BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16520
(353 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
pdb|1OLS|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1OLX|A Chain A, Roles Of His291-alpha And His146-beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-chain
Alpha-ketoacid Dehydrogenase
pdb|1U5B|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1WCI|A Chain A, Reactivity Modulation Of Human Branched-chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEU|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEV|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEW|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 143/375 (38%), Positives = 190/375 (50%), Gaps = 101/375 (26%)
Query: 31 NVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVY 90
++ E +++YK+M LN MD+++YESQRQGRISFYMT+ GEEG+HVGSAAALD DLV+
Sbjct: 51 HLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVF 110
Query: 91 AQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQ 150
QYRE GVLM+R + +E + Q YGNI KG+QMPVHYG ++ HFVTISSPLATQ+PQ
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 151 AVGSAYAYKLKKNEKVVIVYFGEGAA-----------IVTMATPFQPQRRNSMEEMGS-- 197
AVG+AYA K +VVI YFGEGAA T+ P RN+ + +
Sbjct: 171 AVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPT 230
Query: 198 ----RPEGLAW----------------VF-----------------QPLELTETT--IGH 218
R +G+A VF QP + T IGH
Sbjct: 231 SEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGH 290
Query: 219 HSTSDDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEEQDEQIGHHSTSDDSTAYR 278
HSTSDDS+AYRS EV ++ ++PI W EEQ++
Sbjct: 291 HSTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEK--------------- 335
Query: 279 SKSEVQEYEINNNPIXXXXXXXXXXXXWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWK 338
W +K+S++ V+ + +E+K KP+
Sbjct: 336 --------------------------AW--------RKQSRRKVMEAFEQAERKPKPNPN 361
Query: 339 EMFEDVYHEMPPHIR 353
+F DVY EMP +R
Sbjct: 362 LLFSDVYQEMPAQLR 376
>pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/375 (38%), Positives = 190/375 (50%), Gaps = 101/375 (26%)
Query: 31 NVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVY 90
++ E +++YK+M LN MD+++YESQRQGRISFYMT+ GEEG+HVGSAAALD DLV+
Sbjct: 51 HLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVF 110
Query: 91 AQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQ 150
QYRE GVLM+R + +E + Q YGNI KG+QMPVHYG ++ HFVTISSPLATQ+PQ
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 151 AVGSAYAYKLKKNEKVVIVYFGEGAA-----------IVTMATPFQPQRRNSMEEMGS-- 197
AVG+AYA K +VVI YFGEGAA T+ P RN+ + +
Sbjct: 171 AVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPT 230
Query: 198 ----RPEGLAW----------------VF-----------------QPLELTETT--IGH 218
R +G+A VF QP + T IGH
Sbjct: 231 SEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGH 290
Query: 219 HSTSDDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEEQDEQIGHHSTSDDSTAYR 278
HSTSDDS+AYRS EV ++ ++PI W EEQ++
Sbjct: 291 HSTSDDSSAYRSVDEVGYWDKQDHPISRLRHYLLSQGWWDEEQEK--------------- 335
Query: 279 SKSEVQEYEINNNPIXXXXXXXXXXXXWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWK 338
W +K+S++ V+ + +E+K KP+
Sbjct: 336 --------------------------AW--------RKQSRRKVMEAFEQAERKPKPNPN 361
Query: 339 EMFEDVYHEMPPHIR 353
+F DVY EMP +R
Sbjct: 362 LLFSDVYQEMPAQLR 376
>pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 221 bits (564), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 142/371 (38%), Positives = 188/371 (50%), Gaps = 101/371 (27%)
Query: 35 ETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVYAQYR 94
E +++YK+M LN MD+++YESQRQGRISFYMT+ GEEG+HVGSAAALD DLV+ QYR
Sbjct: 55 EKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYR 114
Query: 95 ETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGS 154
E GVLM+R + +E + Q YGNI KG+QMPVHYG ++ HFVTISSPLATQ+PQAVG+
Sbjct: 115 EAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGA 174
Query: 155 AYAYKLKKNEKVVIVYFGEGAA-----------IVTMATPFQPQRRNSMEEMGS------ 197
AYA K +VVI YFGEGAA T+ P RN+ + +
Sbjct: 175 AYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQY 234
Query: 198 RPEGLAW----------------VF-----------------QPLELTETT--IGHHSTS 222
R +G+A VF QP + T IGHH+TS
Sbjct: 235 RGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHNTS 294
Query: 223 DDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEEQDEQIGHHSTSDDSTAYRSKSE 282
DDS+AYRS EV ++ ++PI W EEQ++
Sbjct: 295 DDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEK------------------- 335
Query: 283 VQEYEINNNPIXXXXXXXXXXXXWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWKEMFE 342
W +K+S++ V+ + +E+K KP+ +F
Sbjct: 336 ----------------------AW--------RKQSRRKVMEAFEQAERKPKPNPNLLFS 365
Query: 343 DVYHEMPPHIR 353
DVY EMP +R
Sbjct: 366 DVYQEMPAQLR 376
>pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 221 bits (563), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 142/371 (38%), Positives = 187/371 (50%), Gaps = 101/371 (27%)
Query: 35 ETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVYAQYR 94
E +++YK+M LN MD+++YESQRQGRISFYMT+ GEEG+HVGSAAALD DLV+ QYR
Sbjct: 55 EKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYR 114
Query: 95 ETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGS 154
E GVLM+R + +E + Q YGNI KG+QMPVHYG ++ HFVTISSPLATQ+PQAVG+
Sbjct: 115 EAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGA 174
Query: 155 AYAYKLKKNEKVVIVYFGEGAA-----------IVTMATPFQPQRRNSMEEMGS------ 197
AYA K +VVI YFGEGAA T+ P RN+ + +
Sbjct: 175 AYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQY 234
Query: 198 RPEGLAW----------------VF-----------------QPLELTETT--IGHHSTS 222
R +G+A VF QP + T IGHH TS
Sbjct: 235 RGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHDTS 294
Query: 223 DDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEEQDEQIGHHSTSDDSTAYRSKSE 282
DDS+AYRS EV ++ ++PI W EEQ++
Sbjct: 295 DDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEK------------------- 335
Query: 283 VQEYEINNNPIXXXXXXXXXXXXWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWKEMFE 342
W +K+S++ V+ + +E+K KP+ +F
Sbjct: 336 ----------------------AW--------RKQSRRKVMEAFEQAERKPKPNPNLLFS 365
Query: 343 DVYHEMPPHIR 353
DVY EMP +R
Sbjct: 366 DVYQEMPAQLR 376
>pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 221 bits (563), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 142/375 (37%), Positives = 189/375 (50%), Gaps = 101/375 (26%)
Query: 31 NVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVY 90
++ E +++YK+M LN MD+++YESQRQGRISFYMT+ GEEG+HVGSAAALD DLV+
Sbjct: 51 HLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVF 110
Query: 91 AQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQ 150
QYRE GVLM+R + +E + Q YGNI KG+QMPVHYG ++ HFVTISSPLATQ+PQ
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 151 AVGSAYAYKLKKNEKVVIVYFGEGAA-----------IVTMATPFQPQRRNSMEEMGS-- 197
AVG+AYA K +VVI YFGEGAA T+ P RN+ + +
Sbjct: 171 AVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPT 230
Query: 198 ----RPEGLAW----------------VF-----------------QPLELTETT--IGH 218
R +G+A VF QP + T IGH
Sbjct: 231 SEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGH 290
Query: 219 HSTSDDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEEQDEQIGHHSTSDDSTAYR 278
H TSDDS+AYRS EV ++ ++PI W EEQ++
Sbjct: 291 HQTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEK--------------- 335
Query: 279 SKSEVQEYEINNNPIXXXXXXXXXXXXWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWK 338
W +K+S++ V+ + +E+K KP+
Sbjct: 336 --------------------------AW--------RKQSRRKVMEAFEQAERKPKPNPN 361
Query: 339 EMFEDVYHEMPPHIR 353
+F DVY EMP +R
Sbjct: 362 LLFSDVYQEMPAQLR 376
>pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 221 bits (563), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 142/375 (37%), Positives = 189/375 (50%), Gaps = 101/375 (26%)
Query: 31 NVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVY 90
++ E +++YK+M LN MD+++YESQRQGRISFYMT+ GEEG+HVGSAAALD DLV+
Sbjct: 51 HLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVF 110
Query: 91 AQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQ 150
QYRE GVLM+R + +E + Q YGNI KG+QMPVHYG ++ HFVTISSPLATQ+PQ
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 151 AVGSAYAYKLKKNEKVVIVYFGEGAA-----------IVTMATPFQPQRRNSMEEMGS-- 197
AVG+AYA K +VVI YFGEGAA T+ P RN+ + +
Sbjct: 171 AVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPT 230
Query: 198 ----RPEGLAW----------------VF-----------------QPLELTETT--IGH 218
R +G+A VF QP + T IGH
Sbjct: 231 SEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGH 290
Query: 219 HSTSDDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEEQDEQIGHHSTSDDSTAYR 278
H TSDDS+AYRS EV ++ ++PI W EEQ++
Sbjct: 291 HXTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEK--------------- 335
Query: 279 SKSEVQEYEINNNPIXXXXXXXXXXXXWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWK 338
W +K+S++ V+ + +E+K KP+
Sbjct: 336 --------------------------AW--------RKQSRRKVMEAFEQAERKPKPNPN 361
Query: 339 EMFEDVYHEMPPHIR 353
+F DVY EMP +R
Sbjct: 362 LLFSDVYQEMPAQLR 376
>pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
pdb|2J9F|C Chain C, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
Length = 400
Score = 221 bits (563), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 142/375 (37%), Positives = 189/375 (50%), Gaps = 101/375 (26%)
Query: 31 NVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVY 90
++ E +++YK+M LN MD+++YESQRQGRISFYMT+ GEEG+HVGSAAALD DLV+
Sbjct: 51 HLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVF 110
Query: 91 AQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQ 150
QYRE GVLM+R + +E + Q YGNI KG+QMPVHYG ++ HFVTISSPLATQ+PQ
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 151 AVGSAYAYKLKKNEKVVIVYFGEGAA-----------IVTMATPFQPQRRNSMEEMGS-- 197
AVG+AYA K +VVI YFGEGAA T+ P RN+ + +
Sbjct: 171 AVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPT 230
Query: 198 ----RPEGLAW----------------VF-----------------QPLELTETT--IGH 218
R +G+A VF QP + T IGH
Sbjct: 231 SEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGH 290
Query: 219 HSTSDDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEEQDEQIGHHSTSDDSTAYR 278
HSTSDDS+AYR EV ++ ++PI W EEQ++
Sbjct: 291 HSTSDDSSAYRPVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEK--------------- 335
Query: 279 SKSEVQEYEINNNPIXXXXXXXXXXXXWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWK 338
W +K+S++ V+ + +E+K KP+
Sbjct: 336 --------------------------AW--------RKQSRRKVMEAFEQAERKPKPNPN 361
Query: 339 EMFEDVYHEMPPHIR 353
+F DVY EMP +R
Sbjct: 362 LLFSDVYQEMPAQLR 376
>pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 221 bits (562), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 142/375 (37%), Positives = 189/375 (50%), Gaps = 101/375 (26%)
Query: 31 NVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVY 90
++ E +++YK+M LN MD+++YESQRQGRISFYMT+ GEEG+HVGSAAALD DLV+
Sbjct: 51 HLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVF 110
Query: 91 AQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQ 150
QYRE GVLM+R + +E + Q YGNI KG+QMPVHYG ++ HFVTISSPLATQ+PQ
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 151 AVGSAYAYKLKKNEKVVIVYFGEGAA-----------IVTMATPFQPQRRNSMEEMGS-- 197
AVG+AYA K +VVI YFGEGAA T+ P RN+ + +
Sbjct: 171 AVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPT 230
Query: 198 ----RPEGLAW----------------VF-----------------QPLELTETT--IGH 218
R +G+A VF QP + T IGH
Sbjct: 231 SEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGH 290
Query: 219 HSTSDDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEEQDEQIGHHSTSDDSTAYR 278
H TSDDS+AYRS EV ++ ++PI W EEQ++
Sbjct: 291 HETSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEK--------------- 335
Query: 279 SKSEVQEYEINNNPIXXXXXXXXXXXXWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWK 338
W +K+S++ V+ + +E+K KP+
Sbjct: 336 --------------------------AW--------RKQSRRKVMEAFEQAERKPKPNPN 361
Query: 339 EMFEDVYHEMPPHIR 353
+F DVY EMP +R
Sbjct: 362 LLFSDVYQEMPAQLR 376
>pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 142/375 (37%), Positives = 189/375 (50%), Gaps = 101/375 (26%)
Query: 31 NVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVY 90
++ E +++YK+M LN MD+++YESQRQGRISFYMT+ GEEG+HVGSAAALD DLV+
Sbjct: 51 HLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVF 110
Query: 91 AQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQ 150
QYRE GVLM+R + +E + Q YGNI KG+QMPVHYG ++ HFVTISSPLATQ+PQ
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 151 AVGSAYAYKLKKNEKVVIVYFGEGAA-----------IVTMATPFQPQRRNSMEEMGS-- 197
AVG+AYA K +VVI YFGEGAA T+ P RN+ + +
Sbjct: 171 AVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPT 230
Query: 198 ----RPEGLAW----------------VF-----------------QPLELTETT--IGH 218
R +G+A VF QP + T IGH
Sbjct: 231 SEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYAIGH 290
Query: 219 HSTSDDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEEQDEQIGHHSTSDDSTAYR 278
STSDDS+AYRS EV ++ ++PI W EEQ++
Sbjct: 291 ASTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEK--------------- 335
Query: 279 SKSEVQEYEINNNPIXXXXXXXXXXXXWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWK 338
W +K+S++ V+ + +E+K KP+
Sbjct: 336 --------------------------AW--------RKQSRRKVMEAFEQAERKPKPNPN 361
Query: 339 EMFEDVYHEMPPHIR 353
+F DVY EMP +R
Sbjct: 362 LLFSDVYQEMPAQLR 376
>pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1V1R|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 142/375 (37%), Positives = 189/375 (50%), Gaps = 101/375 (26%)
Query: 31 NVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVY 90
++ E +++YK+M LN MD+++YESQRQGRISFYMT+ GEEG+HVGSAAALD DLV+
Sbjct: 51 HLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVF 110
Query: 91 AQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQ 150
QYRE GVLM+R + +E + Q YGNI KG+QMPVHYG ++ HFVTISSPLATQ+PQ
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 151 AVGSAYAYKLKKNEKVVIVYFGEGAA-----------IVTMATPFQPQRRNSMEEMGS-- 197
AVG+AYA K +VVI YFGEGAA T+ P RN+ + +
Sbjct: 171 AVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPT 230
Query: 198 ----RPEGLAW----------------VF-----------------QPLELTETT--IGH 218
R +G+A VF QP + T IGH
Sbjct: 231 SEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGH 290
Query: 219 HSTSDDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEEQDEQIGHHSTSDDSTAYR 278
STSDDS+AYRS EV ++ ++PI W EEQ++
Sbjct: 291 ASTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEK--------------- 335
Query: 279 SKSEVQEYEINNNPIXXXXXXXXXXXXWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWK 338
W +K+S++ V+ + +E+K KP+
Sbjct: 336 --------------------------AW--------RKQSRRKVMEAFEQAERKPKPNPN 361
Query: 339 EMFEDVYHEMPPHIR 353
+F DVY EMP +R
Sbjct: 362 LLFSDVYQEMPAQLR 376
>pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 218 bits (555), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 141/375 (37%), Positives = 189/375 (50%), Gaps = 101/375 (26%)
Query: 31 NVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVY 90
++ E +++YK+M LN MD+++YESQRQGRISFYMT+ GEEG+HVGSAAALD DLV+
Sbjct: 51 HLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVF 110
Query: 91 AQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQ 150
QYRE GVLM+R + +E + Q YGNI KG+QMPVHYG ++ HFVTISSPLATQ+PQ
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 151 AVGSAYAYKLKKNEKVVIVYFGEGAA-----------IVTMATPFQPQRRNSMEEMGS-- 197
AVG+AYA K +VVI YFGEGAA T+ P RN+ + +
Sbjct: 171 AVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPT 230
Query: 198 ----RPEGLAW----------------VF-----------------QPLELTETT--IGH 218
R +G+A VF QP + T IGH
Sbjct: 231 SEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGH 290
Query: 219 HSTSDDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEEQDEQIGHHSTSDDSTAYR 278
STSDDS+A+RS EV ++ ++PI W EEQ++
Sbjct: 291 ASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEK--------------- 335
Query: 279 SKSEVQEYEINNNPIXXXXXXXXXXXXWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWK 338
W +K+S++ V+ + +E+K KP+
Sbjct: 336 --------------------------AW--------RKQSRRKVMEAFEQAERKPKPNPN 361
Query: 339 EMFEDVYHEMPPHIR 353
+F DVY EMP +R
Sbjct: 362 LLFSDVYQEMPAQLR 376
>pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 217 bits (552), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 140/375 (37%), Positives = 189/375 (50%), Gaps = 101/375 (26%)
Query: 31 NVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVY 90
++ E +++YK+M LN MD+++YESQRQGRISFYMT+ GEEG+HVGSAAALD DLV+
Sbjct: 51 HLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVF 110
Query: 91 AQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQ 150
Q+RE GVLM+R + +E + Q YGNI KG+QMPVHYG ++ HFVTISSPLATQ+PQ
Sbjct: 111 GQFREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 151 AVGSAYAYKLKKNEKVVIVYFGEGAA-----------IVTMATPFQPQRRNSMEEMGS-- 197
AVG+AYA K +VVI YFGEGAA T+ P RN+ + +
Sbjct: 171 AVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPT 230
Query: 198 ----RPEGLAW----------------VF-----------------QPLELTETT--IGH 218
R +G+A VF QP + T IGH
Sbjct: 231 SEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGH 290
Query: 219 HSTSDDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEEQDEQIGHHSTSDDSTAYR 278
STSDDS+A+RS EV ++ ++PI W EEQ++
Sbjct: 291 ASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEK--------------- 335
Query: 279 SKSEVQEYEINNNPIXXXXXXXXXXXXWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWK 338
W +K+S++ V+ + +E+K KP+
Sbjct: 336 --------------------------AW--------RKQSRRKVMEAFEQAERKPKPNPN 361
Query: 339 EMFEDVYHEMPPHIR 353
+F DVY EMP +R
Sbjct: 362 LLFSDVYQEMPAQLR 376
>pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 140/375 (37%), Positives = 188/375 (50%), Gaps = 101/375 (26%)
Query: 31 NVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVY 90
++ E +++YK+M LN MD+++YESQRQGRISFYMT+ GEEG+HVGSAAALD DLV+
Sbjct: 51 HLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVF 110
Query: 91 AQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQ 150
RE GVLM+R + +E + Q YGNI KG+QMPVHYG ++ HFVTISSPLATQ+PQ
Sbjct: 111 GAAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 151 AVGSAYAYKLKKNEKVVIVYFGEGAA-----------IVTMATPFQPQRRNSMEEMGS-- 197
AVG+AYA K +VVI YFGEGAA T+ P RN+ + +
Sbjct: 171 AVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPT 230
Query: 198 ----RPEGLAW----------------VF-----------------QPLELTETT--IGH 218
R +G+A VF QP + T IGH
Sbjct: 231 SEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGH 290
Query: 219 HSTSDDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEEQDEQIGHHSTSDDSTAYR 278
HSTSDDS+A+RS EV ++ ++PI W EEQ++
Sbjct: 291 HSTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEK--------------- 335
Query: 279 SKSEVQEYEINNNPIXXXXXXXXXXXXWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWK 338
W +K+S++ V+ + +E+K KP+
Sbjct: 336 --------------------------AW--------RKQSRRKVMEAFEQAERKPKPNPN 361
Query: 339 EMFEDVYHEMPPHIR 353
+F DVY EMP +R
Sbjct: 362 LLFSDVYQEMPAQLR 376
>pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 140/375 (37%), Positives = 188/375 (50%), Gaps = 101/375 (26%)
Query: 31 NVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVY 90
++ E +++YK+M LN MD+++YESQRQGRISFYMT+ GEEG+HVGSAAALD DLV+
Sbjct: 51 HLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVF 110
Query: 91 AQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQ 150
YRE GVLM+R + +E + Q YGNI KG+QMPVHYG ++ HFVTISSPLATQ+PQ
Sbjct: 111 GAYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 151 AVGSAYAYKLKKNEKVVIVYFGEGAA-----------IVTMATPFQPQRRNSMEEMGS-- 197
AVG+AYA K +VVI YFGEGAA T+ P RN+ + +
Sbjct: 171 AVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPT 230
Query: 198 ----RPEGLAW----------------VF-----------------QPLELTETT--IGH 218
R +G+A VF QP + T IGH
Sbjct: 231 SEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGH 290
Query: 219 HSTSDDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEEQDEQIGHHSTSDDSTAYR 278
STSDDS+A+RS EV ++ ++PI W EEQ++
Sbjct: 291 ASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEK--------------- 335
Query: 279 SKSEVQEYEINNNPIXXXXXXXXXXXXWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWK 338
W +K+S++ V+ + +E+K KP+
Sbjct: 336 --------------------------AW--------RKQSRRKVMEAFEQAERKPKPNPN 361
Query: 339 EMFEDVYHEMPPHIR 353
+F DVY EMP +R
Sbjct: 362 LLFSDVYQEMPAQLR 376
>pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 215 bits (548), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 140/375 (37%), Positives = 188/375 (50%), Gaps = 101/375 (26%)
Query: 31 NVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVY 90
++ E +++YK+M LN MD+++YESQRQGRISFYMT+ GEEG+HVGSAAALD DLV+
Sbjct: 51 HLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVF 110
Query: 91 AQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQ 150
QYRE GVLM+R + +E + Q YGNI KG+QMPVHYG ++ HFVTISSPLATQ+PQ
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 151 AVGSAYAYKLKKNEKVVIVYFGEGAA-----------IVTMATPFQPQRRNSMEEMGS-- 197
AVG+AYA K +VVI YFGEGAA T+ P RN+ + +
Sbjct: 171 AVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPT 230
Query: 198 ----RPEGLAW----------------VF-----------------QPLELTETT--IGH 218
R +G+A VF QP + T IGH
Sbjct: 231 SEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGH 290
Query: 219 HSTSDDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEEQDEQIGHHSTSDDSTAYR 278
STS DS+A+RS EV ++ ++PI W EEQ++
Sbjct: 291 ASTSADSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEK--------------- 335
Query: 279 SKSEVQEYEINNNPIXXXXXXXXXXXXWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWK 338
W +K+S++ V+ + +E+K KP+
Sbjct: 336 --------------------------AW--------RKQSRRKVMEAFEQAERKPKPNPN 361
Query: 339 EMFEDVYHEMPPHIR 353
+F DVY EMP +R
Sbjct: 362 LLFSDVYQEMPAQLR 376
>pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 215 bits (547), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 140/375 (37%), Positives = 188/375 (50%), Gaps = 101/375 (26%)
Query: 31 NVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVY 90
++ E +++YK+M LN MD+++YESQRQGRISFYMT+ GEEG+HVGSAAALD DLV+
Sbjct: 51 HLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVF 110
Query: 91 AQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQ 150
Q RE GVLM+R + +E + Q YGNI KG+QMPVHYG ++ HFVTISSPLATQ+PQ
Sbjct: 111 GQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 151 AVGSAYAYKLKKNEKVVIVYFGEGAA-----------IVTMATPFQPQRRNSMEEMGS-- 197
AVG+AYA K +VVI YFGEGAA T+ P RN+ + +
Sbjct: 171 AVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPT 230
Query: 198 ----RPEGLAW----------------VF-----------------QPLELTETT--IGH 218
R +G+A VF QP + T IGH
Sbjct: 231 SEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGH 290
Query: 219 HSTSDDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEEQDEQIGHHSTSDDSTAYR 278
STSDDS+A+RS EV ++ ++PI W EEQ++
Sbjct: 291 ASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEK--------------- 335
Query: 279 SKSEVQEYEINNNPIXXXXXXXXXXXXWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWK 338
W +K+S++ V+ + +E+K KP+
Sbjct: 336 --------------------------AW--------RKQSRRKVMEAFEQAERKPKPNPN 361
Query: 339 EMFEDVYHEMPPHIR 353
+F DVY EMP +R
Sbjct: 362 LLFSDVYQEMPAQLR 376
>pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|C Chain C, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|E Chain E, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|G Chain G, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 410
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 83/153 (54%)
Query: 23 NGQSSHLSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAA 82
+ Q ++D + + + M+ D M +QRQ ++SFYM S GEE G A A
Sbjct: 63 DAQGPWAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALA 122
Query: 83 LDPEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISS 142
L+ D+ + YR+ +LM R S+ +MI QL N KG+Q+P+ Y R+ F TIS
Sbjct: 123 LNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISG 182
Query: 143 PLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGA 175
LATQ QAVG A A +K + K+ + G+GA
Sbjct: 183 NLATQFVQAVGWAMASAIKGDTKIASAWIGDGA 215
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 266 GHHSTSDDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEKQDEQLKKESKQLVLNS 325
G HSTSDD + YR + + + + PI WSE++ + E + V+ +
Sbjct: 310 GPHSTSDDPSKYRPADDWSHFPLGD-PIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAA 368
Query: 326 IRISEKKLK------PSWKEMFEDVYHEMPPHIR 353
+ +E+ PS MFEDVY EMP H+R
Sbjct: 369 QKEAEQYGTLANGHIPSAASMFEDVYKEMPDHLR 402
>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|C Chain C, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 367
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Query: 31 NVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPE-DLV 89
+++ E R+Y+ M+ +D+ R G+ SF ++G E + V A A+ P D V
Sbjct: 32 DLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWV 91
Query: 90 YAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLP 149
+ YR+ G+ + G +++++ Q+ +KG+QMP H GS+ +F T++SP+A+ +P
Sbjct: 92 FPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVP 151
Query: 150 QAVGSAYAYKLKKNEKVVIVYFGEGA 175
A G+A + KL + +V + FG+GA
Sbjct: 152 PAAGAAISMKLLRTGQVAVCTFGDGA 177
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 266 GHHSTSDDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEKQDEQLKKESKQLVLNS 325
G HS++DD + YR K EV + +PI W+E+ +E +++E + +
Sbjct: 271 GPHSSADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERG 329
Query: 326 IRISEKK--LKPSWKEMFEDVYHEMPPHI 352
++ +E+ + P W MFEDV+ E P H+
Sbjct: 330 LKEAEEAGPVPPEW--MFEDVFAEKPWHL 356
>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase, E1b)
Length = 407
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%)
Query: 23 NGQSSHLSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAA 82
+ Q ++D + + + + D +QRQ + SFY S GEE G A A
Sbjct: 62 DAQGPWAEDIDPQILRQGXRAXLKTRIFDSRXVVAQRQKKXSFYXQSLGEEAIGSGQALA 121
Query: 83 LDPEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISS 142
L+ D + YR+ +L R S+ + I QL N KG+Q+P+ Y R+ F TIS
Sbjct: 122 LNRTDXCFPTYRQQSILXARDVSLVEXICQLLSNERDPLKGRQLPIXYSVREAGFFTISG 181
Query: 143 PLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGA 175
LATQ QAVG A A +K + K+ + G+GA
Sbjct: 182 NLATQFVQAVGWAXASAIKGDTKIASAWIGDGA 214
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 266 GHHSTSDDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEKQDEQLKKESKQLVLNS 325
G HSTSDD + YR + + + + PI WSE++ + E + V+ +
Sbjct: 309 GPHSTSDDPSKYRPADDWSHFPLGD-PIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAA 367
Query: 326 IRISEKKLK------PSWKEMFEDVYHEMPPHIR 353
+ +E+ PS FEDVY E P H+R
Sbjct: 368 QKEAEQYGTLANGHIPSAASXFEDVYKEXPDHLR 401
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 73/343 (21%), Positives = 134/343 (39%), Gaps = 42/343 (12%)
Query: 29 LSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDL 88
+ + +E + + MV +D+ RQGR+ FY ++G+E S + S AL+ ED
Sbjct: 39 MPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDF 98
Query: 89 VYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSP---LA 145
+ YR+ ++W G + Q G+ G Q+P V + P +
Sbjct: 99 ILPGYRDVPQIIWHGLPLYQAFLFSRGHF----HGNQIP--------EGVNVLPPQIIIG 146
Query: 146 TQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI-------VTMATPFQPQRRNSMEE---M 195
Q QA G A K++ + V I Y G+G + A F+ ++
Sbjct: 147 AQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFA 206
Query: 196 GSRPEGLAWVFQPLELTETTIGHHSTSDDS----TAYRSKSEVQEYEINNNPIXXXXXXX 251
S P V + L G D Y + +E IN
Sbjct: 207 ASTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGE--------- 257
Query: 252 XXXXXWSEEQDEQIGHHSTS-DDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEKQ 310
E + G H+ S DD T YRSK E++ +P+ WSE++
Sbjct: 258 --GPTLIETLCFRYGPHTMSGDDPTRYRSK-ELENEWAKKDPLVRFRKFLEAKGLWSEEE 314
Query: 311 DEQLKKESKQLVLNSIRISEKKLKPSWKEMFEDVYHEMPPHIR 353
+ + +++K+ + +I+ +++ K ++ ++ E+P +++
Sbjct: 315 ENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEELPFNLK 357
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|I Chain I, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|K Chain K, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|M Chain M, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|O Chain O, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Q Chain Q, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|S Chain S, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|U Chain U, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|W Chain W, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Y Chain Y, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|1 Chain 1, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|3 Chain 3, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|5 Chain 5, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/336 (20%), Positives = 132/336 (39%), Gaps = 34/336 (10%)
Query: 32 VDNETNIRMYKTMVTLNEMDKVMYESQRQGRI-SFYMTSSGEEGSHVGSAAALDPEDLVY 90
+ E ++ Y+ M T+ M+ + +Q I F G+E VG A ++P D +
Sbjct: 48 LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 107
Query: 91 AQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQ 150
YR G RG SV +++ +L G G KGK +H ++ +F + + Q+P
Sbjct: 108 TAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPL 165
Query: 151 AVGSAYAYKLKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLAWVFQPLE 210
G A A K ++V + +G+GAA F+ ++ W +
Sbjct: 166 GAGIALACKYNGKDEVCLTLYGDGAA--NQGQIFEAYNMAAL-----------WKLPCIF 212
Query: 211 LTE-------TTIGHHSTSDDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWS----- 258
+ E T + + S D Y+ + ++ I +
Sbjct: 213 ICENNRYGMGTAVERAAASTDY--YKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKG 270
Query: 259 ----EEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEKQDEQL 314
E Q + HS SD AYR++ E+QE ++PI S ++ +++
Sbjct: 271 PILMELQTYRYHGHSMSDPGVAYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEI 330
Query: 315 KKESKQLVLNSIRISEKKLKPSWKEMFEDVYHEMPP 350
E ++ + ++ + + +P +E+ +Y PP
Sbjct: 331 DVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDPP 366
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/334 (20%), Positives = 131/334 (39%), Gaps = 30/334 (8%)
Query: 32 VDNETNIRMYKTMVTLNEMDKVMYESQRQGRI-SFYMTSSGEEGSHVGSAAALDPEDLVY 90
+ E ++ Y+ M T+ M+ + +Q I F G+E VG A ++P D +
Sbjct: 48 LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 107
Query: 91 AQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQ 150
YR G RG SV +++ +L G G KGK +H ++ +F + + Q+P
Sbjct: 108 TAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPL 165
Query: 151 AVGSAYAYKLKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLAWVFQPLE 210
G A A K ++V + +G+GAA F+ ++ W +
Sbjct: 166 GAGIALACKYNGKDEVCLTLYGDGAA--NQGQIFEAYNMAAL-----------WKLPCIF 212
Query: 211 LTETTIGHHSTSDDSTA-----YRSKSEVQEYEINNNPIXXXXXXXXXXXXWS------- 258
+ E TS + A Y+ + ++ I +
Sbjct: 213 ICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPI 272
Query: 259 --EEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEKQDEQLKK 316
E Q + HS SD +YR++ E+QE ++PI S ++ +++
Sbjct: 273 LMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDV 332
Query: 317 ESKQLVLNSIRISEKKLKPSWKEMFEDVYHEMPP 350
E ++ + ++ + + +P +E+ +Y PP
Sbjct: 333 EVRKEIEDAAQFATADPEPPLEELGYHIYSSDPP 366
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/336 (20%), Positives = 131/336 (38%), Gaps = 34/336 (10%)
Query: 32 VDNETNIRMYKTMVTLNEMDKVMYESQRQGRI-SFYMTSSGEEGSHVGSAAALDPEDLVY 90
+ E ++ Y+ M T+ M+ + +Q I F G+E VG A ++P D +
Sbjct: 48 LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 107
Query: 91 AQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQ 150
YR G RG SV +++ +L G G KGK +H ++ +F + + Q+P
Sbjct: 108 TAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPL 165
Query: 151 AVGSAYAYKLKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLAWVFQPLE 210
G A A K ++V + +G+GAA F+ ++ W +
Sbjct: 166 GAGIALACKYNGKDEVCLTLYGDGAA--NQGQIFEAYNMAAL-----------WKLPCIF 212
Query: 211 LTE-------TTIGHHSTSDDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWS----- 258
+ E T + + S D Y+ + ++ I +
Sbjct: 213 ICENNRYGMGTAVERAAASTDY--YKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKG 270
Query: 259 ----EEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEKQDEQL 314
E Q + H SD AYR++ E+QE ++PI S ++ +++
Sbjct: 271 PILMELQTYRYHGHXMSDPGVAYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEI 330
Query: 315 KKESKQLVLNSIRISEKKLKPSWKEMFEDVYHEMPP 350
E ++ + ++ + + +P +E+ +Y PP
Sbjct: 331 DVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDPP 366
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 382
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 68/334 (20%), Positives = 131/334 (39%), Gaps = 30/334 (8%)
Query: 32 VDNETNIRMYKTMVTLNEMDKVMYESQRQGRI-SFYMTSSGEEGSHVGSAAALDPEDLVY 90
+ E ++ Y+ M T+ M+ + +Q I F G+E VG A ++P D +
Sbjct: 48 LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 107
Query: 91 AQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQ 150
+R G RG SV +++ +L G G KGK +H ++ +F + + Q+P
Sbjct: 108 TAFRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPL 165
Query: 151 AVGSAYAYKLKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLAWVFQPLE 210
G A A K ++V + +G+GAA F+ ++ W +
Sbjct: 166 GAGIALACKYNGKDEVCLTLYGDGAA--NQGQIFEAYNMAAL-----------WKLPCIF 212
Query: 211 LTETTIGHHSTSDDSTA-----YRSKSEVQEYEINNNPIXXXXXXXXXXXXWS------- 258
+ E TS + A Y+ + ++ I +
Sbjct: 213 ICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPI 272
Query: 259 --EEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEKQDEQLKK 316
E Q + HS SD +YR++ E+QE ++PI S ++ +++
Sbjct: 273 LMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDV 332
Query: 317 ESKQLVLNSIRISEKKLKPSWKEMFEDVYHEMPP 350
E ++ + ++ + + +P +E+ +Y PP
Sbjct: 333 EVRKEIEDAAQFATADPEPPLEELGYHIYSSDPP 366
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|C Chain C, Human Pyruvate Dehydrogenase S264e Variant
Length = 365
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/331 (20%), Positives = 129/331 (38%), Gaps = 30/331 (9%)
Query: 35 ETNIRMYKTMVTLNEMDKVMYESQRQGRI-SFYMTSSGEEGSHVGSAAALDPEDLVYAQY 93
E ++ Y+ M T+ M+ + +Q I F G+E VG A ++P D + Y
Sbjct: 34 EDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAY 93
Query: 94 RETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVG 153
R G RG SV +++ +L G G KGK +H ++ +F + + Q+P G
Sbjct: 94 RAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAG 151
Query: 154 SAYAYKLKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLAWVFQPLELTE 213
A A K ++V + +G+GAA F+ ++ W + + E
Sbjct: 152 IALACKYNGKDEVCLTLYGDGAA--NQGQIFEAYNMAAL-----------WKLPCIFICE 198
Query: 214 TTIGHHSTSDDSTA-----YRSKSEVQEYEINNNPIXXXXXXXXXXXXWS---------E 259
TS + A Y+ + ++ I + E
Sbjct: 199 NNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILME 258
Query: 260 EQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEKQDEQLKKESK 319
Q + H SD +YR++ E+QE ++PI S ++ +++ E +
Sbjct: 259 LQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVR 318
Query: 320 QLVLNSIRISEKKLKPSWKEMFEDVYHEMPP 350
+ + ++ + + +P +E+ +Y PP
Sbjct: 319 KEIEDAAQFATADPEPPLEELGYHIYSSDPP 349
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 368
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 15/150 (10%)
Query: 29 LSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDL 88
+ + +E + + MV +D+ RQGR+ FY ++G+E S + S AL+ ED
Sbjct: 38 MPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDF 97
Query: 89 VYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSP---LA 145
+ YR+ ++W G + Q G+ G Q+P V + P +
Sbjct: 98 ILPGYRDVPQIIWHGLPLYQAFLFSRGHF----HGNQIP--------EGVNVLPPQIIIG 145
Query: 146 TQLPQAVGSAYAYKLKKNEKVVIVYFGEGA 175
Q QA G A K++ + V I Y G+G
Sbjct: 146 AQYIQAAGVALGLKMRGKKAVAITYTGDGG 175
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 267 HHSTSDDSTAYRSKSEVQEYEINNNPIXXXXXXXXXXXXWSEKQDEQLKKESKQLVLNSI 326
H + DD T YRSK E+ +P+ WSE+++ + +++K+ + +I
Sbjct: 271 HTMSGDDPTRYRSKELENEWA-KKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAI 329
Query: 327 RISEKKLKPSWKEMFEDVYHEMPPHIR 353
+ +++ K ++ ++ E+P +++
Sbjct: 330 KKADETPKQKVTDLISIMFEELPFNLK 356
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
Length = 368
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 15/150 (10%)
Query: 29 LSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDL 88
+ + +E + + MV +D+ RQGR+ FY ++G+E S + S AL+ ED
Sbjct: 38 MPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDF 97
Query: 89 VYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSP---LA 145
+ YR+ ++W G + Q G+ G Q+P V + P +
Sbjct: 98 ILPGYRDVPQIIWHGLPLYQAFLFSRGHF----HGNQIP--------EGVNVLPPQIIIG 145
Query: 146 TQLPQAVGSAYAYKLKKNEKVVIVYFGEGA 175
Q QA G A K++ + V I Y G+G
Sbjct: 146 AQYIQAAGVALGLKMRGKKAVAITYTGDGG 175
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 15/150 (10%)
Query: 29 LSNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDL 88
+ + +E + + MV +D+ RQGR+ FY ++G+E S + S AL+ ED
Sbjct: 39 MPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDF 98
Query: 89 VYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSP---LA 145
+ YR+ ++W G + Q G+ G Q+P V + P +
Sbjct: 99 ILPGYRDVPQIIWHGLPLYQAFLFSRGHF----HGNQIP--------EGVNVLPPQIIIG 146
Query: 146 TQLPQAVGSAYAYKLKKNEKVVIVYFGEGA 175
Q QA G A K++ + V I Y G+G
Sbjct: 147 AQYIQAAGVALGLKMRGKKAVAITYTGDGG 176
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase
pdb|1NI4|C Chain C, Human Pyruvate Dehydrogenase
Length = 365
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 116/301 (38%), Gaps = 29/301 (9%)
Query: 64 SFYMTSSGEEGSHVGSAAALDPEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKG 123
F G+E VG A ++P D + YR G RG SV +++ +L G G KG
Sbjct: 64 GFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKG 123
Query: 124 KQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAIVTMATP 183
K H ++ +F + + Q+P G A A K ++V + +G+GAA
Sbjct: 124 KGGSXHXYAK--NFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAA------- 174
Query: 184 FQPQRRNSMEEMGSRPEGLAWVFQPLELTETTIGHHSTSDDSTA-----YRSKSEVQEYE 238
N + + W + + E TS + A Y+ +
Sbjct: 175 ------NQGQIFEAYNXAALWKLPCIFICENNRYGXGTSVERAAASTDYYKRGDFIPGLR 228
Query: 239 INNNPIXXXXXXXXXXXXWS---------EEQDEQIGHHSTSDDSTAYRSKSEVQEYEIN 289
++ I + E Q + HS SD +YR++ E+QE
Sbjct: 229 VDGXDILCVREATRFAAAYCRSGKGPILXELQTYRYHGHSXSDPGVSYRTREEIQEVRSK 288
Query: 290 NNPIXXXXXXXXXXXXWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWKEMFEDVYHEMP 349
++PI S ++ +++ E ++ + ++ + + +P +E+ +Y P
Sbjct: 289 SDPIXLLKDRXVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDP 348
Query: 350 P 350
P
Sbjct: 349 P 349
>pdb|3Q88|A Chain A, Glucose-6-Phosphate Isomerase From Francisella Tularensis
Complexed With Ribose 1,5-Bisphosphate.
pdb|3Q7I|A Chain A, Glucose-6-Phosphate Isomerase From Francisella Tularensis
Complexed With 6-Phosphogluconic Acid
Length = 543
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 101 WRGFSVEQMIDQLYGNIGSSDKGKQM------PVHYGSRQHHFVTISSPLATQLPQAV 152
WRGFS +++ D + IG SD G +M P H + HFV S+ A L QA+
Sbjct: 132 WRGFSGKKITDIVNIGIGGSDLGPKMVVRALQPYHCTDLKVHFV--SNVDADSLLQAL 187
>pdb|3LJK|A Chain A, Glucose-6-Phosphate Isomerase From Francisella Tularensis.
pdb|3M5P|A Chain A, Glucose-6-Phosphate Isomerase From Francisella Tularensis
Complexed With Fructose-6-Phosphate
Length = 543
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 101 WRGFSVEQMIDQLYGNIGSSDKGKQM------PVHYGSRQHHFVTISSPLATQLPQAV 152
WRGFS +++ D + IG SD G + P H + HFV S+ A L QA+
Sbjct: 132 WRGFSGKKITDIVNIGIGGSDLGPKXVVRALQPYHCTDLKVHFV--SNVDADSLLQAL 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.127 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,177,105
Number of Sequences: 62578
Number of extensions: 384085
Number of successful extensions: 821
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 711
Number of HSP's gapped (non-prelim): 90
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)