RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16515
(570 letters)
>gnl|CDD|216316 pfam01130, CD36, CD36 family. The CD36 family is thought to be a
novel class of scavenger receptors. There is also
evidence suggesting a possible role in signal
transduction. CD36 is involved in cell adhesion.
Length = 460
Score = 342 bits (880), Expect = e-112
Identities = 167/464 (35%), Positives = 242/464 (52%), Gaps = 60/464 (12%)
Query: 87 QQLTLREGAQVFEMWRKPPVHPVIRIFIYNVTNADEFLSVPGTKPVLDEIGPYVYVQTWE 146
+QL LR G+ FE W PPV +++++NVTN +E L+ G KP+++E+GPYVY + E
Sbjct: 30 KQLVLRPGSDTFESWENPPVPLYFKVYLFNVTNPEEVLN-GGAKPIVEEVGPYVYREYRE 88
Query: 147 KVDLSFLPNGS-VTFNQRKVFRFDPDQSVGS-EDDVVIVPNIPMLT----------WEKV 194
KV+++F NG+ V++ QR+ + FDP+ SVG EDDV+ VPNIPML ++
Sbjct: 89 KVNVTFNDNGTTVSYKQRRTYVFDPELSVGGPEDDVITVPNIPMLGAAATAKSMSPLLRL 148
Query: 195 DLSFLPN--GSVTFNQRKVFRF-----DPDQSVGSEDDVVIVPNIPMLK-------NGTS 240
++ G F R V DP S+ + P++P K NGT
Sbjct: 149 LINAALKSLGEKPFVTRTVGELLFGYEDPLLSLAKK--PPFNPDLPFDKFGLFYGRNGTY 206
Query: 241 KDNVTVFTGENGIMKFGLIDKYNGRDHLPHWKTDACNSLEGSDGSIFPPHIEKDRTLFVY 300
TV TG + I K G ID +NG HL W TD CN + G+DGS+FPP + K TL+V+
Sbjct: 207 DGVFTVNTGVDDISKLGQIDSWNGETHLGWWPTDECNMINGTDGSLFPPFLTKKDTLYVF 266
Query: 301 DKDVCRLLPLVFDKEVETNGNVLGYRFTPSKDVFATVEENPANDCFCPSP-PCAPKGLFN 359
D+CR +PLV+ + V NG + GYR+ DVF NP N+CFC C P GL +
Sbjct: 267 SPDLCRSIPLVYQETVTYNG-IPGYRYVGPPDVFDNGTNNPENECFCVKNQDCLPSGLLD 325
Query: 360 VSLCQYDSPVMLSFPHFYLGNQSLLDAVEGVSKPDPEKHALFIDVQPSATSQSKHAARFL 419
VS C Y +P+ LSFPHFY + SLL+AVEG+ P+ EKH FID++P+ + + A R
Sbjct: 326 VSKCYYGAPIFLSFPHFYGADPSLLEAVEGL-NPNKEKHETFIDIEPTTGTPLQAAKRL- 383
Query: 420 RLAMASIMDILKVKPFVEVTVGQLLWGYEDPLLKLAKDVVPKEQKLPYEEFGLLYGGIDG 479
+I+ + KVK + ++P L + E G +
Sbjct: 384 ---QINIL-VEKVKGISILK-------------NFPNVILP----LFWFEEGAV------ 416
Query: 480 LPAEVTDLLRVATTAPASAKVVLLYILFTAGTLLLITAVFCLIR 523
L E+ LL+ + L ++L G +LL+ A+ R
Sbjct: 417 LDDELASLLKKQLVILPRIQSYLGWVLLALGLILLLIAIILYFR 460
>gnl|CDD|214443 MTH00163, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 445
Score = 40.5 bits (96), Expect = 0.002
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 11 SFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLP-LLV 69
FLF + + F F F F +SF S+ +FF L LL L+
Sbjct: 3 KFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLI 62
Query: 70 LL 71
LL
Sbjct: 63 LL 64
Score = 37.4 bits (88), Expect = 0.020
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFF--FFFFFFVSFSTSSSFFFFFLHLLPLLVLLPL 73
+ FY F F+ + FF ++F S +F ++ +L LV +P+
Sbjct: 141 IYLLFYTLFASLPLLVGIFYLYNNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPM 197
Score = 36.3 bits (85), Expect = 0.035
Identities = 21/96 (21%), Positives = 30/96 (31%), Gaps = 32/96 (33%)
Query: 7 ISFTSFLFPPPQFFFFFYCCFFIFD-----------------------------FYFFFF 37
+SF L F+F FF D + F
Sbjct: 31 LSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVYKKNNYSNLFL 90
Query: 38 FFFFFFFFFFFVSFSTSS--SFFFFF-LHLLPLLVL 70
F F F ++FS+ + F+ FF L+P L L
Sbjct: 91 FLILFLLIFLLLTFSSMNLLLFYIFFESSLIPTLFL 126
Score = 35.5 bits (83), Expect = 0.070
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 7 ISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLP 66
IS++ FF + ++ + + ++ + S + FLH LP
Sbjct: 374 ISWSKLSMIFLMLLSFFSAAYSLYLYSYSQHGKYYSGLYSC--SSGKVREYLLLFLHWLP 431
Query: 67 LLVLL 71
L +L+
Sbjct: 432 LNLLI 436
Score = 35.5 bits (83), Expect = 0.075
Identities = 8/43 (18%), Positives = 13/43 (30%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFF 61
F + F+ F ++ F +SF F F
Sbjct: 1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSF 43
Score = 35.5 bits (83), Expect = 0.078
Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 7 ISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFF-VSFSTSSSFFFFFLHLL 65
+ FL P ++ + F F F F+F +S+ F L LL
Sbjct: 5 LFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILL 64
Score = 34.0 bits (79), Expect = 0.20
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Query: 1 MKKSLQISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSS-SFFF 59
+K + F L ++ F+ F F F F+F F SF
Sbjct: 2 LKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGL 61
Query: 60 FFL 62
L
Sbjct: 62 ILL 64
Score = 34.0 bits (79), Expect = 0.20
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 17 PQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFF----FFFLHL-LP 66
P FY FF FF F +++S +F FF+HL LP
Sbjct: 153 PLLVGIFYLYNNSGSLSFFLLNFFGSLNFLWYLSM--ILAFLVKMPMFFVHLWLP 205
Score = 33.6 bits (78), Expect = 0.27
Identities = 6/47 (12%), Positives = 11/47 (23%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLL 65
F F F I + ++ F F+ +
Sbjct: 2 LKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNI 48
Score = 28.6 bits (65), Expect = 9.6
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 27 FFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPL 67
F F F F +++ S F F+ L L
Sbjct: 1 MLKFLFMLLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSL 41
>gnl|CDD|165783 PLN00218, PLN00218, predicted protein; Provisional.
Length = 151
Score = 37.3 bits (86), Expect = 0.006
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 33 YFFFFFFFFFFFFFFFVSFSTSSSFFFFFL 62
YF +F +FF FFFFFF S+ FFFFL
Sbjct: 9 YFPYFRYFFLFFFFFFWRESSLVFLFFFFL 38
Score = 37.3 bits (86), Expect = 0.007
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
Query: 25 CCFFIFDFYFFFFFFFFF-------FFFFFFVSFSTS--SSFFFFFLHLLPLL 68
C +F + YFF FFFFFF F FFFF++F F F L P L
Sbjct: 7 CSYFPYFRYFFLFFFFFFWRESSLVFLFFFFLAFHEEVLVCFDVFIWRLFPPL 59
Score = 29.2 bits (65), Expect = 3.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 14 FPPPQFFFFFYCCFFIFDFYFFFFFFFFFFF 44
FP ++FF F+ FF + F FFFF F
Sbjct: 10 FPYFRYFFLFFFFFFWRESSLVFLFFFFLAF 40
>gnl|CDD|214444 MTH00165, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 573
Score = 37.4 bits (88), Expect = 0.017
Identities = 12/43 (27%), Positives = 15/43 (34%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFF 61
F FF F YF + F + F S+S F F
Sbjct: 10 FLFFLSLILFFLGLYFLLNDYSLFIEWELFSLNSSSIVMTFLF 52
Score = 36.7 bits (86), Expect = 0.030
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 32 FYFFFFFFFFFFFFFFFVSFSTSSSFFFFFL 62
FFF FF FF+ + + F+
Sbjct: 4 CLISFFFLFFLSLILFFLGLYFLLNDYSLFI 34
Score = 36.7 bits (86), Expect = 0.032
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 27 FFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFF 60
+ FFF FF FF + F + F
Sbjct: 1 MSMCLISFFFLFFLSLILFFLGLYFLLNDYSLFI 34
Score = 36.3 bits (85), Expect = 0.044
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFF-FFFVSFSTSSSFFFFFL 62
FFF F+ +F +F + F + S + SSS FL
Sbjct: 8 FFFLFFLSLILFFLGLYFLLNDYSLFIEWELFSLN-SSSIVMTFL 51
Score = 32.8 bits (76), Expect = 0.46
Identities = 7/30 (23%), Positives = 8/30 (26%)
Query: 33 YFFFFFFFFFFFFFFFVSFSTSSSFFFFFL 62
FFF FF + F F
Sbjct: 1 MSMCLISFFFLFFLSLILFFLGLYFLLNDY 30
Score = 31.3 bits (72), Expect = 1.6
Identities = 8/61 (13%), Positives = 19/61 (31%)
Query: 12 FLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLL 71
+FP P + + F + + +S++ S + L + +
Sbjct: 440 LIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLKSLKNYKLSSFLGSMWFM 499
Query: 72 P 72
P
Sbjct: 500 P 500
Score = 30.1 bits (69), Expect = 3.8
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 8/65 (12%)
Query: 19 FFFFFYCCFFIFDFYFFFFFF--------FFFFFFFFFVSFSTSSSFFFFFLHLLPLLVL 70
FFIF +FF ++ F S ++ L +++L
Sbjct: 367 MVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLSDESKFMLKSMILL 426
Query: 71 LPLQI 75
L + I
Sbjct: 427 LFMSI 431
Score = 29.3 bits (67), Expect = 6.2
Identities = 6/59 (10%), Positives = 10/59 (16%)
Query: 7 ISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLL 65
+ Y F +F F ++ S L
Sbjct: 461 VILLGGWLGYELSLMSLSYNLKSLKNYKLSSFLGSMWFMPFLSTYGISYYPLNLGSLSL 519
Score = 29.0 bits (66), Expect = 8.8
Identities = 6/47 (12%), Positives = 14/47 (29%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLL 65
+ F + I ++ F ++ + S + L L
Sbjct: 438 SWLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLKSL 484
Score = 28.6 bits (65), Expect = 9.9
Identities = 9/55 (16%), Positives = 13/55 (23%), Gaps = 2/55 (3%)
Query: 19 FFFFFYCCFFIFDFY--FFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLL 71
+ F FY F + + S S+ L L L
Sbjct: 439 WLIFPEPYMICLPFYLKLLTLFVILLGGWLGYELSLMSLSYNLKSLKNYKLSSFL 493
>gnl|CDD|177157 MTH00094, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 403
Score = 37.2 bits (87), Expect = 0.020
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 27 FFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFF 60
F F FF F FF F F ++S S FFFF
Sbjct: 3 LLFFFSPFLFFLFLMFFSFLMFNNYSWSGLFFFF 36
Score = 36.4 bits (85), Expect = 0.034
Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 23 FYCCFFIFDFYFFFFFFFFFFFFFFFVS----FSTSSSFFFFFLHLLPLLVLL 71
FF F FF F FF F F S F SF F L + + +L
Sbjct: 1 LSLLFFFSPFLFFLFLMFFSFLMFNNYSWSGLFFFFDSFVFVLLIFMMVFILG 53
Score = 33.0 bits (76), Expect = 0.41
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFF----FFFLHL-LP 66
FF F F +FFF +F FF + + F S SF +FLHL LP
Sbjct: 123 AFFSFPFLFVYLKNFFFFSLCYFDFFLSWEMFFILSLSFMMKFPVYFLHLWLP 175
Score = 32.2 bits (74), Expect = 0.83
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFL 62
F FFF +F+ FY+ F F F +F+ + L
Sbjct: 346 FSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFNNFNVGLSLPL 389
Score = 31.4 bits (72), Expect = 1.3
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 16 PPQFFFF--FYC---CFFIFDFYFFFFFFFFFFFFFF--FVSFSTSSSFFFFFLHLLPLL 68
PP FF F F F FFF FF+F F++ F+ S+ F + +
Sbjct: 325 PPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFNNFNVG 384
Query: 69 VLLPL 73
+ LPL
Sbjct: 385 LSLPL 389
Score = 30.3 bits (69), Expect = 2.7
Identities = 20/73 (27%), Positives = 24/73 (32%), Gaps = 13/73 (17%)
Query: 12 FLFPPPQFFFFF-------------YCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFF 58
F F P FF F FF FD + F F F V S +
Sbjct: 5 FFFSPFLFFLFLMFFSFLMFNNYSWSGLFFFFDSFVFVLLIFMMVFILGLVLLSEKNFNL 64
Query: 59 FFFLHLLPLLVLL 71
+LL L+ LL
Sbjct: 65 LILSNLLILICLL 77
Score = 29.1 bits (66), Expect = 7.2
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVL 70
F + FFIF ++ F++ F F+ S+ F LPL+ +
Sbjct: 341 FMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFNNFNVGLSLPLVFM 392
>gnl|CDD|177158 MTH00095, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 527
Score = 37.2 bits (87), Expect = 0.021
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFF--FFFFFVSFSTSSSFFFFFLHLLPLLVLL 71
FFFF+ FI F FF F +F +S F L L+ L VL+
Sbjct: 9 LFFFFFLLLFILFLPFMKLNLFFLEWDFLSLKFNFYFNSLLFSLILLLVTLSVLV 63
Score = 37.2 bits (87), Expect = 0.021
Identities = 16/55 (29%), Positives = 21/55 (38%)
Query: 11 SFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLL 65
+ ++ FF F FF F FFFF + SF +S FL L
Sbjct: 471 NVIYKLKNLKFFDLFLNKFGYKGFNFFSSFSFFFFSYMKSFKYNSLLILLFLIFL 525
Score = 36.0 bits (84), Expect = 0.050
Identities = 16/67 (23%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Query: 5 LQISFTSFLFPPPQFFFFFYCCFFIFDFYF-FFFFFFFFFFFFFFVSFSTSSSFFFFFLH 63
L FL+ F DFY F+ F F FFF + FF+
Sbjct: 407 LVFFSVFFLWWLNFNLLNLPSLFLYLDFYVPLFYLFMIMLFSFFFFKLLFKELKYKFFVD 466
Query: 64 LLPLLVL 70
V+
Sbjct: 467 YFAKNVI 473
Score = 35.7 bits (83), Expect = 0.074
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 29 IFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLL 65
I DF+ F FF F F ++F SFS SS L L
Sbjct: 137 IGDFFIFLFFSGFIFSSYYFFSFSFFSSSMILMLLLT 173
Score = 35.7 bits (83), Expect = 0.076
Identities = 14/57 (24%), Positives = 17/57 (29%)
Query: 9 FTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLL 65
F F P F+ F F F F F + FF +F F L
Sbjct: 429 FLYLDFYVPLFYLFMIMLFSFFFFKLLFKELKYKFFVDYFAKNVIYKLKNLKFFDLF 485
Score = 34.1 bits (79), Expect = 0.19
Identities = 14/57 (24%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 11 SFLFPPPQFFFF-FYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLP 66
+ L P F + FY F F FFFF F F ++ L
Sbjct: 421 NLLNLPSLFLYLDFYVPLFYLFMIMLFSFFFFKLLFKELKYKFFVDYFAKNVIYKLK 477
Score = 33.7 bits (78), Expect = 0.26
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 17/56 (30%)
Query: 27 FFIFDFYFFFFFFFFFF------------FFFFFVSFST-----SSSFFFFFLHLL 65
F F+ Y FF FFF + FF+SFS SSS FL L+
Sbjct: 351 LFFFNNYMIFFSLMFFFSVFLTFGYSYRLWKSFFLSFSKVVNVYSSSVLMNFLSLM 406
Score = 31.8 bits (73), Expect = 0.95
Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 5/74 (6%)
Query: 3 KSLQISFTSFLFPPPQFFFFFYCCFFIFDFYFFF-----FFFFFFFFFFFFVSFSTSSSF 57
KS +SF+ + + + F FF F F ++ F +
Sbjct: 381 KSFFLSFSKVVNVYSSSVLMNFLSLMLVFFSVFFLWWLNFNLLNLPSLFLYLDFYVPLFY 440
Query: 58 FFFFLHLLPLLVLL 71
F + L
Sbjct: 441 LFMIMLFSFFFFKL 454
Score = 31.8 bits (73), Expect = 1.1
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 19 FFFFFYCCFFIFDFYF--FFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLL 71
+ FD + F + F FF F F FS SF + L +L L+ L
Sbjct: 471 NVIYKLKNLKFFDLFLNKFGYKGFNFFSSFSFFFFSYMKSFKYNSLLILLFLIFL 525
Score = 31.4 bits (72), Expect = 1.4
Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 11/58 (18%)
Query: 20 FFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFST------SSSFFFFFLHLLPLLVLL 71
F FF FFF F F F ++ S F F+F LL L+LL
Sbjct: 3 ILIFLILFF-----FFFLLLFILFLPFMKLNLFFLEWDFLSLKFNFYFNSLLFSLILL 55
Score = 31.4 bits (72), Expect = 1.6
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFFFFFV---SFSTSSSFFF 59
FF F + FIF Y+FF F FF + SF+ S+ F F
Sbjct: 140 FFIFLFFSGFIFSSYYFFSFSFFSSSMILMLLLTSFTKSAQFPF 183
Score = 31.0 bits (71), Expect = 2.1
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 36 FFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLL 68
FF F FF F F + S SFF + L+ LL
Sbjct: 140 FFIFLFFSGFIFSSYYFFSFSFFSSSMILMLLL 172
Score = 30.3 bits (69), Expect = 2.8
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 37 FFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVL 70
FF F FF F F S+ S FF +L LL+
Sbjct: 140 FFIFLFFSGFIFSSYYFFSFSFFSSSMILMLLLT 173
Score = 29.9 bits (68), Expect = 4.1
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 27 FFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFL 62
FFIF F+ F F ++FF F F S SS L
Sbjct: 140 FFIFLFFSGFIFSSYYFFSFSFFS---SSMILMLLL 172
Score = 29.5 bits (67), Expect = 5.0
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 7 ISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFF------FFFFFFVSFSTSSSFFFF 60
SF F + + F+ +F + + FF F + F FS+ S FFF
Sbjct: 447 FSFFFFKLLFKELKYKFFVDYFAKNVIYKLKNLKFFDLFLNKFGYKGFNFFSSFSFFFFS 506
Query: 61 FL 62
++
Sbjct: 507 YM 508
Score = 29.1 bits (66), Expect = 6.5
Identities = 10/47 (21%), Positives = 14/47 (29%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLL 65
+ F F F F + FF +F + FF L
Sbjct: 440 YLFMIMLFSFFFFKLLFKELKYKFFVDYFAKNVIYKLKNLKFFDLFL 486
>gnl|CDD|177159 MTH00097, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 121
Score = 34.9 bits (81), Expect = 0.028
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 15 PPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLL 71
P FF F FF F FYFF +FF F + FF+ L LL +
Sbjct: 50 PYLVFFSLFLSMFFFFFFYFFKVYFFSNLSLNVFELYYNIFWLIVFFI-LFVLLFFM 105
Score = 29.5 bits (67), Expect = 1.8
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 10/61 (16%)
Query: 8 SFTSFLFPPPQFFFFFYCCFFI--------FDFYFFFFFF--FFFFFFFFFVSFSTSSSF 57
F S F +FF Y + ++ ++ FF F FF F+S+ + S
Sbjct: 57 LFLSMFFFFFFYFFKVYFFSNLSLNVFELYYNIFWLIVFFILFVLLFFMNFISYFLNFSG 116
Query: 58 F 58
Sbjct: 117 A 117
>gnl|CDD|216554 pfam01529, zf-DHHC, DHHC palmitoyltransferase. This family
includes the well known DHHC zinc binding domain as well
as three of the four conserved transmembrane regions
found in this family of palmitoyltransferase enzymes.
Length = 167
Score = 35.1 bits (81), Expect = 0.037
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 7 ISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSF 51
+SF ++ FF+ +F FF F F+ F
Sbjct: 104 LSFYYLVYLIRNIELFFFLILSLFSSIILLVLSLFFLLFLSFLLF 148
Score = 35.1 bits (81), Expect = 0.043
Identities = 12/52 (23%), Positives = 14/52 (26%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVL 70
F+ + FFF F S FF L L LL
Sbjct: 98 LILLLVLSFYYLVYLIRNIELFFFLILSLFSSIILLVLSLFFLLFLSFLLFF 149
Score = 34.4 bits (79), Expect = 0.067
Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 9/67 (13%)
Query: 18 QFFFFFYCCFFIFDFYFFFFFFFFF---------FFFFFFVSFSTSSSFFFFFLHLLPLL 68
++F F ++ F++ FFF FS+ LL L
Sbjct: 85 KYFLLFLLYLTLYLILLLVLSFYYLVYLIRNIELFFFLILSLFSSIILLVLSLFFLLFLS 144
Query: 69 VLLPLQI 75
LL +
Sbjct: 145 FLLFFHL 151
>gnl|CDD|220693 pfam10325, 7TM_GPCR_Srz, Serpentine type 7TM GPCR chemoreceptor
Srz. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srz is a solo families
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'. The genes encoding Srz appear to be under
strong adaptive evolutionary pressure.
Length = 266
Score = 36.0 bits (84), Expect = 0.040
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 5/63 (7%)
Query: 3 KSLQISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFL 62
K ++I++ F+F F F F F F F + F +
Sbjct: 45 KMVKITYFLFIF-----LIIFLILIFFFTKNSIIGFLFLLLLFLILYILYIITQVFHLLI 99
Query: 63 HLL 65
LL
Sbjct: 100 FLL 102
Score = 35.6 bits (83), Expect = 0.044
Identities = 18/85 (21%), Positives = 22/85 (25%), Gaps = 28/85 (32%)
Query: 19 FFFFFYCCFFIFDFY----------------------------FFFFFFFFFFFFFFFVS 50
IF FY +F F F F +
Sbjct: 6 LIVLLIIYLLIFPFYVYVFKLNRERDKKTLLFPITNHFYKMVKITYFLFIFLIIFLILIF 65
Query: 51 FSTSSSFFFFFLHLLPLLVLLPLQI 75
F T +S F LL L+L L I
Sbjct: 66 FFTKNSIIGFLFLLLLFLILYILYI 90
Score = 33.7 bits (78), Expect = 0.19
Identities = 10/50 (20%), Positives = 17/50 (34%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLL 68
+ ++ Y F + D F + F F FL++L L
Sbjct: 129 YIWYLYLVFVLKDIILFLLYVLSFSKDLSTEILELFYLITFIFLNILLFL 178
Score = 31.4 bits (72), Expect = 0.95
Identities = 16/63 (25%), Positives = 19/63 (30%), Gaps = 10/63 (15%)
Query: 12 FLFPPPQFFF----FFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPL 67
LFP F+ Y F F F FFF S FL L L
Sbjct: 35 LLFPITNHFYKMVKITYFLFI------FLIIFLILIFFFTKNSIIGFLFLLLLFLILYIL 88
Query: 68 LVL 70
++
Sbjct: 89 YII 91
>gnl|CDD|214458 MTH00206, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 450
Score = 36.5 bits (85), Expect = 0.041
Identities = 14/63 (22%), Positives = 17/63 (26%), Gaps = 3/63 (4%)
Query: 12 FLFPPPQFFFFFYCC---FFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLL 68
L P + FF F F +F S SF +L PL
Sbjct: 2 ILIPLIMLLLMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFSNLYLSYDPLS 61
Query: 69 VLL 71
L
Sbjct: 62 SPL 64
Score = 31.8 bits (73), Expect = 1.1
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 33 YFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVL 70
Y F FF S + + F L+P L+L
Sbjct: 94 YITLLIVLQLFLILFFSSSNLLLFYILFEASLIPTLLL 131
Score = 30.7 bits (70), Expect = 2.3
Identities = 9/63 (14%), Positives = 18/63 (28%)
Query: 9 FTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLL 68
+ L + F+ F +F + + F + S L +L
Sbjct: 11 LMTILSKKKWLWRSTTFFSFLIALLFLLWFKWSSEVGWSFSNLYLSYDPLSSPLVILSCW 70
Query: 69 VLL 71
+L
Sbjct: 71 LLP 73
Score = 29.5 bits (67), Expect = 4.9
Identities = 14/81 (17%), Positives = 21/81 (25%), Gaps = 26/81 (32%)
Query: 14 FPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFF----------FFFVSFSTSSS------- 56
PP F F I + + F + FV +
Sbjct: 365 LPP--FPNLFGELLIITSLFSWSNFTLPLLGLGFLFTAIYSLYMFVMTQHGKTPNHLLSL 422
Query: 57 -------FFFFFLHLLPLLVL 70
FLHL P+++L
Sbjct: 423 SPSSTREHLLLFLHLFPVILL 443
>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal
transduction mechanisms].
Length = 365
Score = 35.5 bits (82), Expect = 0.060
Identities = 8/67 (11%), Positives = 11/67 (16%), Gaps = 1/67 (1%)
Query: 7 ISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSS-SFFFFFLHLL 65
+ L +F F F + L
Sbjct: 18 LLLLLILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLLILILVLLLLILAWLGL 77
Query: 66 PLLVLLP 72
P L L
Sbjct: 78 PGLSLGF 84
Score = 34.4 bits (79), Expect = 0.14
Identities = 7/64 (10%), Positives = 13/64 (20%)
Query: 13 LFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLLP 72
LF F I + + + L ++L
Sbjct: 48 LFDLRLQVLGFLLLILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILF 107
Query: 73 LQIE 76
L +
Sbjct: 108 LLLL 111
Score = 34.0 bits (78), Expect = 0.21
Identities = 16/103 (15%), Positives = 25/103 (24%), Gaps = 7/103 (6%)
Query: 3 KSLQISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFL 62
LQ+ L + FF F + V + F L
Sbjct: 51 LRLQVLGFLLLILILVLLLLILAWLGLPGLSLGFFILIFLLIYLLGVRGFALALILFLLL 110
Query: 63 HLLPLLVLLPLQ---IEPRLMPRFPLFQQLTLREGAQVFEMWR 102
L L+LL L + L + + E +
Sbjct: 111 LLAIALILLALFLLLLALVLATLIAILL----LLEGVIRERAK 149
Score = 31.3 bits (71), Expect = 1.5
Identities = 11/76 (14%), Positives = 19/76 (25%), Gaps = 2/76 (2%)
Query: 1 MKKSLQISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFF--FFFFFFFFVSFSTSSSFF 58
+ SL + T F F + F
Sbjct: 23 ILLSLGLILTLISGLLILFLALVIALFDLRLQVLGFLLLILILVLLLLILAWLGLPGLSL 82
Query: 59 FFFLHLLPLLVLLPLQ 74
FF+ + L+ LL ++
Sbjct: 83 GFFILIFLLIYLLGVR 98
>gnl|CDD|239583 cd03506, Delta6-FADS-like, The Delta6 Fatty Acid Desaturase
(Delta6-FADS)-like CD includes the integral-membrane
enzymes: delta-4, delta-5, delta-6, delta-8,
delta-8-sphingolipid, and delta-11 desaturases found in
vertebrates, higher plants, fungi, and bacteria. These
desaturases are required for the synthesis of highly
unsaturated fatty acids (HUFAs), which are mainly
esterified into phospholipids and contribute to
maintaining membrane fluidity. While HUFAs may be
required for cold tolerance in bacteria, plants and
fish, the primary role of HUFAs in mammals is cell
signaling. These enzymes are described as front-end
desaturases because they introduce a double bond between
the pre-exiting double bond and the carboxyl (front) end
of the fatty acid. Various substrates are involved, with
both acyl-coenzyme A (CoA) and acyl-lipid desaturases
present in this CD. Acyl-lipid desaturases are localized
in the membranes of cyanobacterial thylakoid, plant
endoplasmic reticulum (ER), and plastid; and acyl-CoA
desaturases are present in ER membrane. ER-bound plant
acyl-lipid desaturases and acyl-CoA desaturases require
cytochrome b5 as an electron donor. Most of the
eukaryotic desaturase domains have an adjacent
N-terminal cytochrome b5-like domain. This domain family
has extensive hydrophobic regions that would be capable
of spanning the membrane bilayer at least twice.
Comparison of sequences also reveals the existence of
three regions of conserved histidine cluster motifs that
contain the residues: HXXXH, HXX(X)HH, and Q/HXXHH.
These histidine residues are reported to be
catalytically essential and proposed to be the ligands
for the iron atoms contained within the homolog,
stearoyl CoA desaturase.
Length = 204
Score = 34.5 bits (80), Expect = 0.075
Identities = 8/55 (14%), Positives = 14/55 (25%), Gaps = 4/55 (7%)
Query: 9 FTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLH 63
+ F Q F + + ++FF F V + F
Sbjct: 79 RSEPAFGKDQKKRFLH----RYQHFYFFPLLALLLLAFLVVQLAGGLWLAVVFQL 129
Score = 29.1 bits (66), Expect = 5.3
Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 7/57 (12%)
Query: 13 LFPPPQFFFFFYCCFFIFDFYFFFF-----FFFFFFFFFFFVSFSTSSSFFFFFLHL 64
+ P F D F F+FF ++F +L +
Sbjct: 71 IDTLPLLARSEP--AFGKDQKKRFLHRYQHFYFFPLLALLLLAFLVVQLAGGLWLAV 125
>gnl|CDD|214457 MTH00205, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 448
Score = 35.3 bits (82), Expect = 0.082
Identities = 15/63 (23%), Positives = 22/63 (34%)
Query: 7 ISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLP 66
S LF + F+ + +F FFF F F+S S S L +L
Sbjct: 7 FSLLIILFVLKFKDWSFFSNLLLIGLFFSSFFFSNSFLMTSFISSSFSFDSLSLPLIMLS 66
Query: 67 LLV 69
+
Sbjct: 67 FWI 69
Score = 31.9 bits (73), Expect = 0.96
Identities = 13/49 (26%), Positives = 16/49 (32%)
Query: 21 FFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLV 69
F F F F F F F S S F++ LL +L
Sbjct: 28 LLIGLFFSSFFFSNSFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLA 76
Score = 30.3 bits (69), Expect = 2.6
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 32 FYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLLPL 73
F+ F FF F ++FS F ++ +L LV LP+
Sbjct: 160 FFLNSLNFSLSMFFNFPLNFSDFYLFLYWIFLMLAFLVKLPM 201
Score = 28.8 bits (65), Expect = 9.5
Identities = 19/65 (29%), Positives = 22/65 (33%), Gaps = 13/65 (20%)
Query: 19 FFFFFYCCFFIFDFYFFFFFF-----------FFFFFFFFFVSFSTSS-SFFFFFLHL-L 65
F I F F + FF FFF TS S F F L L
Sbjct: 1 MSIFGVFSLLIILFVLKFKDWSFFSNLLLIGLFFSSFFFSNSFLMTSFISSSFSFDSLSL 60
Query: 66 PLLVL 70
PL++L
Sbjct: 61 PLIML 65
>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl
glycosylphosphotransferase. Members of this family are
generally found near other genes involved in the
biosynthesis of a variety of exopolysaccharides. These
proteins consist of two fused domains, an N-terminal
hydrophobic domain of generally low conservation and a
highly conserved C-terminal sugar transferase domain
(pfam02397). Characterized and partially characterized
members of this subfamily include Salmonella WbaP
(originally RfbP) , E. coli WcaJ , Methylobacillus EpsB,
Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B
Streptococcus CpsE (originally CpsD), and Streptococcus
suis Cps2E. Each of these is believed to act in
transferring the sugar from, for instance, UDP-glucose
or UDP-galactose, to a lipid carrier such as
undecaprenyl phosphate as the first (priming) step in
the synthesis of an oligosaccharide "block". This
function is encoded in the C-terminal domain. The
liposaccharide is believed to be subsequently
transferred through a "flippase" function from the
cytoplasmic to the periplasmic face of the inner
membrane by the N-terminal domain. Certain closely
related transferase enzymes such as Sinorhizobium ExoY
and Lactococcus EpsD lack the N-terminal domain and are
not found by this model.
Length = 445
Score = 34.9 bits (81), Expect = 0.11
Identities = 11/71 (15%), Positives = 15/71 (21%), Gaps = 18/71 (25%)
Query: 19 FFFFFYCCFFIFDFY------------------FFFFFFFFFFFFFFFVSFSTSSSFFFF 60
F F Y + F F F S
Sbjct: 36 ILLLFLILFAASGLYRSWRGRSLLEELARVLLAWLLVFLLLLALAFLLKGFDFSRLVLLL 95
Query: 61 FLHLLPLLVLL 71
+ L +L+LL
Sbjct: 96 WFVLALVLLLL 106
>gnl|CDD|214442 MTH00160, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 335
Score = 34.8 bits (81), Expect = 0.12
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 4 SLQISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLH 63
S+ IS +L +F Y + F F FF F + + F FL+
Sbjct: 185 SMMISENLWLI-----YFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLN 239
Query: 64 LLPL 67
LL L
Sbjct: 240 LLSL 243
Score = 29.8 bits (68), Expect = 4.2
Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 7/57 (12%)
Query: 5 LQISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFF 61
L+IS++S + + + F F F F S F
Sbjct: 286 LRISYSSLMLNYNKNKWNLKKKKNKFSLILNFLSFISLFGLILS-------SLLFLL 335
Score = 29.4 bits (67), Expect = 5.6
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 32 FYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHL-LPLLVLLPL 73
F +S S S+S+F ++ L + LL +PL
Sbjct: 3 MNSSKLLFLSTLIMGTLISIS-SNSWFGAWMGLEINLLSFIPL 44
>gnl|CDD|213781 TIGR03170, flgA_cterm, flagella basal body P-ring formation protein
FlgA. This model describes a conserved C-terminal
region of the flagellar basal body P-ring formation
protein FlgA. This sequence region contains a SAF
domain, now described by pfam08666 [Cellular processes,
Chemotaxis and motility].
Length = 122
Score = 32.9 bits (76), Expect = 0.12
Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 16/73 (21%)
Query: 188 MLTWEKVDLSFLPNGSVTFNQRKVFRFDPDQSVGSEDDVVIVPNIPMLKNGTSK------ 241
L E+ DL+ LP G +T DPD+ VG + P+ N
Sbjct: 18 DLKLERGDLARLPGGVLT---------DPDEVVGKVAKRPLRAGQPLTANMLRPPWLVKR 68
Query: 242 -DNVTVFTGENGI 253
D VTV G+
Sbjct: 69 GDTVTVIARGGGL 81
>gnl|CDD|219521 pfam07695, 7TMR-DISM_7TM, 7TM diverse intracellular signalling.
This entry represents the transmembrane region of the
7TM-DISM (7TM Receptors with Diverse Intracellular
Signalling Modules).
Length = 207
Score = 33.8 bits (78), Expect = 0.16
Identities = 10/55 (18%), Positives = 14/55 (25%), Gaps = 7/55 (12%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFF-------FFFFFFFFVSFSTSSSFFFFFLHLLP 66
FY Y F FF ++ + S F +L P
Sbjct: 4 LLGLFYGILLALALYNLFLFFSLRDRSYLYYVLYILSFLLYQLSLNGLGFQYLWP 58
Score = 28.4 bits (64), Expect = 9.7
Identities = 5/52 (9%), Positives = 10/52 (19%)
Query: 11 SFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFL 62
SFL + F + + + + F
Sbjct: 87 SFLELKKYLPRLDRLLLGLALLLLLLLLLAPLFPYTLSLRLAQLLALLFILF 138
>gnl|CDD|236549 PRK09528, lacY, galactoside permease; Reviewed.
Length = 420
Score = 34.1 bits (79), Expect = 0.19
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 37 FFFFFFFFFFFFVSFSTSSSFFFFFLH 63
++ F FFFFFF +S+ SFF +LH
Sbjct: 12 YWIFSLFFFFFFFIWSSWFSFFPIWLH 38
>gnl|CDD|225105 COG2194, COG2194, Predicted membrane-associated, metal-dependent
hydrolase [General function prediction only].
Length = 555
Score = 33.9 bits (78), Expect = 0.23
Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Query: 1 MKKSLQISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFF 60
K SL ++ F F FF F I F F F F F+ SF
Sbjct: 11 TKLSL-SLLLAWYFLLLLNFAFFLQVFLINSLDLSFSFSFLLALVFAFLLLLLLLSFPRL 69
Query: 61 FLHLLPLLVLL 71
L +L L+
Sbjct: 70 LKPLAGVLSLV 80
Score = 30.0 bits (68), Expect = 4.3
Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 2/51 (3%)
Query: 11 SFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFF 61
SF F F + + F VS + S +F+
Sbjct: 44 SFSFSFLLALVFAF--LLLLLLLSFPRLLKPLAGVLSLVSAAASYFAYFYG 92
>gnl|CDD|224203 COG1284, COG1284, Uncharacterized conserved protein [Function
unknown].
Length = 289
Score = 33.7 bits (78), Expect = 0.23
Identities = 11/53 (20%), Positives = 16/53 (30%)
Query: 20 FFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLLP 72
F FF+ + F + F +S FL L L +L
Sbjct: 57 IPPFGLTFFLLNIPLFILGYKKIGKRFTLLSTIIGVLLLSLFLWLFQRLPVLT 109
>gnl|CDD|214460 MTH00212, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 160
Score = 32.7 bits (75), Expect = 0.24
Identities = 8/55 (14%), Positives = 15/55 (27%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLLPL 73
+F F + Y F + + +P+L+ L L
Sbjct: 82 YFKGFGMILISLNLYLLLMTLGSSNFSPMLNLKLELNVSKILSNNNIPILLFLGL 136
>gnl|CDD|177152 MTH00087, ATP6, ATP synthase F0 subunit 6; Provisional.
Length = 195
Score = 32.6 bits (75), Expect = 0.29
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 32 FYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLL 65
F+ F F F + + S + F LL
Sbjct: 5 FFLDVFMFVFLLQYLLYFKESMLNVLVKKFFGLL 38
Score = 31.9 bits (73), Expect = 0.56
Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 11/62 (17%)
Query: 18 QFFFFFYCCFFIFDFYFFFF------FFFFFFFFFFFVSFSTS-----SSFFFFFLHLLP 66
Q FF F Y +F FF + FS S SS FF ++
Sbjct: 3 QVFFLDVFMFVFLLQYLLYFKESMLNVLVKKFFGLLIIVFSYSNKLPLSSVISFFTFIVL 62
Query: 67 LL 68
LL
Sbjct: 63 LL 64
Score = 31.1 bits (71), Expect = 1.1
Identities = 10/47 (21%), Positives = 16/47 (34%)
Query: 27 FFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLLPL 73
F D + F F + +F + FF + + LPL
Sbjct: 4 VFFLDVFMFVFLLQYLLYFKESMLNVLVKKFFGLLIIVFSYSNKLPL 50
Score = 29.2 bits (66), Expect = 4.2
Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 5/65 (7%)
Query: 3 KSLQISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFF-----FFFFFFVSFSTSSSF 57
L I F+ P F+ + F F F + F F F + S
Sbjct: 36 GLLIIVFSYSNKLPLSSVISFFTFIVLLLFCFGGLFPYSFSPCGMVEFTFLYALVAWLST 95
Query: 58 FFFFL 62
F FL
Sbjct: 96 FLSFL 100
>gnl|CDD|177218 MTH00162, ND4L, NADH dehydrogenase subunit 4L; Provisional.
Length = 89
Score = 31.3 bits (72), Expect = 0.29
Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 11/55 (20%)
Query: 19 FFFFFYCCFFIFDFYFFFFF-----------FFFFFFFFFFVSFSTSSSFFFFFL 62
F F F+ +F FF F + F+ F FFL
Sbjct: 7 FLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLLFLYLSFFNYELYFLLFFL 61
Score = 28.6 bits (65), Expect = 2.0
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 26 CFFIFDFYFFFFFFFFFFFFFFFV 49
FF+ Y FF + +F FF
Sbjct: 39 LFFLLFLYLSFFNYELYFLLFFLT 62
Score = 28.6 bits (65), Expect = 2.3
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 3/35 (8%)
Query: 37 FFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLL 71
F F FF F HLL +L+ L
Sbjct: 1 MMMLLIFLFMFFSGL---LVFLSKRKHLLLMLLSL 32
Score = 28.6 bits (65), Expect = 2.3
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 20 FFFFYCCFFIFDFYFFFFFFFFFF 43
FF + F++ +F FF F
Sbjct: 40 FFLLFLYLSFFNYELYFLLFFLTF 63
Score = 28.6 bits (65), Expect = 2.4
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFF 41
F F Y FF ++ YF FF F
Sbjct: 41 FLLFLYLSFFNYELYFLLFFLTF 63
>gnl|CDD|177241 MTH00193, ND1, NADH dehydrogenase subunit 1; Provisional.
Length = 306
Score = 33.2 bits (77), Expect = 0.33
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 19 FFFFFYCCFFI-FDFYFFFFFFFFFFFFFFFV 49
F + F+ D F+ F F F+
Sbjct: 235 FMSMLFVLMFLGGDLLSLLFYLKLLFISFLFI 266
Score = 32.8 bits (76), Expect = 0.42
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFF 59
F I F F + + +F F SF +F
Sbjct: 149 ALILLSFIFLIGSFNLLDFMNYQKYIWFIFFSFPLFLIWFV 189
Score = 30.9 bits (71), Expect = 1.6
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 9 FTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVS 50
+ + F P F + I+ + F F FF S
Sbjct: 70 YLLYYFSPVFSLFLSLLIWLIYPYLFNLISFNLGILFFLCCS 111
Score = 30.5 bits (70), Expect = 2.5
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 4 SLQISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVS 50
SL + SF+F F F + Y +F FF F F +FVS
Sbjct: 147 SLALILLSFIFLIGSFNLLD---FMNYQKYIWFIFFSFPLFLIWFVS 190
Score = 29.4 bits (67), Expect = 5.5
Identities = 17/77 (22%), Positives = 21/77 (27%), Gaps = 22/77 (28%)
Query: 7 ISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFF------------------F 48
I F S LF F FY F F F + F
Sbjct: 233 ILFMSMLFV----LMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSF 288
Query: 49 VSFSTSSSFFFFFLHLL 65
+ S + FFF L +
Sbjct: 289 LPLSLNYLLFFFGLKIF 305
>gnl|CDD|144594 pfam01059, Oxidored_q5_N, NADH-ubiquinone oxidoreductase chain 4,
amino terminus.
Length = 110
Score = 31.3 bits (72), Expect = 0.38
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 5/67 (7%)
Query: 9 FTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSS---SFFFFFLH-- 63
+FL P + + F + +S+ S+ L
Sbjct: 13 PLTFLSKPKWLWTTSTLYSLLLALLSLLLLNNPSNFSWSNLSYFLGIDSLSYPLIILSCW 72
Query: 64 LLPLLVL 70
LLPL++L
Sbjct: 73 LLPLMIL 79
>gnl|CDD|224900 COG1989, PulO, Type II secretory pathway, prepilin signal peptidase
PulO and related peptidases [Cell motility and secretion
/ Posttranslational modification, protein turnover,
chaperones / Intracellular trafficking and secretion].
Length = 254
Score = 32.8 bits (75), Expect = 0.44
Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 4/59 (6%)
Query: 19 FFFFFYCCFFIFDFYF----FFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLLPL 73
+ F F + +SF + S LLP L+ LPL
Sbjct: 72 IRYPLVELLTGVLFLLLKILPFGWGVLLIGLLVLISFLLALSLIDLDTQLLPDLLTLPL 130
>gnl|CDD|222537 pfam14093, DUF4271, Domain of unknown function (DUF4271). This
family of integral membrane proteins is functionally
uncharacterized. This family of proteins is found in
bacteria. Proteins in this family are typically between
221 and 326 amino acids in length.
Length = 207
Score = 32.2 bits (74), Expect = 0.44
Identities = 15/70 (21%), Positives = 19/70 (27%), Gaps = 13/70 (18%)
Query: 12 FLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFF------VSFSTSSSFFFFFLHL- 64
LFP Y F + F SF +F L+L
Sbjct: 135 LLFPL--VLLLVYFDSLSFYIAVIILLIILLLGKILLLYKYYKIFFRKLFSFLYFILYLC 192
Query: 65 ----LPLLVL 70
PLL+L
Sbjct: 193 ALEIAPLLIL 202
>gnl|CDD|204437 pfam10292, 7TM_GPCR_Srab, Serpentine type 7TM GPCR receptor class
ab chemoreceptor. Chemoreception is mediated in
Caenorhabditis elegans by members of the
seven-transmembrane G-protein-coupled receptor class
(7TM GPCRs) of proteins which are of the serpentine
type. Srab is part of the Sra superfamily of
chemoreceptors. Chemoperception is one of the central
senses of soil nematodes like C. elegans which are
otherwise 'blind' and 'deaf'. The expression pattern of
the srab genes is biologically intriguing. Of the six
promoters successfully expressed in transgenic
organisms, one was exclusively expressed in the tail
phasmid neurons, two were exclusively expressed in a
head amphid neuron, and two were expressed both in the
head and tail neurons as well as a limited number of
other cells.
Length = 323
Score = 32.6 bits (75), Expect = 0.46
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 33 YFFFFFFFFFFFFFFFVSFSTSSSFFFFFL---HLLPL 67
F F F F S S +F + H LPL
Sbjct: 242 TIFVVIQITGFLFLHFFGSSMSKPTYFALIELNHCLPL 279
>gnl|CDD|214414 MTH00063, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 522
Score = 32.9 bits (76), Expect = 0.53
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 26 CFFIFDFYFFFFFF--FFFFFFFFFVSFSTSSSFFF 59
C F+ + F FFF + F+ S+SF F
Sbjct: 141 CLFLLIGLSCWGGSGSFLCCLFFFLIVFTKSASFPF 176
Score = 30.2 bits (69), Expect = 3.6
Identities = 12/55 (21%), Positives = 15/55 (27%)
Query: 21 FFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLLPLQI 75
+F F F+SF S F + VLL L I
Sbjct: 2 VLLVSLLLCLLIFFLFLVGVSSSVSLNFLSFGGYSWLINFDFDYVTFGVLLMLLI 56
>gnl|CDD|191610 pfam06799, DUF1230, Protein of unknown function (DUF1230). This
family consists of several hypothetical plant and
photosynthetic bacterial proteins of around 160
residues in length. The function of this family is
unknown although looking at the species distribution
the protein may play a part in photosynthesis.
Length = 145
Score = 31.4 bits (72), Expect = 0.53
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 10/62 (16%)
Query: 20 FFFFYCCFFIFDFYFFFFFFFFFFFFFFFV----SFSTSSSFFFFFLH------LLPLLV 69
+FF + +Y + F F SF S L L+PLL+
Sbjct: 20 WFFSWPTLEKKGYYRKLLKIWLISFPVFGPIASGSFPLRKSPLRLILSAALGALLIPLLI 79
Query: 70 LL 71
LL
Sbjct: 80 LL 81
>gnl|CDD|177136 MTH00064, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 151
Score = 31.4 bits (72), Expect = 0.59
Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Query: 9 FTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSS---SFFFFFLHLL 65
F S P F + F+FFF F+ V+ S + +L
Sbjct: 68 FVSVFSPNSSFVSYSNLGELGVFFFFFFGLLLCVLVFYSLVNVEFSFYLCTSSEGVFYLF 127
Query: 66 PLLVLL 71
LVL+
Sbjct: 128 LCLVLM 133
>gnl|CDD|217505 pfam03348, Serinc, Serine incorporator (Serinc). This is a family
of eukaryotic membrane proteins which incorporate serine
into membranes and facilitate the synthesis of the
serine-derived lipids phosphatidylserine and
sphingolipid. Members of this family contain 11
transmembrane domains and form intracellular complexes
with key enzymes involved in serine and sphingolipid
biosynthesis.
Length = 428
Score = 32.6 bits (75), Expect = 0.60
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 27 FFIFDFYFFFFFFFFF----FFFFFFVSFSTSSSFFFFFLHLLPLLV 69
FF FF FFFF ++ SF F + L+ LLV
Sbjct: 112 FFKILLLIGLIVGAFFIPNGFFFFVWMYIGVIGSFLFILIQLI-LLV 157
>gnl|CDD|214445 MTH00166, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 160
Score = 31.3 bits (72), Expect = 0.60
Identities = 13/64 (20%), Positives = 19/64 (29%)
Query: 7 ISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLP 66
S F F F + + + F F F S S S + F +L
Sbjct: 71 ASNEKFKFSLKLLILFLLMLLLMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLI 130
Query: 67 LLVL 70
L +
Sbjct: 131 TLFM 134
>gnl|CDD|177154 MTH00091, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 273
Score = 32.1 bits (74), Expect = 0.66
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 7/58 (12%)
Query: 20 FFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSS-------SFFFFFLHLLPLLVL 70
F +F + F F+ +S FFFFFL L+ L ++
Sbjct: 216 ILKVLGFFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFKYNKGFFFFFLPLMLLSLI 273
Score = 31.4 bits (72), Expect = 1.0
Identities = 15/55 (27%), Positives = 22/55 (40%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLLPL 73
F + FF F FF FF++F F F+ + F L + + LP
Sbjct: 148 FNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKFNNVNKLNFVSWETLLVFMNLPF 202
Score = 29.5 bits (67), Expect = 4.2
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 18 QFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFL 62
QFF + +F FF F + + S++ SF + L
Sbjct: 109 QFFSKNFFFLLLFGLLICFFQMFLLKSYKNLLILSSTESFNWLIL 153
Score = 29.5 bits (67), Expect = 4.3
Identities = 7/41 (17%), Positives = 11/41 (26%)
Query: 22 FFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFL 62
+ + F FFF F F S+ +
Sbjct: 101 LPFLLVLLQFFSKNFFFLLLFGLLICFFQMFLLKSYKNLLI 141
Score = 29.5 bits (67), Expect = 4.6
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 8/52 (15%)
Query: 28 FIFDFYFFFFFFFFFFFFFFFVSFST--------SSSFFFFFLHLLPLLVLL 71
F F F F F+ V+ ST + FFFF L LL L+
Sbjct: 222 FFLLFLLFLMFLSVLSLSFWLVNLSTKLFLMLFKYNKGFFFFFLPLMLLSLI 273
Score = 28.7 bits (65), Expect = 7.0
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 12 FLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFL 62
P FF F + + FF F F F+S S SF+ L
Sbjct: 196 VFMNLPFSVTFFVKIFSLSEILKVLGFFLLFLLFLMFLSV-LSLSFWLVNL 245
>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell
wall biogenesis [Cell envelope biogenesis, outer
membrane].
Length = 439
Score = 32.2 bits (73), Expect = 0.66
Identities = 7/65 (10%), Positives = 11/65 (16%)
Query: 9 FTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLL 68
L F + F L +L
Sbjct: 297 LFRPLSGYRFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALLLANVILAAFLLIL 356
Query: 69 VLLPL 73
++ PL
Sbjct: 357 LIPPL 361
Score = 32.2 bits (73), Expect = 0.81
Identities = 12/111 (10%), Positives = 26/111 (23%), Gaps = 6/111 (5%)
Query: 8 SFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPL 67
+F + F +S + L L
Sbjct: 295 PALFRPLSGYRFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALLLANVILAAFLL 354
Query: 68 LVLLPLQIEPRLMPRFPLFQQLTLREGAQVFEMWRKPPVHPVIRIFIYNVT 118
++L+P + + + +F T V ++ I I +
Sbjct: 355 ILLIPPLLALFALLQLGVFLVTTKG------LRLIAKLVVYLLVILIIFLP 399
Score = 30.7 bits (69), Expect = 2.6
Identities = 10/60 (16%), Positives = 17/60 (28%)
Query: 21 FFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLLPLQIEPRLM 80
+ F + F F F L ++P L+L+ L L+
Sbjct: 284 GLQVLLLHPYLPALFRPLSGYRFILLLFSLLLPLLLTLLFLLSIIPSLLLILLSGLLALL 343
>gnl|CDD|214437 MTH00152, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 163
Score = 31.4 bits (72), Expect = 0.69
Identities = 16/46 (34%), Positives = 19/46 (41%)
Query: 13 LFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFF 58
L P P F F FF + F FFFF + + S SS F
Sbjct: 71 LSPNPLFGSNFKFVFFSLTLFGFLGLFFFFLYLYSSGGLSLSSLFD 116
Score = 29.9 bits (68), Expect = 2.4
Identities = 10/54 (18%), Positives = 16/54 (29%)
Query: 7 ISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFF 60
F FF F+ F+FF + + + +S S F
Sbjct: 72 SPNPLFGSNFKFVFFSLTLFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSFG 125
>gnl|CDD|217907 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily.
This superfamily includes fatty acid and carotene
hydroxylases and sterol desaturases. Beta-carotene
hydroxylase is involved in zeaxanthin synthesis by
hydroxylating beta-carotene, but the enzyme may be
involved in other pathways. This family includes C-5
sterol desaturase and C-4 sterol methyl oxidase. Members
of this family are involved in cholesterol biosynthesis
and biosynthesis a plant cuticular wax. These enzymes
contain two copies of a HXHH motif. Members of this
family are integral membrane proteins.
Length = 114
Score = 30.6 bits (69), Expect = 0.74
Identities = 10/66 (15%), Positives = 16/66 (24%), Gaps = 2/66 (3%)
Query: 9 FTSFLFPPPQFFF--FFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLP 66
T+F F P + + F + S + LL
Sbjct: 41 LTAFRFHPLEALLLALIPLLLLLLLFGLHLLVILLGLLLGTLLYLFIHSGLHLWLPPLLS 100
Query: 67 LLVLLP 72
L + P
Sbjct: 101 YLFVTP 106
>gnl|CDD|214448 MTH00173, ATP6, ATP synthase F0 subunit 6; Provisional.
Length = 231
Score = 31.8 bits (73), Expect = 0.74
Identities = 10/44 (22%), Positives = 11/44 (25%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFL 62
F F F + FFF S SSS
Sbjct: 6 FSSFDDHNSSFSSLSFLMWLLSLMSLFFFSSSVWVSSSNLSSVF 49
>gnl|CDD|215958 pfam00507, Oxidored_q4, NADH-ubiquinone/plastoquinone
oxidoreductase, chain 3.
Length = 102
Score = 30.2 bits (69), Expect = 0.75
Identities = 9/43 (20%), Positives = 10/43 (23%), Gaps = 1/43 (2%)
Query: 21 FFFYCCFF-IFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFL 62
FF F IFD + F F L
Sbjct: 45 FFLIAILFLIFDVEIILLLPWAVVFNGLGFLSFVEMFLFLLIL 87
Score = 27.5 bits (62), Expect = 7.7
Identities = 4/31 (12%), Positives = 5/31 (16%)
Query: 21 FFFYCCFFIFDFYFFFFFFFFFFFFFFFVSF 51
F F F F +
Sbjct: 61 LLLPWAVVFNGLGFLSFVEMFLFLLILLLGL 91
>gnl|CDD|177153 MTH00090, ND1, NADH dehydrogenase subunit 1; Provisional.
Length = 284
Score = 31.8 bits (73), Expect = 0.84
Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 4 SLQISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFF 59
L S SFL P F Y +F+ YFF F F + FF S
Sbjct: 59 PLNSSDLSFLLVPGVSFVVMYLEWFVL-PYFFDFLSFEYSLLFFLCLIGFSVYTTL 113
Score = 29.9 bits (68), Expect = 3.7
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 4 SLQISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFV 49
S +I+F+ +L + F F F F + F +
Sbjct: 137 SYEIAFSLYLL-----SIMLHNNSFSFVSSFSLSLFVIYLPFLIMI 177
>gnl|CDD|222228 pfam13567, DUF4131, Domain of unknown function (DUF4131). This
domain is frequently found to the N-terminus of the
Competence domain, pfam03772.
Length = 173
Score = 31.2 bits (71), Expect = 0.92
Identities = 3/60 (5%), Positives = 7/60 (11%)
Query: 7 ISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLP 66
I L P + + + +
Sbjct: 4 ILLADLLSLPLPLWLLLALLALLLLLLLYRRKRRRTLLLLLLLLLLGGLGLGLRAYRRAA 63
>gnl|CDD|222059 pfam13346, ABC2_membrane_5, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 206
Score = 31.1 bits (71), Expect = 0.99
Identities = 7/63 (11%), Positives = 16/63 (25%), Gaps = 8/63 (12%)
Query: 19 FFFFFYCCFFIFDFYFFF--------FFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVL 70
+ Y+ F F F + + ++ LL++
Sbjct: 124 LIIALIFGAILLPLYYKFGYEKGRIILIIIIFLIIFIIFAIFKILNLILSLINNSSLLLI 183
Query: 71 LPL 73
+ L
Sbjct: 184 IIL 186
Score = 28.4 bits (64), Expect = 8.6
Identities = 11/56 (19%), Positives = 15/56 (26%), Gaps = 1/56 (1%)
Query: 20 FFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLLPLQI 75
F I F F F +S + L+ +LLPL
Sbjct: 85 FSLILGLIGII-ISFLIAFIVSLIFGNITISELLLILLIGLIIALIFGAILLPLYY 139
>gnl|CDD|212047 cd11477, SLC5sbd_u1, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or solute
sodium symporter family) is a family of proteins that
co-transports Na+ with sugars, amino acids, inorganic
ions or vitamins. Prokaryotic members of this family
include Vibrio parahaemolyticus glucose/galactose
(vSGLT), and Escherichia coli proline (PutP) and
pantothenate (PutF) cotransporters. One member of the
SLC5 family, human SGLT3, has been characterized as a
glucose sensor and not a transporter. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 495
Score = 31.8 bits (73), Expect = 1.00
Identities = 19/75 (25%), Positives = 24/75 (32%), Gaps = 18/75 (24%)
Query: 16 PPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVS----------FSTSS------SFFF 59
P FF FF F FFF +F ++ S S S +
Sbjct: 213 PEGFFDFFLSLDGFTGFGALFFFILWFGWYAGSASGGGWYDAQRYLSAKSEKAAKKAALL 272
Query: 60 FFLHLL--PLLVLLP 72
F L PL +LP
Sbjct: 273 FAALYLVRPLPWMLP 287
>gnl|CDD|221704 pfam12676, DUF3796, Protein of unknown function (DUF3796). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are approximately 120 amino acids in
length.
Length = 121
Score = 30.4 bits (69), Expect = 1.0
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTS 54
F FF F F+FF FF FF +FF S +
Sbjct: 15 FLGFFTFSGDKVSFLFYFFAFFAFFSYFFEAKVSNT 50
Score = 29.6 bits (67), Expect = 1.8
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 21 FFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSS 55
F + FF F F F+FF FF FF F +
Sbjct: 12 FLGFLGFFTFSGDKVSFLFYFFAFFAFFSYFFEAK 46
>gnl|CDD|182597 PRK10626, PRK10626, hypothetical protein; Provisional.
Length = 239
Score = 31.2 bits (71), Expect = 1.1
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 173 SVGSEDDVVIVPNIPMLTWEKVDLSFLPNGSVTFNQRKVFRFDPDQ 218
SV +DDV+I P + +L P+G+V N +++ + Q
Sbjct: 25 SVTPQDDVIISPQTVQVVGASGNLVISPDGNVMRNGKQL-SLNAAQ 69
>gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region.
This family represents a unit of six transmembrane
helices. Many members of the ABC transporter family
(pfam00005) have two such regions.
Length = 274
Score = 31.1 bits (71), Expect = 1.2
Identities = 14/58 (24%), Positives = 19/58 (32%)
Query: 26 CFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLLPLQIEPRLMPRF 83
+ D FF F V F L +LPLL+LL + +L
Sbjct: 112 RDGLGDKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLN 169
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 31.5 bits (72), Expect = 1.3
Identities = 9/60 (15%), Positives = 14/60 (23%)
Query: 12 FLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLL 71
FL F+ FF F ++ + + L L L
Sbjct: 156 FLILAILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGL 215
Score = 28.4 bits (64), Expect = 9.5
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 3/58 (5%)
Query: 21 FFFYCCFFIFDFYFFFFF---FFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLLPLQI 75
F + F FF +SF + L+L +L L +
Sbjct: 156 FLILAILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEA 213
>gnl|CDD|211613 TIGR00882, 2A0105, oligosaccharide:H+ symporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 396
Score = 31.3 bits (71), Expect = 1.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 37 FFFFFFFFFFFFVSFSTSSSFFFFFLH 63
F+ F FFF +F S FF +LH
Sbjct: 4 FWMFGLFFFLYFFIMSAYFPFFPIWLH 30
>gnl|CDD|100084 cd06163, S2P-M50_PDZ_RseP-like, RseP-like Site-2 proteases (S2P),
zinc metalloproteases (MEROPS family M50A), cleave
transmembrane domains of substrate proteins, regulating
intramembrane proteolysis (RIP) of diverse signal
transduction mechanisms. In Escherichia coli, the S2P
homolog RseP is involved in the sigmaE pathway of
extracytoplasmic stress responses. Also included in this
group are such homologs as Bacillus subtilis YluC,
Mycobacterium tuberculosis Rv2869c S2P, and Bordetella
bronchiseptica HurP. Rv2869c S2P appears to have a role
in the regulation of prokaryotic lipid biosynthesis and
membrane composition and YluC of Bacillus has a role in
transducing membrane stress. This group includes
bacterial and eukaryotic S2P/M50s homologs with either
one or two PDZ domains present. PDZ domains are believed
to have a regulatory role. The RseP PDZ domain is
required for the inhibitory reaction that prevents
cleavage of its substrate, RseA.
Length = 182
Score = 30.8 bits (71), Expect = 1.3
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 35 FFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVL 70
F F +SF S L+LLP+ L
Sbjct: 99 LANFLLAIVLFAVLLSFLALLSINLGILNLLPIPAL 134
>gnl|CDD|177156 MTH00093, ND4L, NADH dehydrogenase subunit 4L; Provisional.
Length = 77
Score = 29.1 bits (66), Expect = 1.3
Identities = 11/51 (21%), Positives = 15/51 (29%), Gaps = 6/51 (11%)
Query: 19 FFFFFYCCF-FIFDFYFFFFF-----FFFFFFFFFFVSFSTSSSFFFFFLH 63
F F F + F F F +F+ F FF+F
Sbjct: 1 MIFLFISLLMLFFKYKRLIFILISLEFLMMSLFIYFMYFLNEMMFFYFMCF 51
Score = 28.7 bits (65), Expect = 1.7
Identities = 9/49 (18%), Positives = 13/49 (26%), Gaps = 2/49 (4%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFF--FFFFFFFVSFSTSSSFFFFFLHLL 65
F F F + F F F+ F + FF +
Sbjct: 2 IFLFISLLMLFFKYKRLIFILISLEFLMMSLFIYFMYFLNEMMFFYFMC 50
Score = 27.5 bits (62), Expect = 3.8
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 7 ISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFF-FFFFFVSFSTSSS 56
IS F + F F+ F +F +F FF+F+ FS SS
Sbjct: 6 ISLLMLFFKYKRLIFILISLEFLMMSLFIYFMYFLNEMMFFYFMCFSVISS 56
>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family. This family
includes many hypothetical membrane proteins of unknown
function. Many of the proteins contain two copies of
the aligned region. The family used to be known as
DUF6.
Length = 126
Score = 29.9 bits (68), Expect = 1.3
Identities = 9/61 (14%), Positives = 17/61 (27%), Gaps = 9/61 (14%)
Query: 11 SFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVL 70
L Y F + +F+ + + S+S L P+ L
Sbjct: 45 FALLSLKAILALLYLGLFG--------TALGYLLYFYALKY-VSASNASVITSLSPVFTL 95
Query: 71 L 71
+
Sbjct: 96 I 96
>gnl|CDD|227696 COG5409, COG5409, EXS domain-containing protein [Signal
transduction mechanisms].
Length = 384
Score = 31.3 bits (71), Expect = 1.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 38 FFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLL 71
F FF F F++ F F++ LPLL +
Sbjct: 94 FHFFTTSLFIFLNAVEGLKFILLFVYFLPLLQVG 127
>gnl|CDD|222635 pfam14264, Glucos_trans_II, Glucosyl transferase GtrII. This
family includes glucosyl transferase II from the
Shigella phage SfII, which mediates seroconversion of S.
flexneri when the phage is integrated into the host
chromosome.
Length = 317
Score = 31.1 bits (71), Expect = 1.4
Identities = 15/79 (18%), Positives = 21/79 (26%), Gaps = 11/79 (13%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFST-------SSSFFFFFLHLLPLLV-- 69
F F + + Y F V + F L LLP +
Sbjct: 230 FSFLKSQSGYPYYTYLLIVLLLLFLLLILLVVRKRKKRKKPLALLLFLLLLLLLPFAMFL 289
Query: 70 --LLPLQIEPRLMPRFPLF 86
LL R + +PL
Sbjct: 290 ILLLAPVTALRTLMGYPLV 308
>gnl|CDD|214413 MTH00062, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 417
Score = 31.4 bits (72), Expect = 1.4
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFF---LHLLPLLVLL 71
F + F FF F F + F ++S F+F L ++PLL LL
Sbjct: 56 FLGLYSQVMFYNLLSGVSRFFLFLSLIFSILCFCVNNSLLFWFFYELSIIPLLYLL 111
Score = 31.0 bits (71), Expect = 1.7
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 25 CCFFIFDFYFFFFFFFFFFF--FFFFVSFS 52
C FIF F + F F FF + S
Sbjct: 218 FCGFIFSGSFLGYLFLCCLFSVFFLITACS 247
>gnl|CDD|220689 pfam10318, 7TM_GPCR_Srh, Serpentine type 7TM GPCR chemoreceptor
Srh. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srh is part of the Str
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 302
Score = 31.0 bits (71), Expect = 1.5
Identities = 8/64 (12%), Positives = 14/64 (21%), Gaps = 7/64 (10%)
Query: 2 KKSLQISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFF 61
+++ PP+FF D +F FF
Sbjct: 153 EEAKLKVLKKLPCLPPEFFDEPPVFVLATDSTYFLISIVILILILII-------QILFFV 205
Query: 62 LHLL 65
+
Sbjct: 206 FLTI 209
>gnl|CDD|214793 smart00730, PSN, Presenilin, signal peptide peptidase, family.
Presenilin 1 and presenilin 2 are polytopic membrane
proteins, whose genes are mutated in some individuals
with Alzheimer's disease. Distant homologues, present
in eukaryotes and archaea, also contain conserved
aspartic acid residues which are predicted to
contribute to catalysis. At least one member of this
family has been shown to possess signal peptide
peptidase activity.
Length = 249
Score = 31.1 bits (71), Expect = 1.5
Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 3/47 (6%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLL 65
F F + Y FF + +F F + L+ L
Sbjct: 11 IVFPIVATFVLVLLYKFFKYLVIVLVIYFSSLGVL---FLYSLLYPL 54
>gnl|CDD|177150 MTH00083, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 256
Score = 30.7 bits (70), Expect = 1.6
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 21 FFFYCCFFIFDFYFFFFFFFFFFFFFFFVSF 51
+F Y F+ FFF + F+SF
Sbjct: 22 LGLTSSLVVFFKYGLFYSFFFSLLYLLFISF 52
Score = 30.7 bits (70), Expect = 1.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 27 FFIFDFYFFFFFFFFFFFFFFFV 49
FIF + FFF F+ FF V
Sbjct: 81 LFIFSEFMFFFSIFWTFFDAALV 103
>gnl|CDD|240604 cd12921, VKOR_4, Vitamin K epoxide reductase (VKOR) family in
bacteria. This family includes vitamin K epoxide
reductase (VKOR) present only in bacteria. VKOR (also
named VKORC1) is an integral membrane protein that
catalyzes the reduction of vitamin K 2,3-epoxide and
vitamin K to vitamin K hydroquinone, an essential
co-factor subsequently used in the gamma-carboxylation
of glutamic acid residues in blood coagulation enzymes.
All homologs of VKOR contain an active site CXXC motif,
which is switched between reduced and disulfide-bonded
states during the reaction cycle. In some bacterial
homologs, the VKOR domain is fused with domains of the
thioredoxin family of oxidoreductases which may
function as redox partners in initiating the reduction
cascade. This family also has a cysteine peptidase
domain present at the N-terminus of the VKOR domain.
Length = 128
Score = 30.0 bits (68), Expect = 1.6
Identities = 9/36 (25%), Positives = 12/36 (33%)
Query: 36 FFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLL 71
+FF ++S F L LL L L
Sbjct: 62 LLYFFGLLLLLLLSPLNSSLLFLLSLLLLLALPAEL 97
>gnl|CDD|225064 COG2153, ElaA, Predicted acyltransferase [General function
prediction only].
Length = 155
Score = 30.0 bits (68), Expect = 1.6
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 12/54 (22%)
Query: 427 MDILKVKPFVEVTVGQLLWGYEDPLLKLAKDVVPKEQKLPYEEFGLLYGGIDGL 480
+ K F ++TV +L YE LLKL DV EQ PY E +DG
Sbjct: 2 TIEWQCKHFNDLTVREL---YE--LLKLRVDVFVVEQNCPYPE-------LDGK 43
>gnl|CDD|177124 MTH00049, COX3, cytochrome c oxidase subunit III; Validated.
Length = 215
Score = 30.7 bits (70), Expect = 1.6
Identities = 11/51 (21%), Positives = 14/51 (27%), Gaps = 7/51 (13%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVS-------FSTSSSFFFFFL 62
F F F F + FVS S+F+ F L
Sbjct: 12 VGFGLVGLFLWKPFILLVFLILWVLLIVIFVSDGLVQVKHHYESAFWLFIL 62
>gnl|CDD|217401 pfam03169, OPT, OPT oligopeptide transporter protein. The OPT
family of oligopeptide transporters is distinct from the
ABC pfam00005 and PTR pfam00854 transporter families.
OPT transporters were first recognised in fungi (Candida
albicans and Schizosaccharomyces pombe), but this
alignment also includes orthologues from Arabidopsis
thaliana. OPT transporters are thought to have 12-14
transmembrane domains and contain the following motif:
SPYxEVRxxVxxxDDP.
Length = 619
Score = 31.1 bits (71), Expect = 1.7
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 18 QFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFL 62
+ FF F +Y+F F+ F F +V + S+ F L
Sbjct: 163 RLKFFLIGFVASFVYYWFPFYIFPALSSFSWVCWIAPSNPTFGLL 207
>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope
biogenesis, outer membrane].
Length = 518
Score = 31.2 bits (71), Expect = 1.8
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 9/76 (11%)
Query: 7 ISFTSFLFPPPQFFFFFYCCFFIF---------DFYFFFFFFFFFFFFFFFVSFSTSSSF 57
++F + +F + + F F F FF F+++ S
Sbjct: 30 LAFPPPDWWWLAWFSLAPLLWLVRGAPTSWEGLAKSGFLFGFGFFLAGFYWLGTSLGVGL 89
Query: 58 FFFFLHLLPLLVLLPL 73
+ L L++LL
Sbjct: 90 GLLAVALPLLVLLLAA 105
>gnl|CDD|220299 pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is
a conserved membrane protein. The yfhO gene is
transcribed in Difco sporulation medium and the
transcription is affected by the YvrGHb two-component
system. Some members of this family have been annotated
as glycosyl transferases of the PMT family.
Length = 835
Score = 31.1 bits (71), Expect = 1.9
Identities = 12/82 (14%), Positives = 16/82 (19%), Gaps = 18/82 (21%)
Query: 8 SFTSFLFPPPQFFF--FFYCCFFIFDF---------YFFFFFFFFFFFFFFFVSFSTSS- 55
+ S L F+F Y +FF
Sbjct: 246 TEVSILLTFDINPLDLLAKLLIGSFNFTQMGGLPNIYVGLLPLLLLILYFFNKLIKLKEK 305
Query: 56 ------SFFFFFLHLLPLLVLL 71
F LP L L+
Sbjct: 306 LLFALLLLFLILSFYLPPLDLV 327
Score = 30.3 bits (69), Expect = 3.6
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFF-FFFFFFFVSFSTSSSFFFFFLHLL 65
+ I +FYF + F +F + + F S + FL +
Sbjct: 170 LYIIALALLLISNFYFGYMICIFLVLYFLYRLIFKDIKSRWKQFLRFI 217
Score = 28.7 bits (65), Expect = 9.7
Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 24/86 (27%)
Query: 9 FTSFLFPPPQFFFFF-----------------YCCFFIFDFYFFFFFFF--FFFFFFFFV 49
S F F F +Y F + F
Sbjct: 72 LLSPFNL---LVFLFPASQLPDAILLIILLKIGLAGLSFAYYLRKRFKKISKWSALLFST 128
Query: 50 SFSTSSSFFFFFLHL--LPLLVLLPL 73
+++ S + +L L L+LLPL
Sbjct: 129 AYALSGFVIYNRFNLMWLDALILLPL 154
>gnl|CDD|233565 TIGR01770, NDH_I_N, proton-translocating NADH-quinone
oxidoreductase, chain N. This model describes the 14th
(based on E. coli) structural gene, N, of bacterial and
chloroplast energy-transducing NADH (or NADPH)
dehydrogenases. This model does not describe any subunit
of the mitochondrial complex I (for which the subunit
composition is very different), nor NADH dehydrogenases
that are not coupled to ion transport. The Enzyme
Commission designation 1.6.5.3, for NADH dehydrogenase
(ubiquinone), is applied broadly, perhaps unfortunately,
even if the quinone is menaquinone (Thermus,
Mycobacterium) or plastoquinone (chloroplast). For
chloroplast members, the name NADH-plastoquinone
oxidoreductase is used for the complex and this protein
is designated as subunit 2 or B. This model also
includes a subunit of a related complex in the archaeal
methanogen, Methanosarcina mazei, in which F420H2
replaces NADH and 2-hydroxyphenazine replaces the
quinone [Energy metabolism, Electron transport].
Length = 468
Score = 31.1 bits (71), Expect = 2.0
Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 7/67 (10%)
Query: 9 FTSFLFPPPQFFFFFYCCFFIFDF--YFFFFFFFFFFFFFFFVSFST-----SSSFFFFF 61
+ FL + FF FFI D FF + S + F F+
Sbjct: 47 VSLFLTLQYASYLFFGFSFFIVDNFSLIIKLILLLSTLLLFFFALSYFSKEKINKFEFYI 106
Query: 62 LHLLPLL 68
L L LL
Sbjct: 107 LLLFALL 113
>gnl|CDD|192487 pfam10225, DUF2215, Uncharacterized conserved protein (DUF2215).
This entry is the central 200 residues of a family of
proteins conserved from worms to humans. The function
is unknown.
Length = 248
Score = 30.5 bits (69), Expect = 2.0
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 8/64 (12%)
Query: 29 IFDFYFFFFFFFFFFFFFFFVSFSTSSSFFF-----FFLHLLPLLVLLPLQIEPRLMPRF 83
FD + F F S S F++ + LLV+ L +L+PR
Sbjct: 8 EFDLWRVFLLVVGLILFLLAPLLSRSVLFYYSSGIALGVLASLLLVVFQLM---KLLPRK 64
Query: 84 PLFQ 87
F
Sbjct: 65 SGFY 68
>gnl|CDD|216351 pfam01184, Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family. The Ady2
protein in is required for acetate in Saccharomyces
cerevisiae, and is probably an acetate transporter. A
homologue in Yarrowia lipolytica (GPR1) has a role in
acetic acid sensitivity.
Length = 210
Score = 30.3 bits (69), Expect = 2.2
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 21/79 (26%)
Query: 9 FTSFLFPPPQFFFFFYCCFFIFDF-----Y-----------FFFFFFFFFFFFFFFVSFS 52
FTS+ F+ + FI F Y + +F F F +
Sbjct: 82 FTSY-----GAFWLSFAAIFIPSFGIAAAYADDPEFANAIGLYLIGWFIFTFMLLLCTLK 136
Query: 53 TSSSFFFFFLHLLPLLVLL 71
++ +FF F L +LL
Sbjct: 137 STVAFFLLFFTLDLTFLLL 155
>gnl|CDD|217379 pfam03125, Sre, C. elegans Sre G protein-coupled chemoreceptor.
Caenorhabditis elegans Sre proteins are candidate
chemosensory receptors. There are four main recognised
groups of such receptors: Odr-10, Sra, Sro, and Srg.
Sre (this family), Sra pfam02117 and Srb pfam02175
comprise the Sra group. All of the above receptors are
thought to be G protein-coupled seven transmembrane
domain proteins. The existence of several different
chemosensory receptors underlies the fact that in spite
of having only 20-30 chemosensory neurones, C. elegans
detects hundreds of different chemicals, with the
ability to discern individual chemicals among
combinations.
Length = 363
Score = 30.8 bits (70), Expect = 2.2
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 3/71 (4%)
Query: 5 LQISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFF---FFFFFVSFSTSSSFFFFF 61
L + F + F F F+I Y F + F ++ F +F
Sbjct: 13 LPVYFYNEPFFAQLLLSIFELLFYILCAYIVFVSLYVILKIRLFHKNLTILFIPLFGIWF 72
Query: 62 LHLLPLLVLLP 72
++ ++ +
Sbjct: 73 ELIIGKIITIA 83
>gnl|CDD|220692 pfam10324, 7TM_GPCR_Srw, Serpentine type 7TM GPCR chemoreceptor
Srw. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srw is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'. The genes encoding Srw do not appear to be
under as strong an adaptive evolutionary pressure as
those of Srz.
Length = 317
Score = 30.6 bits (70), Expect = 2.2
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 7 ISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFL 62
ISF FP + + FF D + F ++ + S FL
Sbjct: 248 ISFFIAEFPLGISYIIQF--FFYDDPGIRLILTYLSVIFSLLLTINAISHCLICFL 301
>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter.
Length = 210
Score = 29.9 bits (68), Expect = 2.4
Identities = 8/44 (18%), Positives = 12/44 (27%), Gaps = 3/44 (6%)
Query: 18 QFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFF 61
Q F +F+ FF F ++ S F
Sbjct: 111 QAIIFLLIVYFMVGLPVSRFFLFLLVLLLTALAA---SGLGLFI 151
>gnl|CDD|233317 TIGR01218, Gpos_tandem_5TM, tandem five-transmembrane protein.
Members of this family of proteins, with average length
of 210, have no invariant residues but five predicted
transmembrane segments. Strangely, most members occur in
groups of consecutive paralogous genes. A striking
example is a set of eleven encoded consecutively,
head-to-tail, in Staphylococcus aureus strain COL.
Length = 208
Score = 29.9 bits (68), Expect = 2.6
Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 6/49 (12%)
Query: 12 FLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFF 60
+ P + F F + FF F F+ F++ +
Sbjct: 138 KIRPTSFKYRIFIL------FLYIFFLGLSIFLFYLFINNGGENIILVI 180
Score = 29.1 bits (66), Expect = 5.5
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 29 IFDFYFFFFFFF-FFFFFFFFVSFSTSSSFFFFFLHLLPLLVLL 71
F F + FF F F++ + ++ + L
Sbjct: 146 YRIFILFLYIFFLGLSIFLFYLFINNGGENIILVINGIIFLFFF 189
>gnl|CDD|219391 pfam07378, FlbT, Flagellar protein FlbT. This family consists of
several FlbT proteins. FlbT is a post-transcriptional
regulator of flagellin. FlbT is associated with the 5'
untranslated region (UTR) of fljK (25 kDa flagellin)
mRNA and that this association requires a predicted loop
structure in the transcript. Mutations within this loop
abolish FlbT association and result in increased mRNA
stability. It is therefore thought that FlbT promotes
the degradation of flagellin mRNA by associating with
the 5' UTR.
Length = 126
Score = 29.0 bits (66), Expect = 2.8
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
Query: 520 CLIRNSSRQSTLSLEGTAHYAANDDISRQKKAM 552
+IRN R+S L +E A I R+K +
Sbjct: 16 AVIRNGDRRSRLEIENDA------PILREKDIL 42
>gnl|CDD|221933 pfam13144, SAF_2, SAF-like. The members of this family are similar
to those in the SAF family, and include flagellar
basal-body proteins and pilus-assembly proteins.
Length = 196
Score = 29.8 bits (68), Expect = 2.8
Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 18/73 (24%)
Query: 189 LTWEKVDLSFLPNGSVTFNQRKVFRFDPDQSVGSEDDVVIVPNIPMLKNGTSK------- 241
L ++ DLS LP G +T DQ++G I P+ +N K
Sbjct: 95 LALKRGDLSRLPGGYLT-----------DQAIGKRLKRSIRAGQPITQNMLRKPPLVKKG 143
Query: 242 DNVTVFTGENGIM 254
VT+ G
Sbjct: 144 QTVTIIARGGGFS 156
>gnl|CDD|190882 pfam04144, SCAMP, SCAMP family. In vertebrates, secretory carrier
membrane proteins (SCAMPs) 1-3 constitute a family of
putative membrane-trafficking proteins composed of
cytoplasmic N-terminal sequences with NPF repeats, four
central transmembrane regions (TMRs), and a cytoplasmic
tail. SCAMPs probably function in endocytosis by
recruiting EH-domain proteins to the N-terminal NPF
repeats but may have additional functions mediated by
their other sequences.
Length = 177
Score = 29.5 bits (67), Expect = 2.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 36 FFFFFFFFFFFFFVSFS 52
F FF+FFF FF + F
Sbjct: 100 FNFFWFFFIFFLHILFC 116
Score = 29.5 bits (67), Expect = 2.9
Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 8/53 (15%)
Query: 12 FLFPPPQFFFFF---YCCF-----FIFDFYFFFFFFFFFFFFFFFVSFSTSSS 56
L P F ++ Y F F F ++FF FF F V
Sbjct: 76 ILGTPGSFVCWYRPVYKAFRTDSSFNFFWFFFIFFLHILFCIIQAVGIPGWGL 128
>gnl|CDD|177132 MTH00060, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 116
Score = 28.7 bits (65), Expect = 2.8
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 33 YFFFFFFFFFFFFFFFVSFSTSSSF 57
F FF FF F + F S +
Sbjct: 2 LVLLFVFFVFFLLFLVIYFFHSGLW 26
Score = 27.9 bits (63), Expect = 5.9
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 13/45 (28%)
Query: 20 FFFFYCCFFIFDF-------------YFFFFFFFFFFFFFFFVSF 51
+FF F IFD F+ F++++FF F+ F
Sbjct: 59 YFFLLVFFVIFDLEISLLLNMPFQGLLFYNFWYYYFFLLLLFLGF 103
Score = 27.6 bits (62), Expect = 8.2
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 29 IFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFF 60
+ + FF FF F +FF S ++ +
Sbjct: 2 LVLLFVFFVFFLLFLVIYFFHSGLWNNKIYSG 33
>gnl|CDD|193533 cd05657, M42_glucanase_like, M42 Peptidase, Endoglucanase-like
subfamily. Peptidase M42 family, glucanase (endo-1
4-beta-glucanase or endoglucanase)-like subfamily.
Proteins in this subfamily are co-catalytic
metallopeptidases, found in archaea and bacteria. They
show similarity to cellulase and endo-1,4-beta-glucanase
(endoglucanase) which typically bind two zinc or cobalt
atoms. Some of the enzymes exhibit typical
aminopeptidase specificity, whereas others are also
capable of N-terminal deblocking activity, i.e.
hydrolyzing acylated N-terminal residues. Many of these
enzymes are assembled either as tetrahedral dodecamers
or as octahedral tetracosameric structures, with the
active site located on the inside such that substrate
sizes are limited, indicating function as possible
peptide scavengers.
Length = 336
Score = 30.2 bits (69), Expect = 2.9
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 13/56 (23%)
Query: 451 LLKLAKDVVPKEQKLP---------YEEFGLLYGGIDGLPAEVTDLLRV--ATTAP 495
LL L K + + K YEE G +G G P +VT+LL V
Sbjct: 188 LLALLKALKEENIKPKRTTHFLFSIYEEVG--HGASAGPPEDVTELLAVDMGAVGD 241
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 30.1 bits (68), Expect = 3.0
Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 5/92 (5%)
Query: 7 ISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLP 66
+ L P + F F FF + + S+ L L
Sbjct: 193 VPAWKLLLRDPVLWLLLALLLF-----GFAFFALLTYLPLYQEVLGLSALLAGLLLGLAG 247
Query: 67 LLVLLPLQIEPRLMPRFPLFQQLTLREGAQVF 98
LL + + RL R ++L L +
Sbjct: 248 LLGAIGRLLLGRLSDRLGRRRRLLLALLLLIL 279
>gnl|CDD|216181 pfam00902, TatC, Sec-independent protein translocase protein
(TatC). The bacterial Tat system has a remarkable
ability to transport folded proteins even enzyme
complexes across the cytoplasmic membrane. It is
structurally and mechanistically similar to the Delta
pH-driven thylakoidal protein import pathway. A
functional Tat system or Delta pH-dependent pathway
requires three integral membrane proteins: TatA/Tha4,
TatB/Hcf106 and TatC/cpTatC. The TatC protein is
essential for the function of both pathways. It might be
involved in twin-arginine signal peptide recognition,
protein translocation and proton translocation. Sequence
analysis predicts that TatC contains six transmembrane
helices (TMHs), and experimental data confirmed that N-
and C-termini of TatC or cpTatC are exposed to the
cytoplasmic or stromal face of the membrane. The
cytoplasmic N-terminus and the first cytoplasmic loop
region of the Escherichia coli TatC protein are
essential for protein export. At least two TatC
molecules co-exist within each Tat translocon.
Length = 212
Score = 29.8 bits (68), Expect = 3.1
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 19/70 (27%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTS--------SSFFFFFLHL------ 64
F F + F + F +F F + F S + F L L
Sbjct: 101 FVFASFLLFLLG--AAFAYFVVLPIALKFLLGFGPEGIEPQPSISEYLSFVLRLLLAFGL 158
Query: 65 ---LPLLVLL 71
LP++++L
Sbjct: 159 LFELPVILVL 168
>gnl|CDD|177251 MTH00208, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 628
Score = 30.3 bits (69), Expect = 3.2
Identities = 8/54 (14%), Positives = 12/54 (22%)
Query: 20 FFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLLPL 73
F F + + + F + LL L L L
Sbjct: 17 FIILLISIFFSSNLPNISTSNASLGGNNNNNSIINYNNSNFSISLLKTLAFLSL 70
Score = 29.6 bits (67), Expect = 5.5
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 13/73 (17%)
Query: 7 ISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFS--------TSSSFF 58
IS +++L F FIFDFYF FF F + + FS ++FF
Sbjct: 86 ISLSNWLSNTLFNFSLS----FIFDFYFILFFSVALFVTWSIIEFSHYYMSNDPNKNAFF 141
Query: 59 FFFLH-LLPLLVL 70
+ LL +L+L
Sbjct: 142 RLLIIFLLNMLIL 154
Score = 29.2 bits (66), Expect = 7.6
Identities = 17/75 (22%), Positives = 22/75 (29%), Gaps = 19/75 (25%)
Query: 9 FTSFLFPPPQFFF-----------FFYCCFFIFDFYFFFFFFFFFFFFF-------FFVS 50
F++F+F P F F F FF FFV+
Sbjct: 494 FSNFVFNLPPLTLPLILKSLPLIVTIIGAAFSFSFLLSLSSNPINSNFFSFLSNQWFFVN 553
Query: 51 FS-TSSSFFFFFLHL 64
S + F FF L
Sbjct: 554 ISHSIIISFSFFTSL 568
>gnl|CDD|177244 MTH00197, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 323
Score = 30.0 bits (68), Expect = 3.4
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 17 PQFFFFFYCCFFIFDFYFFFFFF---FFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLLPL 73
P F +Y +F+ F F F + S SS+ F L L L L PL
Sbjct: 183 PSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPPL 242
>gnl|CDD|224376 COG1459, PulF, Type II secretory pathway, component PulF [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 397
Score = 29.9 bits (68), Expect = 3.7
Identities = 9/68 (13%), Positives = 18/68 (26%), Gaps = 4/68 (5%)
Query: 3 KSLQISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFF-- 60
+ S + L QF F+ ++ + + + +
Sbjct: 189 AEIFESLGAELPALTQFLLAL--SDFLREWGWLLLLIIIIIAIGYLLLLRKPAGRRRLDR 246
Query: 61 FLHLLPLL 68
L LPL
Sbjct: 247 LLLRLPLF 254
>gnl|CDD|219152 pfam06728, PIG-U, GPI transamidase subunit PIG-U. Many eukaryotic
proteins are anchored to the cell surface via
glycosylphosphatidylinositol (GPI), which is
posttranslationally attached to the carboxyl-terminus by
GPI transamidase. The mammalian GPI transamidase is a
complex of at least four subunits, GPI8, GAA1, PIG-S,
and PIG-T. PIG-U is thought to represent a fifth subunit
in this complex and may be involved in the recognition
of either the GPI attachment signal or the lipid portion
of GPI.
Length = 373
Score = 29.9 bits (68), Expect = 3.7
Identities = 22/99 (22%), Positives = 31/99 (31%), Gaps = 16/99 (16%)
Query: 1 MKKSLQISFTSFLFPPPQFFFFFYCCFFI---FDFYFFFFFFFFFF---------FFFFF 48
L L F I +DF + F +++FF
Sbjct: 198 SSSKLSKFLLILLLFLLTLLALLLLSFLITGSWDFLEATYGFILTVSDLTPNLGLWWYFF 257
Query: 49 VS-FSTSSSFFFFFLHLLPLLVLLPLQIEPRLMPRFPLF 86
F FF F L P + +LPL I + + PLF
Sbjct: 258 TEMFDHFRLFFLFVFQLHPFIYVLPLTI---RLRKQPLF 293
>gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 278
Score = 29.6 bits (67), Expect = 3.8
Identities = 3/42 (7%), Positives = 6/42 (14%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFF 60
+F F F + +
Sbjct: 152 LIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALL 193
Score = 28.8 bits (65), Expect = 7.6
Identities = 8/70 (11%), Positives = 15/70 (21%)
Query: 4 SLQISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLH 63
+Q+ L F + + + S ++ L
Sbjct: 152 LIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAILVISILI 211
Query: 64 LLPLLVLLPL 73
LL L
Sbjct: 212 LLLSGFFGGL 221
Score = 28.5 bits (64), Expect = 10.0
Identities = 6/55 (10%), Positives = 11/55 (20%), Gaps = 6/55 (10%)
Query: 19 FFFFFYCCFFIFD------FYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPL 67
+ +F FF SF + ++P
Sbjct: 186 YIALGALLGSLFKNSEAAILVISILILLLSGFFGGLFPLPNMPSFLQWIFSIIPF 240
>gnl|CDD|224718 COG1805, NqrB, Na+-transporting NADH:ubiquinone oxidoreductase,
subunit NqrB [Energy production and conversion].
Length = 400
Score = 30.1 bits (68), Expect = 3.8
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 11/76 (14%)
Query: 9 FTSFLF------PPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFL 62
LF P F +Y I F F F VS S ++ +++
Sbjct: 298 LLFALFNLIGSSTPAAFAMPWYWHLVIGGFAFG-----LLFMATDPVSASFTNLGKWWYG 352
Query: 63 HLLPLLVLLPLQIEPR 78
L+ L+V+L + P
Sbjct: 353 ALIGLMVVLIRVVNPA 368
>gnl|CDD|150923 pfam10327, 7TM_GPCR_Sri, Serpentine type 7TM GPCR chemoreceptor
Sri. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Sri is part of the Str
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 303
Score = 29.8 bits (68), Expect = 3.8
Identities = 8/49 (16%), Positives = 17/49 (34%)
Query: 30 FDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLLPLQIEPR 78
F Y + + F F F + + + + +L L +I +
Sbjct: 182 FAIYDYNPWLIVFGILAIFGGFLSFLILVYLTVDMFRMLKRLRKKISAQ 230
>gnl|CDD|214424 MTH00115, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 174
Score = 28.9 bits (66), Expect = 4.0
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 33 YFFFFFFFFFFFFFFFVSFSTSSSFF 58
YF F F V+ S S ++
Sbjct: 3 YFVFLLGVCFVLGVVGVA-SNPSPYY 27
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease.
Length = 473
Score = 30.0 bits (68), Expect = 4.2
Identities = 9/59 (15%), Positives = 14/59 (23%)
Query: 14 FPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLLP 72
F F + ++SF +L L L+LL
Sbjct: 400 FKACLGPFGVILGLAALITILLIQALYASLPVPKPPKNWGAASFAALYLIALLFLILLI 458
>gnl|CDD|220546 pfam10060, DUF2298, Uncharacterized membrane protein (DUF2298).
This domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 413
Score = 29.7 bits (67), Expect = 4.3
Identities = 10/42 (23%), Positives = 13/42 (30%)
Query: 34 FFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLLPLQI 75
F F ++ S F LL LL +PL
Sbjct: 307 LLAIHGLFLALFGSYLVTRLKSVPKIGFFALLALLFGIPLLA 348
>gnl|CDD|217125 pfam02588, DUF161, Uncharacterized BCR, YitT family COG1284.
This is probably a bacterial ABC transporter permease
(personal obs:Yeats C).
Length = 80
Score = 27.4 bits (62), Expect = 4.4
Identities = 5/40 (12%), Positives = 7/40 (17%), Gaps = 1/40 (2%)
Query: 14 FPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFST 53
I F F + F +S
Sbjct: 42 ISIGIILLIINIPLLIL-GLLFLGFGLYTLLAVFILSLFI 80
>gnl|CDD|224610 COG1696, DltB, Predicted membrane protein involved in D-alanine
export [Cell envelope biogenesis, outer membrane].
Length = 425
Score = 29.6 bits (67), Expect = 4.4
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 9 FTSFLFPPPQFFFFFYCCFFIFDFY-----FFFFFFFFFFFFFFFVSFSTSSSFFFFFLH 63
+ SFLF F F +++ F + FF F + F + + +F +
Sbjct: 1 YFSFLFFY-LFLLAFLPIYWLGLFGKRLQNYLLLVSNFFLLAIFSLVFLILVALYIYFNY 59
Query: 64 LLPLLVL 70
L LL+
Sbjct: 60 QLALLLF 66
>gnl|CDD|216329 pfam01148, CTP_transf_1, Cytidylyltransferase family. The members
of this family are integral membrane protein
cytidylyltransferases. The family includes phosphatidate
cytidylyltransferase EC:2.7.7.41 as well as Sec59 from
yeast. Sec59 is a dolichol kinase EC:2.7.1.108.
Length = 259
Score = 29.6 bits (67), Expect = 4.4
Identities = 7/43 (16%), Positives = 11/43 (25%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFF 61
FY F+ FF + + S +F
Sbjct: 107 LLPLFYVGLFLSLLLITNPFFGLLWALLLILVVWASDIGAYFV 149
>gnl|CDD|233993 TIGR02745, ccoG_rdxA_fixG, cytochrome c oxidase accessory protein
FixG. Member of this ferredoxin-like protein family
are found exclusively in species with an operon
encoding the cbb3 type of cytochrome c oxidase
(cco-cbb3), and near the cco-cbb3 operon in about half
the cases. The cco-cbb3 is found in a variety of
proteobacteria and almost nowhere else, and is
associated with oxygen use under microaerobic
conditions. Some (but not all) of these proteobacteria
are also nitrogen-fixing, hence the gene symbol fixG.
FixG was shown essential for functional cco-cbb3
expression in Bradyrhizobium japonicum.
Length = 434
Score = 29.6 bits (67), Expect = 4.5
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 14 FPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFV 49
F QF FF F+ +FY FF+
Sbjct: 34 FAHRQFHFFG-ITFWPQEFYLLAGLLIIAALGLFFI 68
>gnl|CDD|227100 COG4758, COG4758, Predicted membrane protein [Function unknown].
Length = 235
Score = 29.3 bits (66), Expect = 4.8
Identities = 13/69 (18%), Positives = 19/69 (27%), Gaps = 15/69 (21%)
Query: 18 QFFFFFYCCF--------FIFDFYFFFFFFFFFFFFFFFVS-------FSTSSSFFFFFL 62
+ F F F I +F+ F F + + F FF +
Sbjct: 5 KIFGFIIAIFLALMIIQIVIETLFFWPLVFLLALLLFRIYTTRSRASVLKIIALFLFFAI 64
Query: 63 HLLPLLVLL 71
L LL
Sbjct: 65 VFLIPFTLL 73
Score = 28.5 bits (64), Expect = 8.6
Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 15/99 (15%)
Query: 1 MKKSLQISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFF---------------FF 45
M K F +F F + F F F
Sbjct: 1 MTKKKIFGFIIAIFLALMIIQIVIETLFFWPLVFLLALLLFRIYTTRSRASVLKIIALFL 60
Query: 46 FFFVSFSTSSSFFFFFLHLLPLLVLLPLQIEPRLMPRFP 84
FF + F + F L ++ + + L L I+ + R P
Sbjct: 61 FFAIVFLIPFTLLGFLLAIIFIFIGLYLIIKYIIKKREP 99
>gnl|CDD|223692 COG0619, CbiQ, ABC-type cobalt transport system, permease component
CbiQ and related transporters [Inorganic ion transport
and metabolism].
Length = 252
Score = 29.3 bits (66), Expect = 5.0
Identities = 14/77 (18%), Positives = 20/77 (25%), Gaps = 4/77 (5%)
Query: 34 FFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLLPLQIEPRLMPRFPLFQQLTL-- 91
F F + F + ++L L I R++ LTL
Sbjct: 66 LGFLLLGLLLIAFTNGFSLGPAVGLFGLGPVTIGSLVLGLLIALRVLLILLAALLLTLTT 125
Query: 92 --REGAQVFEMWRKPPV 106
E E P V
Sbjct: 126 PPLELTSALERLLVPLV 142
>gnl|CDD|146748 pfam04276, DUF443, Protein of unknown function (DUF443). Family of
uncharacterized proteins.
Length = 197
Score = 29.1 bits (66), Expect = 5.1
Identities = 14/58 (24%), Positives = 17/58 (29%), Gaps = 13/58 (22%)
Query: 12 FLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFF-------VSFSTSSSFFFFFL 62
+L P + FFF Y FF F F + F F F F
Sbjct: 129 WLRPSFKNFFFILFA------YIFFGGFSILALSGFITIEVQNIIIFIGWIIFLFLFF 180
>gnl|CDD|217785 pfam03901, Glyco_transf_22, Alg9-like mannosyltransferase family.
Members of this family are mannosyltransferase enzymes.
At least some members are localised in endoplasmic
reticulum and involved in GPI anchor biosynthesis.
Length = 412
Score = 29.6 bits (67), Expect = 5.3
Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 8/77 (10%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFF------FFFLHLLP--LLVL 70
+ D YF+ F F F + S SS + ++F + LP L
Sbjct: 216 VLLLVLGAVILIDSYFYGRFVFTPLNFLKYNVLSNGSSLYGTHPWYWYFSNGLPNILGPF 275
Query: 71 LPLQIEPRLMPRFPLFQ 87
L I L+ L
Sbjct: 276 LLAFILGPLVLVSRLLL 292
>gnl|CDD|223425 COG0348, NapH, Polyferredoxin [Energy production and conversion].
Length = 386
Score = 29.3 bits (66), Expect = 5.3
Identities = 9/44 (20%), Positives = 14/44 (31%)
Query: 8 SFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSF 51
S L + F FF F+ +F F F ++
Sbjct: 34 SQAVLLDFLGRPFGFFGLQFWAQEFLLLALLLIGALFGLFLITL 77
>gnl|CDD|227865 COG5578, COG5578, Predicted integral membrane protein [Function
unknown].
Length = 208
Score = 28.8 bits (65), Expect = 5.9
Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 9/62 (14%)
Query: 16 PPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTS------SSFFFFFLHLLPLLV 69
P F F F + F + F V F S SF F+ L+
Sbjct: 103 PGLLLFILTFVFVFALFLYVIA---FLYVFPVLVHFELSLRQYLKLSFILGFISPKYTLL 159
Query: 70 LL 71
+L
Sbjct: 160 ML 161
>gnl|CDD|214441 MTH00157, ATP6, ATP synthase F0 subunit 6; Provisional.
Length = 223
Score = 29.0 bits (66), Expect = 5.9
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 34 FFFFFFFFFFFFFFFVSFSTSSSFFFFFLH 63
F F F+ ++ + LH
Sbjct: 25 FLGLLFIPSSFWLIPSRYNILWNKILKTLH 54
>gnl|CDD|177131 MTH00059, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 289
Score = 29.1 bits (66), Expect = 6.2
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 26 CFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLL 65
CFF++ +YFF+ +F S +FF F LL
Sbjct: 192 CFFLYLYYFFWSSGVIIYFSSLSDSNDLKGYYFFGFCFLL 231
Score = 28.4 bits (64), Expect = 9.4
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 27 FFIFDFYFFFFFFFFF------FFFFFFVSFSTSSSFFFFFL 62
D YFF FF F F F+ + FS SS + +
Sbjct: 79 LLFSDLYFFIFFGFVVKFGLFPFMFWVYRVFSNSSWVVIWLI 120
>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD
superfamily, subfamily IC. The P-type ATPases are a
large family of trans-membrane transporters acting on
charged substances. The distinguishing feature of the
family is the formation of a phosphorylated intermediate
(aspartyl-phosphate) during the course of the reaction.
Another common name for these enzymes is the E1-E2
ATPases based on the two isolable conformations: E1
(unphosphorylated) and E2 (phosphorylated). Generally,
P-type ATPases consist of only a single subunit
encompassing the ATPase and ion translocation pathway,
however, in the case of the potassium (TIGR01497) and
sodium/potassium (TIGR01106) varieties, these functions
are split between two subunits. Additional small
regulatory or stabilizing subunits may also exist in
some forms. P-type ATPases are nearly ubiquitous in life
and are found in numerous copies in higher organisms (at
least 45 in Arabidopsis thaliana, for instance ).
Phylogenetic analyses have revealed that the P-type
ATPase subfamily is divided up into groups based on
substrate specificities and this is represented in the
various subfamily and equivalog models that have been
made: IA (K+) TIGR01497, IB (heavy metals) TIGR01525,
IIA1 (SERCA-type Ca++) TIGR01116, IIA2 (PMR1-type Ca++)
TIGR01522, IIB (PMCA-type Ca++) TIGR01517, IIC (Na+/K+,
H+/K+ antiporters) TIGR01106, IID (fungal-type Na+ and
K+) TIGR01523, IIIA (H+) TIGR01647, IIIB (Mg++)
TIGR01524, IV (phospholipid, flippase) TIGR01652 and V
(unknown specificity) TIGR01657. The crystal structure
of one calcium-pumping ATPase and an analysis of the
fold of the catalytic domain of the P-type ATPases have
been published. These reveal that the catalytic core of
these enzymes is a haloacid dehalogenase(HAD)-type
aspartate-nucleophile hydrolase. The location of the
ATP-binding loop in between the first and second HAD
conserved catalytic motifs defines these enzymes as
members of subfamily I of the HAD superfamily (see also
TIGR01493, TIGR01509, TIGR01549, TIGR01544 and
TIGR01545). Based on these classifications, the P-type
ATPase _superfamily_ corresponds to the IC subfamily of
the HAD superfamily.
Length = 543
Score = 29.2 bits (66), Expect = 6.2
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 31 DFYF--FFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLV 69
+F F F F + F+ +S F L L +LV
Sbjct: 159 NFIFILFLLLLALAVFLYLFIRGWDPNSIFKALLRALIVLV 199
>gnl|CDD|233542 TIGR01713, typeII_sec_gspC, type II secretion system protein C.
This model represents GspC, protein C of the main
terminal branch of the general secretion pathway, also
called type II secretion. This system transports folded
proteins across the bacterial outer membrane and is
widely distributed in Gram-negative pathogens [Protein
fate, Protein and peptide secretion and trafficking].
Length = 259
Score = 29.0 bits (65), Expect = 6.8
Identities = 38/191 (19%), Positives = 58/191 (30%), Gaps = 54/191 (28%)
Query: 158 VTFNQRKVFRFDPDQSVGSEDDVVIVPNIPMLTWEKVDLSFLPNGSVTFNQRKVFRFDPD 217
++F ++SV + + + LS G V + D
Sbjct: 48 SDLKLFELFGVFNEKSVS-----EVKTSPVSVNAPVSPLSLKLTGIVASS-------DRI 95
Query: 218 QSVGSEDDVVIVPNIPMLKNGTSKDNVTVFTGEN-----------GIMKFGLIDKYNGRD 266
+S+ +I + + V G N I +I +YNGR
Sbjct: 96 RSI-----AII-----------EEGSEQVSLGINESFEGYKAKIAKIEPDRVIFEYNGRY 139
Query: 267 H-LPHWKTDACNSLEGSDGSIFPPHIEKDR----TLFVYDKDVCRLLPLVFDKEVETNGN 321
L T S S+ + IE+ +F Y RL P V N
Sbjct: 140 EPLELKNTKGEKSNNSSEIVVSRRIIEELTKDPQKMFDY----IRLSP------VMKNDK 189
Query: 322 VLGYRFTPSKD 332
+ GYR P KD
Sbjct: 190 LEGYRLNPGKD 200
>gnl|CDD|238227 cd00386, Heme_Cu_Oxidase_III_like, Heme-copper oxidase subunit
III. Heme-copper oxidases are transmembrane protein
complexes in the respiratory chains of prokaryotes and
mitochondria which couple the reduction of molecular
oxygen to water to, proton pumping across the membrane.
The heme-copper oxidase superfamily is diverse in terms
of electron donors, subunit composition, and heme
types. This superfamily includes cytochrome c and
ubiquinol oxidases. Bacterial oxidases typically
contain 3 or 4 subunits in contrast to the 13 subunit
bovine cytochrome c oxidase (CcO). Subunits I, II, and
III of mammalian CcO are encoded within the
mitochondrial genome and the remaining 10 subunits are
encoded within the nuclear genome. Subunits I, II and
III of ubiquinol oxidase are homologous to the
corresponding subunits in CcO. This group additionally
contains proteins which are fusions between subunits I
and III, such as Sulfolobus acidocaldarius SoxM, a
subunit of the SoxM terminal oxidase complex. It also
includes NorE which has been speculated to be a subunit
of nitric oxide reductase. Some archaebacterial
cytochrome oxidases lack subunit III. Although not
required for catalytic activity, subunit III is
believed to play a role in assembly of the multimer
complex. Rhodobacter CcO subunit III stabilizes the
integrity of the binuclear center in subunit I. It has
been proposed that archaea acquired heme-copper
oxidases through gene transfer from gram-positive
bacteria.
Length = 183
Score = 28.3 bits (64), Expect = 6.8
Identities = 8/35 (22%), Positives = 11/35 (31%)
Query: 37 FFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLL 71
F FF+ +F S F L L+
Sbjct: 22 MLFGSFFWAYFHSRLSPPVEFGAGLDPLDLPLLNT 56
>gnl|CDD|214436 MTH00151, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 565
Score = 29.0 bits (66), Expect = 6.9
Identities = 6/28 (21%), Positives = 7/28 (25%)
Query: 32 FYFFFFFFFFFFFFFFFVSFSTSSSFFF 59
F F + F F S F
Sbjct: 7 SSFLLFSYSVFLFPLLGYFGLNGISLIF 34
Score = 28.7 bits (65), Expect = 9.6
Identities = 20/71 (28%), Positives = 23/71 (32%), Gaps = 2/71 (2%)
Query: 3 KSLQISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFL 62
K LQ F F F + F F F F+ F S SFFF +
Sbjct: 432 KLLQSLFEGFS--EEFFLPSYLKLLIGFVILLGLFLSFGFWDSGFSSSKMVKLSFFFSSM 489
Query: 63 HLLPLLVLLPL 73
L L PL
Sbjct: 490 WFLSPLSSQPL 500
>gnl|CDD|214434 MTH00149, ND4L, NADH dehydrogenase subunit 4L; Provisional.
Length = 97
Score = 27.5 bits (62), Expect = 7.0
Identities = 16/79 (20%), Positives = 16/79 (20%), Gaps = 26/79 (32%)
Query: 19 FFFFFYCCFFIFDFYFFFFFF------------------FFFFFFFFFVSFSTSSSFFFF 60
F F F F F F S SS F
Sbjct: 2 MFMLLLLSLFGFLMGVFALLFQYKHLLSILLSLEALMLSLLVMMFSSSGLISFSSYLFLI 61
Query: 61 FLHL--------LPLLVLL 71
L L LLV L
Sbjct: 62 ILTFGACEASLGLSLLVSL 80
>gnl|CDD|197841 smart00714, LITAF, Possible membrane-associated motif in
LPS-induced tumor necrosis factor alpha factor (LITAF),
also known as PIG7, and other animal proteins.
Length = 67
Score = 26.5 bits (59), Expect = 7.0
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 32 FYFFFFFFFFFFFFFFFVSFSTSSS 56
+ F FF F + S
Sbjct: 24 LAWLICFLLFFLCFCCCLPCCLDSF 48
>gnl|CDD|177217 MTH00161, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 113
Score = 27.4 bits (62), Expect = 7.4
Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 21 FFFYCC-FFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLL 68
FF F IFD F F + +S FF + LL L
Sbjct: 55 FFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSWLITSSFFILILLLGLY 103
>gnl|CDD|234626 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase;
Reviewed.
Length = 307
Score = 28.9 bits (66), Expect = 7.4
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 392 KPDPE-----KHALFIDVQPSATSQSKHAARFLRLAMASIMDILK 431
KP E H L ID+ S S A F R A+A+I DIL
Sbjct: 50 KPTAEERAGVPHHL-IDILDPTESYS--VADFQRDALAAIADILA 91
>gnl|CDD|224208 COG1289, COG1289, Predicted membrane protein [Function unknown].
Length = 674
Score = 29.3 bits (66), Expect = 7.5
Identities = 9/66 (13%), Positives = 14/66 (21%), Gaps = 2/66 (3%)
Query: 20 FFFFYCCFFIFDFYFFFFFFFF--FFFFFFFVSFSTSSSFFFFFLHLLPLLVLLPLQIEP 77
+ F + L +L L+ LL
Sbjct: 416 LGLLVLLLLLPLIPGLLLLLLLAALLFAAGIRLAKYRLATLGITLLVLFLVGLLGSNGPD 475
Query: 78 RLMPRF 83
+PRF
Sbjct: 476 YDLPRF 481
>gnl|CDD|222582 pfam14184, YrvL, Regulatory protein YrvL. YrvL prevents
expression and activity of the YrvI sigma factor. It
may function as an anti-sigma factor.
Length = 134
Score = 28.0 bits (63), Expect = 7.6
Identities = 8/58 (13%), Positives = 12/58 (20%)
Query: 8 SFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLL 65
S F + F+ F I F F L ++
Sbjct: 31 SLLGFEYESIGALLLFFLIFLILGLPLELFEKVLLKPLLKLRISKWLYKLLAFILEII 88
>gnl|CDD|218966 pfam06271, RDD, RDD family. This family of proteins contain
three highly conserved amino acids: one arginine and
two aspartates, hence the name of RDD family. This
region contains two predicted transmembrane regions.
The arginine occurs at the N terminus of the first
helix and the first aspartate occurs in the middle of
this helix. The molecular function of this region is
unknown. However this region may be involved in
transport of an as yet unknown set of ligands (Bateman
A pers. obs.).
Length = 131
Score = 27.6 bits (62), Expect = 7.7
Identities = 11/44 (25%), Positives = 13/44 (29%)
Query: 28 FIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLL 71
F+ D F + S L LL LLV L
Sbjct: 11 FLIDLLLLSLLLLLIFLLLGALGNLADSGGLLLLLLLLLLLVFL 54
>gnl|CDD|224500 COG1584, COG1584, Predicted membrane protein [Function unknown].
Length = 207
Score = 28.5 bits (64), Expect = 7.9
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 34 FFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLL 71
++ + F F + ++ + F FL L L +LL
Sbjct: 120 WYLILWGIFTLLMFIGTLKSTRALQFVFLSLTVLFLLL 157
>gnl|CDD|173078 PRK14614, PRK14614, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 280
Score = 28.6 bits (64), Expect = 7.9
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 225 DVVIVPNIPMLKN--GTSKDNVTVFTGENGIMKFGLIDK 261
D+ I NIP+ G S D TV G N ++ GL D+
Sbjct: 87 DISITKNIPVAAGLGGGSSDAATVLMGVNELLGLGLSDE 125
>gnl|CDD|216274 pfam01062, Bestrophin, Bestrophin, RFP-TM, chloride channel.
Bestrophin is a 68-kDa basolateral plasma membrane
protein expressed in retinal pigment epithelial cells
(RPE). It is encoded by the VMD2 gene, which is mutated
in Best macular dystrophy, a disease characterized by a
depressed light peak in the electrooculogram. VMD2
encodes a 585-amino acid protein with an approximate
mass of 68 kDa which has been designated bestrophin.
Bestrophin shares homology with the Caenorhabditis
elegans RFP gene family, named for the presence of a
conserved arginine (R), phenylalanine (F), proline (P),
amino acid sequence motif. Bestrophin is a plasma
membrane protein, localised to the basolateral surface
of RPE cells consistent with a role for bestrophin in
the generation or regulation of the EOG light peak.
Bestrophin and other RFP family members represent a new
class of chloride channels, indicating a direct role for
bestrophin in generating the light peak. The VMD2 gene
underlying Best disease was shown to represent the first
human member of the RFP-TM protein family. More than 97%
of the disease-causing mutations are located in the
N-terminal RFP-TM domain implying important functional
properties. The bestrophins are four-pass transmembrane
chloride-channel proteins, and the RFP-TM or bestrophin
domain extends from the N-terminus through approximately
350 amino acids and contains all of the TM domains as
well as nearly all reported disease causing mutations.
Interestingly, the RFP motif is not conserved
evolutionarily back beyond Metazoa, neither is it in
plant members.
Length = 284
Score = 28.6 bits (65), Expect = 8.1
Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 9/49 (18%)
Query: 7 ISFTSFLFPPPQF------FFFFYCCF---FIFDFYFFFFFFFFFFFFF 46
I +T Q + F ++ F F+FFF
Sbjct: 201 IDWTPIPLAYTQLVHRAVYLYCLLLPFGLQDTLGWFTPLFTVLIFYFFF 249
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and
metabolism].
Length = 466
Score = 29.0 bits (65), Expect = 8.2
Identities = 14/60 (23%), Positives = 21/60 (35%)
Query: 27 FFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLLPLQIEPRLMPRFPLF 86
I F F VS ++ + + L L LLVL + + + R PL
Sbjct: 343 TGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLKRPFRLPLA 402
>gnl|CDD|214338 CHL00025, ndhF, NADH dehydrogenase subunit 5.
Length = 741
Score = 29.1 bits (66), Expect = 8.3
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 28 FIFDFYFFFFFFFFFFFFFFF 48
F++ FY F +FFF F
Sbjct: 721 FLYLFYVSIFLLILYFFFSFI 741
>gnl|CDD|224209 COG1290, QcrB, Cytochrome b subunit of the bc complex [Energy
production and conversion].
Length = 381
Score = 28.9 bits (65), Expect = 8.4
Identities = 7/36 (19%), Positives = 9/36 (25%)
Query: 16 PPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSF 51
P +F FY F F + F
Sbjct: 278 PEWYFLPFYAILRAIPSKLGGVLAMFPILILFLLPF 313
>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT)
superfamily [Carbohydrate transport and metabolism /
Amino acid transport and metabolism / General function
prediction only].
Length = 292
Score = 28.7 bits (64), Expect = 8.4
Identities = 10/40 (25%), Positives = 12/40 (30%)
Query: 32 FYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLL 71
F F TS+S + LLPL L
Sbjct: 73 LLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTAL 112
>gnl|CDD|215952 pfam00499, Oxidored_q3, NADH-ubiquinone/plastoquinone
oxidoreductase chain 6.
Length = 140
Score = 28.0 bits (63), Expect = 8.6
Identities = 13/62 (20%), Positives = 18/62 (29%), Gaps = 8/62 (12%)
Query: 20 FFFFYCCFFIFDFYFFFFFFFFFF--------FFFFFVSFSTSSSFFFFFLHLLPLLVLL 71
+F + F F + VS S + F F LL+LL
Sbjct: 22 LLSLSLSLLLFLLGSSWLGLILFLVYVGGILVLFLYVVSLSPNEKFKFKKKSKFLLLLLL 81
Query: 72 PL 73
L
Sbjct: 82 LL 83
>gnl|CDD|133462 cd06852, GT_MraY, Phospho-N-acetylmuramoyl-pentapeptide-transferase
(mraY) is an enzyme responsible for the formation of the
first lipid intermediate in the synthesis of bacterial
cell wall peptidoglycan. It catalyzes the formation of
undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-
pentapeptide from UDP-MurNAc-pentapeptide and
undecaprenyl-phosphate. It is an integral membrane
protein with possibly ten transmembrane domains.
Length = 280
Score = 28.6 bits (65), Expect = 8.6
Identities = 8/51 (15%), Positives = 11/51 (21%), Gaps = 3/51 (5%)
Query: 5 LQISF---TSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFS 52
LQ + L F + + F F V S
Sbjct: 76 LQFLIAIVFALLLYYFNGSGTLITLPFFKNGLIDLGILYIPFAIFVIVGSS 126
>gnl|CDD|177125 MTH00050, ATP6, ATP synthase F0 subunit 6; Validated.
Length = 170
Score = 27.9 bits (63), Expect = 9.0
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTS---SSFFFFFLHLLPL 67
F F Y +I+ + F F F F F+S S S FF +P+
Sbjct: 35 FLFLLYRLPYIYSPF-LFVVFLFVVVFPLFISLFLSRVFDSLNEFFSSFVPV 85
>gnl|CDD|198110 smart01042, Brr6_like_C_C, Di-sulfide bridge nucleocytoplasmic
transport domain. Brr6_like_C_C is the highly conserved
C-terminal region of a group of proteins found in fungi.
It carries four highly conserved cysteine residues. It
is suggested that members of the family interact with
each other via di-sulfide bridges to form a complex
which is involved in nucleocytoplasmic transport.
Length = 134
Score = 27.6 bits (62), Expect = 9.0
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 39 FFFFFFFFFFVSFSTSSSFFFF 60
F F+++ +F F+
Sbjct: 112 LLFILILILLSIFASNFAFGFY 133
>gnl|CDD|214459 MTH00211, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 597
Score = 28.8 bits (65), Expect = 9.2
Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 7/58 (12%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLLPLQIE 76
F F + V S FF+ L+PLL+ L +E
Sbjct: 5 FNSGFLLILILLLLPLLLPLNNSKLHIKKAVKLS-------FFISLIPLLIFLDQGLE 55
>gnl|CDD|226888 COG4485, COG4485, Predicted membrane protein [Function unknown].
Length = 858
Score = 29.0 bits (65), Expect = 9.5
Identities = 8/43 (18%), Positives = 10/43 (23%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFF 61
F F F F FF+ S F+
Sbjct: 299 FPLALIVLLFTLKSIRFRVKRLFAGLTAFFIISFYSQYLDLFW 341
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.142 0.440
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,297,783
Number of extensions: 3110492
Number of successful extensions: 14558
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10313
Number of HSP's successfully gapped: 770
Length of query: 570
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 468
Effective length of database: 6,413,494
Effective search space: 3001515192
Effective search space used: 3001515192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (27.6 bits)