BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16516
(179 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PI1|A Chain A, Crystal Structure Of A Human Mob1 Protein; Toward
Understanding Mob-Regulated Cell Cycle Pathways
Length = 185
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 71/138 (51%), Gaps = 35/138 (25%)
Query: 44 LERKLPDIDLRLLVEMPQGVDFNEWLASHSMKSHGIPGFLLFTLGFSYVALNTNVFSSVS 103
+E L +LR V +P+G D NEW+A V+
Sbjct: 1 MEATLGSGNLRQAVMLPEGEDLNEWIA-------------------------------VN 29
Query: 104 AIAIFDNINLIYGTISEFCTMSECPDMS-GPSFRTYLWVDEKGKKSRI--AAPQYVDYVM 160
+ F+ IN++YGTI+EFCT + CP MS GP + Y W D K I +AP+Y+DY+M
Sbjct: 30 TVDFFNQINMLYGTITEFCTEASCPVMSAGPRYE-YHWADGTNIKKPIKCSAPKYIDYLM 88
Query: 161 TYIQKTIGDESNFPTKYG 178
T++Q + DE+ FP+K G
Sbjct: 89 TWVQDQLDDETLFPSKIG 106
>pdb|1R3B|A Chain A, Solution Structure Of Xenopus Laevis Mob1
Length = 202
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 67/130 (51%), Gaps = 35/130 (26%)
Query: 52 DLRLLVEMPQGVDFNEWLASHSMKSHGIPGFLLFTLGFSYVALNTNVFSSVSAIAIFDNI 111
+LR V +P+G D NEW+A V+ + F+ I
Sbjct: 26 NLRQAVMLPEGEDLNEWIA-------------------------------VNTVDFFNQI 54
Query: 112 NLIYGTISEFCTMSECPDMS-GPSFRTYLWVDEKGKKSRI--AAPQYVDYVMTYIQKTIG 168
N++YGTI+EFCT S C MS GP + Y W D K I +AP+Y+DY+MT++Q +
Sbjct: 55 NMLYGTITEFCTESTCSVMSAGPRYE-YHWADGTNIKKPIKCSAPKYIDYLMTWVQDQLD 113
Query: 169 DESNFPTKYG 178
DE+ FP+K G
Sbjct: 114 DETLFPSKIG 123
>pdb|2HJN|A Chain A, Structural And Functional Analysis Of Saccharomyces
Cerevisiae Mob1
Length = 236
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 32/125 (25%)
Query: 53 LRLLVEMPQGVDFNEWLASHSMKSHGIPGFLLFTLGFSYVALNTNVFSSVSAIAIFDNIN 112
L V++P+G D NEWLA H + ++ IN
Sbjct: 63 LNQAVKLPRGEDENEWLAVH-------------------------------CVDFYNQIN 91
Query: 113 LIYGTISEFCTMSECPDMSGPSFRTYLWVDEKGKKS-RIAAPQYVDYVMTYIQKTIGDES 171
+YG+I+EFC+ CP + YLW +KG+ ++AP+YV+ + + Q DES
Sbjct: 92 XLYGSITEFCSPQTCPRXIATNEYEYLWAFQKGQPPVSVSAPKYVECLXRWCQDQFDDES 151
Query: 172 NFPTK 176
FP+K
Sbjct: 152 LFPSK 156
>pdb|1KCW|A Chain A, X-Ray Crystal Structure Of Human Ceruloplasmin At 3.0
Angstroms
Length = 1046
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 1 MWTVLVDSRRLCVDTALGRKARRRDKETSLCSDDPKLYLEETVLERK---LPDIDLRLLV 57
++T L+ ++C +L R++D D + YL TV + L + ++R+
Sbjct: 530 IFTGLIGPMKICKKGSLHANGRQKDV-------DKEFYLFPTVFDENESLLLEDNIRMFT 582
Query: 58 EMPQGVDFNEWLASHSMKSHGIPGFL 83
P VD + S K H + GF+
Sbjct: 583 TAPDQVDKEDEDFQESNKMHSMNGFM 608
>pdb|2J5W|A Chain A, Ceruloplasmin Revisited: Structural And Functional Roles
Of Various Metal Cation Binding Sites
Length = 1065
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 1 MWTVLVDSRRLCVDTALGRKARRRDKETSLCSDDPKLYLEETVLERK---LPDIDLRLLV 57
++T L+ ++C +L R++D D + YL TV + L + ++R+
Sbjct: 549 IFTGLIGPMKICKKGSLHANGRQKDV-------DKEFYLFPTVFDENESLLLEDNIRMFT 601
Query: 58 EMPQGVDFNEWLASHSMKSHGIPGFL 83
P VD + S K H + GF+
Sbjct: 602 TAPDQVDKEDEDFQESNKMHSMNGFM 627
>pdb|4E9K|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacova_04221)
From Bacteroides Ovatus Atcc 8483 At 2.31 A Resolution
Length = 241
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 97 NVFSSVSAIAIFDNINLIYGTISEF-----CTMSECPDMSGPSFR 136
N+ + S I FD ++ YG S+ CT+ +CPD + +R
Sbjct: 45 NLLTDASGIFEFDCVSSTYGFYSDSFAFTNCTVEDCPDFASYDYR 89
>pdb|1XYZ|A Chain A, A Common Protein Fold And Similar Active Site In Two
Distinct Families Of Beta-Glycanases
pdb|1XYZ|B Chain B, A Common Protein Fold And Similar Active Site In Two
Distinct Families Of Beta-Glycanases
Length = 347
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 116 GTISEFCTMSECPDMSGPSFRTYLWVDEKGKKSRIAAPQYVDYVMTYIQKTIGDESNFPT 175
G I E+ +EC D SG R+ +W + G+ Y+DY Y ++ D F
Sbjct: 145 GKIVEWDVANECMDDSGNGLRSSIWRNVIGQ-------DYLDYAFRYAREADPDALLFYN 197
Query: 176 KY 177
Y
Sbjct: 198 DY 199
>pdb|3TC9|A Chain A, Crystal Structure Of A Hypothetical Hydrolase (Bt_3476)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.23 A
Resolution
pdb|3TC9|B Chain B, Crystal Structure Of A Hypothetical Hydrolase (Bt_3476)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.23 A
Resolution
Length = 430
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 140 WVDEKGKKSRIAAPQYVDYVMTYIQKTIGDESNF 173
WVD GKK+R AP+ +V K DE +F
Sbjct: 321 WVDGVGKKARXHAPRQGTFVKNPAYKGSSDEYDF 354
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,322,769
Number of Sequences: 62578
Number of extensions: 201662
Number of successful extensions: 410
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 17
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)