Query psy16518
Match_columns 283
No_of_seqs 303 out of 1313
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 23:22:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16518.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16518hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ks1_B Epidermal growth factor 8.9 1.6E+02 0.0056 19.6 1.8 16 32-47 16-31 (44)
2 1qle_D Cytochrome AA3, ccytoch 8.4 1.8E+02 0.0061 19.3 1.8 15 27-41 14-28 (43)
3 1fqj_C Retinal ROD rhodopsin-s 7.8 1.5E+02 0.0051 19.6 1.2 19 102-121 1-19 (42)
4 2l2t_A Receptor tyrosine-prote 7.6 2E+02 0.0069 19.2 1.8 11 31-41 10-20 (44)
5 1m56_D Cytochrome C oxidase; m 7.0 2.2E+02 0.0075 19.5 1.8 16 27-42 22-37 (51)
6 1kvd_A SMK toxin; halotolerant 5.3 2.6E+02 0.009 19.5 1.4 25 23-47 18-42 (63)
7 2wwb_A Protein transport prote 5.2 2.9E+02 0.01 26.8 2.2 32 127-161 20-51 (476)
8 2ju4_A GMP-PDE gamma, retinal 5.0 2.5E+02 0.0084 21.2 1.2 22 100-122 44-65 (87)
9 3odh_A Okrai endonuclease; alp 4.8 2.8E+02 0.0097 24.0 1.6 19 101-119 175-193 (194)
10 1qd6_C Protein (outer membrane 4.7 1.4E+02 0.0047 26.7 -0.5 8 269-276 216-223 (240)
No 1
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=8.94 E-value=1.6e+02 Score=19.57 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=8.0
Q ss_pred HHHhHHHHHHHHHHhh
Q psy16518 32 GFIGGGFATFSYALCQ 47 (283)
Q Consensus 32 G~igG~i~s~i~~~~~ 47 (283)
|.+||++..++++++.
T Consensus 16 gVVgGv~~~~ii~~~~ 31 (44)
T 2ks1_B 16 GMVGALLLLLVVALGI 31 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHH
Confidence 5555555544444433
No 2
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=8.36 E-value=1.8e+02 Score=19.27 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=10.8
Q ss_pred CCchhHHHhHHHHHH
Q psy16518 27 KKTWEGFIGGGFATF 41 (283)
Q Consensus 27 ~KT~EG~igG~i~s~ 41 (283)
.||++||+.-.--+.
T Consensus 14 E~Ty~gFi~~~k~gt 28 (43)
T 1qle_D 14 QATFAGFIKGATWVS 28 (43)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 489999998754443
No 3
>1fqj_C Retinal ROD rhodopsin-sensitive CGMP 3',5'- cyclic phosphodiesterase gamma-subunit...; RGS9, transducin, effector, pdegamma, G protein; HET: GDP; 2.02A {Bos taurus} SCOP: j.51.1.1
Probab=7.85 E-value=1.5e+02 Score=19.55 Aligned_cols=19 Identities=11% Similarity=0.177 Sum_probs=11.2
Q ss_pred cccccccccCCCCCCcccch
Q psy16518 102 AQIDLSSKINQGTNKVPSLL 121 (283)
Q Consensus 102 gVKD~g~~iP~G~gg~ld~l 121 (283)
|+|-+++.+| |+.|..--+
T Consensus 1 gv~gf~~~ip-GmeglgtD~ 19 (42)
T 1fqj_C 1 GVQGFGDDIP-GMEGLGTDI 19 (42)
T ss_dssp ----CTTCCS-CCTTCCHHH
T ss_pred CCcccccccc-cccccCCCe
Confidence 6888999999 888765433
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=7.61 E-value=2e+02 Score=19.18 Aligned_cols=11 Identities=9% Similarity=0.048 Sum_probs=4.8
Q ss_pred hHHHhHHHHHH
Q psy16518 31 EGFIGGGFATF 41 (283)
Q Consensus 31 EG~igG~i~s~ 41 (283)
.+..+|+++++
T Consensus 10 ~aIA~gVVgGv 20 (44)
T 2l2t_A 10 PLIAAGVIGGL 20 (44)
T ss_dssp HHHHHHHHHHH
T ss_pred ceEEEeehHHH
Confidence 33444444433
No 5
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=7.04 E-value=2.2e+02 Score=19.52 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=11.3
Q ss_pred CCchhHHHhHHHHHHH
Q psy16518 27 KKTWEGFIGGGFATFS 42 (283)
Q Consensus 27 ~KT~EG~igG~i~s~i 42 (283)
.||++||+.-.--+.+
T Consensus 22 e~Ty~gFi~~~k~gt~ 37 (51)
T 1m56_D 22 EKTFAGFVRMVTWAAV 37 (51)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3899999987644433
No 6
>1kvd_A SMK toxin; halotolerant yeast; 1.80A {Pichia farinosa} SCOP: d.70.1.2 PDB: 1kve_A
Probab=5.27 E-value=2.6e+02 Score=19.48 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=20.0
Q ss_pred ccCCCCchhHHHhHHHHHHHHHHhh
Q psy16518 23 KLSPKKTWEGFIGGGFATFSYALCQ 47 (283)
Q Consensus 23 ~iSP~KT~EG~igG~i~s~i~~~~~ 47 (283)
--|-.-|.-|..||+++.+..+++.
T Consensus 18 gcsgaatfgglaggivgciaagila 42 (63)
T 1kvd_A 18 GCSGAATFGGLAGGIVGCIAAGILA 42 (63)
T ss_dssp CCSSCCCCTTCCSHHHHHHHHHHHH
T ss_pred CCccchhcccccchHHHHHHHHHHH
Confidence 4677889999999999888776543
No 7
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=5.18 E-value=2.9e+02 Score=26.80 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=24.5
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHhcCcceEe
Q psy16518 127 GFSERWKNWIIRGIFTWIMIGFFVLIVYGGPLALM 161 (283)
Q Consensus 127 glp~r~~nf~vRti~T~vmi~~F~~ii~~Gh~~~~ 161 (283)
+.|+|...+.-|-.||..++.-|. .+.|+++-
T Consensus 20 ~~P~~~~~lr~kil~Tl~~L~iyr---igs~IPlp 51 (476)
T 2wwb_A 20 QKPERKIQFKEKVLWTAITLFIFL---VCCQIPLF 51 (476)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHH---HHHHSCCC
T ss_pred CCCCcCccHHHHHHHHHHHHHHHH---HHccCCCC
Confidence 366788899999999999999888 44444443
No 8
>2ju4_A GMP-PDE gamma, retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit gamma...; intrinsic disordered protein; HET: RCY; NMR {Bos taurus}
Probab=4.98 E-value=2.5e+02 Score=21.21 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=17.3
Q ss_pred cccccccccccCCCCCCcccchh
Q psy16518 100 DKAQIDLSSKINQGTNKVPSLLN 122 (283)
Q Consensus 100 r~gVKD~g~~iP~G~gg~ld~ld 122 (283)
..|||-+++.|| |..|+-.-+.
T Consensus 44 KkGvkGfgddip-gmeglgtdit 65 (87)
T 2ju4_A 44 KKGVQGCGDDIP-GMEGCGTDIT 65 (87)
T ss_dssp CSSSSCCCCSSC-SSSSCSHHHH
T ss_pred CCCccccccccc-ccccccCCee
Confidence 379999999999 8888654443
No 9
>3odh_A Okrai endonuclease; alpha and beta proteins (A/B), restriction endonuclease-like phosphodiesterase; HET: DNA; 2.30A {Oceanobacter kriegii}
Probab=4.81 E-value=2.8e+02 Score=23.98 Aligned_cols=19 Identities=21% Similarity=0.087 Sum_probs=15.7
Q ss_pred ccccccccccCCCCCCccc
Q psy16518 101 KAQIDLSSKINQGTNKVPS 119 (283)
Q Consensus 101 ~gVKD~g~~iP~G~gg~ld 119 (283)
.++.++.+.||.|+||..-
T Consensus 175 d~~~~~~p~i~KGtDGra~ 193 (194)
T 3odh_A 175 DSVDAQVSLIPKGTDGRAI 193 (194)
T ss_dssp SEECTTSCCCCCCCCTTSC
T ss_pred cccccCCCcccCCCCcccc
Confidence 4677788999999999764
No 10
>1qd6_C Protein (outer membrane phospholipase (ompla)); anti-parallel beta barrel dimer, membrane protein; HET: HDS; 2.10A {Escherichia coli} SCOP: f.4.2.1
Probab=4.68 E-value=1.4e+02 Score=26.71 Aligned_cols=8 Identities=88% Similarity=1.655 Sum_probs=5.4
Q ss_pred ehhhHHHH
Q psy16518 269 YGESLVDY 276 (283)
Q Consensus 269 ~~~~~~~~ 276 (283)
|||||-||
T Consensus 216 YGESLiDY 223 (240)
T 1qd6_C 216 YGESLIDY 223 (240)
T ss_dssp ECSSGGGT
T ss_pred cCcchhhh
Confidence 67777665
Done!