|+-|+|+|+
T Consensus 6 ~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 6 AIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444444444444444444444
No 9
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=44.46 E-value=12 Score=34.41 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhheeeeeCCCCc
Q psy16515 507 FTAGTLLLITAVFCLIRNSSRQS 529 (570)
Q Consensus 507 ~~~G~ill~~~~~~~~~~~~~~~ 529 (570)
+++|+|++|+.+.+++|+++|++
T Consensus 73 v~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 73 VMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHHHHHHhccC
Confidence 44555554443333333333333
No 10
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=42.57 E-value=13 Score=25.73 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhheeeeeC
Q psy16515 504 YILFTAGTLLLITAVFCLIRNS 525 (570)
Q Consensus 504 ~~~~~~G~ill~~~~~~~~~~~ 525 (570)
..+..+|+++++.+.+++.|++
T Consensus 11 ~~~~~~G~~l~~~~~~~~~~rk 32 (34)
T TIGR01167 11 SLLLLLGLLLLGLGGLLLRKRK 32 (34)
T ss_pred HHHHHHHHHHHHHHHHHheecc
Confidence 3444556655555554555444
No 11
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=36.72 E-value=13 Score=30.50 Aligned_cols=15 Identities=20% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHh
Q psy16515 504 YILFTAGTLLLITAV 518 (570)
Q Consensus 504 ~~~~~~G~ill~~~~ 518 (570)
++..++|++++++.+
T Consensus 15 IaG~Vvgll~ailLI 29 (64)
T PF01034_consen 15 IAGGVVGLLFAILLI 29 (64)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555544433
No 12
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=31.75 E-value=47 Score=34.89 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhheeeeeCCCC
Q psy16515 505 ILFTAGTLLLITAVFCLIRNSSRQ 528 (570)
Q Consensus 505 ~~~~~G~ill~~~~~~~~~~~~~~ 528 (570)
+++++|++++++.+++..|+|+|.
T Consensus 278 G~~La~lvlivLiaYli~Rrr~~~ 301 (306)
T PF01299_consen 278 GAALAGLVLIVLIAYLIGRRRSRA 301 (306)
T ss_pred HHHHHHHHHHHHHhheeEeccccc
Confidence 444455666666666666665543
No 13
>TIGR02205 septum_zipA cell division protein ZipA. This model represents the full length of bacterial cell division protein ZipA. The N-terminal hydrophobic stretch is an uncleaved signal-anchor sequence. This is followed by an unconserved, variable length, low complexity region, and then a conserved C-terminal region of about 140 amino acids (see pfam04354) that interacts with the tubulin-like cell division protein FtsZ.
Probab=30.64 E-value=29 Score=36.45 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhh-eeeeeCCCCccc
Q psy16515 503 LYILFTAGTLLLITAVF-CLIRNSSRQSTL 531 (570)
Q Consensus 503 ~~~~~~~G~ill~~~~~-~~~~~~~~~~~~ 531 (570)
..+||++|+|.+++.++ =+|++|+.++.+
T Consensus 3 r~iLIIvGaiaI~aLl~hGlwt~Rke~s~~ 32 (284)
T TIGR02205 3 RIILIIVGILAIAALLFHGLWTSRKEKSKY 32 (284)
T ss_pred eehHHHHHHHHHHHHHHccccccccccccc
Confidence 45788899888776555 455555545544
No 14
>PF00746 Gram_pos_anchor: Gram positive anchor; InterPro: IPR019948 Viruses, parasites and bacteria are covered in protein and sugar molecules that help them gain entry into a host by counteracting the host's defences. One such molecule is the M protein produced by certain streptococcal bacteria. M proteins embody a motif that is now known to be shared by many Gram-positive bacterial surface proteins. The motif includes a conserved hexapeptide, which precedes a hydrophobic C-terminal membrane anchor, which itself precedes a cluster of basic residues [, ]. This structure is represented in the following schematic representation: +--------------------------------------------+-+--------+-+ | Variable length extracellular domain |H| Anchor |B| +--------------------------------------------+-+--------+-+ 'H': conserved hexapeptide. 'B': cluster of basic residues. It has been proposed that this hexapeptide sequence is responsible for a post- translational modification necessary for the proper anchoring of the proteins which bear it, to the cell wall.; PDB: 2XTL_B 3QDH_A 2Y1V_C 2X9X_A 3RPK_A 2X9W_A 2X9Y_A.
Probab=27.75 E-value=20 Score=25.83 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhheeeee
Q psy16515 495 PASAKVVLLYILFTAGTLLLITAVFCLIRN 524 (570)
Q Consensus 495 ~~~~~~~~~~~~~~~G~ill~~~~~~~~~~ 524 (570)
+|..+......+.++|+++++.+.+++.++
T Consensus 9 LP~TG~~~~~~~~~~G~l~~~~~~~~~~kr 38 (39)
T PF00746_consen 9 LPKTGENSNSILTILGALLLLGGGLLLVKR 38 (39)
T ss_dssp ------------------------------
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHheec
Confidence 345555556677778876666666555543
No 15
>PRK03427 cell division protein ZipA; Provisional
Probab=24.83 E-value=62 Score=34.82 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhh-eeeeeCCCCcccccccc
Q psy16515 502 LLYILFTAGTLLLITAVF-CLIRNSSRQSTLSLEGT 536 (570)
Q Consensus 502 ~~~~~~~~G~ill~~~~~-~~~~~~~~~~~~~~~~~ 536 (570)
+..+||++|.|.+|..++ =+|..||.+|++.-+..
T Consensus 5 LrLiLivvGAIAIiAlL~HGlWtsRKers~~frdrP 40 (333)
T PRK03427 5 LRLILIIVGAIAIIALLVHGFWTSRKERSSMFRDRP 40 (333)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhccccccchhccCC
Confidence 467888888887776655 34545555555544433
No 16
>COG3115 ZipA Cell division protein [Cell division and chromosome partitioning]
Probab=23.29 E-value=58 Score=34.45 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhh-eeeeeCCCCccccc
Q psy16515 503 LYILFTAGTLLLITAVF-CLIRNSSRQSTLSL 533 (570)
Q Consensus 503 ~~~~~~~G~ill~~~~~-~~~~~~~~~~~~~~ 533 (570)
..++|++|+|.+++.++ =+|++|+++|+.-.
T Consensus 5 r~ILIIvG~IAIiaLLvhGlWtsRkE~s~~F~ 36 (324)
T COG3115 5 RLILIIVGAIAIIALLVHGLWTSRKERSSYFR 36 (324)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhcchhhccccc
Confidence 45677778777666555 45776666665433
No 17
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=22.91 E-value=1.1e+02 Score=29.52 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhheeeeeC
Q psy16515 498 AKVVLLYILFTAGTLLLITAVFCLIRNS 525 (570)
Q Consensus 498 ~~~~~~~~~~~~G~ill~~~~~~~~~~~ 525 (570)
+..++..+++++|+++++.++.++++++
T Consensus 37 ~s~~lg~~~lAlg~vL~~~g~~~~~~~~ 64 (191)
T PF04156_consen 37 ISFILGIALLALGVVLLSLGLLCLLSKR 64 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3444555667788888888877665544
No 18
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=22.10 E-value=46 Score=26.13 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhheeeeeCCCCccccccccc
Q psy16515 504 YILFTAGTLLLITAVFCLIRNSSRQSTLSLEGTA 537 (570)
Q Consensus 504 ~~~~~~G~ill~~~~~~~~~~~~~~~~~~~~~~~ 537 (570)
++++.+++++.+++++.+++.-|++.--++||++
T Consensus 5 ~~LIpiSl~l~~~~l~~f~Wavk~GQfDDle~~a 38 (51)
T TIGR00847 5 TILIPISLLLGGVGLVAFLWSLKSGQYDDLKGAA 38 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCCCccHH
Confidence 4455555555555554444444555555777776
No 19
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=21.47 E-value=60 Score=28.43 Aligned_cols=36 Identities=22% Similarity=0.441 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhh-----eeeeeCCCCcccccc-ccc
Q psy16515 502 LLYILFTAGTLLLITAVF-----CLIRNSSRQSTLSLE-GTA 537 (570)
Q Consensus 502 ~~~~~~~~G~ill~~~~~-----~~~~~~~~~~~~~~~-~~~ 537 (570)
+-.+++++|++-|+...+ ++++-+|.+++..+. |+.
T Consensus 41 ~i~~lvaVg~~YL~y~~fLkDlIlv~KAkrqrsTeEigFG~t 82 (91)
T PF01708_consen 41 AIFTLVAVGCLYLAYTWFLKDLILVLKAKRQRSTEEIGFGNT 82 (91)
T ss_pred eehHHHHHHHHHHHHHHHHHHHhheeeeccCCceeeeeeCCC
Confidence 345666777777666544 555555555555443 444
No 20
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=20.54 E-value=54 Score=25.01 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhheeeeeCCCCccccccccc
Q psy16515 504 YILFTAGTLLLITAVFCLIRNSSRQSTLSLEGTA 537 (570)
Q Consensus 504 ~~~~~~G~ill~~~~~~~~~~~~~~~~~~~~~~~ 537 (570)
++++.+++++.++++..+++..|+++==++|+.+
T Consensus 4 ~~lip~sl~l~~~~l~~f~Wavk~GQfdD~e~~a 37 (45)
T PF03597_consen 4 YILIPVSLILGLIALAAFLWAVKSGQFDDLEGPA 37 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHccCCCCCCcchH
Confidence 3444455555444444444343444444666665
Done!