RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16516
         (179 letters)



>d1pi1a_ a.29.7.1 (A:) Mob1a {Human (Homo sapiens) [TaxId: 9606]}
          Length = 185

 Score =  113 bits (283), Expect = 1e-32
 Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 33/138 (23%)

Query: 44  LERKLPDIDLRLLVEMPQGVDFNEWLASHSMKSHGIPGFLLFTLGFSYVALNTNVFSSVS 103
           +E  L   +LR  V +P+G D NEW+A +                               
Sbjct: 1   MEATLGSGNLRQAVMLPEGEDLNEWIAVN------------------------------- 29

Query: 104 AIAIFDNINLIYGTISEFCTMSECPDMSGPSFRTYLWVDEKGKK--SRIAAPQYVDYVMT 161
            +  F+ IN++YGTI+EFCT + CP MS      Y W D    K   + +AP+Y+DY+MT
Sbjct: 30  TVDFFNQINMLYGTITEFCTEASCPVMSAGPRYEYHWADGTNIKKPIKCSAPKYIDYLMT 89

Query: 162 YIQKTIGDESNFPTKYGK 179
           ++Q  + DE+ FP+K G 
Sbjct: 90  WVQDQLDDETLFPSKIGV 107


>g1as4.1 e.1.1.1 (A:,B:) Antichymotrypsin, alpha-1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 369

 Score = 26.8 bits (58), Expect = 1.8
 Identities = 12/100 (12%), Positives = 32/100 (32%), Gaps = 11/100 (11%)

Query: 48  LPDIDLRLLVEMPQGVDFNEWLASHSMKSHGIPGFLLFTLGFSYVALNTNVFSSVSAIAI 107
                +  +  M        W  S   +  G      F++   Y         +++ I +
Sbjct: 232 PDQDKMEEVEAMLLPETLKRWRDSLEFREIGELYLPKFSISRDY---------NLNDILL 282

Query: 108 FDNINLIYGTISEFCTMSECPDMSGPSF--RTYLWVDEKG 145
              I   + + ++   ++   +++      +  L V E+G
Sbjct: 283 QLGIEEAFTSKADLSGITGARNLAVSQVVHKAVLDVFEEG 322


>d2bvla1 c.68.1.22 (A:1-542) Toxin B {Clostridium difficile [TaxId:
           1496]}
          Length = 542

 Score = 26.5 bits (58), Expect = 1.9
 Identities = 3/49 (6%), Positives = 14/49 (28%), Gaps = 4/49 (8%)

Query: 133 PSFRTYLWVDEK----GKKSRIAAPQYVDYVMTYIQKTIGDESNFPTKY 177
             +   ++ D          +      ++  +   ++ + D      K+
Sbjct: 123 SDYNVNVFYDSNAFLINTLKKTVVESAINDTLESFRENLNDPRFDYNKF 171


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0469    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 669,466
Number of extensions: 29205
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 4
Length of query: 179
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 99
Effective length of database: 1,309,196
Effective search space: 129610404
Effective search space used: 129610404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.7 bits)