Query psy16516
Match_columns 179
No_of_seqs 124 out of 347
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 23:19:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0440|consensus 100.0 1.2E-45 2.5E-50 315.9 8.4 126 19-179 39-165 (243)
2 PF03637 Mob1_phocein: Mob1/ph 100.0 1E-42 2.2E-47 283.5 8.3 108 41-179 1-108 (175)
3 KOG1903|consensus 100.0 4.3E-39 9.4E-44 268.2 9.3 129 16-178 10-141 (217)
4 KOG1852|consensus 99.2 2.1E-12 4.5E-17 108.6 1.9 127 19-177 11-146 (223)
5 COG4476 Uncharacterized protei 23.6 40 0.00088 26.0 1.0 18 100-117 15-32 (90)
6 COG3024 Uncharacterized protei 22.9 28 0.00062 25.4 0.0 13 61-73 34-46 (65)
7 PRK00418 DNA gyrase inhibitor; 16.1 47 0.001 23.9 -0.1 17 61-81 33-49 (62)
8 PF13511 DUF4124: Domain of un 14.6 1.1E+02 0.0024 20.1 1.4 12 136-147 14-25 (60)
9 PRK01343 zinc-binding protein; 12.4 80 0.0017 22.4 0.2 17 61-81 32-48 (57)
10 PF01255 Prenyltransf: Putativ 11.4 2E+02 0.0043 24.3 2.4 40 73-112 173-212 (223)
No 1
>KOG0440|consensus
Probab=100.00 E-value=1.2e-45 Score=315.86 Aligned_cols=126 Identities=47% Similarity=0.894 Sum_probs=111.1
Q ss_pred ccccCCCCCCCCCCCCCcchhhhHHhhhhCCC-CchhhhhcCCCCCCccchhhhcccccCCCCcchhhccccceeecccc
Q psy16516 19 RKARRRDKETSLCSDDPKLYLEETVLERKLPD-IDLRLLVEMPQGVDFNEWLASHSMKSHGIPGFLLFTLGFSYVALNTN 97 (179)
Q Consensus 19 ~~~~~~~k~~~~~~~~~~~yl~~~~~~~~l~~-gnl~~lV~~P~gvD~nEWLA~h~~~~~~~~~~~~~~~~~~~v~~~~~ 97 (179)
++.|+++..++.......+|+.+..+ ++ |||+++|+||+|+|+|||||+|+
T Consensus 39 ~~~~~k~~~~~~s~~~~~~~~~e~~l----~s~g~l~~aV~LP~G~D~nEWlA~nt------------------------ 90 (243)
T KOG0440|consen 39 KPFRKKEASASLSVRPQAKYLAEATL----GSSGNLREAVKLPEGEDLNEWLAVNT------------------------ 90 (243)
T ss_pred ccccccccCcccCccHHHHHHHHHhh----cccccHHHHhcCCCCCchhhHHHHhH------------------------
Confidence 44444444444445555666666654 55 99999999999999999999999
Q ss_pred ccccchhhHHHhhhhhhhhhccCccCCCCCCCCCCCCCceEEEecCCCCccccChHHHHHHHHHHHHHhhCCCCCCCCCC
Q psy16516 98 VFSSVSAIAIFDNINLIYGTISEFCTMSECPDMSGPSFRTYLWVDEKGKKSRIAAPQYVDYVMTYIQKTIGDESNFPTKY 177 (179)
Q Consensus 98 ~~~~~~~v~ff~~in~~ygtise~CT~~tCP~Msa~~~~~YlW~D~~~kp~~l~ApqYId~vm~wi~~~I~De~iFPTk~ 177 (179)
++||++||++||+++||||+++||.|+||+.++|+|+|+++||+++|||||||++|+|||++++||+|||||+
T Consensus 91 -------~~fF~qvN~lYGtitEfCT~~sCp~Msag~~yeY~W~D~~~kp~~~sApqYId~lmtw~q~~~dde~iFPtK~ 163 (243)
T KOG0440|consen 91 -------LDFFNQVNLLYGTITEFCTQQSCPHMSAGPNYEYLWADEKGKPVRVSAPQYIDYLMTWCQNQLDDENIFPTKY 163 (243)
T ss_pred -------HHHHHHHHHHHHHHHHHcCcccCccccCCCcceeeeecccCCccccCchHHHHHHHHHHHHhccccccCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q psy16516 178 GK 179 (179)
Q Consensus 178 g~ 179 (179)
|.
T Consensus 164 g~ 165 (243)
T KOG0440|consen 164 GN 165 (243)
T ss_pred CC
Confidence 84
No 2
>PF03637 Mob1_phocein: Mob1/phocein family; InterPro: IPR005301 Mob1 is an essential Saccharomyces cerevisiae (Baker's yeast) protein, identified from a two-hybrid screen, that binds Mps1p, a protein kinase essential for spindle pole body duplication and mitotic checkpoint regulation. Mob1 contains no known structural motifs; however MOB1 is a member of a conserved gene family and shares sequence similarity with a nonessential yeast gene, MOB2. Mob1 is a phosphoprotein in vivo and a substrate for the Mps1p kinase in vitro. Conditional alleles of MOB1 cause a late nuclear division arrest at restrictive temperature []. This family also includes phocein Q9QYW3 from SWISSPROT, a rat protein that by yeast two hybrid interacts with striatin [].; PDB: 2HJN_A 1PI1_A 1R3B_A.
Probab=100.00 E-value=1e-42 Score=283.53 Aligned_cols=108 Identities=46% Similarity=0.858 Sum_probs=95.6
Q ss_pred hHHhhhhCCCCchhhhhcCCCCCCccchhhhcccccCCCCcchhhccccceeeccccccccchhhHHHhhhhhhhhhccC
Q psy16516 41 ETVLERKLPDIDLRLLVEMPQGVDFNEWLASHSMKSHGIPGFLLFTLGFSYVALNTNVFSSVSAIAIFDNINLIYGTISE 120 (179)
Q Consensus 41 ~~~~~~~l~~gnl~~lV~~P~gvD~nEWLA~h~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~ff~~in~~ygtise 120 (179)
++|++++|++|||+++|++|+|+|+|||||+|+ ++||++||++||+++|
T Consensus 1 ~~~~~~~l~~~~l~~~V~lP~g~d~~eWla~~~-------------------------------~~f~~~in~l~~~v~e 49 (175)
T PF03637_consen 1 QQYVQATLGKGNLRTLVKLPKGVDENEWLAVHT-------------------------------VDFFNEINLLYGVVSE 49 (175)
T ss_dssp HHHHHHHCCGG-HHHHCS-STT--HHHHHHHHH-------------------------------HHHHHHHHHHHHHHGG
T ss_pred CHHHHHHHhcCCHHHHhcCcCCCChhhHHHHhh-------------------------------HHHHHHHHHHHhhccC
Confidence 467889999999999999999999999999999 9999999999999999
Q ss_pred ccCCCCCCCCCCCCCceEEEecCCCCccccChHHHHHHHHHHHHHhhCCCCCCCCCCCC
Q psy16516 121 FCTMSECPDMSGPSFRTYLWVDEKGKKSRIAAPQYVDYVMTYIQKTIGDESNFPTKYGK 179 (179)
Q Consensus 121 ~CT~~tCP~Msa~~~~~YlW~D~~~kp~~l~ApqYId~vm~wi~~~I~De~iFPTk~g~ 179 (179)
+||++|||+|+||+.++|+|+|++++|++|||||||+++|+||+++|+||++|||+.|.
T Consensus 50 ~Ct~~tCP~Msag~~~~Ylw~d~~~kp~~~~A~~Yi~~~l~w~~~~l~d~~iFPt~~~~ 108 (175)
T PF03637_consen 50 FCTPETCPTMSAGPNWEYLWADHKKKPVKCSAPQYIDHLLDWIQSQLNDEKIFPTKPGV 108 (175)
T ss_dssp GS-TTTTSSEESSTTCEE-BSSSTTS-BS--HHHHHHHHHHHHHHHHTSTTTSSSSTTS
T ss_pred cCCcccCcCccCCccceeeeeccCCCCcccCHHHHHHHHHHHHHHHccCcccCCCcccc
Confidence 99999999999998899999999889999999999999999999999999999999884
No 3
>KOG1903|consensus
Probab=100.00 E-value=4.3e-39 Score=268.21 Aligned_cols=129 Identities=39% Similarity=0.680 Sum_probs=116.6
Q ss_pred hhcccccCCCCCCCCCCCCCcchhhhHHhhhhCCCC-chhhhhcCCCCCCccchhhhcccccCCCCcchhhccccceeec
Q psy16516 16 ALGRKARRRDKETSLCSDDPKLYLEETVLERKLPDI-DLRLLVEMPQGVDFNEWLASHSMKSHGIPGFLLFTLGFSYVAL 94 (179)
Q Consensus 16 ~~~~~~~~~~k~~~~~~~~~~~yl~~~~~~~~l~~g-nl~~lV~~P~gvD~nEWLA~h~~~~~~~~~~~~~~~~~~~v~~ 94 (179)
+...|+.|.+|+ ...+...|...+-+++.|.+| ||+.+|++|+|+|+|+|||+|+
T Consensus 10 fnK~KTFRPkkk---F~~GT~Rf~LhK~AqAsL~sG~dLr~aV~LPpgEn~nDW~AVHv--------------------- 65 (217)
T KOG1903|consen 10 FNKDKTFRPKKK---FEPGTQRFELHKKAQASLNSGLDLRSAVRLPPGENLNDWLAVHV--------------------- 65 (217)
T ss_pred HccCCccCCCCC---CCCCceeeehHHHHHHHHhcCcchHHhccCCCCCCccceeeeeh---------------------
Confidence 345577777666 455566677777788888887 9999999999999999999999
Q ss_pred cccccccchhhHHHhhhhhhhhhccCccCCCCCCCCCCCCCceEEEecCCC--CccccChHHHHHHHHHHHHHhhCCCCC
Q psy16516 95 NTNVFSSVSAIAIFDNINLIYGTISEFCTMSECPDMSGPSFRTYLWVDEKG--KKSRIAAPQYVDYVMTYIQKTIGDESN 172 (179)
Q Consensus 95 ~~~~~~~~~~v~ff~~in~~ygtise~CT~~tCP~Msa~~~~~YlW~D~~~--kp~~l~ApqYId~vm~wi~~~I~De~i 172 (179)
+||||.||+||||++|+||.++||+|+||+.++|+|+|++. ||+.+|||+|++++||||+.+|+||.+
T Consensus 66 ----------VDFFNRiNLiYGTise~Cte~sCP~MsGG~rYEY~WqD~~~ykkPt~L~Ap~Ym~lLMDWIE~~INnE~v 135 (217)
T KOG1903|consen 66 ----------VDFFNRINLIYGTISEFCTETSCPVMSGGPRYEYRWQDERKYKKPTALSAPRYMALLMDWIEVQINNEEV 135 (217)
T ss_pred ----------hhhhhhhHhhhhhHhhhccccCCCcccCCCcceeEecccccccCCccCCcHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999998899999999874 999999999999999999999999999
Q ss_pred CCCCCC
Q psy16516 173 FPTKYG 178 (179)
Q Consensus 173 FPTk~g 178 (179)
|||..|
T Consensus 136 FPt~~~ 141 (217)
T KOG1903|consen 136 FPTSVG 141 (217)
T ss_pred ccccCC
Confidence 999877
No 4
>KOG1852|consensus
Probab=99.24 E-value=2.1e-12 Score=108.62 Aligned_cols=127 Identities=13% Similarity=0.247 Sum_probs=105.5
Q ss_pred ccccCCCCCCCCCCCCCcch-------hhhHHhhhhCCC--CchhhhhcCCCCCCccchhhhcccccCCCCcchhhcccc
Q psy16516 19 RKARRRDKETSLCSDDPKLY-------LEETVLERKLPD--IDLRLLVEMPQGVDFNEWLASHSMKSHGIPGFLLFTLGF 89 (179)
Q Consensus 19 ~~~~~~~k~~~~~~~~~~~y-------l~~~~~~~~l~~--gnl~~lV~~P~gvD~nEWLA~h~~~~~~~~~~~~~~~~~ 89 (179)
|+.|..-|...-+.+.+..| .-++|+++.|.. .|...+..+|+|.|.+-|-++|.
T Consensus 11 rrnrpgtk~~df~nwpde~feemdstlavqqyiqq~ikadpsnv~~iltppe~qdegvwkyehl---------------- 74 (223)
T KOG1852|consen 11 RRNRPGTKAQDFYNWPDESFEEMDSTLAVQQYIQQNIKADPSNVDKILTPPEGQDEGVWKYEHL---------------- 74 (223)
T ss_pred eccCCCcchhhhccCCcchHHHHHhHHHHHHHHHHHhccCchhHHHhcCCCcccccchhhHHHH----------------
Confidence 34444444444444443332 335566666654 68999999999999999999998
Q ss_pred ceeeccccccccchhhHHHhhhhhhhhhccCccCCCCCCCCCCCCCceEEEecCCCCccccChHHHHHHHHHHHHHhhCC
Q psy16516 90 SYVALNTNVFSSVSAIAIFDNINLIYGTISEFCTMSECPDMSGPSFRTYLWVDEKGKKSRIAAPQYVDYVMTYIQKTIGD 169 (179)
Q Consensus 90 ~~v~~~~~~~~~~~~v~ff~~in~~ygtise~CT~~tCP~Msa~~~~~YlW~D~~~kp~~l~ApqYId~vm~wi~~~I~D 169 (179)
.+|.-++|.|--.+...|.+++|-.|.|...|-|+++. ++.|.+|||++|..+++|-..-.|+.
T Consensus 75 ---------------rqfc~elnglav~lq~ec~p~tctqmtateqwiflcaa-hktpkecpaidytrhtldgaacllns 138 (223)
T KOG1852|consen 75 ---------------RQFCLELNGLAVKLQSECHPDTCTQMTATEQWIFLCAA-HKTPKECPAIDYTRHTLDGAACLLNS 138 (223)
T ss_pred ---------------HHHHHHhhhHHHHHhcccCchHhhhhhhHhHHHhhhhh-cCCcccCCcccchhhccccccccccC
Confidence 99999999998889999999999999999999999984 88999999999999999999999999
Q ss_pred CCCCCCCC
Q psy16516 170 ESNFPTKY 177 (179)
Q Consensus 170 e~iFPTk~ 177 (179)
.+.||++.
T Consensus 139 nkyfpsrv 146 (223)
T KOG1852|consen 139 NKYFPSRV 146 (223)
T ss_pred CccCCccc
Confidence 99999975
No 5
>COG4476 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.63 E-value=40 Score=26.02 Aligned_cols=18 Identities=22% Similarity=0.564 Sum_probs=15.3
Q ss_pred ccchhhHHHhhhhhhhhh
Q psy16516 100 SSVSAIAIFDNINLIYGT 117 (179)
Q Consensus 100 ~~~~~v~ff~~in~~ygt 117 (179)
.|++|+.|||.|.+-|..
T Consensus 15 E~~~Vl~Ffn~VE~aYE~ 32 (90)
T COG4476 15 EMISVLHFFNAVELAYEK 32 (90)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 367899999999999864
No 6
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.86 E-value=28 Score=25.43 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=10.8
Q ss_pred CCCCccchhhhcc
Q psy16516 61 QGVDFNEWLASHS 73 (179)
Q Consensus 61 ~gvD~nEWLA~h~ 73 (179)
+.+|+|+|+|..-
T Consensus 34 klIDLg~Wa~eey 46 (65)
T COG3024 34 KLIDLGEWAAEEY 46 (65)
T ss_pred hhcchhhhhccCc
Confidence 6799999998763
No 7
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=16.14 E-value=47 Score=23.91 Aligned_cols=17 Identities=41% Similarity=0.778 Sum_probs=12.6
Q ss_pred CCCCccchhhhcccccCCCCc
Q psy16516 61 QGVDFNEWLASHSMKSHGIPG 81 (179)
Q Consensus 61 ~gvD~nEWLA~h~~~~~~~~~ 81 (179)
+.+|+++|+... |+||+
T Consensus 33 k~IDLg~W~~e~----y~Ip~ 49 (62)
T PRK00418 33 QLIDLGEWAAEE----KRIPS 49 (62)
T ss_pred HhhhHHHHHcCC----cccCC
Confidence 468999998764 56654
No 8
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=14.62 E-value=1.1e+02 Score=20.11 Aligned_cols=12 Identities=50% Similarity=0.999 Sum_probs=9.7
Q ss_pred ceEEEecCCCCc
Q psy16516 136 RTYLWVDEKGKK 147 (179)
Q Consensus 136 ~~YlW~D~~~kp 147 (179)
.-|.|+|++|+-
T Consensus 14 ~vYk~~D~~G~v 25 (60)
T PF13511_consen 14 EVYKWVDENGVV 25 (60)
T ss_pred cEEEEECCCCCE
Confidence 489999998853
No 9
>PRK01343 zinc-binding protein; Provisional
Probab=12.36 E-value=80 Score=22.40 Aligned_cols=17 Identities=41% Similarity=0.937 Sum_probs=12.6
Q ss_pred CCCCccchhhhcccccCCCCc
Q psy16516 61 QGVDFNEWLASHSMKSHGIPG 81 (179)
Q Consensus 61 ~gvD~nEWLA~h~~~~~~~~~ 81 (179)
+.+|++.|+... |.||+
T Consensus 32 ~~iDLg~W~~e~----Y~Ip~ 48 (57)
T PRK01343 32 RDIDLNRWLSGS----YVIPG 48 (57)
T ss_pred hhhhHHHHhCCC----cccCC
Confidence 578999999764 56654
No 10
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=11.41 E-value=2e+02 Score=24.31 Aligned_cols=40 Identities=10% Similarity=0.272 Sum_probs=27.6
Q ss_pred ccccCCCCcchhhccccceeeccccccccchhhHHHhhhh
Q psy16516 73 SMKSHGIPGFLLFTLGFSYVALNTNVFSSVSAIAIFDNIN 112 (179)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~ff~~in 112 (179)
+.-..+|.+||+.+++++.+-.-.-+|-.++..+|..-|.
T Consensus 173 tsGe~RLS~FllWq~~y~El~f~~~~WPdf~~~d~~~al~ 212 (223)
T PF01255_consen 173 TSGEQRLSNFLLWQSAYAELYFTDTLWPDFSFWDFLRALL 212 (223)
T ss_dssp ETT--C-TTSSTTTTTT-EEEEESSSGGG--HHHHHHHHH
T ss_pred eCCCcccCCCeEEeecCcEEEECCCCCccCCHHHHHHHHH
Confidence 3446799999999999999888788888888888877554
Done!