Query psy16515
Match_columns 570
No_of_seqs 225 out of 731
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 23:18:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16515.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16515hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2t_A Receptor tyrosine-prote 36.1 25 0.00087 25.7 2.8 18 512-529 24-41 (44)
2 2ks1_B Epidermal growth factor 29.2 26 0.00088 25.6 1.9 16 513-528 26-41 (44)
3 2jo1_A Phospholemman; FXYD1, N 25.9 84 0.0029 25.2 4.4 30 499-529 20-49 (72)
4 2jwa_A Receptor tyrosine-prote 23.3 37 0.0013 24.8 1.8 9 519-527 32-40 (44)
5 2k1k_A Ephrin type-A receptor 19.0 79 0.0027 22.2 2.7 18 507-524 20-37 (38)
6 2l8s_A Integrin alpha-1; trans 17.3 78 0.0027 24.1 2.5 16 507-522 16-31 (54)
7 2knc_A Integrin alpha-IIB; tra 9.6 2.1E+02 0.007 21.7 2.8 16 507-522 19-34 (54)
8 2kxr_A Tight junction protein 8.4 91 0.0031 27.3 0.5 27 351-385 69-95 (118)
9 1iij_A ERBB-2 receptor protein 8.0 2.3E+02 0.008 19.6 2.3 6 520-525 29-34 (35)
10 2knc_B Integrin beta-3; transm 8.0 1.7E+02 0.0058 23.7 1.9 23 501-523 11-33 (79)
No 1
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=36.13 E-value=25 Score=25.68 Aligned_cols=18 Identities=11% Similarity=0.161 Sum_probs=9.0
Q ss_pred HHHHHHhheeeeeCCCCc
Q psy16515 512 LLLITAVFCLIRNSSRQS 529 (570)
Q Consensus 512 ill~~~~~~~~~~~~~~~ 529 (570)
+++++++++++|++++++
T Consensus 24 ~ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 24 VIVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHHhhhhhhhh
Confidence 333444456666655443
No 2
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=29.22 E-value=26 Score=25.61 Aligned_cols=16 Identities=6% Similarity=0.077 Sum_probs=7.8
Q ss_pred HHHHHhheeeeeCCCC
Q psy16515 513 LLITAVFCLIRNSSRQ 528 (570)
Q Consensus 513 ll~~~~~~~~~~~~~~ 528 (570)
++++++++++|+++++
T Consensus 26 ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 26 VVALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhhhhHhh
Confidence 3334444566555443
No 3
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=25.94 E-value=84 Score=25.17 Aligned_cols=30 Identities=27% Similarity=0.491 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhheeeeeCCCCc
Q psy16515 499 KVVLLYILFTAGTLLLITAVFCLIRNSSRQS 529 (570)
Q Consensus 499 ~~~~~~~~~~~G~ill~~~~~~~~~~~~~~~ 529 (570)
+.+...+++++|+++++..= |-|+..++++
T Consensus 20 GLifA~vLfi~GI~iilS~K-ckCk~~qk~r 49 (72)
T 2jo1_A 20 GLVIAGILFILGILIVLSRR-CRCKFNQQQR 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHCTTTS
T ss_pred chHHHHHHHHHHHHHHHcCc-cccCCCCCCC
Confidence 34445566777777665544 4444443333
No 4
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=23.27 E-value=37 Score=24.82 Aligned_cols=9 Identities=22% Similarity=0.231 Sum_probs=4.0
Q ss_pred heeeeeCCC
Q psy16515 519 FCLIRNSSR 527 (570)
Q Consensus 519 ~~~~~~~~~ 527 (570)
++++|+++.
T Consensus 32 ~~~~RRR~~ 40 (44)
T 2jwa_A 32 GILIKRRQQ 40 (44)
T ss_dssp HHHHHHHCS
T ss_pred Hhheehhhh
Confidence 344544433
No 5
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=19.00 E-value=79 Score=22.21 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhheeeee
Q psy16515 507 FTAGTLLLITAVFCLIRN 524 (570)
Q Consensus 507 ~~~G~ill~~~~~~~~~~ 524 (570)
.++|+.+++..+++++|+
T Consensus 20 ~v~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 20 LLLGAALLLGILVFRSRR 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHeec
Confidence 444555554444444443
No 6
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=17.27 E-value=78 Score=24.10 Aligned_cols=16 Identities=38% Similarity=0.480 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhheee
Q psy16515 507 FTAGTLLLITAVFCLI 522 (570)
Q Consensus 507 ~~~G~ill~~~~~~~~ 522 (570)
+..|++++++.++++|
T Consensus 16 vl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 16 AFAGLLLLMLLILALW 31 (54)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555444444333
No 7
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=9.59 E-value=2.1e+02 Score=21.73 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhheee
Q psy16515 507 FTAGTLLLITAVFCLI 522 (570)
Q Consensus 507 ~~~G~ill~~~~~~~~ 522 (570)
+..|++++++.++++|
T Consensus 19 vl~GLllL~li~~~Lw 34 (54)
T 2knc_A 19 VLGGLLLLTILVLAMW 34 (54)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555544444444
No 8
>2kxr_A Tight junction protein ZO-1; beta-barrel, protein binding; NMR {Homo sapiens}
Probab=8.43 E-value=91 Score=27.30 Aligned_cols=27 Identities=30% Similarity=0.589 Sum_probs=19.9
Q ss_pred CCCCCcceeccCCCCCCceeecccccccCCccccc
Q psy16515 351 PCAPKGLFNVSLCQYDSPVMLSFPHFYLGNQSLLD 385 (570)
Q Consensus 351 ~C~p~Gl~nlS~C~~gaPi~~S~PHFy~aDp~l~~ 385 (570)
.|.|.|+. +.-|+++++||+ |.+.+.+
T Consensus 69 ~cGP~G~~------F~~PViL~iPHc--a~~~W~~ 95 (118)
T 2kxr_A 69 AAGPHGLK------FLKPVELRLPHC--DPKTWQN 95 (118)
T ss_dssp ECSSSCCE------EEEEEEEEECCC--CTTSSCS
T ss_pred EECCCCCc------CcCCEEEEcCCC--Cccchhh
Confidence 48888874 456999999999 4555544
No 9
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=8.02 E-value=2.3e+02 Score=19.59 Aligned_cols=6 Identities=33% Similarity=0.540 Sum_probs=2.8
Q ss_pred eeeeeC
Q psy16515 520 CLIRNS 525 (570)
Q Consensus 520 ~~~~~~ 525 (570)
+++|++
T Consensus 29 ~~iRRr 34 (35)
T 1iij_A 29 ILIKRR 34 (35)
T ss_dssp HHHHHC
T ss_pred eEEeec
Confidence 455443
No 10
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=7.99 E-value=1.7e+02 Score=23.71 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhheeee
Q psy16515 501 VLLYILFTAGTLLLITAVFCLIR 523 (570)
Q Consensus 501 ~~~~~~~~~G~ill~~~~~~~~~ 523 (570)
...++.++.|++|+.+.++++||
T Consensus 11 ~~Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Done!