RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy16516
         (179 letters)



>gnl|CDD|202711 pfam03637, Mob1_phocein, Mob1/phocein family.  Mob1 is an essential
           Saccharomyces cerevisiae protein, identified from a
           two-hybrid screen, that binds Mps1p, a protein kinase
           essential for spindle pole body duplication and mitotic
           checkpoint regulation. Mob1 contains no known structural
           motifs; however MOB1 is a member of a conserved gene
           family and shares sequence similarity with a
           nonessential yeast gene, MOB2. Mob1 is a phosphoprotein
           in vivo and a substrate for the Mps1p kinase in vitro.
           Conditional alleles of MOB1 cause a late nuclear
           division arrest at restrictive temperature. This family
           also includes phocein, a rat protein that by yeast two
           hybrid interacts with striatin.
          Length = 171

 Score =  128 bits (324), Expect = 3e-38
 Identities = 53/134 (39%), Positives = 71/134 (52%), Gaps = 31/134 (23%)

Query: 45  ERKLPDIDLRLLVEMPQGVDFNEWLASHSMKSHGIPGFLLFTLGFSYVALNTNVFSSVSA 104
           E  L   DL+ +V++P+G D NEW+A H              + F               
Sbjct: 1   EATLGSGDLKTIVKLPEGEDLNEWIAVH-------------VVDF--------------- 32

Query: 105 IAIFDNINLIYGTISEFCTMSECPDMSGPSFRTYLWVDEKGKKSRIAAPQYVDYVMTYIQ 164
              F+ INL+YGTISEFCT   CP MS      YLW DEKGK +R+ APQY+D+++ +I+
Sbjct: 33  ---FNEINLLYGTISEFCTPQTCPQMSAGPQYEYLWADEKGKPTRLPAPQYIDHLLDWIE 89

Query: 165 KTIGDESNFPTKYG 178
             + DE  FPTK G
Sbjct: 90  TQLNDEKIFPTKVG 103


>gnl|CDD|226633 COG4158, COG4158, Predicted ABC-type sugar transport system,
           permease component [General function prediction only].
          Length = 329

 Score = 28.2 bits (63), Expect = 2.1
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 71  SHSMKSHGI-PGFLLFTLGFSYVALNTNVFSSVSAIAIFDNINLIYGTISEFCTMSECPD 129
           S +M++ GI P  +L    FS++A N    S++  I    +IN++      F  ++   D
Sbjct: 20  SDAMQAVGILPILILIVAVFSFIAPNFLTESNLLNITRQASINIVLAAGMTFVILTGGID 79

Query: 130 MS 131
           +S
Sbjct: 80  LS 81


>gnl|CDD|183673 PRK12676, PRK12676, bifunctional inositol-1
           monophosphatase/fructose-1,6-bisphosphatase; Reviewed.
          Length = 263

 Score = 26.8 bits (60), Expect = 5.7
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 90  SYVALNTNVFSSVSAIAIFDNINLIYGTISEFCT 123
           +Y A+N   F ++S IA+F     +YG +    T
Sbjct: 92  TYNAINGIPFYAIS-IAVFKGGKPVYGYVYNLAT 124


>gnl|CDD|222598 pfam14215, bHLH-MYC_N, bHLH-MYC and R2R3-MYB transcription factors
           N-terminal.  This is the N-terminal region of a family
           of MYB and MYC transcription factors. The DNA-binding
           HLH domain is further downstream, pfam00010. Members of
           the MYB and MYC family regulate the biosynthesis of
           phenylpropanoids in several plant species
           (DOI:10.1007/s11295-009-0232-y).
          Length = 171

 Score = 26.1 bits (58), Expect = 7.8
 Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 7/30 (23%)

Query: 58  EMPQGVDFNEWLASHSMKSH------GIPG 81
             P+ +   EW    SM +       G+PG
Sbjct: 75  LSPEDLTDTEWFYLVSM-TFSFPPGEGLPG 103


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0757    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,162,452
Number of extensions: 834074
Number of successful extensions: 666
Number of sequences better than 10.0: 1
Number of HSP's gapped: 665
Number of HSP's successfully gapped: 10
Length of query: 179
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 88
Effective length of database: 6,901,388
Effective search space: 607322144
Effective search space used: 607322144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)