Query psy16518
Match_columns 283
No_of_seqs 303 out of 1313
Neff 5.0
Searched_HMMs 13730
Date Fri Aug 16 23:22:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16518.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16518hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bk8a_ g.3.7.5 (A:) Antimicro 17.1 9.1 0.00067 24.9 -0.8 11 26-36 6-16 (50)
2 d1ayja_ g.3.7.5 (A:) Antifunga 11.9 13 0.00096 24.2 -1.2 11 26-36 7-17 (51)
3 d1wtea_ c.52.1.29 (A:) Restric 5.3 61 0.0045 26.1 -0.2 18 176-193 132-150 (272)
4 d2j5ya1 a.8.1.2 (A:1-53) PAB { 5.0 58 0.0042 21.0 -0.4 11 23-33 31-41 (53)
5 d1xmeb2 f.17.2.1 (B:3-36) Bact 4.7 2.5E+02 0.018 16.0 2.3 14 140-153 18-31 (34)
6 d1gjsa_ a.8.1.2 (A:) IgG bindi 4.6 90 0.0065 20.9 0.3 12 23-34 43-54 (65)
7 g1qd6.1 f.4.2.1 (A:,C:) Outer 4.0 78 0.0057 26.5 -0.5 8 269-276 229-236 (253)
8 d1yt3a1 a.60.8.3 (A:194-294) R 3.8 1.3E+02 0.0092 20.5 0.6 29 183-211 20-48 (101)
9 d1zxoa2 c.55.1.5 (A:107-280) H 3.6 3E+02 0.022 20.5 2.8 71 174-251 97-174 (174)
10 d1jjcb1 a.6.1.1 (B:1-38,B:152- 3.5 1.7E+02 0.012 19.5 1.0 25 170-196 46-70 (77)
No 1
>d1bk8a_ g.3.7.5 (A:) Antimicrobial protein 1 (AH-AMP1) {Horse chestnut (Aesculus hippocastanum) [TaxId: 43364]}
Probab=17.10 E-value=9.1 Score=24.87 Aligned_cols=11 Identities=45% Similarity=1.075 Sum_probs=8.6
Q ss_pred CCCchhHHHhH
Q psy16518 26 PKKTWEGFIGG 36 (283)
Q Consensus 26 P~KT~EG~igG 36 (283)
|+|||.|.-|-
T Consensus 6 ~S~TWsG~Cgn 16 (50)
T d1bk8a_ 6 PSQTWSGNCGN 16 (50)
T ss_dssp CCSSSCSCCCC
T ss_pred CCCceeeccCC
Confidence 78899887764
No 2
>d1ayja_ g.3.7.5 (A:) Antifungal protein 1 (RS-AFP1) {Radish (Raphanus sativus) [TaxId: 3726]}
Probab=11.86 E-value=13 Score=24.22 Aligned_cols=11 Identities=45% Similarity=1.093 Sum_probs=8.1
Q ss_pred CCCchhHHHhH
Q psy16518 26 PKKTWEGFIGG 36 (283)
Q Consensus 26 P~KT~EG~igG 36 (283)
|+|||.|.-|-
T Consensus 7 ~S~TWsG~Cgn 17 (51)
T d1ayja_ 7 PSGTWSGVCGN 17 (51)
T ss_dssp ECSSCCSCCSC
T ss_pred cCCceeeccCC
Confidence 77888887654
No 3
>d1wtea_ c.52.1.29 (A:) Restriction endonuclease EcoO109IR {Escherichia coli [TaxId: 562]}
Probab=5.27 E-value=61 Score=26.11 Aligned_cols=18 Identities=56% Similarity=0.680 Sum_probs=14.3
Q ss_pred ccceeeeeh-hhHHHHHhc
Q psy16518 176 AQTTLIVQV-KCFEEIINI 193 (283)
Q Consensus 176 ~~~~~~iq~-~~f~Eii~i 193 (283)
.|-|+++|. +.|+|||+-
T Consensus 132 iqltmavqlnkafheiinn 150 (272)
T d1wtea_ 132 IQLTMAVQLNKAFHEIINN 150 (272)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred EEeehHHHHHHHHHHHHhc
Confidence 355688888 799999984
No 4
>d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId: 1260]}
Probab=5.01 E-value=58 Score=20.96 Aligned_cols=11 Identities=27% Similarity=0.253 Sum_probs=9.6
Q ss_pred ccCCCCchhHH
Q psy16518 23 KLSPKKTWEGF 33 (283)
Q Consensus 23 ~iSP~KT~EG~ 33 (283)
.|+..||+||.
T Consensus 31 ~InkaKTVEgV 41 (53)
T d2j5ya1 31 AINKAKTVEEV 41 (53)
T ss_dssp HHHHCCSHHHH
T ss_pred HHHhhhhHHHH
Confidence 68889999996
No 5
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=4.65 E-value=2.5e+02 Score=15.97 Aligned_cols=14 Identities=21% Similarity=0.548 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHH
Q psy16518 140 IFTWIMIGFFVLIV 153 (283)
Q Consensus 140 i~T~vmi~~F~~ii 153 (283)
-+++.|+..|+.++
T Consensus 18 afslamlfvfiali 31 (34)
T d1xmeb2 18 AFSLAMLFVFIALI 31 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36778888887654
No 6
>d1gjsa_ a.8.1.2 (A:) IgG binding protein G {Streptococcus sp., group G [TaxId: 1306]}
Probab=4.58 E-value=90 Score=20.86 Aligned_cols=12 Identities=33% Similarity=0.324 Sum_probs=9.4
Q ss_pred ccCCCCchhHHH
Q psy16518 23 KLSPKKTWEGFI 34 (283)
Q Consensus 23 ~iSP~KT~EG~i 34 (283)
.|+-.||+||.-
T Consensus 43 lIN~AKTVEGV~ 54 (65)
T d1gjsa_ 43 LINNAKTVEGVK 54 (65)
T ss_dssp HHHTCCSHHHHH
T ss_pred HHhccchHHHHH
Confidence 477889999963
No 7
>g1qd6.1 f.4.2.1 (A:,C:) Outer membrane phospholipase A (OMPLA) {Escherichia coli [TaxId: 562]}
Probab=4.02 E-value=78 Score=26.45 Aligned_cols=8 Identities=88% Similarity=1.655 Sum_probs=6.1
Q ss_pred ehhhHHHH
Q psy16518 269 YGESLVDY 276 (283)
Q Consensus 269 ~~~~~~~~ 276 (283)
|||||-||
T Consensus 229 YGESLiDY 236 (253)
T g1qd6.1 229 YGESLIDY 236 (253)
T ss_dssp ECSSGGGT
T ss_pred cCCchhcc
Confidence 78888776
No 8
>d1yt3a1 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia coli [TaxId: 562]}
Probab=3.79 E-value=1.3e+02 Score=20.52 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=23.5
Q ss_pred ehhhHHHHHhccchhhhhcCCCceeeehh
Q psy16518 183 QVKCFEEIINIGYAVYKIHGLPWFRSLSW 211 (283)
Q Consensus 183 q~~~f~Eii~i~~~~~~~~~LP~~r~L~W 211 (283)
|..+++|+..-....++.+++|-++.++=
T Consensus 20 ~l~~l~~L~~WRe~~A~~~d~p~~~Vl~d 48 (101)
T d1yt3a1 20 QLACLQLLADWRLRKARERDLAVNFVVRE 48 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGTSCH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcceeECH
Confidence 56788999999999999999998766553
No 9
>d1zxoa2 c.55.1.5 (A:107-280) Hypothetical protein BT3618 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=3.61 E-value=3e+02 Score=20.48 Aligned_cols=71 Identities=15% Similarity=0.061 Sum_probs=38.3
Q ss_pred ccccceeeeeh--hhHHHHHhccchhhhhcCCCceeeehhhhhhHHHHHhhhhhhHHHHHHH-hh----hhhhhHHHHhc
Q psy16518 174 SRAQTTLIVQV--KCFEEIINIGYAVYKIHGLPWFRSLSWYFLICSNYFFYGESLVDYFGVL-IN----RTRQNNFDRAG 246 (283)
Q Consensus 174 ~~~~~~~~iq~--~~f~Eii~i~~~~~~~~~LP~~r~L~WYfl~~~~y~~yg~~~~~~~~~~-~~----~~~~~~~~~~~ 246 (283)
+.++...+.++ ..++|+++.....+..++.|..- - -.+-+.+-+.+.+..+.. +. ..+...-+++|
T Consensus 97 ~~~~d~~a~~ii~~~~~~l~~~~~~~~~~~~~~v~~------v-Gsva~~~~~~l~~~l~~~~l~i~~i~~~Pi~glv~y 169 (174)
T d1zxoa2 97 QHLEEPAIRQLVMNSFIAFFRRNVMQYDYKQYPVHF------I-GSIAYCYKEILQDAARQTGIQIGKILQSPMEGLIQY 169 (174)
T ss_dssp TTTTSTTTTHHHHHHHHHHHTTTGGGSCTTTSCEEE------C-SHHHHHTHHHHHHHTTTTTCCEEEECSCTHHHHHTT
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCceEEE------E-ccHHHHHHHHHHHHHHHcCCeecCccCChhHHHHHH
Confidence 33444444444 57888888766666666666432 1 223334445555554331 00 12345679999
Q ss_pred cchhh
Q psy16518 247 NRNRD 251 (283)
Q Consensus 247 h~~is 251 (283)
|+..|
T Consensus 170 h~~l~ 174 (174)
T d1zxoa2 170 HSQLS 174 (174)
T ss_dssp SSSCC
T ss_pred HHhcC
Confidence 98653
No 10
>d1jjcb1 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=3.51 E-value=1.7e+02 Score=19.51 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=18.0
Q ss_pred ccccccccceeeeehhhHHHHHhccch
Q psy16518 170 KVWDSRAQTTLIVQVKCFEEIINIGYA 196 (283)
Q Consensus 170 ~~~~~~~~~~~~iq~~~f~Eii~i~~~ 196 (283)
.+.|.|+|| ..-...-||+-+++..
T Consensus 46 eitPNR~Dc--ls~~Giarel~~~~~~ 70 (77)
T d1jjcb1 46 EVTPNRPDA--LGLLGLARDLHALGYA 70 (77)
T ss_dssp CCCTTCSGG--GSHHHHHHHHHHHTCC
T ss_pred eecCCcHHH--hccccHHHHHHHhccc
Confidence 578999998 4445667888777553
Done!