Query psy16515
Match_columns 570
No_of_seqs 225 out of 731
Neff 5.9
Searched_HMMs 13730
Date Fri Aug 16 23:18:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16515.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16515hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d0gr3 g.24.1.1 (R:102-128) D 9.9 58 0.0042 19.4 1.4 11 354-364 7-17 (27)
2 g1uhe.1 b.52.2.1 (B:,A:) Pyruv 5.6 84 0.0062 25.6 0.9 22 104-125 35-56 (121)
3 d1up7a1 c.2.1.5 (A:1-162) 6-ph 5.1 1.1E+02 0.0081 25.3 1.5 15 111-125 132-146 (162)
4 d1s6ya1 c.2.1.5 (A:4-172) 6-ph 5.1 1.1E+02 0.0081 25.5 1.5 15 111-125 139-153 (169)
5 d1fftb2 f.17.2.1 (B:27-117) Cy 4.8 1.1E+02 0.0077 23.3 1.0 13 517-529 36-48 (91)
6 d1obba1 c.2.1.5 (A:2-172) Alph 4.8 1.2E+02 0.0088 25.4 1.4 15 111-125 144-158 (171)
7 d1ppya_ b.52.2.1 (A:) Pyruvoyl 4.5 1.1E+02 0.0081 24.8 0.9 33 93-125 23-57 (118)
8 d1bdsa_ g.9.1.1 (A:) BDs-I def 4.1 1.7E+02 0.012 18.7 1.4 21 354-375 23-43 (43)
9 d3dtub2 f.17.2.1 (B:30-129) Ba 4.0 2.5E+02 0.019 21.1 2.8 11 519-529 49-59 (100)
10 d2q66a3 d.58.16.1 (A:352-529) 3.4 71 0.0052 27.6 -1.4 19 323-341 160-178 (178)
No 1
>d1d0gr3 g.24.1.1 (R:102-128) Death receptor-5 (dr5) fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.85 E-value=58 Score=19.37 Aligned_cols=11 Identities=36% Similarity=0.966 Sum_probs=9.8
Q ss_pred CCcceeccCCC
Q psy16515 354 PKGLFNVSLCQ 364 (570)
Q Consensus 354 p~Gl~nlS~C~ 364 (570)
|.|+..++.|.
T Consensus 7 prg~vkv~dct 17 (27)
T d1d0gr3 7 PRGMVKVGDCT 17 (27)
T ss_dssp CTTCEEEECCB
T ss_pred CCcceEeccCc
Confidence 78999999996
No 2
>g1uhe.1 b.52.2.1 (B:,A:) Pyruvoyl dependent aspartate decarboxylase, ADC {Helicobacter pylori [TaxId: 210]}
Probab=5.58 E-value=84 Score=25.63 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=17.0
Q ss_pred CCCcceEEEEEEEccChhhhhc
Q psy16515 104 PPVHPVIRIFIYNVTNADEFLS 125 (570)
Q Consensus 104 pp~p~~~~~Y~FNvTNpee~l~ 125 (570)
-..-.+=+|.+||+||-+.|..
T Consensus 35 a~i~p~E~V~V~N~~NG~Rf~T 56 (121)
T g1uhe.1 35 AKLREGMKVEIVDVNNGERFST 56 (121)
T ss_dssp TTCCTTCEEEEEETTTCCEEEE
T ss_pred cCCCCCCEEEEEECCCCeEEEe
Confidence 3455567999999999887764
No 3
>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}
Probab=5.12 E-value=1.1e+02 Score=25.26 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=12.6
Q ss_pred EEEEEEccChhhhhc
Q psy16515 111 RIFIYNVTNADEFLS 125 (570)
Q Consensus 111 ~~Y~FNvTNpee~l~ 125 (570)
+-++.|+|||-+++.
T Consensus 132 ~a~~i~vtNPvdiit 146 (162)
T d1up7a1 132 NATIVNFTNPSGHIT 146 (162)
T ss_dssp CCEEEECSSSHHHHH
T ss_pred CeEEEEeCCHHHHHH
Confidence 567899999999864
No 4
>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=5.11 E-value=1.1e+02 Score=25.49 Aligned_cols=15 Identities=20% Similarity=0.421 Sum_probs=12.9
Q ss_pred EEEEEEccChhhhhc
Q psy16515 111 RIFIYNVTNADEFLS 125 (570)
Q Consensus 111 ~~Y~FNvTNpee~l~ 125 (570)
+-++.|+|||-+++.
T Consensus 139 da~~i~vtNPvdv~t 153 (169)
T d1s6ya1 139 DAWLINFTNPAGMVT 153 (169)
T ss_dssp TCEEEECSSSHHHHH
T ss_pred CeEEEEeCChHHHHH
Confidence 568999999999864
No 5
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=4.83 E-value=1.1e+02 Score=23.26 Aligned_cols=13 Identities=15% Similarity=-0.008 Sum_probs=6.5
Q ss_pred HhheeeeeCCCCc
Q psy16515 517 AVFCLIRNSSRQS 529 (570)
Q Consensus 517 ~~~~~~~~~~~~~ 529 (570)
.+++.+|.|+|++
T Consensus 36 ~~~~~~ryR~~~~ 48 (91)
T d1fftb2 36 AVGFAWKYRASNK 48 (91)
T ss_dssp HHTTTTTTTTSTT
T ss_pred HHhhheeeeccCC
Confidence 3445555555444
No 6
>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}
Probab=4.77 E-value=1.2e+02 Score=25.36 Aligned_cols=15 Identities=7% Similarity=-0.091 Sum_probs=12.9
Q ss_pred EEEEEEccChhhhhc
Q psy16515 111 RIFIYNVTNADEFLS 125 (570)
Q Consensus 111 ~~Y~FNvTNpee~l~ 125 (570)
+-++.|+|||-+++.
T Consensus 144 ~a~~i~~TNPvdv~t 158 (171)
T d1obba1 144 KAWYLQAANPIFEGT 158 (171)
T ss_dssp TCEEEECSSCHHHHH
T ss_pred CeEEEEECChHHHHH
Confidence 678999999999864
No 7
>d1ppya_ b.52.2.1 (A:) Pyruvoyl dependent aspartate decarboxylase, ADC {Escherichia coli [TaxId: 562]}
Probab=4.50 E-value=1.1e+02 Score=24.77 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=22.7
Q ss_pred cCccccc--ccccCCCcceEEEEEEEccChhhhhc
Q psy16515 93 EGAQVFE--MWRKPPVHPVIRIFIYNVTNADEFLS 125 (570)
Q Consensus 93 ~gS~~y~--~W~~pp~p~~~~~Y~FNvTNpee~l~ 125 (570)
+||.+-+ .-..-..-.+=+|.++|+||-+.|.-
T Consensus 23 eGSitID~~Lm~aagi~~~EkV~V~Nv~NG~Rf~T 57 (118)
T d1ppya_ 23 EGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFST 57 (118)
T ss_dssp TTSEEEEHHHHHHHTCCTTCEEEEEETTTCCEEEE
T ss_pred eEEEEECHHHHHHcCCCCCCEEEEEECCCCcEEEE
Confidence 3665532 33445566677999999999988754
No 8
>d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=4.10 E-value=1.7e+02 Score=18.74 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=12.3
Q ss_pred CCcceeccCCCCCCceeecccc
Q psy16515 354 PKGLFNVSLCQYDSPVMLSFPH 375 (570)
Q Consensus 354 p~Gl~nlS~C~~gaPi~~S~PH 375 (570)
|.|---.|.|+ .-|-+-..||
T Consensus 23 pggygytsncy-kwpniccyph 43 (43)
T d1bdsa_ 23 PGGYGYTSNCY-KWPNICCYPH 43 (43)
T ss_dssp CTTTCCCCEEE-ETTEEEECCC
T ss_pred CCCcccccccc-cCCcccccCC
Confidence 44444456663 5666666666
No 9
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.00 E-value=2.5e+02 Score=21.11 Aligned_cols=11 Identities=9% Similarity=0.374 Sum_probs=5.0
Q ss_pred heeeeeCCCCc
Q psy16515 519 FCLIRNSSRQS 529 (570)
Q Consensus 519 ~~~~~~~~~~~ 529 (570)
++.+|.|+|++
T Consensus 49 ~~~~~~r~~~~ 59 (100)
T d3dtub2 49 YAVWRFHEKRN 59 (100)
T ss_dssp HHHHHHBTTTC
T ss_pred HHhhhhhccCC
Confidence 34445444443
No 10
>d2q66a3 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.42 E-value=71 Score=27.58 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=14.4
Q ss_pred eEEEEecCccccccCCCCC
Q psy16515 323 LGYRFTPSKDVFATVEENP 341 (570)
Q Consensus 323 ~~~ry~~~~~~f~n~~~~p 341 (570)
..-|+.+|+++|..+++.|
T Consensus 160 hVk~~dLP~~Vf~~Ge~rP 178 (178)
T d2q66a3 160 FVKGYDLPDEVFDENEKRP 178 (178)
T ss_dssp EEEGGGCCGGGSCTTCCCC
T ss_pred EechhhCchhhcCCCCCCc
Confidence 3457899999999886554
Done!