RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16515
(570 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 3e-05
Identities = 46/338 (13%), Positives = 95/338 (28%), Gaps = 90/338 (26%)
Query: 189 LTWEKVDLSFLPNGSVTFNQRKVFRFDPDQSVGSE---DDVVIVPN---------IPMLK 236
++ + F F+ + V D +S+ S+ D +++ + +L
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQ--DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 237 NGTSKDNVTVFTGENGIMKFG-LIDKYNGRDHLPHWKTD---ACNSLEGSDGSIFPPH-- 290
V F E + + L+ P T +D +F +
Sbjct: 74 KQEEM--VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 291 -----IEKDRT----------LFVYD-----K-----DVCRLLPLVFDKEVET--NGNV- 322
K R + + K DVC +V+ + +
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL------SYKVQCKMDFKIF 185
Query: 323 ---LGYRFTPSKDVFATVE----ENPANDCFCPSPPCAPKGLFNVSLCQYDSPVMLSFPH 375
L +P + V ++ + N K + S+ ++ S P+
Sbjct: 186 WLNLKNCNSP-ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-SIQAELRRLLKSKPY 243
Query: 376 FYLGNQSL--LDAVEGVSKPDPEKHALF-IDVQPSATSQSKHAARFLRLAMASIMDILKV 432
L L V+ + + F + + T++ K + D L
Sbjct: 244 ----ENCLLVLLNVQ-----NAKAWNAFNLSCKILLTTRFK-----------QVTDFLSA 283
Query: 433 KPFVEVTVGQLLWGYEDPLLK--LAKDVVPKEQKLPYE 468
+++ +K L K + + Q LP E
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Score = 42.9 bits (100), Expect = 3e-04
Identities = 49/411 (11%), Positives = 99/411 (24%), Gaps = 141/411 (34%)
Query: 109 VIRIFIYNVTNAD-EFLSVPGTKPVLDEIGPYV-YVQTWEKVDLSFLPNGSVTFNQRKVF 166
+++ F+ V + +FL P Y++ ++ L N + F + V
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR-----LYNDNQVFAKYNVS 132
Query: 167 RFDPDQSVGSEDDVVIVPNIPMLTWEKVDLSFLPNGSVTFNQRKVFRFDPDQSV---GSE 223
R P + ++ + P ++V G
Sbjct: 133 RLQPYLKL---------------------------------RQALLELRPAKNVLIDG-- 157
Query: 224 DDVVIVPNIPMLKNGTSKDNVTVFTGE------------NGI--MKFGLIDKYNGR-DHL 268
+L G+ K T + I + + + L
Sbjct: 158 ----------VL--GSGK---TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 269 PH-WKTDACNSLEGSDGSIFPPH-----IEKDRTLF--------------VYDKDV---- 304
N SD S + R L V +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 305 ---CRLLPLVFDKEVETNGNVLGYR----------FTP--SKDVFATVEENPANDCFCPS 349
C++L K+V + TP K + + D
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD----L 318
Query: 350 PPCAPKGL-FNVSLCQYDSPVMLSFPHFYLGNQSLLDAVEGVSKPDPEKHALFIDVQPSA 408
P +S+ L+ + D + + + ++V A
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWK--HVNCDKLTTIIE-------SSLNVLEPA 369
Query: 409 TSQSKHAARFLRLAMASIMDILKVKPFVEVTVGQLLWG---YEDPLLKLAK 456
+ F RL++ + + L+W D ++ + K
Sbjct: 370 EYR----KMFDRLSV--FPPSAHIPT----ILLSLIWFDVIKSDVMVVVNK 410
Score = 42.5 bits (99), Expect = 4e-04
Identities = 56/383 (14%), Positives = 109/383 (28%), Gaps = 126/383 (32%)
Query: 54 SSSFFFFFLHL----LPLLVLLPLQIEPRLMPRFPLFQQLTLREGAQVFEMWRKPPVHPV 109
S +L LP VL PR + +R+G ++ W+
Sbjct: 303 VKSLLLKYLDCRPQDLPREVL---TTNPRRLSIIAES----IRDGLATWDNWKHV----- 350
Query: 110 IRIFIYNVTNADEFLSVPGTKPVLDEIGPYVYVQTWEKVDLSFLPNGSVTFNQRKVFRFD 169
N D+ ++ + L+ + P Y + ++ LS VF
Sbjct: 351 ---------NCDKLTTI--IESSLNVLEPAEYRKMFD--RLS-------------VFP-- 382
Query: 170 PDQSVGSEDDVVIVPNIPMLT----WEKVDLSFLPNGSVTFNQRKVFRFDPDQSVGSEDD 225
+IP + W V S + ++ + P +S S
Sbjct: 383 --------PSA----HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS--- 427
Query: 226 VVIVPNIPMLKNGTSKDNVTVFTGENGIMKFGLIDKYNGRDHLPHWKTDACNSLEGSDGS 285
+P+I + ++ + ++D YN D
Sbjct: 428 ---IPSIYLELKVKLENEYA--------LHRSIVDHYNIPKTFDSDDL----IPPYLDQY 472
Query: 286 IF---PPHIEKDRTLFVYDKDVCRLLPLVFDKEVETNGNVLGYRFTPSKDVFATVEENPA 342
+ H++ ++ L +VF L +RF K +
Sbjct: 473 FYSHIGHHLKNIEH---PERM--TLFRMVF----------LDFRFLEQKIRHDS------ 511
Query: 343 NDCFCPSPPCAPKGLFNV--SLCQYDSPVMLSFPHFYLGNQSLLDAVEGVSKPDPEKHAL 400
+ A + N L Y + + P + ++LD + P E++ +
Sbjct: 512 ------TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL-----PKIEENLI 560
Query: 401 FIDVQPSATSQSKHAARFLRLAM 423
SK+ LR+A+
Sbjct: 561 ----------CSKY-TDLLRIAL 572
Score = 38.3 bits (88), Expect = 0.007
Identities = 81/534 (15%), Positives = 155/534 (29%), Gaps = 168/534 (31%)
Query: 75 IEPRLMPRFPLFQQLTLREGAQVFE---MWRKPPVHPVIRIFIYNVTNADEFLSVPG--- 128
+P +M R + Q+ L QVF + R P +R + + A + + + G
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL-KLRQALLELRPA-KNVLIDGVLG 160
Query: 129 ------------TKPVLDEIGPYVYVQTWEKVDLSFLPNGSVTFNQRKVFRFDPDQSVGS 176
+ V ++ ++ W + P + Q+ +++ DP+ + S
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIF---WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 177 EDDVVIVPNIPM-LTWEKVDLSFL------PNG-----SVTFNQRKVFR-FDP------- 216
+ NI + + + +L L N +V K + F+
Sbjct: 218 DHS----SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--QNAKAWNAFNLSCKILLT 271
Query: 217 --DQSVGSEDDVVIVPNIPMLKNGTSKDNVTVFTGENGIMKFGLIDKY------------ 262
+ V +I + + T + L+ KY
Sbjct: 272 TRFKQVTDFLSAATTTHISL------DHHSMTLTPDEVK---SLLLKYLDCRPQDLPREV 322
Query: 263 ----------------NGRDHLPHWKTDACNSLEGS-DGSI--FPPHIEKDR--TLFVYD 301
+G +WK C+ L + S+ P + L V+
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 302 KDV---CRLLPLVFDKEVETNGNVLGYRFTPSKDVFATVEENPANDCFCPSPPCAPKGLF 358
LL L++ +++ DV V + L
Sbjct: 383 PSAHIPTILLSLIWFDVIKS-------------DVMVVVNK-----------------LH 412
Query: 359 NVSLCQYDS-PVMLSFPHFYLGNQSLLDAVEGVSKPDPEKHALFID-VQPSATSQSK--- 413
SL + +S P YL + L+ + H +D T S
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLEN-------EYALHRSIVDHYNIPKTFDSDDLI 465
Query: 414 ----------HAARFLRLA-MASIMDILKVK----PFVEVTV--GQLLWGYEDPLLKLAK 456
H L+ M + ++ F+E + W +L +
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 457 DVV----------PK-EQKL-PYEEFGLLYGGIDGLPAEVTDLLRVATTAPASA 498
+ PK E+ + +F L + + ++ TDLLR+A A A
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDF-LPKIEENLICSKYTDLLRIALMAEDEA 578
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.003
Identities = 52/270 (19%), Positives = 90/270 (33%), Gaps = 117/270 (43%)
Query: 124 LSVPGTKPVLDEIGPYV-----YVQTWEKVDLSFLPNGS----VT--------FNQ--RK 164
LS+ +++ YV ++ ++V++S L NG+ V+ N RK
Sbjct: 339 LSISNLT--QEQVQDYVNKTNSHLPAGKQVEIS-LVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 165 VF-RFDPDQSVGSEDDVVIVPNIPMLTWEKVDLSFLPNGSVTFNQRK-VF--RFDPDQSV 220
DQS IP F++RK F RF P
Sbjct: 396 AKAPSGLDQS-----------RIP------------------FSERKLKFSNRFLP---- 422
Query: 221 GSEDDVVIVP-NIPMLKNGTS-------KDNVTVFTGENGIMKFGLIDKYNGRDHLPHWK 272
V P + +L + K+NV+ F ++ ++ + D ++G D
Sbjct: 423 ------VASPFHSHLLVPASDLINKDLVKNNVS-FNAKD--IQIPVYDTFDGSD------ 467
Query: 273 TDACNSLEGSDGSIFPPHIEKDRTLFVYDKDVCRLLPLVFDKEVETN---------GNV- 322
L GSI ++ + RL P+ ++ + G
Sbjct: 468 ------LRVLSGSISERIVD----------CIIRL-PVKWETTTQFKATHILDFGPGGAS 510
Query: 323 -LGYRFTPSKD------VFA-TVEENPAND 344
LG +KD + A T++ NP +D
Sbjct: 511 GLGVLTHRNKDGTGVRVIVAGTLDINPDDD 540
Score = 37.0 bits (85), Expect = 0.019
Identities = 37/235 (15%), Positives = 74/235 (31%), Gaps = 85/235 (36%)
Query: 323 LGYRF---TPSKDV-FATVEENPANDCFCPSPPCAPKGLFNVSLCQYDSPVMLSFPHFYL 378
+G R P+ + + +E++ N+ PSP MLS
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSP-------------------MLS------ 340
Query: 379 GNQSLLDAVEGVSKPDPEKHALFIDVQPSATSQSKHAARFLRLAMASIMDILKVKP--FV 436
+ +++ + + ++ T+ A + + ++ L V
Sbjct: 341 --------ISNLTQEQVQDY---VN----KTNSHLPAGKQVEIS-------LVNGAKNLV 378
Query: 437 EVTVG--QLLWGYEDPLLKLAKDVVPKEQKLPYEE----FGLLYGGIDGLPAEV---TDL 487
V+ G Q L+G L K + ++P+ E F + LP + L
Sbjct: 379 -VS-GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF-----LPVASPFHSHL 431
Query: 488 LRVATTAPASAKVVL----LYILFTAGTLLLITAVFCL-----IRNSSRQSTLSL 533
L PAS + + F A + + V+ +R S + +
Sbjct: 432 L-----VPASDLINKDLVKNNVSFNAKDIQI--PVYDTFDGSDLRVLSGSISERI 479
Score = 33.1 bits (75), Expect = 0.30
Identities = 31/149 (20%), Positives = 48/149 (32%), Gaps = 50/149 (33%)
Query: 415 AARFLRLAMA-SIMDILKVKPFVEVTV------GQLLW-GYEDPLLKLAKDVVPKEQKLP 466
A + SI+DI+ P V +T+ G+ + Y + + D K +K+
Sbjct: 1649 ADNHFKDTYGFSILDIVINNP-VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI- 1706
Query: 467 YEEFG-----LLYGGIDGLPAEVTDLLRVAT--TAPASAKVVLLYILFTAGTLLLITAVF 519
++E + LL AT T PA L A F
Sbjct: 1707 FKEINEHSTSYTFRS----EKG---LLS-ATQFTQPA---------LTLME-----KAAF 1744
Query: 520 CLIR---NSSRQSTL---SL-EGTAHYAA 541
++ +T SL E YAA
Sbjct: 1745 EDLKSKGLIPADATFAGHSLGE----YAA 1769
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane,
phospho signal sequence, membrane, ribosome, transport;
8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Length = 490
Score = 34.3 bits (78), Expect = 0.11
Identities = 13/52 (25%), Positives = 18/52 (34%)
Query: 4 SLQISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSS 55
++ S L PP FF F Y F +F + + S SS
Sbjct: 341 AVPTFPLSLLAPPTSFFKGVTQQPLTFITYSAFILVTGIWFADKWQAISGSS 392
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 33.4 bits (76), Expect = 0.23
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 13 LFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFF 58
LF P+ +F + Y F F FF FF + + F
Sbjct: 216 LFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVF 261
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 32.5 bits (74), Expect = 0.24
Identities = 2/33 (6%), Positives = 9/33 (27%)
Query: 27 FFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFF 59
+ + +Y + F + + +
Sbjct: 80 YESWSYYRYDFGIYDDDPEIITLERREFDAAVN 112
Score = 32.1 bits (73), Expect = 0.33
Identities = 3/41 (7%), Positives = 11/41 (26%)
Query: 30 FDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVL 70
++ + ++ + F + + F V
Sbjct: 80 YESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVN 120
Score = 31.4 bits (71), Expect = 0.50
Identities = 2/41 (4%), Positives = 10/41 (24%)
Query: 28 FIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLL 68
+ ++ + F + ++ L +
Sbjct: 79 QYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFV 119
Score = 29.1 bits (65), Expect = 3.1
Identities = 7/51 (13%), Positives = 13/51 (25%), Gaps = 3/51 (5%)
Query: 14 FPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFF---FFFVSFSTSSSFFFFF 61
Q + ++ +DF + F S F F+
Sbjct: 72 LEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVNFY 122
>3a5p_A Haemagglutinin I; lectin, sugar binding protein; 1.82A {Physarum
polycephalum}
Length = 104
Score = 30.9 bits (69), Expect = 0.33
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 116 NVTNADEFLSVPGTKPV-LDEIGPYVYVQTW 145
N + +++V G P+ EIGP Q+W
Sbjct: 24 NSSTVPRYVTVTGYAPITFSEIGPKTVHQSW 54
>1zoy_C Large cytochrome binding protein, FAD-binding protein; succinate,
ubiquinone oxidoreductase, mitochondrial respiratory
complex II; HET: FAD HEM EPH UQ1; 2.40A {Sus scrofa}
PDB: 1zp0_C* 3abv_C* 3ae1_C* 3ae2_C* 3ae3_C* 3ae4_C*
3ae5_C* 3ae6_C* 3ae7_C* 3ae8_C* 3ae9_C* 3aea_C* 3aeb_C*
3aec_C* 3aed_C* 3aee_C* 3aef_C* 3aeg_C* 3sfd_C* 3sfe_C*
Length = 140
Score = 30.3 bits (68), Expect = 0.71
Identities = 5/52 (9%), Positives = 10/52 (19%), Gaps = 5/52 (9%)
Query: 19 FFFFFYCCFFIFDFYFFFFFFFFFF-FFFFFVSFSTSSSFFFFFL----HLL 65
F F+ + + F + HL+
Sbjct: 56 FGLSALLLPGNFESHLELVKSLCLGPTLIYTAKFGIVFPLMYHTWNGIRHLI 107
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A
{Geobacillus stearothermophilus} PDB: 3ayg_A*
Length = 800
Score = 30.4 bits (68), Expect = 2.1
Identities = 8/46 (17%), Positives = 18/46 (39%)
Query: 27 FFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLLP 72
+ FF+ F FF +F+ + + ++ +HL +
Sbjct: 472 LLFYSAIAVPFFYIFAFFIQPDTNFTMADFWRWWIIHLWVEGIFEV 517
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome,
protein EXIT tunnel, cotranslational protein
translocation, protein conducting channel; 6.48A {Canis
lupus familiaris}
Length = 476
Score = 29.9 bits (67), Expect = 2.2
Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 8 SFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSS 56
+L PP F Y F FF ++ S SS+
Sbjct: 340 GLCHYLSPPESFGSVLEDPVHAV-VYIVFMLGSCAFFSKTWIEVSGSSA 387
>2p4o_A Hypothetical protein; putative lactonase, structural genomics,
joint center for ST genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme}
SCOP: b.68.6.3
Length = 306
Score = 29.5 bits (66), Expect = 2.7
Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 15/123 (12%)
Query: 149 DLSFLPNGS---VTFNQRKVFRFDPDQSVGSEDDVVIVPNIPMLTWEKVDLSFLPNGS-- 203
+L+ P+G+ ++ PD G++ V L+F NG
Sbjct: 36 NLASAPDGTIFVTNHEVGEIVSITPD---GNQQIHATVEGKVS------GLAFTSNGDLV 86
Query: 204 -VTFNQRKVFRFDPDQSVGSEDDVVIVPNIPMLKNGTSKDNVTVFTGENGIMKFGLIDKY 262
+N + +S G+ + ++ +P+ L T + T ++ LID
Sbjct: 87 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV 146
Query: 263 NGR 265
Sbjct: 147 QPS 149
>1xeb_A Hypothetical protein PA0115; midwest center for structural
genomics, MCSG, structural GEN protein structure
initiative, PSI, APC22065; 2.35A {Pseudomonas
aeruginosa} SCOP: d.108.1.1
Length = 150
Score = 28.2 bits (63), Expect = 3.8
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 427 MDI-LKVKPFVEVTVGQLLWGYEDPLLKLAKDVVPKEQKLPYEEF 470
M + K ++T+ +L Y LL+L +V EQK PY+E
Sbjct: 1 MSLDWTCKHHADLTLKEL---YA--LLQLRTEVFVVEQKCPYQEV 40
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY,
membrane protein, protein channels, protein transport;
3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1
PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Length = 436
Score = 28.7 bits (65), Expect = 5.6
Identities = 5/49 (10%), Positives = 10/49 (20%)
Query: 7 ISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSS 55
+ ++ P Y F F+V +
Sbjct: 293 VDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLD 341
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 28.6 bits (65), Expect = 6.1
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 392 KPDPE-----KHALFIDVQPSATSQSKHAARFLRLAMASIMDILK 431
KP+ E H L +D++ + + S AA F R A+A + DI
Sbjct: 56 KPNAEELLAAPHRL-LDIRDPSQAYS--AADFRRDALAEMADITA 97
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 28.3 bits (64), Expect = 6.5
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 8/45 (17%)
Query: 392 KPDPE-----KHALFIDVQPSATSQSKHAARFLRLAMASIMDILK 431
KP E H L ID++ A S S AA F A+A++
Sbjct: 51 KPSRELLARYPHRL-IDIRDPAESYS--AAEFRADALAAMAKATA 92
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 28.5 bits (63), Expect = 7.1
Identities = 9/69 (13%), Positives = 20/69 (28%), Gaps = 9/69 (13%)
Query: 163 RKVFRFDPDQSVGSEDDVVI-----VPNIPMLTWEKVDLSFLPNGS-VTFNQRKVFRFDP 216
K+F D ++D ++ P + + + LP + +
Sbjct: 115 AKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMI-- 172
Query: 217 DQSVGSEDD 225
+SV
Sbjct: 173 -KSVKRAYH 180
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr
B556(FDN) subunit; oxidoreductase, selenium,
selenocysteine, seCys, molybdenum; HET: MGD HEM CDL;
1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Length = 217
Score = 27.8 bits (61), Expect = 7.4
Identities = 11/123 (8%), Positives = 26/123 (21%), Gaps = 25/123 (20%)
Query: 5 LQISFTSFLFPPPQFFFFFYCCF--FIFDFYFFFFFFFFFFFFFFFVSFSTSS------- 55
+ F + + F F F F F F
Sbjct: 33 ISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHNIPDKKDIPWLLNI 92
Query: 56 -SFFFFFLHLLP---------------LLVLLPLQIEPRLMPRFPLFQQLTLREGAQVFE 99
H + ++ ++ + + ++ P F Q + +
Sbjct: 93 VEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSL 152
Query: 100 MWR 102
+
Sbjct: 153 LIH 155
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 8.2
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 8/35 (22%)
Query: 527 RQSTLSLEGTAH-YAANDDISRQKKAMANNIKSDM 560
+Q+ L+ + YA DD A+A IK+ M
Sbjct: 19 KQALKKLQASLKLYA--DD---SAPALA--IKATM 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.142 0.440
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,966,543
Number of extensions: 557914
Number of successful extensions: 1811
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1687
Number of HSP's successfully gapped: 56
Length of query: 570
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 471
Effective length of database: 3,937,614
Effective search space: 1854616194
Effective search space used: 1854616194
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.6 bits)