RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16518
         (283 letters)



>d1ciya2 b.77.2.1 (A:256-461) delta-Endotoxin (insectocide), middle
           domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
          Length = 206

 Score = 28.5 bits (63), Expect = 0.72
 Identities = 7/60 (11%), Positives = 18/60 (30%)

Query: 190 IINIGYAVYKIHGLPWFRSLSWYFLICSNYFFYGESLVDYFGVLINRTRQNNFDRAGNRN 249
           +   G  +++    P +R +       +   F  +     F  L        + + G  +
Sbjct: 95  VSLTGLGIFRTLSSPLYRRIILGSGPNNQELFVLDGTEFSFASLTTNLPSTIYRQRGTVD 154


>d1vqra_ a.211.1.3 (A:) Hypothetical protein Cj0248 {Campylobacter
           jejuni [TaxId: 197]}
          Length = 286

 Score = 27.9 bits (61), Expect = 1.4
 Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 80  SLPSFPGSFLSVKEELDSEDDKAQI-DLSSKINQG---TNKVPSLLNRALQGFSERWKN 134
            LP  P +   +++ +   +   +   ++  I+     T K+  L N    GF+     
Sbjct: 16  VLPPLPDTVSKLRKYVSEANSNIETMKVAEIISSDPLMTAKLLQLANSPYYGFTREITT 74


>g1qd6.1 f.4.2.1 (A:,C:) Outer membrane phospholipase A (OMPLA)
           {Escherichia coli [TaxId: 562]}
          Length = 253

 Score = 25.9 bits (57), Expect = 5.8
 Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 16/69 (23%)

Query: 218 NYFFYGESLVDYFGVLINRTRQNNFDRAGNRNRDFRR---SLSWYFLICSNYFF------ 268
            Y  Y +  + Y                G  N +       L   + I  +         
Sbjct: 174 KYMGYYQLKIGY------HLGDAVLSAKGQYNWNTGYGGAELGLSYPITKHVRLYTQVYS 227

Query: 269 -YGESLVDY 276
            YGESL+DY
Sbjct: 228 GYGESLIDY 236


>d1pg5a1 c.78.1.1 (A:1-146) Aspartate carbamoyltransferase catalytic
           subunit {Archaeon Sulfolobus acidocaldarius [TaxId:
           2285]}
          Length = 146

 Score = 25.5 bits (55), Expect = 6.1
 Identities = 6/56 (10%), Positives = 17/56 (30%), Gaps = 1/56 (1%)

Query: 88  FLSVKEELDSEDDKAQIDLSSKINQGTNKVPSLLNRALQGFSERWKNWIIRGIFTW 143
            +S       ++ +    L+ K ++  N    +L+      +    +      F  
Sbjct: 4   IISAYN-FSRDELEDIFALTDKYSKNLNDTRKILSGKTISIAFFEPSTRTYLSFQK 58


>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 217

 Score = 25.2 bits (55), Expect = 9.1
 Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 88  FLSVKEELDSEDDKAQ--IDLSSKINQGTNKVPSLLNRALQ 126
           F+ ++  L +E D  +    +   + Q   ++ +LL    Q
Sbjct: 7   FVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQ 47


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.144    0.471 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,155,748
Number of extensions: 53167
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 14
Length of query: 283
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 199
Effective length of database: 1,254,276
Effective search space: 249600924
Effective search space used: 249600924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.0 bits)