RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16518
         (283 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 36.4 bits (83), Expect = 0.010
 Identities = 38/301 (12%), Positives = 79/301 (26%), Gaps = 94/301 (31%)

Query: 2   IICNDVWAYVFGFFFGRTPLIKLSPKKTWEGFIGGGFATFSYALCQ-----HKYFVCPIE 56
           ++  +V                    K W  F            C+         V    
Sbjct: 248 LVLLNVQN-----------------AKAWNAFNLS---------CKILLTTRFKQVTDFL 281

Query: 57  FSEKLGRMSIDCEPSQLFRPHEYSLPSFPGSFLSVKEELDSEDDKAQIDLSSKINQGTNK 116
            +     +S+D   S    P E         +L  + +          DL  ++     +
Sbjct: 282 SAATTTHISLD-HHSMTLTPDE-VKSLL-LKYLDCRPQ----------DLPREVLTTNPR 328

Query: 117 VPSLLNRALQGFSERWKNWIIRGIFTWIMIGFFVLIVYGGPLALMVTVSVKTAKVWDSRA 176
             S++  +++     W NW  + +                 L  ++  S+   +  + R 
Sbjct: 329 RLSIIAESIRDGLATWDNW--KHVNCD-------------KLTTIIESSLNVLEPAEYRK 373

Query: 177 Q-TTLIVQVKCFEEIINIGYAVYKIHGLPWFRS-----------LSWYFLICSNYFFYGE 224
               L V    F    +I   +  +  + WF             L  Y L+        E
Sbjct: 374 MFDRLSV----FPPSAHIPTILLSL--I-WFDVIKSDVMVVVNKLHKYSLVEKQPK---E 423

Query: 225 SLVDYFGVLINRTRQNNFDRAGNRN-----RDFRRSLSWYFLI--CSNYFFYGESLVDYF 277
           S +    + +    +   + A +R+        +   S   +      YF+       + 
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS------HI 477

Query: 278 G 278
           G
Sbjct: 478 G 478


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 35.4 bits (81), Expect = 0.025
 Identities = 29/142 (20%), Positives = 46/142 (32%), Gaps = 46/142 (32%)

Query: 24  LSPKKTWEGFIGGGFATFSYALCQHKYFVCPIEFSEKLGRMSIDCEPSQLFRPHEYSLPS 83
           ++   +WE F    F +   A+     F   +   E     S+     +    +   +PS
Sbjct: 283 IAETDSWESF----FVSVRKAI--TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336

Query: 84  FPGSFLSVK----EELDS----------EDDKAQIDLSSKINQGTNKV----P-SL--LN 122
            P   LS+     E++               + +I L   +N   N V    P SL  LN
Sbjct: 337 -P--MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL---VNGAKNLVVSGPPQSLYGLN 390

Query: 123 RALQ-------------GFSER 131
             L+              FSER
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSER 412


>3lo7_A PBPA, penicillin-binding protein A; transpeptidase domain, cell
           membrane, cell shape, cell WALL biogenesis/degradation,
           membrane; 2.05A {Mycobacterium tuberculosis}
          Length = 483

 Score = 28.4 bits (64), Expect = 3.1
 Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 10/49 (20%)

Query: 80  SLPSF-PGSFLSVKEELDSEDDKAQIDLSSKINQGTNKVPSLLNRALQG 127
           S PS+ P    S   E+ ++  +        +         L NRA+  
Sbjct: 169 SSPSYDPNLLASHNPEVQAQAWQR-------LGDNPAS--PLTNRAISE 208


>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
          HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
          3hdy_A* 3he3_A* 3mj4_A*
          Length = 397

 Score = 27.0 bits (59), Expect = 8.4
 Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 2/48 (4%)

Query: 34 IGGGFA--TFSYALCQHKYFVCPIEFSEKLGRMSIDCEPSQLFRPHEY 79
          +G GFA    +  L      V  ++    +G  + DC        H Y
Sbjct: 35 VGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGVLIHPY 82


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.328    0.144    0.471 

Gapped
Lambda     K      H
   0.267   0.0782    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,510,201
Number of extensions: 254867
Number of successful extensions: 623
Number of sequences better than 10.0: 1
Number of HSP's gapped: 618
Number of HSP's successfully gapped: 14
Length of query: 283
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 191
Effective length of database: 4,133,061
Effective search space: 789414651
Effective search space used: 789414651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.6 bits)