RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16516
         (179 letters)



>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell
           cycle; 2.00A {Saccharomyces cerevisiae}
          Length = 236

 Score =  102 bits (256), Expect = 9e-28
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 32/155 (20%)

Query: 26  KETSLCSDDPKLYLEETVLERKLPDIDLRLLVEMPQGVDFNEWLASHSMKSHGIPGFLLF 85
           +  +  +      +++ V      +  L   V++P+G D NEWLA H +           
Sbjct: 36  QPQAGTTVTTHQDIKQIVEMTLGSEGVLNQAVKLPRGEDENEWLAVHCV----------- 84

Query: 86  TLGFSYVALNTNVFSSVSAIAIFDNINLIYGTISEFCTMSECPDMSGPSFRTYLWVDEKG 145
                                 ++ IN++YG+I+EFC+   CP M   +   YLW  +KG
Sbjct: 85  --------------------DFYNQINMLYGSITEFCSPQTCPRMIATNEYEYLWAFQKG 124

Query: 146 KKS-RIAAPQYVDYVMTYIQKTIGDESNFPTKYGK 179
           +    ++AP+YV+ +M + Q    DES FP+K   
Sbjct: 125 QPPVSVSAPKYVECLMRWCQDQFDDESLFPSKVTG 159


>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo
           sapiens} SCOP: a.29.7.1 PDB: 1r3b_A
          Length = 185

 Score =  100 bits (250), Expect = 3e-27
 Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 33/137 (24%)

Query: 44  LERKLPDIDLRLLVEMPQGVDFNEWLASHSMKSHGIPGFLLFTLGFSYVALNTNVFSSVS 103
           +E  L   +LR  V +P+G D NEW+A ++                              
Sbjct: 1   MEATLGSGNLRQAVMLPEGEDLNEWIAVNT------------------------------ 30

Query: 104 AIAIFDNINLIYGTISEFCTMSECPDMSGPSFRTYLWVDEKG--KKSRIAAPQYVDYVMT 161
            +  F+ IN++YGTI+EFCT + CP MS      Y W D     K  + +AP+Y+DY+MT
Sbjct: 31  -VDFFNQINMLYGTITEFCTEASCPVMSAGPRYEYHWADGTNIKKPIKCSAPKYIDYLMT 89

Query: 162 YIQKTIGDESNFPTKYG 178
           ++Q  + DE+ FP+K G
Sbjct: 90  WVQDQLDDETLFPSKIG 106


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 36.6 bits (84), Expect = 0.004
 Identities = 37/206 (17%), Positives = 58/206 (28%), Gaps = 94/206 (45%)

Query: 14  DTALGRKARRRDKETSLC--------SDDPKLYLEETVLERKL-----PDID-------- 52
           ++AL R     +    L         +DD   Y EE  L R L       +         
Sbjct: 142 NSALFRAVG--EGNAQLVAIFGGQGNTDD---YFEE--L-RDLYQTYHVLVGDLIKFSAE 193

Query: 53  -LRLLVEM--------PQGVDFNEWL--------------ASHSMKSHGIPGFLLF---- 85
            L  L+           QG++  EWL                 S    G+     +    
Sbjct: 194 TLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA 253

Query: 86  -TLGFSYVALNTNVFSS-------VSAIAIFDNINLIYGTISEFCTMSECPDMSGPSFR- 136
             LGF+   L + +  +       V+A+AI                 ++    S  SF  
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAI---------------AETD----SWESFFV 294

Query: 137 ------TYL-WVDEKGKKSRIAAPQY 155
                 T L ++   G +   A P  
Sbjct: 295 SVRKAITVLFFI---GVRCYEAYPNT 317


>3lot_A Uncharacterized protein; protein of unknown function, structural
          genomics, joint CENT structural genomics, JCSG; HET:
          MSE; 1.89A {Archaeoglobus fulgidus}
          Length = 314

 Score = 28.9 bits (64), Expect = 0.91
 Identities = 5/28 (17%), Positives = 12/28 (42%)

Query: 24 RDKETSLCSDDPKLYLEETVLERKLPDI 51
          RD +    + D +++       +K  D+
Sbjct: 54 RDPKDGRPTTDVEVFRYICREIKKQSDV 81


>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD,
           tRNA (M1G37) methyltransferase, B structure funded by
           NIH; 2.60A {Aquifex aeolicus} SCOP: c.116.1.4
          Length = 257

 Score = 26.7 bits (60), Expect = 4.4
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 16/57 (28%)

Query: 16  ALGRKARRRDKETSLCSDDPKLYLEETVLERKLPDIDLRLLVEMPQGVDFNEWLASH 72
            +    ++R          P L      + + L +++  +L  +  G  F EWL  H
Sbjct: 213 RIENTVKKR----------PDL------IPKDLTELEKDILNSILSGKSFKEWLKEH 253


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0509    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,773,400
Number of extensions: 154875
Number of successful extensions: 231
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 11
Length of query: 179
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 92
Effective length of database: 4,272,666
Effective search space: 393085272
Effective search space used: 393085272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)