Query psy16516
Match_columns 179
No_of_seqs 124 out of 347
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 23:19:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16516.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16516hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pi1_A MOB1A; mitotic EXIT net 100.0 1.1E-42 3.7E-47 285.6 8.1 104 45-179 2-107 (185)
2 2hjn_A MPS1 binder 1, maintena 100.0 2E-42 6.8E-47 294.0 8.9 118 31-179 40-159 (236)
3 2kwv_A RAD30 homolog B, DNA po 13.6 61 0.0021 21.5 0.9 21 50-70 3-23 (48)
4 3sgv_B Undecaprenyl pyrophosph 12.1 1E+02 0.0035 26.1 2.1 37 75-111 197-233 (253)
5 3ukx_C Bimax2 peptide; arm rep 8.4 2.2E+02 0.0076 16.7 2.0 9 19-27 5-13 (28)
6 4aya_A DNA-binding protein inh 8.4 2.4E+02 0.0081 20.8 2.7 25 151-175 68-92 (97)
7 4h8e_A Undecaprenyl pyrophosph 7.9 2.4E+02 0.0081 23.9 2.8 38 75-112 204-241 (256)
8 3d6l_A Putative hydrolase; hot 7.8 2.2E+02 0.0076 19.4 2.2 18 135-152 109-126 (137)
9 1lv3_A Hypothetical protein YA 7.6 70 0.0024 22.3 -0.5 17 61-81 36-52 (68)
10 3ugs_B Undecaprenyl pyrophosph 7.3 2.7E+02 0.0091 23.1 2.8 38 75-112 177-214 (225)
No 1
>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo sapiens} SCOP: a.29.7.1 PDB: 1r3b_A
Probab=100.00 E-value=1.1e-42 Score=285.59 Aligned_cols=104 Identities=43% Similarity=0.855 Sum_probs=99.9
Q ss_pred hhhCCCCchhhhhcCCCCCCccchhhhcccccCCCCcchhhccccceeeccccccccchhhHHHhhhhhhhhhccCccCC
Q psy16516 45 ERKLPDIDLRLLVEMPQGVDFNEWLASHSMKSHGIPGFLLFTLGFSYVALNTNVFSSVSAIAIFDNINLIYGTISEFCTM 124 (179)
Q Consensus 45 ~~~l~~gnl~~lV~~P~gvD~nEWLA~h~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~ff~~in~~ygtise~CT~ 124 (179)
+++|++||++++|++|+|+|+|||||+|+ ++||++||+|||+++|+||+
T Consensus 2 ~~~l~~g~l~~~v~lP~g~d~~eWla~~~-------------------------------~df~~~in~ly~~i~e~Ct~ 50 (185)
T 1pi1_A 2 EATLGSGNLRQAVMLPEGEDLNEWIAVNT-------------------------------VDFFNQINMLYGTITEFCTE 50 (185)
T ss_dssp CCCTTCCCHHHHTSCCTTCCHHHHHHHHH-------------------------------HHHHHHHHHHHHHTGGGSCT
T ss_pred ccchhcCcHHHHhcCcCCCchhhhHHHHH-------------------------------HHHHHHHHHHHHHHhcccCc
Confidence 46799999999999999999999999999 99999999999999999999
Q ss_pred CCCCCCCCCCCceEEEecCC--CCccccChHHHHHHHHHHHHHhhCCCCCCCCCCCC
Q psy16516 125 SECPDMSGPSFRTYLWVDEK--GKKSRIAAPQYVDYVMTYIQKTIGDESNFPTKYGK 179 (179)
Q Consensus 125 ~tCP~Msa~~~~~YlW~D~~--~kp~~l~ApqYId~vm~wi~~~I~De~iFPTk~g~ 179 (179)
+|||+|+||+.++|+|+|++ ++|++|||||||+++|+||+++|+||++|||+.|.
T Consensus 51 ~tCP~MsAg~~~~Ylw~d~~~~kkp~~~~A~~Yi~~~m~wi~~~l~d~~iFPs~~~~ 107 (185)
T 1pi1_A 51 ASCPVMSAGPRYEYHWADGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGV 107 (185)
T ss_dssp TTCSSEESSTTCEECBCCSSSCCSCBCCCHHHHHHHHHHHHHHHHTCTTTSCSSTTS
T ss_pred ccCccccCCCCeEEEEecCCCCCCCcccCHHHHHHHHHHHHHHHcCCCccCCCCCCC
Confidence 99999999988999999986 59999999999999999999999999999999873
No 2
>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-42 Score=293.97 Aligned_cols=118 Identities=34% Similarity=0.628 Sum_probs=103.6
Q ss_pred CCCCCcchhhhHHhhhhCCCC-chhhhhcCCCCCCccchhhhcccccCCCCcchhhccccceeeccccccccchhhHHHh
Q psy16516 31 CSDDPKLYLEETVLERKLPDI-DLRLLVEMPQGVDFNEWLASHSMKSHGIPGFLLFTLGFSYVALNTNVFSSVSAIAIFD 109 (179)
Q Consensus 31 ~~~~~~~yl~~~~~~~~l~~g-nl~~lV~~P~gvD~nEWLA~h~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~ff~ 109 (179)
...+.+.|..+++++++|++| ||+++|++|+|+|+|||||+|+ ++||+
T Consensus 40 ~~~g~~~~~l~~~~~~~l~~g~~l~~~V~lP~g~D~neWlA~h~-------------------------------~dFfn 88 (236)
T 2hjn_A 40 GTTVTTHQDIKQIVEMTLGSEGVLNQAVKLPRGEDENEWLAVHC-------------------------------VDFYN 88 (236)
T ss_dssp --------CHHHHHHHHHHGGGC---CCSCCTTCCHHHHHHHHH-------------------------------HHHHH
T ss_pred CCCCccHHHHHHHHHHHhcCCcCHHHHhcCcCCCchhhHHHHHH-------------------------------HHHHH
Confidence 345567899999999999999 9999999999999999999999 99999
Q ss_pred hhhhhhhhccCccCCCCCCCCCCCCCceEEEecCC-CCccccChHHHHHHHHHHHHHhhCCCCCCCCCCCC
Q psy16516 110 NINLIYGTISEFCTMSECPDMSGPSFRTYLWVDEK-GKKSRIAAPQYVDYVMTYIQKTIGDESNFPTKYGK 179 (179)
Q Consensus 110 ~in~~ygtise~CT~~tCP~Msa~~~~~YlW~D~~-~kp~~l~ApqYId~vm~wi~~~I~De~iFPTk~g~ 179 (179)
+||+|||+++|+||+++||+|+||..++|+|+|++ ++|++|||||||+++|+||+++|+||++|||+.|.
T Consensus 89 ~in~lyg~ise~CT~~tCP~MsAg~~~~YlW~d~~~kkp~~~~A~~Yi~~lm~wi~~~l~de~iFPs~~~~ 159 (236)
T 2hjn_A 89 QINMLYGSITEFCSPQTCPRMIATNEYEYLWAFQKGQPPVSVSAPKYVECLMRWCQDQFDDESLFPSKVTG 159 (236)
T ss_dssp HHHHHHHHHGGGCCTTTCSSCBSSTTEEECBCSSTTSCCBCCCHHHHHHHHHHHHHHHHTCTTTSCSSTTC
T ss_pred HHHHHHHHHHcccCcccCCCCcCCCCeeEEeccCCCCCCeeeCHHHHHHHHHHHHHHhccCCccCCCCCCC
Confidence 99999999999999999999999988999999986 58999999999999999999999999999999873
No 3
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=13.56 E-value=61 Score=21.51 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=13.4
Q ss_pred CCchhhhhcCCCCCCccchhh
Q psy16516 50 DIDLRLLVEMPQGVDFNEWLA 70 (179)
Q Consensus 50 ~gnl~~lV~~P~gvD~nEWLA 70 (179)
+.|...+..+|+|||..-+=+
T Consensus 3 ~~~~~p~~~lP~~VD~eVF~~ 23 (48)
T 2kwv_A 3 DTSDLPLQALPEGVDQEVFKQ 23 (48)
T ss_dssp ----CCTTSSCTTCCGGGTTT
T ss_pred ccccCccccCCCCCCHHHHHH
Confidence 356677889999999875533
No 4
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=12.06 E-value=1e+02 Score=26.13 Aligned_cols=37 Identities=14% Similarity=0.349 Sum_probs=27.2
Q ss_pred ccCCCCcchhhccccceeeccccccccchhhHHHhhh
Q psy16516 75 KSHGIPGFLLFTLGFSYVALNTNVFSSVSAIAIFDNI 111 (179)
Q Consensus 75 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~ff~~i 111 (179)
-..+|.+|||.+++++-+---.-+|--.+..+|..-|
T Consensus 197 GE~RLSnFLLWQ~aYsElyFtd~lWPdF~~~dl~~Ai 233 (253)
T 3sgv_B 197 GEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGAL 233 (253)
T ss_dssp SCCCCTTSCSGGGTTCEEEECCSCGGGCCHHHHHHHH
T ss_pred CCCcccCchHHHHcCEEEEECCCCCccCCHHHHHHHH
Confidence 4678999999999998777777788555555554433
No 5
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=8.42 E-value=2.2e+02 Score=16.68 Aligned_cols=9 Identities=44% Similarity=0.951 Sum_probs=3.4
Q ss_pred ccccCCCCC
Q psy16516 19 RKARRRDKE 27 (179)
Q Consensus 19 ~~~~~~~k~ 27 (179)
|++|+++++
T Consensus 5 rrrrkrkre 13 (28)
T 3ukx_C 5 RRRRKRKRE 13 (28)
T ss_dssp -CCCCCCCC
T ss_pred HHHHHhhcc
Confidence 334444444
No 6
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=8.41 E-value=2.4e+02 Score=20.79 Aligned_cols=25 Identities=4% Similarity=0.003 Sum_probs=18.5
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCCCC
Q psy16516 151 AAPQYVDYVMTYIQKTIGDESNFPT 175 (179)
Q Consensus 151 ~ApqYId~vm~wi~~~I~De~iFPT 175 (179)
-|..||.++..-++..=.+...|.+
T Consensus 68 lAi~YI~~Lq~~L~~~~~~~~~~~~ 92 (97)
T 4aya_A 68 HVIDYILDLQIALDSHLKPSFLVQS 92 (97)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCC---
T ss_pred HHHHHHHHHHHHHhcCCCCcchhhc
Confidence 5899999999988887777777754
No 7
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=7.90 E-value=2.4e+02 Score=23.88 Aligned_cols=38 Identities=16% Similarity=0.392 Sum_probs=29.4
Q ss_pred ccCCCCcchhhccccceeeccccccccchhhHHHhhhh
Q psy16516 75 KSHGIPGFLLFTLGFSYVALNTNVFSSVSAIAIFDNIN 112 (179)
Q Consensus 75 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~ff~~in 112 (179)
-..+|.+|||.++++|-+---.-+|--.+..+|..-|.
T Consensus 204 GE~RLSnFLLWQ~aYsElyF~d~lWPdF~~~dl~~Ai~ 241 (256)
T 4h8e_A 204 GEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIK 241 (256)
T ss_dssp SCCCCTTSSTTTTTTCEEEECCSCGGGCCHHHHHHHHH
T ss_pred CCCcccCchHHHHcCeEEEECCCCCccCCHHHHHHHHH
Confidence 35789999999999987777778887666666666543
No 8
>3d6l_A Putative hydrolase; hot DOG fold, thioesterase, acyl-COA; 2.59A {Campylobacter jejuni}
Probab=7.75 E-value=2.2e+02 Score=19.38 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=14.6
Q ss_pred CceEEEecCCCCccccCh
Q psy16516 135 FRTYLWVDEKGKKSRIAA 152 (179)
Q Consensus 135 ~~~YlW~D~~~kp~~l~A 152 (179)
..+|.++|+.++|.++|.
T Consensus 109 ~~t~v~~d~~~kp~~iP~ 126 (137)
T 3d6l_A 109 LVTYVSVTRDGKKNPISE 126 (137)
T ss_dssp EEEEEEECTTSCBCCCCH
T ss_pred EEEEEEECCCCCCccCCc
Confidence 457888898889998885
No 9
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=7.59 E-value=70 Score=22.33 Aligned_cols=17 Identities=41% Similarity=0.778 Sum_probs=11.9
Q ss_pred CCCCccchhhhcccccCCCCc
Q psy16516 61 QGVDFNEWLASHSMKSHGIPG 81 (179)
Q Consensus 61 ~gvD~nEWLA~h~~~~~~~~~ 81 (179)
+.+|+++|+... |.||+
T Consensus 36 r~iDLg~Wa~e~----y~Ip~ 52 (68)
T 1lv3_A 36 QLIDLGEWAAEE----KRIPS 52 (68)
T ss_dssp HHHHHSCSSSSS----CCCCS
T ss_pred HhhhHHHHhcCC----ccccC
Confidence 357999998764 56654
No 10
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=7.31 E-value=2.7e+02 Score=23.14 Aligned_cols=38 Identities=16% Similarity=0.366 Sum_probs=29.8
Q ss_pred ccCCCCcchhhccccceeeccccccccchhhHHHhhhh
Q psy16516 75 KSHGIPGFLLFTLGFSYVALNTNVFSSVSAIAIFDNIN 112 (179)
Q Consensus 75 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~ff~~in 112 (179)
-..+|.+|||.+++++-+---.-+|--.+..+|..-|.
T Consensus 177 GE~RLSnFLLWQ~aYsElyF~d~lWPdF~~~~l~~Ai~ 214 (225)
T 3ugs_B 177 NAKRLSNFLLWQCSYAEIYFSETLFPSLTKREFKRIIK 214 (225)
T ss_dssp SCCSCTTSSTTTTTTCEEEEECSCSTTCCHHHHHHHHH
T ss_pred CcccccCcchhhhhceEEEECCCCCccCCHHHHHHHHH
Confidence 46799999999999987777777887777777766553
Done!