RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16515
         (570 letters)



>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC
          {Escherichia coli [TaxId: 562]}
          Length = 129

 Score = 33.7 bits (77), Expect = 0.017
 Identities = 4/55 (7%), Positives = 12/55 (21%)

Query: 7  ISFTSFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFF 61
          +S            +         + +         FF  F +    ++  +   
Sbjct: 32 VSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVV 86


>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit,
           N-terminal domain {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 261

 Score = 30.9 bits (70), Expect = 0.38
 Identities = 6/26 (23%), Positives = 8/26 (30%)

Query: 23  FYCCFFIFDFYFFFFFFFFFFFFFFF 48
            +  F   D    F F      F F+
Sbjct: 221 MHSYFIFKDLVTVFLFMLILALFVFY 246



 Score = 26.7 bits (59), Expect = 8.3
 Identities = 7/27 (25%), Positives = 8/27 (29%), Gaps = 4/27 (14%)

Query: 30  FDFYF----FFFFFFFFFFFFFFVSFS 52
              YF        F F      FV +S
Sbjct: 221 MHSYFIFKDLVTVFLFMLILALFVFYS 247


>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum
           pernix [TaxId: 56636]}
          Length = 132

 Score = 28.0 bits (62), Expect = 1.5
 Identities = 6/72 (8%), Positives = 18/72 (25%)

Query: 18  QFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVLLPLQIEP 77
               +    +  +       +     +    +  +   +     L  L L  L+ L    
Sbjct: 47  VIILWADYAYRAYKSGDPAGYVKKTLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFL 106

Query: 78  RLMPRFPLFQQL 89
           R++       + 
Sbjct: 107 RILLIISRGSKF 118


>d1xeba_ d.108.1.1 (A:) Hypothetical protein PA0115 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 149

 Score = 28.2 bits (62), Expect = 1.6
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)

Query: 431 KVKPFVEVTVGQLLWGYEDPLLKLAKDVVPKEQKLPYEEF 470
             K   ++T+ +L   Y   LL+L  +V   EQK PY+E 
Sbjct: 5   TCKHHADLTLKEL---YA--LLQLRTEVFVVEQKCPYQEV 39


>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit,
           N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 246

 Score = 28.5 bits (64), Expect = 1.9
 Identities = 4/26 (15%), Positives = 6/26 (23%)

Query: 23  FYCCFFIFDFYFFFFFFFFFFFFFFF 48
           F+  + I D                F
Sbjct: 206 FHPYYTIKDILGALLLILALMLLVLF 231


>d1wz3a1 d.15.1.7 (A:10-93) Autophagy-related protein 12b (APG12b)
           {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 84

 Score = 25.7 bits (57), Expect = 5.1
 Identities = 3/31 (9%), Positives = 10/31 (32%)

Query: 146 EKVDLSFLPNGSVTFNQRKVFRFDPDQSVGS 176
           +K+ +     G     ++  F+        +
Sbjct: 1   QKIVVHLRATGGAPILKQSKFKVSGSDKFAN 31



 Score = 25.7 bits (57), Expect = 5.1
 Identities = 3/31 (9%), Positives = 10/31 (32%)

Query: 192 EKVDLSFLPNGSVTFNQRKVFRFDPDQSVGS 222
           +K+ +     G     ++  F+        +
Sbjct: 1   QKIVVHLRATGGAPILKQSKFKVSGSDKFAN 31


>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic
          domain {Escherichia coli [TaxId: 562]}
          Length = 249

 Score = 27.2 bits (59), Expect = 5.6
 Identities = 6/33 (18%), Positives = 6/33 (18%)

Query: 16 PPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFF 48
          P  F  FF            F    F       
Sbjct: 33 PRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGG 65


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
          562]}
          Length = 417

 Score = 27.0 bits (58), Expect = 6.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 37 FFFFFFFFFFFFVSFSTSSSFFFFFLH 63
          F+ F  FFFF+F        FF  +LH
Sbjct: 9  FWMFGLFFFFYFFIMGAYFPFFPIWLH 35


>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I
           {Escherichia coli [TaxId: 562]}
          Length = 501

 Score = 27.2 bits (60), Expect = 6.6
 Identities = 7/61 (11%), Positives = 14/61 (22%), Gaps = 2/61 (3%)

Query: 11  SFLFPPPQFFFFFYCCFFIFDFYFFFFFFFFFFFFFFFVSFSTSSSFFFFFLHLLPLLVL 70
           SF F                     +  +       +  S      ++ + L L  +   
Sbjct: 94  SFWFTVVGVILVNVSLGVGEFAQTGWLAYPPLSGIEY--SPGVGVDYWIWSLQLSGIGTT 151

Query: 71  L 71
           L
Sbjct: 152 L 152


>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter,
          permease protein {Methanosarcina acetivorans [TaxId:
          2214]}
          Length = 248

 Score = 26.8 bits (58), Expect = 7.5
 Identities = 7/28 (25%), Positives = 9/28 (32%)

Query: 34 FFFFFFFFFFFFFFFVSFSTSSSFFFFF 61
          F F F     F F F++ S         
Sbjct: 4  FVFSFLLLVLFLFIFLTLSNMIFEQITE 31


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.142    0.440 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,231,741
Number of extensions: 111572
Number of successful extensions: 711
Number of sequences better than 10.0: 1
Number of HSP's gapped: 588
Number of HSP's successfully gapped: 54
Length of query: 570
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 480
Effective length of database: 1,171,896
Effective search space: 562510080
Effective search space used: 562510080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.3 bits)