RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16518
(283 letters)
>gnl|CDD|215322 PLN02594, PLN02594, phosphatidate cytidylyltransferase.
Length = 342
Score = 104 bits (262), Expect = 4e-26
Identities = 43/99 (43%), Positives = 59/99 (59%), Gaps = 9/99 (9%)
Query: 1 MIICNDVWAYVFGFFFGRTPLIKLSPKKTWEGFIGGGFAT------FSYALCQHKYFVCP 54
+I+ ND+ AY+FGFFFGRTPLIKLSPKKTWEGFIG T + + + ++ CP
Sbjct: 133 LIVINDIAAYLFGFFFGRTPLIKLSPKKTWEGFIGASVTTLISAFYLANIMGKFQWLTCP 192
Query: 55 IEFSEKLGRMSIDCEPSQLFRPHEYSLPSFPGSFLSVKE 93
+ L ++C+P LF+P Y LP + + KE
Sbjct: 193 ---RKDLSTGWLECDPDPLFKPETYPLPGWIPRWFPWKE 228
Score = 33.5 bits (77), Expect = 0.096
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 187 FEEIINIGYAVYKIHGLPWFRSLSWYFLICSNYFFYGESL 226
E+ N+ + LP FR L+W+F + +F YG L
Sbjct: 4 ARELFNLARKAREERQLPGFRLLNWHFFFTAMFFVYGRFL 43
>gnl|CDD|216329 pfam01148, CTP_transf_1, Cytidylyltransferase family. The members
of this family are integral membrane protein
cytidylyltransferases. The family includes phosphatidate
cytidylyltransferase EC:2.7.7.41 as well as Sec59 from
yeast. Sec59 is a dolichol kinase EC:2.7.1.108.
Length = 259
Score = 58.5 bits (142), Expect = 4e-10
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 1 MIICNDVWAYVFGFFFGRT-PLIKLSPKKTWEGFIGGGFATFSYAL 45
++ +D+ AY G FG+ K+SP KTWEGF+GG A L
Sbjct: 138 VVWASDIGAYFVGKAFGKHKLAPKISPNKTWEGFLGGFVAAVLVGL 183
Score = 56.6 bits (137), Expect = 2e-09
Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 15/99 (15%)
Query: 136 IIRGIFTWIMIGFFVLIVYGGPLALMVTVSVKTAKVWDSRAQTTLIVQVKCFEEIINIGY 195
R I ++I F+++++ GPL ++ V + + E+I +
Sbjct: 1 KQRIITHIVLILIFLILLFLGPLIFLLLV---------------AAIIILALYELIRLLR 45
Query: 196 AVYKIHGLPWFRSLSWYFLICSNYFFYGESLVDYFGVLI 234
+ L R L F + YGE L+ FG+++
Sbjct: 46 LKFSSRLLLLTRGLGLIFYLLGLLLVYGEGLLALFGLVL 84
>gnl|CDD|223648 COG0575, CdsA, CDP-diglyceride synthetase [Lipid metabolism].
Length = 265
Score = 47.3 bits (113), Expect = 3e-06
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 1 MIICNDVWAYVFGFFFGRTPLI-KLSPKKTWEGFIGGGFATFSYAL 45
+ D+ AY G FG+ L K+SPKKTWEGFIGG A+
Sbjct: 142 GVWAGDIGAYFVGRRFGKHKLAPKISPKKTWEGFIGGALGAVLVAV 187
>gnl|CDD|178539 PLN02953, PLN02953, phosphatidate cytidylyltransferase.
Length = 403
Score = 47.0 bits (111), Expect = 6e-06
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 2 IICNDVWAYVFGFFFGRTPLIKLSPKKTWEGFIGGGFATFSYALCQHKYFVCP 54
+I D +A++ G FGRTPL +SPKKTWEG G + + K P
Sbjct: 278 VIATDTFAFLGGKAFGRTPLTSISPKKTWEGTFVGLVGCIAITILLSKSLSWP 330
>gnl|CDD|183240 PRK11624, cdsA, CDP-diglyceride synthase; Provisional.
Length = 285
Score = 43.1 bits (102), Expect = 7e-05
Identities = 21/36 (58%), Positives = 24/36 (66%), Gaps = 6/36 (16%)
Query: 7 VW-----AYVFGFFFGRTPLI-KLSPKKTWEGFIGG 36
VW AY+FG FG+ L K+SP KTWEGFIGG
Sbjct: 161 VWGADSGAYMFGKLFGKHKLAPKVSPGKTWEGFIGG 196
>gnl|CDD|226955 COG4589, COG4589, Predicted CDP-diglyceride
synthetase/phosphatidate cytidylyltransferase [General
function prediction only].
Length = 303
Score = 42.4 bits (100), Expect = 1e-04
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 5 NDVWAYVFGFFFGRTPLI-KLSPKKTWEGFIGGGFAT 40
NDV YV+G FG+ ++ K+SP KT EG IGG T
Sbjct: 186 NDVAQYVWGKSFGKRKIVPKVSPNKTVEGLIGGILTT 222
>gnl|CDD|173171 PRK14708, PRK14708, flagellin; Provisional.
Length = 888
Score = 30.6 bits (69), Expect = 1.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 153 VYGGPLALMVTVSVKTAKVWDSRAQTTLIVQVKCFEEIIN 192
V GG + +T + A V D AQ T VK F ++++
Sbjct: 696 VLGGTITSTLTFTTPNAPVADVNAQNTRAGLVKQFNDVLD 735
>gnl|CDD|221354 pfam11979, DUF3480, Domain of unknown function (DUF3480). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 350 to 362 amino acids in length. This domain is
found associated with pfam01363.
Length = 354
Score = 28.1 bits (63), Expect = 5.3
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 15/78 (19%)
Query: 47 QHKYFVCPIEFSEKLGRMSIDCEPSQL-------FRPHEYSLPSFPGSFLSVKEELDSED 99
+++Y+ CP+ S + GR S+ E FR + Y+LPS G + + E+
Sbjct: 35 EYRYYPCPL-VSVR-GRESVYGEIGHTIMNLLTDFRNYSYTLPSVRGLTIHM------EN 86
Query: 100 DKAQIDLSSKINQGTNKV 117
K I + KV
Sbjct: 87 RKTTIKIPRNRYSEVIKV 104
>gnl|CDD|224826 COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family
[Inorganic ion transport and metabolism].
Length = 416
Score = 28.0 bits (63), Expect = 5.4
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 124 ALQGF----SERWKN-WIIRGIFTWIMIGFFVLIVYGGPLALMVTVSV 166
++GF W+ I R I+ G ++I++G P L+V V
Sbjct: 312 VMEGFLNWRIPLWRRRLITRTFA--IVPGLAIIILFGDPARLLVFSQV 357
>gnl|CDD|219179 pfam06793, UPF0262, Uncharacterized protein family (UPF0262).
Length = 159
Score = 26.8 bits (60), Expect = 9.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 252 FRRSLSWYFLICSNYF 267
FRR + YF+IC +Y+
Sbjct: 86 FRRIIKDYFMICESYY 101
>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, DMPK-related cell division
control protein 42 binding kinase alpha.
Serine/Threonine Kinases (STKs), DMPK-like subfamily,
DMPK-related cell division control protein 42 (Cdc42)
binding kinase (MRCK) alpha isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MRCK is activated via interaction with the
small GTPase Cdc42. MRCK/Cdc42 signaling mediates
myosin-dependent cell motility. MRCKalpha is expressed
ubiquitously in many tissues. It plays a role in the
regulation of peripheral actin reorganization and
neurite outgrowth. It may also play a role in the
transferrin iron uptake pathway.
Length = 332
Score = 27.3 bits (60), Expect = 9.9
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 205 WFRSLSWYFLICSNYFFYGESLVDYFGVLINRTRQNNF-----DRAGNRNRDFRRSLSWY 259
W + Y ++ FY ESLV+ +G ++N + F D + + RR
Sbjct: 192 WSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPAQVTDVSEDAKDLIRR----- 246
Query: 260 FLICSNYFFYGESLVDYF 277
LICS G++ ++ F
Sbjct: 247 -LICSREHRLGQNGIEDF 263
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.144 0.471
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,948,818
Number of extensions: 1421732
Number of successful extensions: 1951
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1940
Number of HSP's successfully gapped: 33
Length of query: 283
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 187
Effective length of database: 6,679,618
Effective search space: 1249088566
Effective search space used: 1249088566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.2 bits)