RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1652
         (86 letters)



>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 81

 Score = 46.7 bits (111), Expect = 4e-09
 Identities = 21/43 (48%), Positives = 33/43 (76%)

Query: 1  MIQSLTSGGSRDKKLLAEAQQMLADSKAKIEFLRMRILKVKQS 43
          MIQ+ ++G ++D+KLL  AQQML DSK KI+ +RM++ +  Q+
Sbjct: 30 MIQTYSNGSTKDRKLLLTAQQMLQDSKTKIDIIRMQLRRALQA 72


>d1xpna_ b.3.7.1 (A:) Hypothetical protein PA1324 {Pseudomonas
          aeruginosa [TaxId: 287]}
          Length = 170

 Score = 25.3 bits (55), Expect = 1.0
 Identities = 9/11 (81%), Positives = 10/11 (90%)

Query: 43 SKNHHHHHSSG 53
          S +HHHHHSSG
Sbjct: 2  SSHHHHHHSSG 12


>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 260

 Score = 24.8 bits (52), Expect = 1.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)

Query: 36  RILKVKQSKNHHHHH 50
           R++K+   ++HHHHH
Sbjct: 246 RVVKLTSLEHHHHHH 260


>d1yaro1 a.24.8.1 (O:4-231) Proteasome activator protein PA26
           {Trypanosoma brucei [TaxId: 5691]}
          Length = 228

 Score = 24.6 bits (53), Expect = 1.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 6   TSGGSRDKKLLAEAQQMLADSKAKIEFLRMRI 37
           T GGS+   LL E +Q+ AD   K+E     +
Sbjct: 167 TKGGSQSPSLLLELRQIDADFMLKVELATTHL 198


>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea
          (Pisum sativum) [TaxId: 3888]}
          Length = 151

 Score = 24.2 bits (52), Expect = 2.1
 Identities = 7/54 (12%), Positives = 19/54 (35%)

Query: 13 KKLLAEAQQMLADSKAKIEFLRMRILKVKQSKNHHHHHSSGDLNSNGDQHSHKG 66
          + L++E          K+  +++ I   + ++ H+H        +        G
Sbjct: 17 RGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGLCDFLSSG 70


>d1sska_ b.148.1.1 (A:) Nucleocapsid protein {SARS coronavirus,
          (SARS-CoV) [TaxId: 227859]}
          Length = 158

 Score = 24.1 bits (52), Expect = 2.2
 Identities = 9/11 (81%), Positives = 10/11 (90%)

Query: 43 SKNHHHHHSSG 53
          S +HHHHHSSG
Sbjct: 3  SSHHHHHHSSG 13


>d1rlha_ d.256.1.1 (A:) Hypothetical protein Ta1353 {Archaeon
          Thermoplasma acidophilum [TaxId: 2303]}
          Length = 151

 Score = 23.9 bits (52), Expect = 3.0
 Identities = 8/9 (88%), Positives = 9/9 (100%)

Query: 45 NHHHHHSSG 53
          +HHHHHSSG
Sbjct: 1  HHHHHHSSG 9


>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
          {Dictyostelium discoideum [TaxId: 44689]}
          Length = 150

 Score = 23.8 bits (51), Expect = 3.3
 Identities = 8/74 (10%), Positives = 20/74 (27%)

Query: 13 KKLLAEAQQMLADSKAKIEFLRMRILKVKQSKNHHHHHSSGDLNSNGDQHSHKGKLLESQ 72
          + L+ E           +  L+  +     +++H+  H               G ++   
Sbjct: 17 RGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMV 76

Query: 73 HYRAIVFQGNSIMH 86
               V     +M 
Sbjct: 77 FEGKGVVASARLMI 90


>d1vk9a_ c.97.1.3 (A:) Hypothetical protein TM1506 {Thermotoga
          maritima [TaxId: 2336]}
          Length = 147

 Score = 23.2 bits (50), Expect = 5.1
 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 6/42 (14%)

Query: 45 NHHHHHSSGDLNSNGDQHSHKGKLLESQHYRAIVFQGNSIMH 86
          +HHHHH   +L  +        K+ E +    + + G SI  
Sbjct: 6  HHHHHHVEKNLLRSAL------KIFEKKDLSLLAYSGRSIFE 41


>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein
           {Bacteroides fragilis [TaxId: 817]}
          Length = 161

 Score = 22.7 bits (48), Expect = 8.4
 Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 2/21 (9%)

Query: 32  FLRMRILK--VKQSKNHHHHH 50
                +LK  ++   +HHHHH
Sbjct: 141 ISATVVLKRLLENLPHHHHHH 161


>d1lp1a_ a.8.1.1 (A:) Immunoglobulin-binding protein A modules
          {Staphylococcus aureus [TaxId: 1280]}
          Length = 55

 Score = 21.5 bits (45), Expect = 9.0
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 2  IQSLTSGGSRDKKLLAEAQQMLADSKA 28
          I SL    S+   LLAEA++ L D++A
Sbjct: 28 IFSLWDDPSQSANLLAEAKK-LNDAQA 53


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.127    0.353 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 297,001
Number of extensions: 10647
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 26
Length of query: 86
Length of database: 2,407,596
Length adjustment: 51
Effective length of query: 35
Effective length of database: 1,707,366
Effective search space: 59757810
Effective search space used: 59757810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)