Query psy1652
Match_columns 86
No_of_seqs 51 out of 53
Neff 2.3
Searched_HMMs 29240
Date Fri Aug 16 23:23:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1652.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1652hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1urf_A Protein kinase C-like 1 99.8 1.4E-21 4.8E-26 130.2 2.6 41 1-41 30-70 (81)
2 3ff5_A PEX14P, peroxisomal bio 56.1 11 0.00038 22.8 3.0 28 8-35 4-39 (54)
3 1qsd_A Protein (beta-tubulin b 54.1 11 0.00038 24.8 3.0 24 10-33 49-72 (106)
4 3mxz_A Tubulin-specific chaper 53.7 11 0.00038 25.3 3.0 26 10-35 52-77 (116)
5 1h7c_A Tubulin-specific chaper 45.3 11 0.00039 24.7 2.0 23 10-32 51-73 (108)
6 1vp7_A Exodeoxyribonuclease VI 42.9 22 0.00076 23.6 3.1 21 13-33 64-84 (100)
7 1aqt_A ATP synthase; hydrolase 23.6 41 0.0014 22.3 1.9 29 11-39 93-121 (138)
8 2ke4_A CDC42-interacting prote 23.0 46 0.0016 21.6 2.0 22 20-41 61-82 (98)
9 3m91_A Proteasome-associated A 22.3 74 0.0025 18.7 2.7 19 20-38 29-47 (51)
10 1a93_B MAX protein, coiled coi 22.2 1.1E+02 0.0039 17.0 4.3 26 14-39 7-32 (34)
11 2w84_A Peroxisomal membrane pr 21.7 55 0.0019 20.7 2.1 26 11-36 12-45 (70)
12 2xgv_A PSIV capsid N-terminal 21.3 34 0.0012 24.2 1.2 26 1-26 39-72 (142)
No 1
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=99.83 E-value=1.4e-21 Score=130.22 Aligned_cols=41 Identities=49% Similarity=0.776 Sum_probs=39.0
Q ss_pred CcccccCCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q psy1652 1 MIQSLTSGGSRDKKLLAEAQQMLADSKAKIEFLRMRILKVK 41 (86)
Q Consensus 1 Miq~ys~gssKDRKLLatAQQMLqDSKtKIE~IRMqI~k~~ 41 (86)
||++|++|+++|||||+||||||+|||+|||+|||||+...
T Consensus 30 mi~~y~~g~~~drKlLaeAQqmL~DSk~KIe~lRmqI~k~~ 70 (81)
T 1urf_A 30 MIQTYSNGSTKDRKLLLTAQQMLQDSKTKIDIIRMQLRRAL 70 (81)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999998743
No 2
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=56.12 E-value=11 Score=22.75 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=22.1
Q ss_pred CCchhH-HHHHHHHHHHHhhH-------HHHHHHHH
Q psy1652 8 GGSRDK-KLLAEAQQMLADSK-------AKIEFLRM 35 (86)
Q Consensus 8 gssKDR-KLLatAQQMLqDSK-------tKIE~IRM 35 (86)
|++-+| .|++.|-.-|+|.+ .||+||+=
T Consensus 4 ~~~~~Re~li~~Av~FL~dp~V~~sp~~~K~~FL~s 39 (54)
T 3ff5_A 4 GSPEFREPLIATAVKFLQNSRVRQSPLATRRAFLKK 39 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTGGGSCHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHhCChhhhcCCHHHHHHHHHH
Confidence 455566 89999999999987 47888763
No 3
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=54.13 E-value=11 Score=24.82 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=20.3
Q ss_pred chhHHHHHHHHHHHHhhHHHHHHH
Q psy1652 10 SRDKKLLAEAQQMLADSKAKIEFL 33 (86)
Q Consensus 10 sKDRKLLatAQQMLqDSKtKIE~I 33 (86)
.+++.+|.+.+.|+-|++.+++--
T Consensus 49 Kkq~evl~Et~~mipd~~~Rl~~a 72 (106)
T 1qsd_A 49 KKQEEVLDDTKRLLPTLYEKIREF 72 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 367899999999999999987643
No 4
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=53.69 E-value=11 Score=25.29 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=21.6
Q ss_pred chhHHHHHHHHHHHHhhHHHHHHHHH
Q psy1652 10 SRDKKLLAEAQQMLADSKAKIEFLRM 35 (86)
Q Consensus 10 sKDRKLLatAQQMLqDSKtKIE~IRM 35 (86)
.+++.+|.+++.|+-|++.|++----
T Consensus 52 Kkq~evL~Et~~mipd~~~RL~~a~~ 77 (116)
T 3mxz_A 52 KQQENVLGESRMMIPDCHKRLESALA 77 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46789999999999999999875433
No 5
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=45.33 E-value=11 Score=24.73 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=19.9
Q ss_pred chhHHHHHHHHHHHHhhHHHHHH
Q psy1652 10 SRDKKLLAEAQQMLADSKAKIEF 32 (86)
Q Consensus 10 sKDRKLLatAQQMLqDSKtKIE~ 32 (86)
.+++.+|.+++.|+-|++.|++-
T Consensus 51 Kkq~evl~Et~~mipd~~~Rl~~ 73 (108)
T 1h7c_A 51 KKQAEILQESRMMIPDCQRRLEA 73 (108)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHH
Confidence 36789999999999999998764
No 6
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=42.92 E-value=22 Score=23.57 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q psy1652 13 KKLLAEAQQMLADSKAKIEFL 33 (86)
Q Consensus 13 RKLLatAQQMLqDSKtKIE~I 33 (86)
-+|+..++++|++.+.||+.|
T Consensus 64 ~~L~k~C~~~L~~AE~kV~~L 84 (100)
T 1vp7_A 64 VELARVCQDRLAQAEQQVKVL 84 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999998
No 7
>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A {Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J 1bsh_A 1bsn_A 1fs0_E 3oaa_H*
Probab=23.62 E-value=41 Score=22.29 Aligned_cols=29 Identities=10% Similarity=0.218 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy1652 11 RDKKLLAEAQQMLADSKAKIEFLRMRILK 39 (86)
Q Consensus 11 KDRKLLatAQQMLqDSKtKIE~IRMqI~k 39 (86)
+-++.+..|++.|++.+..+|+.|.++..
T Consensus 93 ~a~~a~~~Ae~~l~~~~~~~~~~~a~~al 121 (138)
T 1aqt_A 93 RAMEAKRKAEEHISSSHGDVDYAQASAEL 121 (138)
T ss_dssp HHHHHHHHHHHHHTTCSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcChHHHHHHHHHH
Confidence 34588999999999888788888877654
No 8
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=23.04 E-value=46 Score=21.57 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=17.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHhh
Q psy1652 20 QQMLADSKAKIEFLRMRILKVK 41 (86)
Q Consensus 20 QQMLqDSKtKIE~IRMqI~k~~ 41 (86)
++-|.+...||+.||+.+....
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q 82 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYE 82 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788899999999886643
No 9
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=22.26 E-value=74 Score=18.70 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=15.7
Q ss_pred HHHHHhhHHHHHHHHHHHH
Q psy1652 20 QQMLADSKAKIEFLRMRIL 38 (86)
Q Consensus 20 QQMLqDSKtKIE~IRMqI~ 38 (86)
-.+|++++.+|+-|+=+|-
T Consensus 29 ~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 29 METLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3579999999999987763
No 10
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=22.24 E-value=1.1e+02 Score=17.02 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy1652 14 KLLAEAQQMLADSKAKIEFLRMRILK 39 (86)
Q Consensus 14 KLLatAQQMLqDSKtKIE~IRMqI~k 39 (86)
+=-++-||=..|-|.+..+|++||..
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 33467788899999999999999964
No 11
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=21.67 E-value=55 Score=20.70 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=20.9
Q ss_pred hhH-HHHHHHHHHHHhhH-------HHHHHHHHH
Q psy1652 11 RDK-KLLAEAQQMLADSK-------AKIEFLRMR 36 (86)
Q Consensus 11 KDR-KLLatAQQMLqDSK-------tKIE~IRMq 36 (86)
-.| .|++.|-.-|+|.+ .||+||+=+
T Consensus 12 ~~Re~li~~Av~FLqdp~V~~sp~~~K~~FL~sK 45 (70)
T 2w84_A 12 LPREPLIATAVKFLQNSRVRQSPLATRRAFLKKK 45 (70)
T ss_dssp CCCHHHHHHHHHHHCSTTGGGSCHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHhCChhhhhCCHHHHHHHHHHc
Confidence 345 89999999999987 588888743
No 12
>2xgv_A PSIV capsid N-terminal domain; retroviral capsid, viral protein; 2.00A {Microcebus murinus}
Probab=21.29 E-value=34 Score=24.25 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=17.8
Q ss_pred CcccccCC-CchhH-HHH------HHHHHHHHhh
Q psy1652 1 MIQSLTSG-GSRDK-KLL------AEAQQMLADS 26 (86)
Q Consensus 1 Miq~ys~g-ssKDR-KLL------atAQQMLqDS 26 (86)
|.+.+|.| ++.|- .|| ++|.|||+|-
T Consensus 39 mF~AlSeg~Tp~Dln~mLn~vgghqaamQ~lkd~ 72 (142)
T 2xgv_A 39 YWGLISQDLSSREQVQLLEVVPGLQADKDMLGAY 72 (142)
T ss_dssp HHHHHTTTCCHHHHHHHHHHCCSCHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHhccccHHHHHHHHHH
Confidence 45667777 77776 444 3688998874
Done!