RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1652
(86 letters)
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain,
helical, coiled coil, ATP-binding,
serine/threonine-protein kinase, phosphorylation; NMR
{Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Length = 81
Score = 57.0 bits (137), Expect = 1e-12
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 1 MIQSLTSGGSRDKKLLAEAQQMLADSKAKIEFLRMRILKVKQSKNHHHH 49
MIQ+ ++G ++D+KLL AQQML DSK KI+ +RM++ + Q+ +
Sbjct: 30 MIQTYSNGSTKDRKLLLTAQQMLQDSKTKIDIIRMQLRRALQADQLENQ 78
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.026
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 45 NHHHHHSSGDLNSNGDQHSHKGKLLE 70
+HHHHH D + Q+ +K +L
Sbjct: 1 HHHHHH--MDFETGEHQYQYK-DILS 23
>3rce_A Oligosaccharide transferase to N-glycosylate PROT;
oligosaccharyltransferase, membrane protein, helical
bundle, glycosylation, acceptor peptide, plasma
membrane; HET: PPN; 3.40A {Campylobacter lari}
Length = 724
Score = 30.0 bits (66), Expect = 0.067
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 35 MRILKVKQSKNHHHHH 50
+I ++K+ +HHHHH
Sbjct: 705 AKIYRLKREFHHHHHH 720
>3lsn_A Geranyltranstransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas
fluorescens} PDB: 3lji_A* 3p41_A*
Length = 304
Score = 29.1 bits (66), Expect = 0.12
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 9 GSRDK--KLLAEAQQMLADSKAKIEFLRM--RILKVKQSKNHHHHH 50
+++ +L +A L A E LR R + ++S+ HHHHH
Sbjct: 258 AAKEYALELRDQALHALRPFDAAAEPLRELARYIVERRSEGHHHHH 303
>4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI,
structural genomics, lyase; 1.70A {Actinobacillus
succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A*
1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A
Length = 464
Score = 29.0 bits (65), Expect = 0.12
Identities = 10/13 (76%), Positives = 11/13 (84%), Gaps = 1/13 (7%)
Query: 46 HHHHHSSG-DLNS 57
HHHHHSSG DL +
Sbjct: 3 HHHHHSSGVDLGT 15
>3mx1_A ECO29KIR; type II restriction endonuclease, GIY-YIG endonuclease,
HYDR; 2.30A {Escherichia coli} PDB: 3mx4_A* 3nic_A*
Length = 235
Score = 28.7 bits (63), Expect = 0.19
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 43 SKNHHHHHSSGDLNSNGDQHSHKGKLLESQH 73
+ +HHHHH S L G H K S+H
Sbjct: 2 ASSHHHHHHSSGLVPRGSSMGHNKKFDRSEH 32
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine
synthase, pseudouridylation, H/ACA RNA; 1.90A
{Saccharomyces cerevisiae} PDB: 3uai_C
Length = 114
Score = 28.0 bits (62), Expect = 0.21
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 43 SKNHHHHHSSGDLNSNGDQ 61
S +HHHHHSSG +
Sbjct: 3 SSHHHHHHSSGLVPRGSHM 21
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas
oxidoreductase; 3.15A {Micromonospora carbonacea}
Length = 395
Score = 28.3 bits (64), Expect = 0.22
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 17 AEAQQMLADSKAKIEFLRMRILKVKQSKNHHHHHSSGDLNSNGDQHS 63
A A+ ++A ++ LR + + + SGD + G +
Sbjct: 280 AGARALVAGLDTRLYALRTTVGAALTNADAASVDLSGDPDERGRRMM 326
>3lxz_A Glutathione S-transferase family protein; structural genomics,
PP0183, PSI-2, protein structure initiative; 1.76A
{Pseudomonas putida} PDB: 3pr8_A*
Length = 229
Score = 28.0 bits (63), Expect = 0.27
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 19 AQQMLADSKAKIEFLRMRILKVKQSKNHHHHH 50
++LAD +A + I K+ +HHHHH
Sbjct: 198 MPRILADKEASMPAFMEMIRSGKREGHHHHHH 229
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein
structure initiative, NYSGXRC, biosynthesis,
transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB:
3lvs_A
Length = 297
Score = 27.9 bits (63), Expect = 0.33
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 9 GSRDK--KLLAEAQQMLADSKAKIEFLRM---RILKVKQSKNHHHHH 50
G++ + L+AEA+ LA LR +++ + +HHHHH
Sbjct: 251 GAKSRAADLVAEAEAALAPYGEAASTLRACARYVIERDKEGHHHHHH 297
>3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha
proteobacterium BAL199}
Length = 390
Score = 28.0 bits (63), Expect = 0.33
Identities = 10/13 (76%), Positives = 11/13 (84%), Gaps = 1/13 (7%)
Query: 46 HHHHHSSG-DLNS 57
HHHHHSSG DL +
Sbjct: 3 HHHHHSSGVDLGT 15
>2wst_A Putative fiber protein; viral protein; 3.20A {Porcine adenovirus
4}
Length = 208
Score = 27.7 bits (61), Expect = 0.44
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 45 NHHHHHSSGDLNSNGDQHSHKGKL 68
+HHHHH S L G +
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGG 27
>3sd7_A Putative phosphatase; structural genomics, haloacid
dehalogenase-like hydrolase, H center for structural
genomics of infectious diseases; HET: PGE; 1.70A
{Clostridium difficile}
Length = 240
Score = 27.6 bits (62), Expect = 0.47
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 46 HHHHHSSGDLNSNGDQHSHKGKLLESQHYRAIVF 79
HHHHH S ++ G ++ + ++Y ++F
Sbjct: 2 HHHHHHSSGVDL-GTENLYFQSNAMKKNYEIVLF 34
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase,
cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Length = 381
Score = 27.3 bits (61), Expect = 0.49
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>2ium_A Avian adenovirus CELO long fibre; receptor-binding, trimeric
proteins, viral fibres, beta-sandwich, fiber protein,
viral protein; 1.6A {Avian adenovirus GAL1} PDB: 2iun_A
Length = 248
Score = 27.6 bits (60), Expect = 0.49
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>2nsf_A Hypothetical protein CGL3021; metal binding, isomerase; 1.75A
{Corynebacterium glutamicum} SCOP: a.213.1.4 d.106.1.2
PDB: 2nsg_A
Length = 261
Score = 27.4 bits (60), Expect = 0.51
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 43 SKNHHHHHSSGDLNSNGD 60
S +HHHHHSSG +
Sbjct: 3 SSHHHHHHSSGLVPRGSH 20
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 27.2 bits (60), Expect = 0.51
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 13 KKLLAEAQQMLADSKAKIEFLRMRILKVKQSKNHHHHH 50
L+ ++ + I + I K+ + +HHHHH
Sbjct: 233 PHLVQTITEVALNKSESIFVDKNLIDKLAAADHHHHHH 270
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH,
membrane fusion, trafficking, transmembrane, membrane
protein; 3.20A {Pyrococcus horikoshii}
Length = 188
Score = 27.2 bits (61), Expect = 0.53
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 14 KLLAEAQQMLADSKAKIEFLR-----MRILKVKQSKNHHHHH 50
+ L EA +++++ ++ LR + K + HHHHH
Sbjct: 147 EKLREAAEIISEHPMALQ-LRTLQTISDVAGDKSNLEHHHHH 187
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling
protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens}
PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B
1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A*
1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B*
...
Length = 201
Score = 27.0 bits (60), Expect = 0.59
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 43 SKNHHHHHSSGDLNSNGDQHSHKGKL 68
S +HHHHHSSG + + + KL
Sbjct: 3 SSHHHHHHSSGLVPRGSHMAAIRKKL 28
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet,
PSI, protein structure initiative; NMR {Archaeoglobus
fulgidus} SCOP: g.41.8.4
Length = 66
Score = 26.3 bits (58), Expect = 0.60
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 26 SKAKIEFLRMRILKVKQSKNHHHHH 50
K I+ + + + ++HHHHH
Sbjct: 42 GKGNIKAEIIEYVDQIELEHHHHHH 66
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis}
PDB: 3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 27.3 bits (61), Expect = 0.64
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase,
magnesium binding, enzyme function initiative, enolase,
isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A
4dhg_A
Length = 441
Score = 27.0 bits (60), Expect = 0.72
Identities = 10/14 (71%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
Query: 45 NHHHHHSSG-DLNS 57
+HHHHHSSG DL +
Sbjct: 2 HHHHHHSSGVDLGT 15
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 26.7 bits (59), Expect = 0.75
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 27 KAKIEFLRMRILKVKQSKNHHHH 49
KI + I+K ++S +HHHH
Sbjct: 148 VRKILGETVYIIKGEKSHHHHHH 170
>3ubk_A Glutathione transferase; GSH binding; 1.95A {Leptospira interrogans
serovar lai} PDB: 3ubl_A*
Length = 242
Score = 26.9 bits (60), Expect = 0.78
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 6/39 (15%)
Query: 19 AQQMLADSKAKIEFLRMRILKVK------QSKNHHHHHS 51
+ D + + L K+ QS +HHHH S
Sbjct: 198 PALVEKDKQILKKILARAKTKIGAENLYFQSHHHHHHWS 236
>2ffc_A Orotidine 5-monophosphate decarboxylase; PV-PF10_0225, SGC,
structural genomics, struc genomics consortium, lyase;
HET: U5P; 1.70A {Plasmodium vivax} SCOP: c.1.2.3 PDB:
2guu_A*
Length = 353
Score = 26.7 bits (58), Expect = 0.91
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase,
gibberellin signaling pathway, hydrolase, nucleus,
hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp}
PDB: 3ed1_A*
Length = 365
Score = 26.6 bits (59), Expect = 0.93
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 16 LAEAQQMLADSKAKIEFLRMRILKVKQSKNHHHHH 50
+++ + FL + +HHHHH
Sbjct: 333 TVHYHEVMEEISD---FLNANLYYGSHHHHHHHHH 364
>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET:
3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A
Length = 413
Score = 26.9 bits (59), Expect = 0.96
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>3va8_A Probable dehydratase; enolase, magnesium binding site, lyase;
2.00A {Gibberella zeae}
Length = 445
Score = 26.6 bits (59), Expect = 1.00
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 45 NHHHHHSSG 53
+HHHHHSSG
Sbjct: 2 HHHHHHSSG 10
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES;
2.10A {Escherichia coli} SCOP: d.110.2.1
Length = 195
Score = 26.4 bits (58), Expect = 1.0
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 12 DKKLLAEAQQMLADSKAKIEFLRMRILKVKQSKNHHHHH 50
D++ L + L A ++ + + +HHHHH
Sbjct: 156 DEQGLRQLVAQLEKVLATTDYKKFFASVAGEGGSHHHHH 194
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable
transcriptional repressor ARSR family, structural
genomics, PSI-2; 1.48A {Rhodococcus SP}
Length = 151
Score = 26.3 bits (58), Expect = 1.1
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 43 SKNHHHHHSSGDLNSNGDQH 62
S +HHHHHSSG N H
Sbjct: 3 SSHHHHHHSSGRENLYFQGH 22
>2jmr_A FIMF; protein, cell adhesion; NMR {Escherichia coli}
Length = 179
Score = 26.3 bits (58), Expect = 1.1
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 42 QSKNHHHHHSSGD 54
Q +HHHHH D
Sbjct: 155 QDNHHHHHHKQAD 167
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase,
MREB, PARM, structural PROT; 1.90A {Thermoplasma
acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A
2fsn_A*
Length = 346
Score = 26.3 bits (57), Expect = 1.2
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 43 SKNHHHHHSSGDL 55
S +HHHHHSSG +
Sbjct: 3 SSHHHHHHSSGLV 15
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP:
a.128.1.1
Length = 301
Score = 26.4 bits (59), Expect = 1.2
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 9 GSRDK--KLLAEAQQMLA--DSKAKIEFLR--MRILKVKQSKNHHHHH 50
G+ DK A L D + + L + + + K HHHHH
Sbjct: 253 GAEDKLTYHRDAAVDELTQIDEQFNTKHLLEIVDLFYSRDHKGHHHHH 300
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 26.1 bits (58), Expect = 1.3
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 11/36 (30%)
Query: 43 SKNHHHHHSSGDLNSNGDQHSHKGKLLESQHYRAIV 78
S +HHHHHSSG + + SH K +V
Sbjct: 3 SSHHHHHHSSGLV----PRGSHMSK-------NILV 27
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase,
structural genomics, PSI, PR structure initiative; HET:
IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Length = 309
Score = 26.1 bits (58), Expect = 1.3
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 7/49 (14%)
Query: 9 GSRDK--KLLAEAQQMLA---DSKAKIEFLRM--RILKVKQSKNHHHHH 50
G+ + Q L S + + + ++ HHHHH
Sbjct: 260 GANQALIDTIHSGQAALQGLPTSTQRDDLAAFFSYFDTERVNEGHHHHH 308
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 2.06A {Nitrosospira multiformis}
Length = 160
Score = 26.2 bits (57), Expect = 1.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 20 QQMLADSKAKIEFLRMRILKVKQSKNHHHHH 50
+ +LAD A+ R + Q ++HHHHH
Sbjct: 130 RSLLADLAAEFTSESRRSEWIDQLEHHHHHH 160
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 26.3 bits (58), Expect = 1.3
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 16 LAEAQQMLADSKAKIEFLRMRILKV-----KQSKNHHHHH 50
L Q +L I++L + + +++HHHHH
Sbjct: 928 LDIFQTVLETITKNIKWLEKNLPTLRTWLMVNTRHHHHHH 967
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 26.2 bits (58), Expect = 1.3
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>4ak5_A Anhydro-alpha-L-galactosidase; hydrolase, marine glycoside
hydrolase, marine polysaccharide degradation, marine
cazymes, AGAR metabolism; 1.70A {Bacteroides plebeius}
PDB: 4ak7_A* 4ak6_A
Length = 404
Score = 26.3 bits (57), Expect = 1.4
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 43 SKNHHHHHSSGDLNSNGDQHSHKGKLLESQ 72
S +HHHHHSSG + S+ +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASNTQTIAVDD 32
>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 343
Score = 26.2 bits (57), Expect = 1.4
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 43 SKNHHHHHSSGDLNSNGDQHSHKGKLLESQ 72
S +HHHHHSSG L G + G++ +
Sbjct: 3 SSHHHHHHSSG-LVPRGSHMASMGRIESAF 31
>3r1k_A Enhanced intracellular surviVal protein; GNAT, acetyltransferase,
transferase; HET: COA; 1.95A {Mycobacterium
tuberculosis}
Length = 428
Score = 26.2 bits (57), Expect = 1.4
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 43 SKNHHHHHSSGDL 55
S +HHHHHSSG +
Sbjct: 3 SSHHHHHHSSGLV 15
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein
structure initiative, nysgrc; 2.30A {Helicobacter
pylori} PDB: 3q1o_A*
Length = 311
Score = 26.1 bits (58), Expect = 1.5
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 11/51 (21%)
Query: 9 GSRDK--KLLAEAQQMLADSKAKIEFLRM-------RILKVKQSKNHHHHH 50
+ + L E L K L+ + K +HHHHH
Sbjct: 263 RANNYAQTLKTEVLNDLDALKPAYPLLQENLNALLNTL--FKGEGHHHHHH 311
>3qll_A Citrate lyase; beta barrel; 2.45A {Yersinia pestis}
Length = 316
Score = 26.0 bits (58), Expect = 1.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 43 SKNHHHHHSSGDLNSNGDQHS 63
S +HHHHHSSG + S
Sbjct: 3 SSHHHHHHSSGLVPRGSHMAS 23
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold,
GTPase, GTP binding, protein binding, signali protein;
HET: GNP; 2.30A {Homo sapiens}
Length = 204
Score = 25.9 bits (57), Expect = 1.5
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>3na5_A Phosphoglucomutase; isomerase, metal binding; HET: BTB; 1.70A
{Salmonella enterica subsp} PDB: 3olp_A 2fuv_A*
Length = 570
Score = 26.1 bits (58), Expect = 1.5
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 45 NHHHHHSSGDLNSNGDQHSHKGKLLESQHYRA 76
+HHHHHSSG G ++ + + H RA
Sbjct: 2 HHHHHHSSG--VDLGTENLYFQSNAMAIHNRA 31
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 25.7 bits (57), Expect = 1.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 43 SKNHHHHHSSGDLNSNGDQHSHKGKLL 69
S +HHHHHSSG + K L
Sbjct: 3 SSHHHHHHSSGLVPRGSIWSDFLFKFL 29
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold,
structural genomics, PSI-2; NMR
{Methanothermobacterthermautotrophicus str}
Length = 153
Score = 25.9 bits (56), Expect = 1.6
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>2wmf_A Fucolectin-related protein; hydrolase, glycoside hydrolase, blood
group antigen, fucose utilization; 1.50A {Streptococcus
pneumoniae} PDB: 2wmh_A* 2wmg_A*
Length = 581
Score = 26.0 bits (56), Expect = 1.7
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>3kkw_A Putative uncharacterized protein; acetyltransferase, GNAT family,
structural genomics, PSI, protein structure initiative;
1.41A {Pseudomonas aeruginosa PAO1}
Length = 182
Score = 25.9 bits (57), Expect = 1.7
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 43 SKNHHHHHSSGDLNSNGDQH 62
S +HHHHHSSG N H
Sbjct: 3 SSHHHHHHSSGRENLYFQGH 22
>2qyg_A Ribulose bisphosphate carboxylase-like protein 2;
beta-alpha-barrel, unknown function; 3.30A
{Rhodopseudomonas palustris}
Length = 452
Score = 25.8 bits (56), Expect = 1.7
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous
motif, winged-helix, biosynthetic protein; 2.10A {Homo
sapiens} SCOP: a.4.5.53 a.118.1.18
Length = 226
Score = 25.8 bits (56), Expect = 1.8
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 29 KIEFLRM-RILKVKQSKNHHHHH 50
KI+F + I+ Q ++HHHHH
Sbjct: 204 KIDFDSVSSIMASSQLEHHHHHH 226
>1y8a_A Hypothetical protein AF1437; structural genomics, protein structu
initiative, PSI, midwest center for structural
genomics; 1.40A {Archaeoglobus fulgidus} SCOP:
c.108.1.24
Length = 332
Score = 25.9 bits (56), Expect = 1.8
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 43 SKNHHHHHSSGDLN 56
S +HHHHHSSG N
Sbjct: 3 SSHHHHHHSSGREN 16
>3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein;
enolase, magnesium binding site, lyase; HET: P4C; 1.80A
{Bradyrhizobium SP} PDB: 3tte_A*
Length = 383
Score = 25.7 bits (57), Expect = 1.8
Identities = 10/13 (76%), Positives = 11/13 (84%), Gaps = 1/13 (7%)
Query: 45 NHHHHHSSG-DLN 56
+HHHHHSSG DL
Sbjct: 2 HHHHHHSSGVDLG 14
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
transferase; 2.33A {Sinorhizobium meliloti}
Length = 520
Score = 25.6 bits (57), Expect = 1.9
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 15/46 (32%)
Query: 45 NHHHHHSSG-DLNSNGDQHSHKGKLLESQHY----------RAIVF 79
+HHHHHSSG DL + + + + + RAIVF
Sbjct: 2 HHHHHHSSGVDLGT----ENLYFQSMMGGYILAIDQGTTSTRAIVF 43
>2pd0_A Hypothetical protein; structural genomics, structural genomics
consortium, SGC, UN function; HET: MES; 2.30A
{Cryptosporidium parvum}
Length = 223
Score = 25.9 bits (56), Expect = 1.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 43 SKNHHHHHSSGDLNSNGD 60
S +HHHHHSSG +
Sbjct: 3 SSHHHHHHSSGLVPRGSK 20
Score = 23.9 bits (51), Expect = 7.7
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 45 NHHHHHSSGDLNSNGDQ 61
+HHHHH S L G +
Sbjct: 4 SHHHHHHSSGLVPRGSK 20
>4dye_A Isomerase; enolase family protein, EFI, enzym function
initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A
Length = 398
Score = 25.7 bits (57), Expect = 1.9
Identities = 10/12 (83%), Positives = 11/12 (91%), Gaps = 1/12 (8%)
Query: 45 NHHHHHSSG-DL 55
+HHHHHSSG DL
Sbjct: 2 HHHHHHSSGVDL 13
>3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site,
lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A*
Length = 445
Score = 25.8 bits (57), Expect = 2.0
Identities = 10/14 (71%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
Query: 45 NHHHHHSSG-DLNS 57
+HHHHHSSG DL +
Sbjct: 2 HHHHHHSSGVDLGT 15
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural
genomics, PSI-2, protein structure initiative; 1.65A
{Enterococcus faecalis}
Length = 229
Score = 25.6 bits (57), Expect = 2.0
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 13 KKLLAEAQQMLADSKAKIEFL 33
K+ +A++ L S ++ L
Sbjct: 84 KEYWEKAKKELGISTLTMDIL 104
>2r6u_A Uncharacterized protein; structural genomics, PSI-2, RHA04853,
MCSG, protein structur initiative, midwest center for
structural genomics; 1.50A {Rhodococcus SP}
Length = 148
Score = 25.6 bits (56), Expect = 2.1
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 43 SKNHHHHHSSGDLN 56
S +HHHHHSSG N
Sbjct: 3 SSHHHHHHSSGREN 16
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold,
trans; 2.49A {Streptomyces SP}
Length = 385
Score = 25.5 bits (55), Expect = 2.1
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin
salvage, drug resistance; HET: NAP FE1; 2.61A
{Leishmania major} SCOP: c.2.1.2
Length = 328
Score = 25.5 bits (56), Expect = 2.2
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 43 SKNHHHHHSSGDLNSNGDQHSHKGKLLESQHYRAIVFQGNSIM 85
S +HHHHHSSG + + SH G H+ + + S M
Sbjct: 3 SSHHHHHHSSGLVP----RGSHMGSSHHHHHHSSGLVPRGSHM 41
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 25.6 bits (57), Expect = 2.2
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 9/36 (25%)
Query: 17 AEAQQMLADSKA---KIEFLRMRILKVKQSKNHHHH 49
A ++ ++ K+ L + +HHHH
Sbjct: 311 KAAVDVVQSAEKTKGKV------FLTSYEGHHHHHH 340
>2ozn_A O-GLCNACASE NAGJ; EF hand, toxin; 1.60A {Clostridium perfringens}
SCOP: b.2.2.2 PDB: 2o4e_A 2jh2_A
Length = 165
Score = 25.6 bits (55), Expect = 2.2
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 43 SKNHHHHHSSGDLNSNGDQHSHKGKLLESQ 72
S +HHHHHSSG + S + E
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASKLKENAEVT 32
>3rbh_A Alginate production protein ALGE; beta-barrel, alginate export,
membrane protein, transport PR; HET: C8E; 2.30A
{Pseudomonas aeruginosa}
Length = 479
Score = 25.7 bits (55), Expect = 2.3
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>3sxn_A Enhanced intracellular surviVal protein; GNAT fold,
acetyltransferase, acetyl COA binding, transferas; HET:
COA; 2.03A {Mycobacterium smegmatis}
Length = 422
Score = 25.4 bits (55), Expect = 2.4
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 46 HHHHHSSGDLNSNG 59
HHHHH S L G
Sbjct: 5 HHHHHHSSGLVPRG 18
>3na2_A Uncharacterized protein; beta-fold, metagenome, structural
genomics, PSI-2, protein S initiative, midwest center
for structural genomics; 2.29A {Leptospirillum rubarum}
Length = 172
Score = 25.5 bits (55), Expect = 2.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 43 SKNHHHHHSSGDLNSNGDQHSHKG 66
S +HHHHHSSG N H G
Sbjct: 3 SSHHHHHHSSGRENLYFQGHVEPG 26
>1z9v_A Conserved hypothetical protein MTH0776; solution structure,
archaeabacterium, unknown function; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 121
Score = 25.1 bits (54), Expect = 2.4
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>2qng_A Uncharacterized protein SAV2460; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.40A
{Streptomyces avermitilis}
Length = 199
Score = 25.3 bits (55), Expect = 2.5
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 43 SKNHHHHHSSGDLN 56
S +HHHHHSSG N
Sbjct: 3 SSHHHHHHSSGREN 16
>2h7w_A Chagasin; beta-strands, immunoglobulin-fold, hydrolase inhibitor;
1.70A {Trypanosoma cruzi} SCOP: b.1.26.1 PDB: 2nnr_A
2oul_B 3cbj_B 3cbk_B 3e1z_A 2fo8_A 2nqd_A*
Length = 131
Score = 25.0 bits (54), Expect = 2.6
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 43 SKNHHHHHSSGDLNSNGDQHSHKGKLLESQHYRAIVFQGNSIM 85
S +HHHHHSSG+ SH K+ ++ + + ++
Sbjct: 3 SSHHHHHHSSGENLYFQGHMSH--KVTKAHNGATLTVAVGELV 43
>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase,
neuraminidase; HET: SKD; 1.54A {Streptococcus
pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A*
Length = 686
Score = 25.7 bits (55), Expect = 2.6
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 45 NHHHHHSSG-DLNSNGDQHSHKGKLLESQHYRAIVFQGNS 83
+HHHHHSSG ++ G + G+L S ++ +Q N+
Sbjct: 2 HHHHHHSSGLEVLFQGPNELNYGQLSISPIFQGGSYQLNN 41
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase
family, kijanose, kijani FAD, flavoprotein; HET: TYD;
2.05A {Actinomadura kijaniata}
Length = 439
Score = 25.3 bits (56), Expect = 2.6
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 19 AQQMLADSKAKIEFLRMRILKVKQSKNHHHHHSSGDLNSNGDQHSH 64
A ++A+ +++ LR + + SGD++ G Q
Sbjct: 293 ALTLVAEIDSRLYALRATAGSALTAADALSADLSGDMDERGRQMMR 338
>1y08_A Hypothetical protein SPY0861; cysteine proteinase, papain-like
fold with major insertions, hydrolase; 1.93A
{Streptococcus pyogenes} SCOP: d.3.1.12 PDB: 2avw_A
2au1_A
Length = 323
Score = 25.4 bits (54), Expect = 2.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 43 SKNHHHHHSSGDLNSNGDQ 61
S +HHHHHSSG +
Sbjct: 3 SSHHHHHHSSGLVPRGSHM 21
>3p7n_A Sensor histidine kinase; LOV domain, light-activated
transcription factor, DNA bindin; HET: FMN; 2.10A
{Erythrobacter litoralis}
Length = 258
Score = 25.3 bits (55), Expect = 2.6
Identities = 7/43 (16%), Positives = 13/43 (30%)
Query: 44 KNHHHHHSSGDLNSNGDQHSHKGKLLESQHYRAIVFQGNSIMH 86
+ HHHH G + G Q + + + +
Sbjct: 2 RGSHHHHHHGMASMTGGQQMGRDLYDDDDKDHPFTMGQDRPID 44
>1oqv_A Toxin-coregulated pilus subunit; TCPA, type IV pilin, pilin,
pilus filament, forming protein, adhesin, fimbriae,
cell adhesion; 1.30A {Vibrio cholerae} SCOP: d.24.1.2
PDB: 3hrv_A
Length = 192
Score = 25.1 bits (54), Expect = 2.6
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II,
nysgrc., structural genomics, protein structure
initiative; 1.87A {Archaeoglobus fulgidus}
Length = 305
Score = 25.4 bits (55), Expect = 2.7
Identities = 4/19 (21%), Positives = 5/19 (26%)
Query: 5 LTSGGSRDKKLLAEAQQML 23
T G + E M
Sbjct: 10 ATCGERIEDSTAVEGLAMF 28
>3kg4_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein struct initiative; 1.95A {Mannheimia
succiniciproducens}
Length = 235
Score = 25.3 bits (55), Expect = 2.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 30 IEFLRMRILKVKQSKNHHHHH 50
I+ +VK+ +HHHHH
Sbjct: 215 IDVPPFYAEEVKREGHHHHHH 235
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein,
oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Length = 428
Score = 25.3 bits (56), Expect = 2.7
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 14 KLLAE---AQQMLADSKAKIEFLRMRILK 39
K L +A+S+ IE +R+ LK
Sbjct: 310 KKLYAHEVVAHWIAESRIAIEKIRLLTLK 338
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Length = 367
Score = 25.3 bits (56), Expect = 2.8
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 12/41 (29%)
Query: 43 SKNHHHHHSSGDLNSNGDQHSHKGKLLESQHYRAIVFQGNS 83
S +HHHHHSSG + + ++F G S
Sbjct: 3 SSHHHHHHSSGLVP-----RGSHMEF-------CVLFGGAS 31
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural
genomics protein structure initiative; 1.50A
{Campylobacter jejuni}
Length = 291
Score = 25.3 bits (56), Expect = 2.8
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 9 GSRDK--KLLAEAQQMLADSKAKIEFLRMRIL-KVKQSKNHHHH 49
+ LL E +Q L K+ + ++ + + +HHHH
Sbjct: 248 QAIKTKENLLNECEQDLEKLNEKLAQMIQNLIIQYLEGHHHHHH 291
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain,
homodimer, exosome, cell-death-related DNAS hydrolase;
3.92A {Caenorhabditis elegans}
Length = 222
Score = 25.1 bits (55), Expect = 2.8
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 2 IQSLTSGGSRDKKLLAEAQQMLADSKAKI-----EFLRMRILKVKQSKNHHHHH 50
+ ++ + G D L A + S + I ++ ++ +Q ++HHHHH
Sbjct: 169 VCAMDAIGHWDFIQLEAAWSLAQPSASAIFDFYKTVMKRKLSVDEQLEHHHHHH 222
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 25.3 bits (56), Expect = 2.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 43 SKNHHHHHSSGDLNSNGDQHSHKGKLL 69
S +HHHHHSSG + + ++ K++
Sbjct: 3 SSHHHHHHSSGLVPRGSEDYNFVFKVV 29
>4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain
protein; putative racemase, nysgrc, structural
genomics, PSI-biology; 2.00A {Paracoccus denitrificans}
Length = 391
Score = 25.3 bits (56), Expect = 2.8
Identities = 10/12 (83%), Positives = 11/12 (91%), Gaps = 1/12 (8%)
Query: 45 NHHHHHSSG-DL 55
+HHHHHSSG DL
Sbjct: 2 HHHHHHSSGVDL 13
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 25.2 bits (56), Expect = 2.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 45 NHHHHHSSGDLNSNGDQHSHKGKLLESQ 72
+HHHHHSSG + + L E++
Sbjct: 7 HHHHHHSSGHIEGRHMKLEFMNLLSENK 34
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain,
transcription, RNA binding protein; 2.27A {Pseudomonas
aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5
c.55.3.13 PDB: 3bzk_A 2oce_A
Length = 785
Score = 25.2 bits (56), Expect = 3.0
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 8/44 (18%)
Query: 7 SGGSRDKKLLAEAQQMLADSKAKIEFLRMRILKVKQSKNHHHHH 50
G+ + A +A A K + K+HHHHH
Sbjct: 750 ERGAPRGQSAPPANNAMAALFAN--------AKQLKKKHHHHHH 785
>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein
structure initiative, midwest center for structural
genomics; 2.35A {Agrobacterium tumefaciens str} SCOP:
d.129.3.8
Length = 156
Score = 25.1 bits (54), Expect = 3.0
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 43 SKNHHHHHSSGDLN 56
S +HHHHHSSG N
Sbjct: 3 SSHHHHHHSSGREN 16
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics,
center for structural genomics of infec diseases,
csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa}
PDB: 4ebk_A*
Length = 272
Score = 25.3 bits (54), Expect = 3.0
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 43 SKNHHHHHSSGDLN 56
S +HHHHHSSG N
Sbjct: 3 SSHHHHHHSSGREN 16
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 25.0 bits (55), Expect = 3.1
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>2qko_A Possible transcriptional regulator, TETR family P; TETR family
protein, structural genomics, P protein structure
initiative; 2.35A {Rhodococcus SP}
Length = 215
Score = 25.1 bits (55), Expect = 3.1
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage
pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB:
2yrf_A*
Length = 374
Score = 25.0 bits (55), Expect = 3.1
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 43 SKNHHHHHSSGDLNSNGDQHSHKGKLLESQHYRAIVFQGNSI 84
S +HHHHHSSG + +H + R++ ++ +I
Sbjct: 3 SSHHHHHHSSGLVPRGSHMMTHSFAVP-----RSVEWKETAI 39
>2kss_A Carotenogenesis protein CARS; antirepressor, activator,
carotenoid biosynthesis, transcription, transcription
regulation, transcription REGU; NMR {Myxococcus
xanthus}
Length = 106
Score = 24.7 bits (53), Expect = 3.1
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>3b3e_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.80A
{Bacillus subtilis} PDB: 3b3d_A
Length = 310
Score = 25.2 bits (56), Expect = 3.1
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 25.3 bits (55), Expect = 3.2
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>3fuy_A HFX_CASS1, putative integron gene cassette protein; integron
cassette protein, mobIle metagenome, structural
genomics, PSI-2; 2.00A {Uncultured bacterium}
Length = 179
Score = 25.0 bits (54), Expect = 3.2
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 43 SKNHHHHHSSGDLN 56
S +HHHHHSSG N
Sbjct: 3 SSHHHHHHSSGREN 16
>4f0w_A Effector TSE1, putative uncharacterized protein; NLPC/P60 domain,
hydrolase; 1.24A {Pseudomonas aeruginosa} PDB: 4f0v_A
4f4m_A 4fge_A 4fgd_A 4fgi_A 4eob_A
Length = 188
Score = 25.2 bits (54), Expect = 3.2
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 43 SKNHHHHHSSGD 54
S +HHHHHSSG+
Sbjct: 3 SSHHHHHHSSGE 14
>2i71_A Hypothetical protein; structural genomics, APC6294, PSI-2,
protein structure initia midwest center for structural
genomics, MCSG; 1.70A {Sulfolobus solfataricus} SCOP:
e.72.1.1
Length = 400
Score = 25.2 bits (54), Expect = 3.2
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 43 SKNHHHHHSSGDLN 56
S +HHHHHSSG N
Sbjct: 3 SSHHHHHHSSGREN 16
>2vvw_A Protein A52, A52; IRAK2, TRAF6, BCL-2 family, immunomodulator,
NF-KB activation, viral protein, HOST-virus interaction;
1.9A {Vaccinia virus} PDB: 2vvx_A
Length = 162
Score = 25.1 bits (54), Expect = 3.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 32 FLRMRILKVKQSKNHHHHH 50
L+ R++ V+ SK+HHHHH
Sbjct: 144 ILQNRLVYVEMSKHHHHHH 162
>3stp_A Galactonate dehydratase, putative; PSI biology, structural
genomics, NEW YORK structural genomi research
consortium; 1.88A {Labrenzia aggregata iam 12614} PDB:
3sqs_A 3ssz_A
Length = 412
Score = 25.3 bits (56), Expect = 3.2
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 45 NHHHHHSSG 53
+HHHHHSSG
Sbjct: 2 HHHHHHSSG 10
>1q42_A MTR2, mRNA transport regulator MTR2; NTF2-fold, nuclear export,
translation; 1.75A {Candida albicans} SCOP: d.17.4.2
PDB: 1q40_A
Length = 201
Score = 25.2 bits (54), Expect = 3.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 43 SKNHHHHHSSGDLNSNGDQHSHKGKLLES 71
S +HHHHHSSG + + + LE
Sbjct: 3 SSHHHHHHSSGLVPRGSHMNQDPTQQLEP 31
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase
paralog, translation, lysyl- synthetase, lysyladenylate
analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A*
3g1z_A*
Length = 345
Score = 25.2 bits (56), Expect = 3.3
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>2qm3_A Predicted methyltransferase; putative methyltransferase,
structural genomics, pyrococcus PSI-2, protein
structure initiative; HET: MSE; 2.05A {Pyrococcus
furiosus dsm 3638}
Length = 373
Score = 25.0 bits (54), Expect = 3.3
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 45 NHHHHHSSG 53
+HHHHHSSG
Sbjct: 2 HHHHHHSSG 10
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein,
PII-like signaling protein, structural genomics,
NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Length = 119
Score = 24.8 bits (54), Expect = 3.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 43 SKNHHHHHSSGDLNSNGDQHSHKGKLLE 70
S +HHHHHSSG + KL+
Sbjct: 2 SSHHHHHHSSGLVPRGSHMDLVPLKLVT 29
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif,
alternative splicing, nuclear protein, phosphorylation,
repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1
PDB: 2jx2_A
Length = 121
Score = 24.7 bits (54), Expect = 3.4
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A
{Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 24.9 bits (55), Expect = 3.5
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>2jve_A PROD1; LY-6, three-finger snake toxin, UPAR, CD59, LIMB
regeneration; NMR {Notophthalmus viridescens}
Length = 91
Score = 24.7 bits (53), Expect = 3.5
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel,
lyase; 2.95A {Clostridium perfringens}
Length = 560
Score = 25.1 bits (54), Expect = 3.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 45 NHHHHHSSGDLNSNGDQHSHKGKLLESQH 73
+HHHHH S + D+H + +QH
Sbjct: 6 HHHHHHHSSGHIDDDDKHMKIPCSMMTQH 34
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type
glycosyltransferase, GT-81, mannosyl-3-phosphoglyc
synthase, GDP-mannose, transferas; 2.20A {Rubrobacter
xylanophilus} PDB: 3kia_A* 3o3p_A*
Length = 387
Score = 25.2 bits (54), Expect = 3.5
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 45 NHHHHHSSG 53
+HHHHHSSG
Sbjct: 2 HHHHHHSSG 10
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 25.1 bits (54), Expect = 3.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 45 NHHHHHSSGDLNSNGDQHSHKGKLLE 70
+HHHHHSSG N + +LE
Sbjct: 2 HHHHHHSSGRENLYFQGKERRRAVLE 27
>2vvy_A Protein B15, B14; IKK, IKK beta, BCL-2 family, early protein,
HOST-virus interaction, viral protein, immunomodulator,
NF-KB activation; 2.69A {Vaccinia virus}
Length = 169
Score = 24.7 bits (53), Expect = 3.6
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>4dzi_A Putative TIM-barrel metal-dependent hydrolase; amidohydrolase,
bimetal binding site, enzyme FUNC initiative, EFI; HET:
SO4; 1.60A {Mycobacterium avium subsp}
Length = 423
Score = 24.9 bits (54), Expect = 3.7
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 11/50 (22%)
Query: 14 KLLAEAQQMLADSKAKI------EFLRMRILK-----VKQSKNHHHHHSS 52
AE + KI + L +++ + +HHHHH S
Sbjct: 368 SFTAELKGFSESDIRKIMRDNALDLLGVQVGSAAAENLYFQSHHHHHHWS 417
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2iez_A*
Length = 217
Score = 25.0 bits (55), Expect = 3.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 43 SKNHHHHHSSGDLNSNGDQHSHKGKLL 69
S +HHHHHSSG + + + KLL
Sbjct: 3 SSHHHHHHSSGLVPRGSGDYDYLIKLL 29
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal
protein, nucleus, phosphoprotein, repressor, telomere;
HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Length = 168
Score = 24.7 bits (53), Expect = 3.8
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 5 LTSGGSRDKKLLAEAQQMLADSKAKIEFLRMRILKVKQSKNHHHHH 50
L S + L + + + F + L V + +HHHHH
Sbjct: 125 LKSNDQEQIRKL-VKKHGTGRMEMRKRFFE-KDLLVPRGSHHHHHH 168
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like,
structural genomics, PSI, protein structure initiative;
NMR {Nitrosomonas europaea}
Length = 107
Score = 24.4 bits (53), Expect = 3.9
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 45 NHHHHHSSGDLN 56
+HHHHHSSG N
Sbjct: 5 HHHHHHSSGREN 16
>1e1h_A BONT/A LC, botulinum neurotoxin type A light chain;
Zn-endopeptidase, complex, substrate bound, inhibitor
bound, hydrolase; 1.80A {Clostridium botulinum} SCOP:
d.92.1.7
Length = 287
Score = 24.8 bits (53), Expect = 3.9
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 45 NHHHHHSSGDLNSNGDQHSHKGKLLESQH 73
+HHHHHSSG + E QH
Sbjct: 2 HHHHHHSSGLVPRGSGMKETAAAKFERQH 30
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 24.9 bits (55), Expect = 3.9
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 45 NHHHHHSSG 53
+HHHHHSSG
Sbjct: 2 HHHHHHSSG 10
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE
protein structure initiative; 2.50A {Geobacter
metallireducens}
Length = 312
Score = 24.9 bits (55), Expect = 3.9
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 36 RILKVKQSKNHHHHH 50
+L+ + HHHHH
Sbjct: 297 TLLEQATGEGHHHHH 311
>3dlo_A Universal stress protein; unknown function, structural genomics,
PSI-2, protein struct initiative, midwest center for
structural genomics; HET: MSE; 1.97A {Archaeoglobus
fulgidus} PDB: 3qtb_A*
Length = 155
Score = 24.6 bits (54), Expect = 3.9
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 43 SKNHHHHHSSGDLN 56
S +HHHHHSSG N
Sbjct: 3 SSHHHHHHSSGREN 16
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural
genomics, singleton, predicted C region AF_0060; 2.10A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Length = 114
Score = 24.7 bits (53), Expect = 4.0
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 43 SKNHHHHHSSGDLN 56
S +HHHHHSSG N
Sbjct: 3 SSHHHHHHSSGREN 16
>2kku_A Uncharacterized protein; alpha/beta protein, structural genomics,
PSI-2, protein STRU initiative; NMR {Archaeoglobus
fulgidus}
Length = 161
Score = 24.8 bits (53), Expect = 4.0
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 43 SKNHHHHHSSGDLN 56
S +HHHHHSSG N
Sbjct: 3 SSHHHHHHSSGREN 16
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding,
DNA-binding nucleotide-binding, transcription,
transcription regulation; HET: CMP; 1.66A {Escherichia
coli}
Length = 260
Score = 24.6 bits (54), Expect = 4.1
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 45 NHHHHHSSGDLNSNGDQHSHKGKLLESQH 73
+HHHHHSSG + E QH
Sbjct: 2 HHHHHHSSGLVPRGSGMKETAAAKFERQH 30
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport,
rhesus protein, transpo protein; HET: BOG; 1.30A
{Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Length = 407
Score = 24.7 bits (54), Expect = 4.2
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 17 AEAQQMLADSKAKIEFLRMRI----LKVKQSKNHHHHH 50
+A++++ ++K +I+ L+ RI L K +HHHHH
Sbjct: 370 HKAERLVLEAKTEIQGLKNRIDAAVLSAKSEGHHHHHH 407
>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus
trimeric thermophilic probable
tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus
fumigatus AF293}
Length = 161
Score = 24.7 bits (53), Expect = 4.2
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 43 SKNHHHHHSSGDLN 56
S +HHHHHSSG N
Sbjct: 3 SSHHHHHHSSGREN 16
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger,
transferase, viral protein; HET: SAM; 2.00A {Sars
coronavirus}
Length = 344
Score = 24.7 bits (53), Expect = 4.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 45 NHHHHHSSGDLNSNGDQHSHKGKLLESQH 73
+HHHHHSSG + E QH
Sbjct: 2 HHHHHHSSGLVPRGSGMKETAAAKFERQH 30
>3tnl_A Shikimate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: NAD
SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Length = 315
Score = 24.9 bits (55), Expect = 4.3
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 46 HHHHHSSGDLNSNGDQHSHKGKLLESQHYRAI 77
HHHHH S ++ + + + ++ I
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSNAMTNKITERI 33
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis,
ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus
clavatus} PDB: 3k5h_A*
Length = 403
Score = 24.9 bits (55), Expect = 4.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 43 SKNHHHHHSSGDLNSNG 59
S +HHHHHSS +L G
Sbjct: 3 SSHHHHHHSSENLYFQG 19
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein;
protein structure initiative II(PSI II), nysgxrc; 1.90A
{Streptococcus thermophilus lmg 18311}
Length = 268
Score = 24.6 bits (54), Expect = 4.4
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 11/50 (22%)
Query: 12 DKKLLAEAQQMLADSKA-----KIE---F---LRMRILKVKQSKNHHHHH 50
DK L+ + Q KI F + +K K+ +HHHHH
Sbjct: 219 DKTLIKKINQGFETLYKNGEFQKISNKWFGEDVATDQVKGKREGHHHHHH 268
>3ess_A Cholix toxin; ADP-ribosyl transferase, domain III (C-terminal
catalytic domain), alpha-beta complex, transferase,
transferase,toxin; HET: 18N; 1.19A {Vibrio cholerae}
PDB: 2q6m_A* 3ki3_A* 3ki1_A* 3ki0_A* 3ki2_A* 3ki4_A*
3ki5_A* 3ki6_A* 3ki7_A* 3ny6_A*
Length = 230
Score = 24.8 bits (53), Expect = 4.4
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 43 SKNHHHHHSSGD 54
S +HHHHHSSG+
Sbjct: 3 SSHHHHHHSSGE 14
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 24.8 bits (53), Expect = 4.4
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 43 SKNHHHHHSSGDLNSNGDQHSHKGK 67
S +HHHHHSSG + S G
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGG 27
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 24.8 bits (53), Expect = 4.4
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 36 RILKVKQSKNHHHHH 50
RI + + ++HHHHH
Sbjct: 502 RISDLLKLEHHHHHH 516
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus}
SCOP: c.37.1.8
Length = 205
Score = 24.7 bits (54), Expect = 4.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 43 SKNHHHHHSSGDLNSNGDQHSHK 65
S +HHHHHSSG + ++
Sbjct: 3 SSHHHHHHSSGLVPRGSHMDPNQ 25
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha
barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio
vulnificus} PDB: 2plk_A*
Length = 419
Score = 24.9 bits (55), Expect = 4.5
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 45 NHHHHHSSGDLNSNGDQHSHKGKLLESQHYR 75
+HHHHH S L G +H + +
Sbjct: 4 SHHHHHHSSGLVPRGSHMAHSQSIFDIHSLT 34
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics,
PSI-2, protein structure initiative, midwest center for
structural genomics; 1.80A {Shigella flexneri} SCOP:
d.58.4.18
Length = 141
Score = 24.4 bits (53), Expect = 4.5
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 45 NHHHHHSSG 53
+HHHHHSSG
Sbjct: 2 HHHHHHSSG 10
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta
sheet; 2.23A {Saccharomyces cerevisiae}
Length = 200
Score = 24.7 bits (53), Expect = 4.5
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 35 MRILKVKQSKNHHHH 49
+LK +HHHH
Sbjct: 186 PLLLKPNLEHHHHHH 200
>1yfk_A Phosphoglycerate mutase 1; alpha/beta, isomerase, hydrolase; HET:
CIT; 2.70A {Homo sapiens} PDB: 1yjx_A*
Length = 262
Score = 24.4 bits (54), Expect = 4.6
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 39 KVKQSKNHHHHH 50
K K+ ++HHHHH
Sbjct: 251 KAKKLEHHHHHH 262
>3a16_A Oxdre, aldoxime dehydratase; beta barrel, heme protein, lyase;
HET: HEM; 1.60A {Rhodococcus erythropolis} PDB: 3a15_A*
3a17_A* 3a18_A*
Length = 373
Score = 24.6 bits (53), Expect = 4.7
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A
{Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A 1usy_E*
1usy_H*
Length = 219
Score = 24.5 bits (54), Expect = 4.9
Identities = 5/42 (11%), Positives = 15/42 (35%), Gaps = 11/42 (26%)
Query: 20 QQMLADSKAKIEFLRMRI---LKVKQSK--------NHHHHH 50
+ ++ ++ ++ ++ +HHHHH
Sbjct: 178 PVSYRTKREEVVSFLEKLQEVIEHDSNEQSRGEGGSHHHHHH 219
>3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962
aminopeptidase, hydrolase, manganese, metal-binding,
protea structural genomics; HET: PGE PG4; 1.80A
{Coxiella burnetii}
Length = 482
Score = 24.6 bits (54), Expect = 4.9
Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Query: 45 NHHHHHSSG-DLNSNG 59
+HHHHHSSG DL +
Sbjct: 2 HHHHHHSSGVDLGTEN 17
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside
hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Length = 437
Score = 24.7 bits (53), Expect = 4.9
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 43 SKNHHHHHSSGDLNSNGDQHSHKGKLLESQHYRAIV 78
S +HHHHHSSG + E YR I
Sbjct: 3 SSHHHHHHSSGLVPRGSHMARG-----EGGRYRVIH 33
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein,
unknown function; HET: EPE; 2.21A {Streptococcus
mutans}
Length = 240
Score = 24.5 bits (52), Expect = 4.9
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>2g0i_A Hypothetical protein SMU.848; 2-layer (alpha-beta)-sandwich,
unknown function; 1.85A {Streptococcus mutans} SCOP:
d.64.2.1 PDB: 2g0j_A
Length = 145
Score = 24.3 bits (52), Expect = 5.0
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 24.5 bits (53), Expect = 5.1
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 46 HHHHHSSGDLNSNGDQHSHKGKLLESQH 73
HHHHHSSG + E QH
Sbjct: 3 HHHHHSSGLVPRGSGMKETAAAKFERQH 30
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural
genomics, protein structure initiati
nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Length = 272
Score = 24.4 bits (54), Expect = 5.1
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 45 NHHHHHSSG-DLNSNGDQHSHK 65
+HHHHHSSG DL +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSM 23
>3ajv_A Putative uncharacterized protein; ENDA, archaea crenarch
hydrolase; 1.70A {Aeropyrum pernix} PDB: 3p1z_A
Length = 190
Score = 24.6 bits (53), Expect = 5.2
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>1tex_A STF0 sulfotransferase; sulfolipid, sulfation, TREH
trehalose-2-sulfate; HET: TRE; 2.60A {Mycobacterium
smegmatis} SCOP: c.37.1.5
Length = 287
Score = 24.5 bits (52), Expect = 5.2
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 24.5 bits (54), Expect = 5.2
Identities = 10/14 (71%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
Query: 45 NHHHHHSSG-DLNS 57
+HHHHHSSG DL +
Sbjct: 2 HHHHHHSSGVDLGT 15
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN;
2.30A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Length = 206
Score = 24.5 bits (53), Expect = 5.2
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase,
mixed alpha/ protein, N-terminal rossmann-fold like;
2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Length = 280
Score = 24.4 bits (54), Expect = 5.3
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 30 IEFLRMRILKVKQSKNHHHHH 50
+E++ + K+ + HHHHH
Sbjct: 259 VEYINASLSKLAAALEHHHHH 279
>3m8e_A Putative DNA-binding protein; winged helix-turn-helix, ARSR
family; 2.00A {Bacillus thuringiensis} PDB: 3m9a_A
3m8f_A
Length = 124
Score = 24.3 bits (52), Expect = 5.4
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A
{Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Length = 522
Score = 24.7 bits (53), Expect = 5.5
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom
center for structural genomics of infectious diseases,
CSGI; 1.80A {Vibrio cholerae}
Length = 441
Score = 24.4 bits (54), Expect = 5.5
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 46 HHHHHSSGDLNSNGDQHSHKGKLLESQHYR 75
HHHHH S ++ + + ++ +Y+
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSNAMDYFNYQ 31
>3lfm_A Protein FTO; FAT MASS and obesity associated (FTO) protein,
Fe2+/2-oxoGlu (2-OG)-dependent oxidative DNA/RNA
demethylases, oxidoreduc; HET: 3DT OGA; 2.50A {Homo
sapiens}
Length = 495
Score = 24.4 bits (52), Expect = 5.6
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A
{Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB:
2f9t_A*
Length = 271
Score = 24.3 bits (53), Expect = 5.6
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide,
sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Length = 217
Score = 24.4 bits (52), Expect = 5.6
Identities = 11/43 (25%), Positives = 15/43 (34%)
Query: 43 SKNHHHHHSSGDLNSNGDQHSHKGKLLESQHYRAIVFQGNSIM 85
S +HHHHHSSG + S + L +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASGRAALTHLLEAARDWHEALPEF 45
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase,
structural genomics, PSI- protein structure initiative;
HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Length = 362
Score = 24.5 bits (53), Expect = 5.7
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 43 SKNHHHHHSSGDLN 56
S +HHHHHSSG N
Sbjct: 3 SSHHHHHHSSGREN 16
>1kzf_A Acyl-homoserinelactone synthase ESAI; alpha-beta, autoinducer
synthase, quorum sensing, bacterial pathogenesis,
ligase; 1.80A {Pantoea stewartii subsp} SCOP: d.108.1.3
PDB: 1k4j_A
Length = 230
Score = 24.3 bits (52), Expect = 5.7
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 9/46 (19%)
Query: 43 SKNHHHHHSSGDLNSNG---------DQHSHKGKLLESQHYRAIVF 79
S +HHHHHSSG + + + E R F
Sbjct: 3 SSHHHHHHSSGLVPRGSHMLELFDVSYEELQTTRSEELYKLRKKTF 48
>3qrp_A Putative uncharacterized protein TTHB192; RAMP domain,
protein-RNA complex, RNA binding protein-RNA CO; HET:
PGP U5P; 2.35A {Thermus thermophilus HB8} PDB: 3qrq_A
3qrr_A*
Length = 267
Score = 24.4 bits (52), Expect = 5.7
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 45 NHHHHHSSGDLNSNGDQHSHKGKLLESQH 73
+HHHHHSSG + E QH
Sbjct: 2 HHHHHHSSGLVPRGSGMKETAAAKFERQH 30
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 24.4 bits (54), Expect = 5.9
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 45 NHHHHHSSG 53
+HHHHHSSG
Sbjct: 2 HHHHHHSSG 10
>2kv9_B Integrin beta-3; platelet glycoprotein IIIA, GPIIIA, C adhesion;
NMR {Homo sapiens}
Length = 75
Score = 23.8 bits (51), Expect = 5.9
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix,
TETR fold, structural genomics, PSI, prote structure
initiative; HET: MSE; 1.52A {Rhodococcus SP}
Length = 214
Score = 24.5 bits (53), Expect = 5.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 43 SKNHHHHHSSGDLNSNGDQH 62
S +HHHHHSSG N H
Sbjct: 3 SSHHHHHHSSGRENLYFQGH 22
>2k5h_A Conserved protein; structure, NESG, structural genomics, PSI-2,
protein structure initiative; NMR
{Methanothermobacterthermautotrophicus str}
Length = 101
Score = 24.0 bits (52), Expect = 5.9
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A
{Enterococcus faecalis}
Length = 418
Score = 24.3 bits (53), Expect = 6.1
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 5 LTSGGSRDKKLLAEAQQMLADSKAKIEFLRMRILKVKQSKNHHHHH 50
L+ + K L A + A + + + K+ + HHHHH
Sbjct: 374 LSKVKNPQKTLTDLADK--ATPREVKDPNSSSVDKLAAALEHHHHH 417
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 24.4 bits (54), Expect = 6.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 43 SKNHHHHHSSGDLNSN 58
S +HHHHHSSG +
Sbjct: 3 SSHHHHHHSSGLVPRG 18
>3jum_A Phenazine biosynthesis protein A/B; chirality, drug design,
medicinal CH inhibitor, biosynthetic protein; HET: AOD;
1.45A {Burkholderia SP} PDB: 3b4o_A* 3b4p_A* 3dzl_A*
3ex9_A 3cnm_A* 3jun_A* 3juo_A* 3jup_A* 3juq_A*
Length = 185
Score = 24.4 bits (52), Expect = 6.1
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>2kps_A Uncharacterized protein; beta strand, figure eight, figure 8,
structural genomics, PSI-2, protein structure
initiative; NMR {Desulfitobacterium hafniense Y51} PDB:
2l3u_A
Length = 98
Score = 23.7 bits (51), Expect = 6.2
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 38 LKVKQSKNHHHHH 50
K ++HHHHH
Sbjct: 86 AKEDPLEHHHHHH 98
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 24.5 bits (52), Expect = 6.2
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 10/34 (29%)
Query: 45 NHHHHHSSGDLNSNGDQHSHKGKLLESQHYRAIV 78
+HHHHHSSG N + +HY I+
Sbjct: 2 HHHHHHSSGRENL----------YFQGEHYDVII 25
>3mwc_A Mandelate racemase/muconate lactonizing protein; enolase,
structural genomics, protein structure initiative,
nysgrc; 1.80A {Kosmotoga olearia}
Length = 400
Score = 24.3 bits (53), Expect = 6.3
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 28 AKIEFLRMRILKVKQSKNHHHHH 50
+ +E L +I + ++ + HHHHH
Sbjct: 377 SHLEALGKKIWESQRGEGHHHHH 399
>3tu3_A EXOU chaperone, SPCU; type III secretion system, SPC infectious
diseases, structural genomics, center for struct
genomics of infectious diseases, csgid; 1.92A
{Pseudomonas aeruginosa} PDB: 4akx_A*
Length = 161
Score = 24.0 bits (51), Expect = 6.3
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 45 NHHHHHSSG 53
+HHHHHSSG
Sbjct: 2 HHHHHHSSG 10
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 24.1 bits (53), Expect = 6.4
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 45 NHHHHHSSG-DLNSNGDQHSHKGKLLESQHYRAIVFQGNSI 84
+HHHHHSSG DL G ++ + ++ S+ + + +
Sbjct: 2 HHHHHHSSGVDL---GTENLYFQSMM-SKWMQEWSTETVAP 38
>3fix_A N-acetyltransferase; termoplasma acidophilum, structural GEN
PSI-2, protein structure initiative, midwest center for
STR genomics, MCSG; 2.30A {Thermoplasma acidophilum}
PDB: 3f0a_A* 3k9u_A* 3ne7_A*
Length = 183
Score = 24.3 bits (53), Expect = 6.4
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 45 NHHHHHSSG 53
+HHHHHSSG
Sbjct: 2 HHHHHHSSG 10
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 358
Score = 24.2 bits (52), Expect = 6.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 44 KNHHHHHSSGDLNSN 58
+HHHHH S D NS+
Sbjct: 3 SSHHHHHHSQDPNSH 17
>3vpj_E TSE1-specific immunity protein; hydrolase-hydrolase inhibitor
complex; 2.50A {Pseudomonas aeruginosa} PDB: 4fgi_B
Length = 192
Score = 24.3 bits (52), Expect = 6.6
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>2c3f_A HYLP1, hyaluronidase, phage associated; lyase, hyaluronan lyase,
phage tail fibre, triple-stranded beta- helix, scarlet
fever; 1.81A {Streptococcus pyogenes} SCOP: b.108.1.5
PDB: 2yvv_A* 2yw0_A 2yx2_A 2pk1_A* 3eka_A* 2dp5_A
Length = 358
Score = 24.2 bits (51), Expect = 6.6
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase,
carbohydrate metabolism, stress response; HET: NAP ADP
BMA; 2.36A {Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 24.2 bits (53), Expect = 6.7
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 45 NHHHHHSSGDLNSNGDQHSHKGKLLESQH 73
+HHHHHSSG + E QH
Sbjct: 2 HHHHHHSSGLVPRGSGMKETAAAKFERQH 30
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 24.5 bits (52), Expect = 6.7
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding
site, enzyme function initiativ; 1.65A {Bacteroides
thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A
Length = 229
Score = 24.0 bits (52), Expect = 6.7
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
Query: 45 NHHHHHSSG-DLNSNGDQHSHKGKLLESQHYRAIVF 79
+HHHHHSSG DL G ++ + + ++S+ + ++
Sbjct: 2 HHHHHHSSGVDL---GTENLYF-QSMKSKGIKNLLI 33
>3syy_A Exonuclease; digest double stranded DNA, strict 5-3 polarity,
hydrolase; 1.90A {Laribacter hongkongensis} PDB: 3sz4_A*
3sz5_A
Length = 216
Score = 24.2 bits (51), Expect = 6.7
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 13 KKLLAEAQQMLADSKAKIEFLRMRILKVKQSKNHHHHH 50
++ E LA+ +A+IE+L+ + K+ + HHHHH
Sbjct: 178 AEIETEVSAFLAELEAEIEYLKRKAAKLAAALEHHHHH 215
>2jyl_A Capsid protein P24 (Ca); HIV-1, carboxy-terminal, dimerization
domain, CTD, 3D- NMR, capsid protein (Ca), double
mutant; NMR {Human immunodeficiency virus 1} PDB:
2k1c_A* 2l6e_A*
Length = 105
Score = 23.8 bits (51), Expect = 6.9
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate
synthase; 1.94A {Methylococcus capsulatus}
Length = 324
Score = 24.1 bits (53), Expect = 7.0
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 11/55 (20%)
Query: 9 GSRDK--KLLAEAQQMLADSKAKIEFLRM---RILKVKQSKN------HHHHHSS 52
G+++K ++ A + LA + + LR I++ + ++N HHHHH S
Sbjct: 264 GAKEKAEEMHEAALESLAGFGPEADLLRELARFIIQRQSAENLYFQSHHHHHHWS 318
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone;
HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A*
3vlf_A* 4a3v_A* 4a3t_A*
Length = 500
Score = 24.4 bits (52), Expect = 7.0
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2,
protein structure initiative, northeast ST genomics
consortium, NESG; NMR {Rhodopseudomonas palustris}
SCOP: b.173.1.1
Length = 87
Score = 23.6 bits (51), Expect = 7.0
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 43 SKNHHHHHSSGDLN 56
S +HHHHHSSG N
Sbjct: 3 SSHHHHHHSSGREN 16
>4f62_A Geranyltranstransferase; enzyme function initiative, structural
genomics; 2.10A {Marinomonas SP}
Length = 317
Score = 24.1 bits (53), Expect = 7.0
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 11/55 (20%)
Query: 9 GSRDK--KLLAEAQQMLADSKAKIEFLRM---RILKVKQSKN------HHHHHSS 52
G++ +L +A +++ K + L I+ ++N HHHHH S
Sbjct: 257 GAKALVVRLHEQAIAQISEFGDKSQPLTDLANYIIDRNHAENLYFQSHHHHHHWS 311
>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein,
DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase;
HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A*
2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A
Length = 474
Score = 24.2 bits (53), Expect = 7.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 42 QSKNHHHHHSSGD 54
+HHHHH SGD
Sbjct: 462 DKHHHHHHHHSGD 474
>2aby_A Hypothetical protein TA0743; helix-turn-helix, unknown function;
NMR {Thermoplasma acidophilum}
Length = 146
Score = 24.0 bits (51), Expect = 7.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 43 SKNHHHHHSSGDLNSNGDQHSHKG 66
+ +HHHHHSSG N H KG
Sbjct: 3 TSHHHHHHSSGRENLYFQSHMQKG 26
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo
sapiens}
Length = 224
Score = 24.0 bits (52), Expect = 7.3
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 46 HHHHHSSGDLNSNGDQHSHKGKLLESQHYRAIVF 79
HHHHH S ++ + + Q Y +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMSFPPQRYHYFLV 35
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase,
ATP-binding, cell shape, cell W biogenesis/degradation,
magnesium, manganese; 2.23A {Streptococcus mutans}
Length = 383
Score = 24.1 bits (53), Expect = 7.5
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 43 SKNHHHHHSSGDLNSNGDQHSHKG--KLLESQHYR---AIVFQGNS 83
S +HHHHHSSG + S G ++ + +++ G S
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMSKETLVLLYGGRS 48
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP:
c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Length = 190
Score = 24.0 bits (52), Expect = 7.5
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 17 AEAQQMLADSKAKIEFLRMRILKVKQSKNHHHHH 50
+AQ +AD AK L+ ++ ++HHHHH
Sbjct: 160 RDAQPFIADWMAK--QLQ-PLVNHDSLEHHHHHH 190
>3nj2_A DUF269-containing protein; cyanobacteria, circadium rhythms,
nitrogen fixation, unknown; 1.59A {Cyanothece SP}
Length = 174
Score = 24.1 bits (52), Expect = 7.6
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>3tai_A DNA double-strand break repair protein NURA; recombination,
hydrolase; HET: DNA; 2.82A {Pyrococcus furiosus} PDB:
3tal_A* 3taz_A*
Length = 471
Score = 24.2 bits (51), Expect = 7.6
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.30A {Streptococcus mutans}
Length = 192
Score = 23.9 bits (52), Expect = 7.8
Identities = 5/11 (45%), Positives = 9/11 (81%)
Query: 40 VKQSKNHHHHH 50
++ ++HHHHH
Sbjct: 182 IENLEHHHHHH 192
>3vpi_A Type VI secretion exported 1; hydrolase; HET: MSE; 1.50A
{Pseudomonas aeruginosa} PDB: 3vpj_A
Length = 174
Score = 24.0 bits (51), Expect = 7.8
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Mycobacterium tuberculosis}
Length = 434
Score = 24.0 bits (53), Expect = 7.9
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 43 SKNHHHHHSSGDLNSNGDQHSHKGK 67
S +HHHHHSSG + + K
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVTGKAF 27
>2ia1_A BH3703 protein; unknown function, structural genomics, PSI, protein
structur initiative; 1.59A {Bacillus halodurans} SCOP:
d.359.1.1 PDB: 3i0t_A
Length = 178
Score = 23.8 bits (51), Expect = 8.1
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 11 RDKKLLAEAQQMLADSKAKIEFLRMRILKVKQSKNHHHH 49
D + L + + + LK ++ +HHHH
Sbjct: 140 EDSFYKETLNEYLEEKAQGKRYPFLEPLKEEEGHHHHHH 178
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat
repeat, transcription factor, nucleus; 2.85A
{Saccharomyces cerevisiae}
Length = 649
Score = 24.1 bits (51), Expect = 8.2
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>2i39_A Protein N1, N1L protein; all alpha, viral protein; 2.20A
{Vaccinia virus} PDB: 2uxe_A
Length = 137
Score = 23.9 bits (51), Expect = 8.2
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal
transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A
3ow7_A 3h9i_A 3h94_A 3h9t_B
Length = 413
Score = 24.0 bits (52), Expect = 8.2
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 21 QMLADSKAKIEFLRMRILKVKQSKNHHHHHS 51
L DS+A I R+ + HHHHH
Sbjct: 382 LFLIDSEANISGALERMRSESATHAHHHHHH 412
>2i6h_A AGR_C_189P, hypothetical protein ATU0120; structural genomics,
APC5905, PSI-2; 1.75A {Agrobacterium tumefaciens str}
SCOP: a.118.8.5
Length = 207
Score = 23.9 bits (51), Expect = 8.3
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 43 SKNHHHHHSSGDLNS 57
S +HHHHHSSG N
Sbjct: 3 SSHHHHHHSSGRENL 17
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 23.7 bits (52), Expect = 8.3
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 45 NHHHHHSSGDLNSNGDQHSHKGK 67
+HHHHHSSG + + +
Sbjct: 1 HHHHHHSSGLVPRGSHMATQDSE 23
>2vxr_A Botulinum neurotoxin type G; hydrolase, ganglioside, protease,
recepto secreted, binding domain, metalloprotease;
1.90A {Clostridium botulinum} PDB: 3mpp_G
Length = 482
Score = 24.1 bits (51), Expect = 8.5
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 43 SKNHHHHHSSGDL--NSNGDQHSHKGKL 68
S +HHHHHSSG + S+ D H G
Sbjct: 3 SSHHHHHHSSGLVPRGSHMDYKDHDGDY 30
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase,
phosphoryl transfer, transferase; 1.53A {Streptomyces
wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A*
3qvf_A* 3qvh_A*
Length = 286
Score = 23.8 bits (51), Expect = 8.6
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 43 SKNHHHHHSSGDL 55
S +HHHHHSSG +
Sbjct: 3 SSHHHHHHSSGLV 15
>3v3w_A Starvation sensing protein RSPA; enolase, enzyme function
initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio
japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A*
3ow1_A 3pk7_A* 3rgt_A* 3bsm_A
Length = 424
Score = 23.7 bits (52), Expect = 8.6
Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Query: 45 NHHHHHSSG-DLNSNG 59
+HHHHHSSG DL +
Sbjct: 2 HHHHHHSSGVDLGTEN 17
>2p4s_A Purine nucleoside phosphorylase; transferase; HET: DIH; 2.20A
{Anopheles gambiae}
Length = 373
Score = 23.9 bits (52), Expect = 8.6
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium
tumefac C58, structural genomics, PSI-2; HET: MSE;
1.80A {Agrobacterium tumefaciens str}
Length = 332
Score = 23.7 bits (52), Expect = 8.8
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein;
structural genomics, PSI-biology; 2.90A {Roseiflexus
SP}
Length = 393
Score = 23.8 bits (52), Expect = 8.9
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 45 NHHHHHSSG 53
+HHHHHSSG
Sbjct: 2 HHHHHHSSG 10
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A
{Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A*
3plr_A*
Length = 432
Score = 23.7 bits (52), Expect = 8.9
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>3fbg_A Putative arginate lyase; structural genomics, unknown function,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus haemolyticus}
Length = 346
Score = 23.7 bits (52), Expect = 9.0
Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 8/36 (22%)
Query: 16 LAEAQQMLADSKA--KIEFLRMRILKVKQSKNHHHH 49
+ +A Q+L + K+ ++ + + +HHHH
Sbjct: 317 IYQAHQILESNTMIGKL------VINLNEGHHHHHH 346
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Janibacter SP}
Length = 200
Score = 23.9 bits (51), Expect = 9.0
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 45 NHHHHHSSG-DLNSNGDQHSHKGKLLESQHYRAIVFQGNS 83
+HHHHHSSG DL + ++ + R +V G S
Sbjct: 2 HHHHHHSSGVDLGTENLYFQS---MMTGEPTRHVVVMGVS 38
>3ke4_A Hypothetical cytosolic protein; helix bundle, transferase; 1.90A
{Bacillus cereus} PDB: 3ke5_A*
Length = 213
Score = 23.8 bits (52), Expect = 9.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 43 SKNHHHHHSSGDLNSN 58
S +HHHHHSSG + +
Sbjct: 3 SSHHHHHHSSGLVPAG 18
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 23.7 bits (52), Expect = 9.0
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 9/36 (25%)
Query: 43 SKNHHHHHSSGDLNSNGDQHSHKGKLLESQHYRAIV 78
S +HHHHHSSG + + Q A V
Sbjct: 3 SSHHHHHHSSGLVPRG-------SHMSRPQT--AFV 29
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella
flexneri} PDB: 2xxs_A
Length = 146
Score = 23.5 bits (50), Expect = 9.1
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 43 SKNHHHHHSSG 53
S +HHHHHSSG
Sbjct: 3 SSHHHHHHSSG 13
>2in5_A Hypothetical lipoprotein YMCC; mostly beta protein, structural
genomics, PSI-2, protein structure initiative; 2.30A
{Escherichia coli K12} SCOP: b.177.1.1
Length = 207
Score = 23.6 bits (50), Expect = 9.2
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 29 KIEFLRMRILKVKQSKNHHHHH 50
+ + M LK ++HHHHH
Sbjct: 186 GVIPVEMTFLKPAPLEHHHHHH 207
>2vty_A Protein F1, F1L; BCL-2, apoptosis; 2.10A {Vaccinia virus}
Length = 182
Score = 23.6 bits (50), Expect = 9.3
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Query: 45 NHHHHHSSG-------DLNSNGDQHSHKGKLLESQHYR 75
+HHHHH S D SN H + L E+ YR
Sbjct: 3 SHHHHHHSQDPVQDIEDEASNNVDHDYVYPLPENMVYR 40
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 23.7 bits (52), Expect = 9.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 43 SKNHHHHHSSGDLNSNGDQ 61
S +HHHHHSSG + +
Sbjct: 3 SSHHHHHHSSGLVPRGSPR 21
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 23.9 bits (52), Expect = 9.3
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 10 SRDKKLLAEAQQMLADSKAKIEFLRMRILKVKQSKNHHHHH 50
+ KK +++ A +E R++ ++V + HHHHH
Sbjct: 482 KKQKKQHEGSKKKAAARDVTLE-NRLQNMEVTDALEHHHHH 521
>2q1f_A Chondroitinase; alpha plus beta, lyase; 2.85A {Bacteroides
thetaiotaomicron}
Length = 1022
Score = 24.0 bits (51), Expect = 9.4
Identities = 5/13 (38%), Positives = 12/13 (92%)
Query: 38 LKVKQSKNHHHHH 50
+++++ ++HHHHH
Sbjct: 1010 VELEKLEHHHHHH 1022
>2gjv_A Putative cytoplasmic protein; structural genomics, unknown
function, PSI, protein structur initiative; 2.39A
{Salmonella typhimurium} SCOP: d.323.1.2
Length = 175
Score = 23.6 bits (50), Expect = 9.5
Identities = 8/9 (88%), Positives = 9/9 (100%)
Query: 45 NHHHHHSSG 53
+HHHHHSSG
Sbjct: 2 HHHHHHSSG 10
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 23.6 bits (52), Expect = 9.5
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 14 KLLAEAQQMLADSKAKIEFLRMRILKVKQSKNHHHHH 50
L + ++ S ++ + ++ +HHHHH
Sbjct: 290 NLNEKEKEQFLHSAGVLKNILKPHFAEQKVNHHHHHH 326
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA,
nucleotide-binding, RNA-binding; 2.37A {Thermotoga
maritima} PDB: 3h37_A 3h39_A* 3h3a_A*
Length = 441
Score = 23.9 bits (52), Expect = 9.5
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 23 LADSKAKIEFLRMRIL---KVKQSKNHHHHH 50
D + +E + + K+ + HHHHH
Sbjct: 410 TRDEEEILEEVLASLETEGKLAAALEHHHHH 440
>1ztm_A Fusion glycoprotein; fusion protein, 6-helix bundle,trimer,
post-fusion, viral PR; HET: NAG; 3.05A {Human
parainfluenza virus 3}
Length = 490
Score = 23.9 bits (51), Expect = 9.7
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 10 SRDKKLLAEAQQMLADSKAKIEFLRMRILKVKQSKNHHHHH 50
K+ + + Q L + V + +HHHHH
Sbjct: 450 EESKEWIRRSNQKLDSIGNWHQSSTTGGPLVPRGSHHHHHH 490
>2l82_A Designed protein OR32; structural genomics, northeast structural
genomics consortiu PSI-biology, protein structure
initiative, de novo protein; NMR {Artificial gene}
Length = 162
Score = 23.6 bits (50), Expect = 9.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 21 QMLADSKAKIEFLRMRILKVKQSKNHHHHH 50
+ ++D + IE +R + KV ++HHHHH
Sbjct: 133 RTVSDKEELIEQVRRFVRKVGSLEHHHHHH 162
>2r5x_A Protein YUGN, uncharacterized conserved protein; structural
genomics, unknown function, PSI-2, protein struct
initiative; 2.04A {Geobacillus kaustophilus}
Length = 129
Score = 23.4 bits (50), Expect = 9.9
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 20 QQMLADSKAKIEFLRMRILKVKQSKNHHHHH 50
+++ + + ++ + K+K+ +HHHHH
Sbjct: 99 SSLVSQCQNVLAQVKSELEKIKEEGHHHHHH 129
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.127 0.353
Gapped
Lambda K H
0.267 0.0581 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,305,226
Number of extensions: 68601
Number of successful extensions: 2528
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2390
Number of HSP's successfully gapped: 431
Length of query: 86
Length of database: 6,701,793
Length adjustment: 54
Effective length of query: 32
Effective length of database: 5,194,059
Effective search space: 166209888
Effective search space used: 166209888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)