Query psy1652
Match_columns 86
No_of_seqs 51 out of 53
Neff 2.3
Searched_HMMs 46136
Date Fri Aug 16 23:23:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00089 HR1 Protein kinase C-r 98.3 3.8E-07 8.2E-12 56.8 2.5 38 1-40 31-68 (72)
2 smart00742 Hr1 Rho effector or 98.0 6.6E-06 1.4E-10 49.8 3.0 34 1-38 23-56 (57)
3 PF02185 HR1: Hr1 repeat; Int 97.6 3.8E-05 8.1E-10 47.5 2.5 37 1-41 23-60 (70)
4 PRK14065 exodeoxyribonuclease 73.8 3.4 7.3E-05 28.5 2.5 23 13-35 59-81 (86)
5 PF02970 TBCA: Tubulin binding 68.6 7 0.00015 25.7 3.0 23 10-32 44-66 (90)
6 PF02609 Exonuc_VII_S: Exonucl 57.3 18 0.0004 21.3 3.1 21 13-33 33-53 (53)
7 PRK00977 exodeoxyribonuclease 53.8 19 0.00042 23.4 3.1 21 13-33 44-64 (80)
8 TIGR01280 xseB exodeoxyribonuc 53.6 20 0.00044 22.6 3.1 22 13-34 35-56 (67)
9 PRK14067 exodeoxyribonuclease 53.3 20 0.00043 23.6 3.1 21 13-33 41-61 (80)
10 PRK14063 exodeoxyribonuclease 53.3 20 0.00043 23.2 3.1 21 13-33 39-59 (76)
11 PRK14066 exodeoxyribonuclease 50.5 24 0.00051 22.9 3.1 21 13-33 38-58 (75)
12 PF04695 Pex14_N: Peroxisomal 46.9 20 0.00043 24.8 2.4 23 14-36 4-33 (136)
13 PRK14064 exodeoxyribonuclease 43.0 36 0.00078 22.0 3.1 21 13-33 40-60 (75)
14 PRK14070 exodeoxyribonuclease 35.6 56 0.0012 21.1 3.1 21 13-33 29-49 (69)
15 PRK14068 exodeoxyribonuclease 35.1 57 0.0012 21.2 3.1 21 13-33 40-60 (76)
16 PF13118 DUF3972: Protein of u 33.9 73 0.0016 23.0 3.7 24 15-38 100-123 (126)
17 PF09957 DUF2191: Uncharacteri 33.8 48 0.001 19.6 2.4 28 12-40 8-35 (47)
18 PRK14069 exodeoxyribonuclease 33.2 60 0.0013 22.3 3.1 21 13-33 42-62 (95)
19 PF14167 YfkD: YfkD-like prote 28.8 23 0.0005 28.2 0.5 33 4-36 12-49 (232)
20 PF07631 PSD4: Protein of unkn 26.5 57 0.0012 22.6 2.1 25 11-35 34-58 (128)
21 PF05184 SapB_1: Saposin-like 26.2 94 0.002 16.3 2.5 21 14-34 9-29 (39)
22 COG3894 Uncharacterized metal- 26.1 20 0.00043 31.9 -0.3 14 73-86 247-260 (614)
23 PHA00425 DNA packaging protein 23.2 50 0.0011 23.0 1.3 12 17-28 16-27 (88)
No 1
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=98.32 E-value=3.8e-07 Score=56.75 Aligned_cols=38 Identities=42% Similarity=0.672 Sum_probs=33.5
Q ss_pred CcccccCCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q psy1652 1 MIQSLTSGGSRDKKLLAEAQQMLADSKAKIEFLRMRILKV 40 (86)
Q Consensus 1 Miq~ys~gssKDRKLLatAQQMLqDSKtKIE~IRMqI~k~ 40 (86)
|+++|++++.+ +.+++|+++|.||..||++||++|-..
T Consensus 31 m~~~~~~~~~~--~~~~~~~~~l~es~~ki~~Lr~~L~k~ 68 (72)
T cd00089 31 LLRLYSDEKKK--KLLAEAEQMLRESKQKLELLKMQLEKL 68 (72)
T ss_pred HHHHHhcCCCc--cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889988544 899999999999999999999999654
No 2
>smart00742 Hr1 Rho effector or protein kinase C-related kinase homology region 1 homologues. Alpha-helical domain found in vertebrate PRK1 and yeast PKC1 protein kinases C. The HR1 in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Also called RBD - Rho-binding domain
Probab=97.99 E-value=6.6e-06 Score=49.83 Aligned_cols=34 Identities=35% Similarity=0.567 Sum_probs=29.2
Q ss_pred CcccccCCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy1652 1 MIQSLTSGGSRDKKLLAEAQQMLADSKAKIEFLRMRIL 38 (86)
Q Consensus 1 Miq~ys~gssKDRKLLatAQQMLqDSKtKIE~IRMqI~ 38 (86)
|+++|+| |+|.+++|+.+|.+|+.||++||+++-
T Consensus 23 m~~~~~~----~~k~~~~a~~~l~es~~ki~~L~~~L~ 56 (57)
T smart00742 23 MRKLTSN----DRKVLSEAQSMLRESNQKLDLLKEELE 56 (57)
T ss_pred HHHHHcC----cHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566665 568999999999999999999999874
No 3
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=97.65 E-value=3.8e-05 Score=47.55 Aligned_cols=37 Identities=46% Similarity=0.634 Sum_probs=30.2
Q ss_pred CcccccCCCchhHHH-HHHHHHHHHhhHHHHHHHHHHHHHhh
Q psy1652 1 MIQSLTSGGSRDKKL-LAEAQQMLADSKAKIEFLRMRILKVK 41 (86)
Q Consensus 1 Miq~ys~gssKDRKL-LatAQQMLqDSKtKIE~IRMqI~k~~ 41 (86)
|+++| +.|++. +++|+.+|.+|..||++||++|-...
T Consensus 23 m~~~~----~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~ 60 (70)
T PF02185_consen 23 MLQAY----STDKKKVLSEAESQLRESNQKIELLREQLEKLQ 60 (70)
T ss_dssp HHHHH----CCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566 355654 99999999999999999999998754
No 4
>PRK14065 exodeoxyribonuclease VII small subunit; Provisional
Probab=73.80 E-value=3.4 Score=28.50 Aligned_cols=23 Identities=26% Similarity=0.223 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Q psy1652 13 KKLLAEAQQMLADSKAKIEFLRM 35 (86)
Q Consensus 13 RKLLatAQQMLqDSKtKIE~IRM 35 (86)
-++|..||.||++.+..++-|.+
T Consensus 59 ~~lL~eAqk~LE~AkLe~~eI~~ 81 (86)
T PRK14065 59 MQELFLAQKLLENAYLEYEKLQT 81 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 48999999999999999988754
No 5
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=68.61 E-value=7 Score=25.69 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=19.9
Q ss_pred chhHHHHHHHHHHHHhhHHHHHH
Q psy1652 10 SRDKKLLAEAQQMLADSKAKIEF 32 (86)
Q Consensus 10 sKDRKLLatAQQMLqDSKtKIE~ 32 (86)
.+.+++|.+++.|+-|++.++.-
T Consensus 44 Kkq~~vl~Et~~mipd~~~RL~~ 66 (90)
T PF02970_consen 44 KKQEEVLEETKMMIPDCQQRLEK 66 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 36789999999999999998764
No 6
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=57.25 E-value=18 Score=21.30 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q psy1652 13 KKLLAEAQQMLADSKAKIEFL 33 (86)
Q Consensus 13 RKLLatAQQMLqDSKtKIE~I 33 (86)
.+|+..+++.|.+.+.||+.|
T Consensus 33 ~~l~~~c~~~L~~~e~~i~~l 53 (53)
T PF02609_consen 33 MELIKKCQERLEEAEQKIEEL 53 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 478888888888888888765
No 7
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=53.78 E-value=19 Score=23.37 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q psy1652 13 KKLLAEAQQMLADSKAKIEFL 33 (86)
Q Consensus 13 RKLLatAQQMLqDSKtKIE~I 33 (86)
-+|+..+++.|++.+.||+.|
T Consensus 44 ~~L~k~C~~~L~~ae~ki~~l 64 (80)
T PRK00977 44 VALARQCQKKLQQAEQRVEKL 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999988876
No 8
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=53.61 E-value=20 Score=22.56 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHH
Q psy1652 13 KKLLAEAQQMLADSKAKIEFLR 34 (86)
Q Consensus 13 RKLLatAQQMLqDSKtKIE~IR 34 (86)
-+|+..++++|++.+.||..|-
T Consensus 35 ~~L~k~c~~~L~~ae~kv~~l~ 56 (67)
T TIGR01280 35 MALARRCEKKLAQAEQRVRKLL 56 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999998764
No 9
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=53.33 E-value=20 Score=23.62 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q psy1652 13 KKLLAEAQQMLADSKAKIEFL 33 (86)
Q Consensus 13 RKLLatAQQMLqDSKtKIE~I 33 (86)
-+|+..+++.|++.+.||+.|
T Consensus 41 ~~L~k~C~~~L~~ae~kI~~l 61 (80)
T PRK14067 41 LGLARACREQLAKARNEIRLF 61 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999877
No 10
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=53.32 E-value=20 Score=23.21 Aligned_cols=21 Identities=10% Similarity=0.214 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q psy1652 13 KKLLAEAQQMLADSKAKIEFL 33 (86)
Q Consensus 13 RKLLatAQQMLqDSKtKIE~I 33 (86)
-+|+..++++|++.+.||..|
T Consensus 39 ~~L~k~C~~~L~~aE~ki~~l 59 (76)
T PRK14063 39 MELSKLCDEKLKNVQEQMAVI 59 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999998754
No 11
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=50.47 E-value=24 Score=22.93 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q psy1652 13 KKLLAEAQQMLADSKAKIEFL 33 (86)
Q Consensus 13 RKLLatAQQMLqDSKtKIE~I 33 (86)
-+|+..+++.|.+.+.||+.|
T Consensus 38 ~~L~k~C~~~L~~ae~kv~~l 58 (75)
T PRK14066 38 VKHAAFCSKKLDEAERRVEVL 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999988765
No 12
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=46.90 E-value=20 Score=24.79 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhH-------HHHHHHHHH
Q psy1652 14 KLLAEAQQMLADSK-------AKIEFLRMR 36 (86)
Q Consensus 14 KLLatAQQMLqDSK-------tKIE~IRMq 36 (86)
+||+.|-.-|+|.+ .||+||+=+
T Consensus 4 ~li~~A~~FL~~p~V~~sp~~~k~~FL~sK 33 (136)
T PF04695_consen 4 DLIEQAVKFLQDPKVRNSPLEKKIAFLESK 33 (136)
T ss_dssp HHHHHHHHHHCTTTCCCS-HHHHHHHHHHC
T ss_pred HHHHHHHHHhCCcccccCCHHHHHHHHHcC
Confidence 79999999999987 799999854
No 13
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=43.04 E-value=36 Score=22.01 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q psy1652 13 KKLLAEAQQMLADSKAKIEFL 33 (86)
Q Consensus 13 RKLLatAQQMLqDSKtKIE~I 33 (86)
-+|+..+++.|++.+.||+.|
T Consensus 40 ~~L~k~c~~~L~~ae~kv~~l 60 (75)
T PRK14064 40 IELTKLCQDKLQSAEKRMAKV 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999998865
No 14
>PRK14070 exodeoxyribonuclease VII small subunit; Provisional
Probab=35.60 E-value=56 Score=21.06 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q psy1652 13 KKLLAEAQQMLADSKAKIEFL 33 (86)
Q Consensus 13 RKLLatAQQMLqDSKtKIE~I 33 (86)
-+|+..++++|.+.+.||+.|
T Consensus 29 ~~L~k~C~~~L~~aE~kI~~l 49 (69)
T PRK14070 29 VELYRKCKEILQQNRLKIIDV 49 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999988754
No 15
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=35.11 E-value=57 Score=21.24 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q psy1652 13 KKLLAEAQQMLADSKAKIEFL 33 (86)
Q Consensus 13 RKLLatAQQMLqDSKtKIE~I 33 (86)
.+|+..+++.|++.+.||..|
T Consensus 40 ~~L~k~C~~~L~~ae~kv~~l 60 (76)
T PRK14068 40 MKLSAACDTTLKNAEKKVNDL 60 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478888999999988888765
No 16
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=33.93 E-value=73 Score=23.02 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Q psy1652 15 LLAEAQQMLADSKAKIEFLRMRIL 38 (86)
Q Consensus 15 LLatAQQMLqDSKtKIE~IRMqI~ 38 (86)
-|.-.|....++|.=|++||+|+-
T Consensus 100 Al~s~QE~y~ed~kTI~~L~~qL~ 123 (126)
T PF13118_consen 100 ALYSMQELYEEDRKTIELLREQLK 123 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 355568888899999999999974
No 17
>PF09957 DUF2191: Uncharacterized protein conserved in bacteria (DUF2191); InterPro: IPR019239 This entry, found in various hypothetical prokaryotic proteins, has no known function.
Probab=33.76 E-value=48 Score=19.61 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q psy1652 12 DKKLLAEAQQMLADSKAKIEFLRMRILKV 40 (86)
Q Consensus 12 DRKLLatAQQMLqDSKtKIE~IRMqI~k~ 40 (86)
|-+||++|+++-. -++|-++++..+-..
T Consensus 8 Dd~Ll~eA~~l~g-~~tk~~~V~~ALr~~ 35 (47)
T PF09957_consen 8 DDELLAEAMRLTG-TKTKKEAVNEALREL 35 (47)
T ss_pred CHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 5689999988766 888989888776543
No 18
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=33.24 E-value=60 Score=22.29 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q psy1652 13 KKLLAEAQQMLADSKAKIEFL 33 (86)
Q Consensus 13 RKLLatAQQMLqDSKtKIE~I 33 (86)
-+|+..+++.|++.+.||+.|
T Consensus 42 v~L~k~C~~~L~~AE~kV~~L 62 (95)
T PRK14069 42 MELKKICSGILDDAEGKIEAL 62 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999998876
No 19
>PF14167 YfkD: YfkD-like protein
Probab=28.82 E-value=23 Score=28.18 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=24.3
Q ss_pred cccCCCchhHHH--HHHHHHHHHhhHHHHH---HHHHH
Q psy1652 4 SLTSGGSRDKKL--LAEAQQMLADSKAKIE---FLRMR 36 (86)
Q Consensus 4 ~ys~gssKDRKL--LatAQQMLqDSKtKIE---~IRMq 36 (86)
+|.|.+-....| -.-|+++|.+|..||| +|||-
T Consensus 12 TYpN~~qd~p~Lqps~~~~eLl~ts~v~IeNP~LIrml 49 (232)
T PF14167_consen 12 TYPNPTQDLPRLQPSELAKELLKTSNVKIENPDLIRML 49 (232)
T ss_pred CCCCccccccccChHHHHHHHHhccCccccChHHhhhh
Confidence 566665444443 3568999999999996 89984
No 20
>PF07631 PSD4: Protein of unknown function (DUF1592); InterPro: IPR013042 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013043 from INTERPRO.
Probab=26.46 E-value=57 Score=22.59 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHH
Q psy1652 11 RDKKLLAEAQQMLADSKAKIEFLRM 35 (86)
Q Consensus 11 KDRKLLatAQQMLqDSKtKIE~IRM 35 (86)
....|-+.|+.||+|.|++--+-+.
T Consensus 34 ~~~~l~~q~~RML~dpr~~~~~~~F 58 (128)
T PF07631_consen 34 TPEQLRAQAERMLADPRARRFVERF 58 (128)
T ss_pred CHHHHHHHHHHHHcCccHHHHHHHH
Confidence 3446778899999999996544443
No 21
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=26.23 E-value=94 Score=16.31 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHH
Q psy1652 14 KLLAEAQQMLADSKAKIEFLR 34 (86)
Q Consensus 14 KLLatAQQMLqDSKtKIE~IR 34 (86)
-++..++.+|++.+++-|++.
T Consensus 9 ~~v~~i~~~l~~~~t~~~I~~ 29 (39)
T PF05184_consen 9 FVVKEIEKLLKNNKTEEEIKK 29 (39)
T ss_dssp HHHHHHHHHHHSTCHHHHHHH
T ss_pred HHHHHHHHHHHcCccHHHHHH
Confidence 467889999999998877764
No 22
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=26.13 E-value=20 Score=31.90 Aligned_cols=14 Identities=50% Similarity=0.698 Sum_probs=10.7
Q ss_pred ceeEEEeecCccCC
Q psy1652 73 HYRAIVFQGNSIMH 86 (86)
Q Consensus 73 hy~~~~~~~~~~~~ 86 (86)
|---.|||||+|||
T Consensus 247 ~I~~svfqgn~Im~ 260 (614)
T COG3894 247 PIQLSVFQGNPIMD 260 (614)
T ss_pred chhheeccCchHHH
Confidence 33456899999997
No 23
>PHA00425 DNA packaging protein, small subunit
Probab=23.21 E-value=50 Score=22.99 Aligned_cols=12 Identities=58% Similarity=0.578 Sum_probs=9.3
Q ss_pred HHHHHHHHhhHH
Q psy1652 17 AEAQQMLADSKA 28 (86)
Q Consensus 17 atAQQMLqDSKt 28 (86)
..||+||+|-|.
T Consensus 16 E~a~~mL~DL~d 27 (88)
T PHA00425 16 EMAQRMLADLKD 27 (88)
T ss_pred HHHHHHHHHhcC
Confidence 469999998653
Done!