Query psy16520
Match_columns 353
No_of_seqs 154 out of 1545
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 23:24:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16520.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16520hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1071 AcoA Pyruvate/2-oxoglu 100.0 2.2E-69 4.8E-74 518.0 20.7 298 31-353 23-350 (358)
2 KOG1182|consensus 100.0 4.1E-62 8.9E-67 449.6 18.5 307 19-353 67-408 (432)
3 PLN02269 Pyruvate dehydrogenas 100.0 3.1E-60 6.8E-65 461.9 23.7 300 31-348 26-344 (362)
4 KOG0225|consensus 100.0 3.9E-59 8.4E-64 433.3 18.0 295 30-349 54-373 (394)
5 CHL00149 odpA pyruvate dehydro 100.0 9.6E-58 2.1E-62 442.8 21.9 291 31-347 16-341 (341)
6 TIGR03182 PDH_E1_alph_y pyruva 100.0 3E-57 6.5E-62 435.7 21.7 287 34-346 1-315 (315)
7 PLN02374 pyruvate dehydrogenas 100.0 5.2E-56 1.1E-60 440.2 21.5 293 31-349 82-409 (433)
8 TIGR03181 PDH_E1_alph_x pyruva 100.0 4E-55 8.7E-60 425.1 20.9 290 30-353 19-335 (341)
9 PF00676 E1_dh: Dehydrogenase 100.0 1.6E-52 3.4E-57 400.3 19.5 273 41-338 1-300 (300)
10 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 3.3E-50 7.2E-55 383.7 18.3 265 40-329 1-293 (293)
11 PRK09404 sucA 2-oxoglutarate d 100.0 1.8E-38 3.8E-43 337.3 20.2 280 31-346 185-527 (924)
12 COG1071 AcoA Pyruvate/2-oxoglu 100.0 1.7E-37 3.7E-42 298.0 -5.7 262 3-311 42-353 (358)
13 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 5.9E-32 1.3E-36 286.4 18.6 277 31-336 185-521 (929)
14 KOG0225|consensus 100.0 2.7E-34 5.7E-39 267.7 -7.9 255 3-302 74-371 (394)
15 cd02016 TPP_E1_OGDC_like Thiam 99.9 4.9E-28 1.1E-32 225.6 5.6 202 50-280 1-262 (265)
16 PLN02269 Pyruvate dehydrogenas 99.9 1.5E-29 3.2E-34 246.8 -5.9 249 3-302 45-343 (362)
17 KOG1182|consensus 99.9 1.5E-27 3.3E-32 220.8 0.3 266 5-323 103-419 (432)
18 CHL00149 odpA pyruvate dehydro 99.9 6.4E-27 1.4E-31 227.3 -1.5 231 2-266 34-309 (341)
19 PF00676 E1_dh: Dehydrogenase 99.9 2.9E-28 6.2E-33 233.2 -14.9 230 6-266 13-277 (300)
20 TIGR03182 PDH_E1_alph_y pyruva 99.9 8.9E-27 1.9E-31 224.4 -5.9 231 2-266 16-284 (315)
21 PLN02374 pyruvate dehydrogenas 99.9 2.6E-26 5.7E-31 228.2 -4.0 230 2-266 100-375 (433)
22 TIGR03181 PDH_E1_alph_x pyruva 99.9 3.7E-25 8E-30 215.3 -4.9 260 2-302 38-329 (341)
23 cd02000 TPP_E1_PDC_ADC_BCADC T 99.9 6.1E-25 1.3E-29 209.8 -7.2 232 2-266 10-279 (293)
24 PRK12270 kgd alpha-ketoglutara 99.7 5.4E-16 1.2E-20 162.4 16.0 282 31-335 489-824 (1228)
25 PRK09404 sucA 2-oxoglutarate d 99.7 1.3E-18 2.9E-23 185.9 -7.0 136 109-266 343-499 (924)
26 COG0567 SucA 2-oxoglutarate de 99.5 1.1E-12 2.4E-17 137.7 19.8 277 29-333 169-500 (906)
27 KOG0451|consensus 99.5 3.7E-13 8E-18 133.5 15.3 271 34-336 156-497 (913)
28 KOG0450|consensus 99.5 6.3E-13 1.4E-17 134.6 15.6 279 31-333 245-576 (1017)
29 PRK12315 1-deoxy-D-xylulose-5- 99.4 6.5E-13 1.4E-17 138.0 6.3 170 61-268 36-248 (581)
30 TIGR00239 2oxo_dh_E1 2-oxoglut 99.3 5.6E-14 1.2E-18 150.2 -2.7 137 108-266 343-500 (929)
31 cd02016 TPP_E1_OGDC_like Thiam 99.0 1.5E-12 3.3E-17 121.9 -10.5 97 109-226 141-258 (265)
32 PRK11864 2-ketoisovalerate fer 98.6 1.2E-07 2.6E-12 90.6 6.7 83 93-177 15-105 (300)
33 cd02011 TPP_PK Thiamine pyroph 98.5 1.7E-07 3.7E-12 86.0 7.3 140 70-241 2-176 (227)
34 PRK12270 kgd alpha-ketoglutara 97.5 2.2E-05 4.8E-10 84.0 -0.3 115 124-266 675-804 (1228)
35 TIGR00232 tktlase_bact transke 97.3 0.00047 1E-08 73.1 7.1 104 135-269 103-248 (653)
36 PRK12754 transketolase; Review 97.0 0.002 4.4E-08 68.3 7.6 103 136-269 108-252 (663)
37 PTZ00089 transketolase; Provis 96.9 0.003 6.4E-08 67.2 8.5 125 138-288 112-277 (661)
38 PRK12315 1-deoxy-D-xylulose-5- 96.6 5.8E-05 1.3E-09 78.9 -7.1 165 6-218 28-247 (581)
39 cd02007 TPP_DXS Thiamine pyrop 96.3 0.0017 3.7E-08 58.5 1.7 40 138-177 71-110 (195)
40 PRK12753 transketolase; Review 96.3 0.0024 5.3E-08 67.8 2.6 109 136-270 108-253 (663)
41 PRK05899 transketolase; Review 96.1 0.0036 7.8E-08 66.2 2.8 124 136-286 112-275 (624)
42 cd02012 TPP_TK Thiamine pyroph 95.5 0.0036 7.9E-08 58.7 0.0 109 136-270 99-234 (255)
43 PLN02790 transketolase 95.4 0.0047 1E-07 65.6 0.5 42 136-177 99-150 (654)
44 PRK05261 putative phosphoketol 94.3 0.033 7.1E-07 59.9 3.2 49 125-177 125-173 (785)
45 COG3959 Transketolase, N-termi 92.9 1.1 2.4E-05 41.1 10.0 71 101-177 83-154 (243)
46 COG0567 SucA 2-oxoglutarate de 91.0 0.27 5.9E-06 53.2 4.6 136 107-266 340-482 (906)
47 PRK05444 1-deoxy-D-xylulose-5- 88.6 0.1 2.2E-06 54.8 -0.9 41 137-177 112-153 (580)
48 PF00456 Transketolase_N: Tran 88.1 0.15 3.3E-06 49.8 0.0 40 138-177 107-156 (332)
49 TIGR00204 dxs 1-deoxy-D-xylulo 87.8 0.26 5.6E-06 52.2 1.5 38 140-177 109-146 (617)
50 TIGR00232 tktlase_bact transke 87.5 0.13 2.7E-06 54.9 -1.0 81 113-218 147-246 (653)
51 PTZ00089 transketolase; Provis 85.2 0.2 4.4E-06 53.4 -0.9 91 124-238 175-276 (661)
52 cd02007 TPP_DXS Thiamine pyrop 84.0 0.19 4E-06 45.3 -1.5 67 124-215 124-191 (195)
53 PLN02790 transketolase 82.2 0.26 5.7E-06 52.5 -1.5 68 124-216 164-240 (654)
54 PRK12754 transketolase; Review 81.3 0.73 1.6E-05 49.2 1.4 71 124-218 173-250 (663)
55 PRK12753 transketolase; Review 76.0 1.1 2.3E-05 48.0 0.7 72 124-219 173-251 (663)
56 cd02013 TPP_Xsc_like Thiamine 74.7 0.52 1.1E-05 42.3 -1.8 32 142-177 53-84 (196)
57 PLN02582 1-deoxy-D-xylulose-5- 70.8 2 4.4E-05 46.0 1.3 40 138-177 140-179 (677)
58 cd00568 TPP_enzymes Thiamine p 64.0 3.6 7.8E-05 35.1 1.3 35 139-177 43-77 (168)
59 cd03372 TPP_ComE Thiamine pyro 61.6 5 0.00011 35.4 1.8 32 141-177 41-72 (179)
60 KOG0523|consensus 60.2 4.9 0.00011 41.9 1.6 37 141-177 117-154 (632)
61 PRK05444 1-deoxy-D-xylulose-5- 57.0 2 4.4E-05 45.1 -1.8 23 124-147 167-189 (580)
62 cd02002 TPP_BFDC Thiamine pyro 55.2 8.7 0.00019 33.4 2.2 32 142-177 49-80 (178)
63 KOG0451|consensus 53.0 2.8 6.1E-05 43.3 -1.4 116 124-266 351-476 (913)
64 PF09851 SHOCT: Short C-termin 51.4 30 0.00064 21.4 3.5 27 292-319 4-30 (31)
65 PRK11865 pyruvate ferredoxin o 51.1 11 0.00024 36.3 2.4 43 135-177 62-104 (299)
66 cd02004 TPP_BZL_OCoD_HPCL Thia 48.9 12 0.00027 32.3 2.1 33 141-177 47-79 (172)
67 KOG0450|consensus 48.7 5 0.00011 42.6 -0.5 118 124-265 433-557 (1017)
68 PRK11032 hypothetical protein; 46.7 79 0.0017 27.6 6.7 42 293-334 30-71 (160)
69 COG0021 TktA Transketolase [Ca 46.3 21 0.00045 37.8 3.6 41 137-177 111-161 (663)
70 PRK07525 sulfoacetaldehyde ace 44.3 3.8 8.3E-05 43.0 -2.2 32 142-177 435-466 (588)
71 PRK07524 hypothetical protein; 43.9 10 0.00022 39.3 0.9 32 142-177 407-438 (535)
72 cd02017 TPP_E1_EcPDC_like Thia 40.8 1.2E+02 0.0027 30.3 7.9 41 137-177 113-160 (386)
73 cd02011 TPP_PK Thiamine pyroph 39.1 1.3 2.9E-05 40.8 -5.7 44 134-177 120-170 (227)
74 PLN02234 1-deoxy-D-xylulose-5- 35.5 18 0.00038 38.7 1.1 40 138-177 173-212 (641)
75 PF10925 DUF2680: Protein of u 35.4 1.2E+02 0.0027 21.8 5.2 30 296-325 23-52 (59)
76 PRK05899 transketolase; Review 34.8 6.1 0.00013 41.9 -2.5 74 124-222 177-256 (624)
77 cd02014 TPP_POX Thiamine pyrop 33.6 23 0.0005 30.9 1.5 32 142-177 51-82 (178)
78 cd02012 TPP_TK Thiamine pyroph 33.3 4.2 9.2E-05 37.9 -3.5 35 124-159 154-193 (255)
79 cd02001 TPP_ComE_PpyrDC Thiami 32.9 27 0.00059 30.0 1.8 32 141-177 41-72 (157)
80 TIGR00204 dxs 1-deoxy-D-xylulo 32.8 8.2 0.00018 41.0 -1.9 25 124-149 160-184 (617)
81 PF02775 TPP_enzyme_C: Thiamin 31.4 34 0.00073 28.9 2.0 34 140-177 26-59 (153)
82 TIGR03142 cytochro_ccmI cytoch 31.2 78 0.0017 25.8 4.1 29 302-330 53-81 (117)
83 cd02015 TPP_AHAS Thiamine pyro 30.6 33 0.00072 30.1 1.9 32 142-177 50-81 (186)
84 PF02979 NHase_alpha: Nitrile 30.5 1E+02 0.0023 27.5 4.9 40 293-332 9-53 (188)
85 cd02008 TPP_IOR_alpha Thiamine 29.5 56 0.0012 28.5 3.2 33 141-177 50-82 (178)
86 cd03371 TPP_PpyrDC Thiamine py 28.0 39 0.00084 30.0 1.9 32 142-177 48-79 (188)
87 TIGR01323 nitrile_alph nitrile 27.5 1.1E+02 0.0024 27.1 4.6 29 293-321 3-31 (185)
88 cd02005 TPP_PDC_IPDC Thiamine 27.1 34 0.00074 30.1 1.4 32 142-177 50-81 (183)
89 PRK12571 1-deoxy-D-xylulose-5- 27.0 33 0.00072 36.6 1.5 33 145-177 122-154 (641)
90 PF10415 FumaraseC_C: Fumarase 26.8 70 0.0015 22.6 2.7 20 295-314 27-46 (55)
91 PF10642 Tom5: Mitochondrial i 26.5 1.5E+02 0.0033 20.6 4.2 26 304-329 7-32 (49)
92 cd02006 TPP_Gcl Thiamine pyrop 26.2 44 0.00094 29.8 1.9 32 142-177 57-88 (202)
93 TIGR03846 sulfopy_beta sulfopy 25.7 51 0.0011 29.1 2.2 32 141-177 41-72 (181)
94 PF07295 DUF1451: Protein of u 25.3 1.4E+02 0.003 25.6 4.8 40 292-331 19-58 (146)
95 PRK08327 acetolactate synthase 25.0 52 0.0011 34.4 2.5 31 143-177 431-461 (569)
96 cd08325 CARD_CASP1-like Caspas 23.7 1.4E+02 0.003 22.9 4.0 39 292-330 17-55 (83)
97 TIGR02177 PorB_KorB 2-oxoacid: 23.5 48 0.001 31.8 1.7 34 139-176 50-83 (287)
98 PRK11864 2-ketoisovalerate fer 23.5 33 0.00072 33.1 0.6 39 292-330 259-297 (300)
99 cd02003 TPP_IolD Thiamine pyro 22.6 65 0.0014 28.8 2.3 32 142-177 48-79 (205)
100 PF13292 DXP_synthase_N: 1-deo 22.2 42 0.00092 31.8 1.0 36 142-177 111-146 (270)
101 PRK07092 benzoylformate decarb 22.2 63 0.0014 33.4 2.5 33 141-177 406-438 (530)
102 TIGR01323 nitrile_alph nitrile 22.1 88 0.0019 27.8 2.9 24 247-270 6-29 (185)
103 PRK11867 2-oxoglutarate ferred 21.7 52 0.0011 31.5 1.6 36 136-175 63-98 (286)
104 PF09364 XFP_N: XFP N-terminal 21.7 59 0.0013 32.2 1.9 49 125-177 123-171 (379)
105 PRK06163 hypothetical protein; 20.8 60 0.0013 29.3 1.7 33 141-177 56-88 (202)
106 PRK06725 acetolactate synthase 20.7 75 0.0016 33.3 2.6 32 142-177 422-453 (570)
107 cd08327 CARD_RAIDD Caspase act 20.4 1.1E+02 0.0024 24.2 2.9 27 292-318 22-48 (94)
108 cd02010 TPP_ALS Thiamine pyrop 20.3 55 0.0012 28.6 1.3 32 142-177 48-79 (177)
No 1
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=2.2e-69 Score=517.98 Aligned_cols=298 Identities=32% Similarity=0.532 Sum_probs=277.1
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHHHcCCcc-ccccCCCchhHHHHHHhcCCCC-CeeEecCcchHHHHHcCCCHHH
Q psy16520 31 NVDNETNIRMYKTMVTLNEMDKVMYESQRQGRIS-FYMTSSGEEGSHVGSAAALDPE-DLVYAQYRETGVLMWRGFSVEQ 108 (353)
Q Consensus 31 ~l~~d~l~~~yr~m~~~R~~d~~~~~l~~~Gk~g-~~h~~~G~Ea~~vg~~~al~~~-D~v~~~yR~~g~~la~G~~~~~ 108 (353)
.+++++++.+||.|+++|.||+++..++++||++ |+|++.||||++||++++|+++ ||++++||+||++|++|+|+.+
T Consensus 23 ~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~i~~~YR~h~~~l~~G~~~~~ 102 (358)
T COG1071 23 ALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDWIFPTYRDHGHLLARGVPLKE 102 (358)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCCEeecccCccccceecCCCHHH
Confidence 6789999999999999999999999999999996 9999999999999999999966 9999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCccccccCCCCccccccccccchhhhhhhhcceeeecCCc-EEEEEeecchhh----------
Q psy16520 109 MIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEK-VVIVYFGEGAAI---------- 177 (353)
Q Consensus 109 ~~~~~~g~~~g~s~G~~~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~~~~g~~-v~~v~~Gdg~~~---------- 177 (353)
++++++|+.+|+|+|+++|+||+.+++|+++++++||+|+|+|+|+||+.|+.+.++ |++|++|||+++
T Consensus 103 ~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~ 182 (358)
T COG1071 103 IMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNF 182 (358)
T ss_pred HHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988555 999999999999
Q ss_pred hh------hccccccccccccc------ccCcccCCCcccccccccccccccCCCcc----ChhHhhcCHHHHHHHHHcC
Q psy16520 178 VT------MATPFQPQRRNSME------EMGSRPEGLAWVFQPLELTETTIGHHSTS----DDSTAYRSKSEVQEYEINN 241 (353)
Q Consensus 178 a~------is~~~~~q~~~~~~------~~~~a~rgp~~~~~~~~~~~~r~~~hs~~----D~~~~yr~~~ea~~~~r~~ 241 (353)
|+ |+++.|||++.+.. ....+.|+.+| |+++.. |+.+||.+.++|++|+|++
T Consensus 183 A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~ay------------gipgv~VDG~D~~avy~~~~~A~e~AR~g 250 (358)
T COG1071 183 AAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAY------------GIPGVRVDGNDVLAVYEAAKEAVERARAG 250 (358)
T ss_pred HHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhcc------------CCCeEEECCcCHHHHHHHHHHHHHHHHcC
Confidence 32 44444444443220 14566799999 999987 9999999999999999999
Q ss_pred -CCeehhHHHHhhccCCCHHHHHHhhccCCCCCccccCCHHHHHHHHhcCChHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy16520 242 -NPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQLKKESKQ 320 (353)
Q Consensus 242 -~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~~~~~ddP~~~~~~~l~~~g~~t~~e~~~~~~e~~~ 320 (353)
+|+|+ |+.|||+.|||++||+..||+++|.++|.++| |+.+++++|++.|+||+++++++++++++
T Consensus 251 ~GPtLI------------E~~tYR~~~HS~sDd~~~YRskeE~~~~~~~D-Pi~r~~~~L~~~g~~see~~~~i~~e~~~ 317 (358)
T COG1071 251 EGPTLI------------EAVTYRYGGHSTSDDPSKYRSKEEVEEWKKRD-PIVRLRKYLIEAGILSEEELEAIEAEAKA 317 (358)
T ss_pred CCCEEE------------EEEEeecCCCCCCCCccccCCHHHHHHHhccC-hHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999 99999999999999999999999999999995 99999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHhHHhhccccCCCCCCC
Q psy16520 321 LVLNSIRISEKKLKPSWKEMFEDVYHEMPPHIR 353 (353)
Q Consensus 321 ~v~~a~~~a~~~~~p~~~~~~~~v~~~~~~~~~ 353 (353)
+|++|+++|+++|+|+++++|++||++.|++|+
T Consensus 318 ~V~ea~e~a~~~p~P~~~~~~~~Vy~~~~~~l~ 350 (358)
T COG1071 318 EVDEAVEFAEASPYPDVSELFEDVYAEGPPHLE 350 (358)
T ss_pred HHHHHHHHHHhCCCCChhHhhhcccccCChhHH
Confidence 999999999999999999999999999999873
No 2
>KOG1182|consensus
Probab=100.00 E-value=4.1e-62 Score=449.55 Aligned_cols=307 Identities=50% Similarity=0.837 Sum_probs=291.3
Q ss_pred ccCCCCCCccC---CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHcCCccccccCCCchhHHHHHHhcCCCCCeeEecCcc
Q psy16520 19 YSGSNGQSSHL---SNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVYAQYRE 95 (353)
Q Consensus 19 ~~~~~Gqea~~---~~l~~d~l~~~yr~m~~~R~~d~~~~~l~~~Gk~g~~h~~~G~Ea~~vg~~~al~~~D~v~~~yR~ 95 (353)
..+.+||-... +.++.+..+.+|++|.+.-.+|..+.+.+||||+.|+..+.|+|++.+|.++||.|+|.|+++||.
T Consensus 67 V~d~~G~ii~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRiSFYmT~~GEEa~higSAAAL~p~Dli~gQYRE 146 (432)
T KOG1182|consen 67 VMDADGQIIDKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRISFYMTNFGEEAIHIGSAAALEPQDLIYGQYRE 146 (432)
T ss_pred EecCCCcccCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEEEeccchhhhhhhhhhhCCccccccccccc
Confidence 46778875433 478899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccccCCCCccccccccccchhhhhhhhccee-eecCCcEEEEEeecc
Q psy16520 96 TGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYK-LKKNEKVVIVYFGEG 174 (353)
Q Consensus 96 ~g~~la~G~~~~~~~~~~~g~~~g~s~G~~~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~-~~~g~~v~~v~~Gdg 174 (353)
.|++|.||.+++.++.++||+..+..+||+||+||.+++.|++.+|+|+..|+|.|+|+||++| ..++|.+++||||||
T Consensus 147 aGVLlwRgftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tissplatqlpqAvGaaYa~k~~~~nnac~V~yfGdG 226 (432)
T KOG1182|consen 147 AGVLLWRGFTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLATQLPQAVGAAYALKMRKKNNACAVTYFGDG 226 (432)
T ss_pred CceEEEcCccHHHHHHHhcCCccccccccccccccCccccceEEecchhhhccchhhhhhhhhhhcccCCeEEEEEecCC
Confidence 9999999999999999999998888999999999999999999999999999999999999999 556679999999999
Q ss_pred hhh-----h-----h----------------hcccccccccccccccCcccCCCcccccccccccccccCCCcc----Ch
Q psy16520 175 AAI-----V-----T----------------MATPFQPQRRNSMEEMGSRPEGLAWVFQPLELTETTIGHHSTS----DD 224 (353)
Q Consensus 175 ~~~-----a-----~----------------is~~~~~q~~~~~~~~~~a~rgp~~~~~~~~~~~~r~~~hs~~----D~ 224 (353)
+++ | + ||||+++|+.. ..++.|||+| |+++++ |+
T Consensus 227 ~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQyr~----DGIa~kG~aY------------Gi~sIRVDGnD~ 290 (432)
T KOG1182|consen 227 AASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQYRG----DGIAVKGPAY------------GIRSIRVDGNDA 290 (432)
T ss_pred cccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcC----CceEEecccc------------ceEEEEecCcch
Confidence 999 1 1 99999999998 8999999999 999987 99
Q ss_pred hHhhcCHHHHHHHHHcC-CCeehhHHHHhhccCCCHHHHHHhhccCCCCCccccCCHHHHHHHHhcCChHHHHHHHHhhc
Q psy16520 225 STAYRSKSEVQEYEINN-NPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKK 303 (353)
Q Consensus 225 ~~~yr~~~ea~~~~r~~-~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~~~~~ddP~~~~~~~l~~~ 303 (353)
++||.+.++|.+++-.. .|+++ |+.+||+.+||++||++.||+.+|++.|.+.++|+.+|++++.++
T Consensus 291 lAvYnA~k~ARe~av~e~rPvli------------EamtYRvGHHSTSDDSt~YRsadEiq~W~~~~~pisrfr~~i~~~ 358 (432)
T KOG1182|consen 291 LAVYNAVKEAREMAVTEQRPVLI------------EAMTYRVGHHSTSDDSTAYRSADEIQYWNKSRHPISRFRKYIESN 358 (432)
T ss_pred HHHHHHHHHHHHHHHhccCchhh------------hhhhhhhccccCCCccccccchhhhhhhhcccCcHHHHHHHHHhc
Confidence 99999999999998776 99999 999999999999999999999999999999889999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHhHHhhccccCCCCCCC
Q psy16520 304 KLWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWKEMFEDVYHEMPPHIR 353 (353)
Q Consensus 304 g~~t~~e~~~~~~e~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~~~~~~~ 353 (353)
|+|+|++..+++++++++|.++++.|++.++|.+.+||+|||.++|.+|+
T Consensus 359 GWw~ee~E~~~rk~~rk~vl~a~~~aEk~~K~~~~~lF~dVYd~~P~~L~ 408 (432)
T KOG1182|consen 359 GWWSEEDESELRKNIRKKVLEAIAAAEKKEKPNLTELFEDVYDEMPKNLR 408 (432)
T ss_pred CCcChhhHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhhhHhHH
Confidence 99999999999999999999999999999999999999999999998874
No 3
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=3.1e-60 Score=461.88 Aligned_cols=300 Identities=22% Similarity=0.333 Sum_probs=267.7
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHHHcCCc-cccccCCCchhHHHHHHhcCCCCCeeEecCcchHHHHHcCCCHHHH
Q psy16520 31 NVDNETNIRMYKTMVTLNEMDKVMYESQRQGRI-SFYMTSSGEEGSHVGSAAALDPEDLVYAQYRETGVLMWRGFSVEQM 109 (353)
Q Consensus 31 ~l~~d~l~~~yr~m~~~R~~d~~~~~l~~~Gk~-g~~h~~~G~Ea~~vg~~~al~~~D~v~~~yR~~g~~la~G~~~~~~ 109 (353)
.+++++++.+||.|+++|.||+++.+++++|++ ||+|++.||||++||++++|+++|+++++||+||++|++|+++..+
T Consensus 26 ~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~~~~~~ 105 (362)
T PLN02269 26 ETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGGTVLEV 105 (362)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCCCHHHH
Confidence 678999999999999999999999999999998 7999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCCCccccccCCCCccccccccccchhhhhhhhcceeeecCCcEEEEEeecchhh----------hh
Q psy16520 110 IDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI----------VT 179 (353)
Q Consensus 110 ~~~~~g~~~g~s~G~~~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~----------a~ 179 (353)
++++||+++|+|+|+++||||+.++.|+++.++++|.|+|+|+|.|++.++.+.+.+++|++|||+++ |+
T Consensus 106 ~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~ 185 (362)
T PLN02269 106 FAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAA 185 (362)
T ss_pred HHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999998999999999999988 22
Q ss_pred ------hcccccccccccccccCcccCCCcccccccccccccccCCCcc-ChhHhhcCHHHHHHHHHcCCCeehhHHHHh
Q psy16520 180 ------MATPFQPQRRNSMEEMGSRPEGLAWVFQPLELTETTIGHHSTS-DDSTAYRSKSEVQEYEINNNPILRFKTLLF 252 (353)
Q Consensus 180 ------is~~~~~q~~~~~~~~~~a~rgp~~~~~~~~~~~~r~~~hs~~-D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~ 252 (353)
|+++.||+++.++.. .+..+.+.+ ..--..-++++... |+.++|++.+++.+++|+++|+++
T Consensus 186 ~~~lPvvfvveNN~~aist~~-~~~~~~~~~----~~~~~~~p~~~VDG~D~~av~~a~~~A~~~aR~~gP~lI------ 254 (362)
T PLN02269 186 LWDLPVIFVCENNHYGMGTAE-WRAAKSPAY----YKRGDYVPGLKVDGMDVLAVKQACKFAKEHALSNGPIVL------ 254 (362)
T ss_pred ccCcCEEEEEeCCCEeccCch-hhhccchHH----HHhhcCCCeEEECCCCHHHHHHHHHHHHHHHHhCCCEEE------
Confidence 788888888875411 111222212 00000001233333 999999999999999888899999
Q ss_pred hccCCCHHHHHHhhccCCCCCccccCCHHHHHHHHh-cCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16520 253 KKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEI-NNNPILRFKTLLFKKKLWSEKQDEQLKKESKQLVLNSIRISEK 331 (353)
Q Consensus 253 ~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~~~~-~ddP~~~~~~~l~~~g~~t~~e~~~~~~e~~~~v~~a~~~a~~ 331 (353)
|+.|||+.|||++|++..||+++|+++|.+ + ||+.+|+++|+++|+||++++++++++++++|++++++|++
T Consensus 255 ------e~~tyR~~gHs~~D~~~~YR~~~E~~~~~~~~-DPi~~~~~~L~~~g~~te~e~~~i~~e~~~~v~~a~~~A~~ 327 (362)
T PLN02269 255 ------EMDTYRYHGHSMSDPGSTYRTRDEISGVRQER-DPIERVRKLLLAHELATEAELKDIEKEIRKEVDDAVAKAKE 327 (362)
T ss_pred ------EEecCcCCCcCCCCCCcccCCHHHHHHHHhCC-CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998878999999999985 6 59999999999999999999999999999999999999999
Q ss_pred CCCCCHhHHhhccccCC
Q psy16520 332 KLKPSWKEMFEDVYHEM 348 (353)
Q Consensus 332 ~~~p~~~~~~~~v~~~~ 348 (353)
+|.|+++++|+|||+++
T Consensus 328 ~p~P~~~~~~~~vy~~~ 344 (362)
T PLN02269 328 SPMPDPSELFTNVYVKG 344 (362)
T ss_pred CCCCCHHHHHhhcccCC
Confidence 99999999999999975
No 4
>KOG0225|consensus
Probab=100.00 E-value=3.9e-59 Score=433.35 Aligned_cols=295 Identities=24% Similarity=0.362 Sum_probs=272.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHcCCc-cccccCCCchhHHHHHHhcCCCCCeeEecCcchHHHHHcCCCHHH
Q psy16520 30 SNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRI-SFYMTSSGEEGSHVGSAAALDPEDLVYAQYRETGVLMWRGFSVEQ 108 (353)
Q Consensus 30 ~~l~~d~l~~~yr~m~~~R~~d~~~~~l~~~Gk~-g~~h~~~G~Ea~~vg~~~al~~~D~v~~~yR~~g~~la~G~~~~~ 108 (353)
+.+++++++.+||+|+++|.+|.....+|+++++ ||+|++.||||++||+-+++.+.|.|+++||+||+++.+|.++..
T Consensus 54 ~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~~~ 133 (394)
T KOG0225|consen 54 VELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSVRE 133 (394)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCccHHH
Confidence 3668999999999999999999999999999998 899999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCccccccCCCCccccccccccchhhhhhhhcceeeecCCcEEEEEeecchhh----------h
Q psy16520 109 MIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI----------V 178 (353)
Q Consensus 109 ~~~~~~g~~~g~s~G~~~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~----------a 178 (353)
+++|++|+.+|+|+|++++||++.+ |||+.+++||+|.|++.|+|++.++...++|++++.|||+++ |
T Consensus 134 v~aEL~Gr~~Gc~kGKGGSMHmy~k--~FyGGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA 211 (394)
T KOG0225|consen 134 VLAELMGRQAGCSKGKGGSMHMYAK--NFYGGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMA 211 (394)
T ss_pred HHHHHhccccccccCCCcceeeecc--cccCccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHH
Confidence 9999999999999999999999995 599999999999999999999999999999999999999999 3
Q ss_pred h------hccccccccccccc------ccCcccCCCcccccccccccccccCCCcc-ChhHhhcCHHHHHHHHHcC-CCe
Q psy16520 179 T------MATPFQPQRRNSME------EMGSRPEGLAWVFQPLELTETTIGHHSTS-DDSTAYRSKSEVQEYEINN-NPI 244 (353)
Q Consensus 179 ~------is~~~~~q~~~~~~------~~~~a~rgp~~~~~~~~~~~~r~~~hs~~-D~~~~yr~~~ea~~~~r~~-~Pv 244 (353)
. |++|.||-++.+|. ......||-.+ ||+++.. |+++|+.+.+.|.+|++++ +|+
T Consensus 212 ~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG~yi-----------PGl~VdGmdvlaVr~a~KfA~~~~~~g~GPi 280 (394)
T KOG0225|consen 212 ALWKLPVIFVCENNHYGMGTSAERASASTEYYKRGDYI-----------PGLKVDGMDVLAVREATKFAKKYALEGKGPI 280 (394)
T ss_pred HHhCCCEEEEEccCCCccCcchhhhhcChHHHhccCCC-----------CceEECCcchhhHHHHHHHHHHHHhcCCCCE
Confidence 2 99999999886551 12222355333 5888888 9999999999999999997 999
Q ss_pred ehhHHHHhhccCCCHHHHHHhhccCCCCCccccCCHHHHHHHHhcCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q psy16520 245 LRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQLKKESKQLVLN 324 (353)
Q Consensus 245 ~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~~~~~ddP~~~~~~~l~~~g~~t~~e~~~~~~e~~~~v~~ 324 (353)
++ |.+|||+.|||.+|+.+.||++||+++.+.+.|||..+++.|++.++.|++|+++|+++++++|++
T Consensus 281 lm------------E~~TYRy~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~~late~ELKai~k~irkeVde 348 (394)
T KOG0225|consen 281 LM------------EMDTYRYHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIELGLATEEELKAIDKEIRKEVDE 348 (394)
T ss_pred EE------------EEeeeeecccccCCCCcccchHHHHHHHHhccChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 99 999999999999999899999999999985446999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCHhHHhhccccCCC
Q psy16520 325 SIRISEKKLKPSWKEMFEDVYHEMP 349 (353)
Q Consensus 325 a~~~a~~~~~p~~~~~~~~v~~~~~ 349 (353)
++++|+++|.|++++||+|||...+
T Consensus 349 av~~A~~~p~p~~~eL~~dvy~~~~ 373 (394)
T KOG0225|consen 349 AVAFATASPEPEPSELFTDVYVKGT 373 (394)
T ss_pred HHHHhhcCCCCCHHHHHHHhhccCC
Confidence 9999999999999999999999753
No 5
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=9.6e-58 Score=442.75 Aligned_cols=291 Identities=19% Similarity=0.308 Sum_probs=266.1
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHHHcCCc-cccccCCCchhHHHHHHhcCCCCCeeEecCcchHHHHHcCCCHHHH
Q psy16520 31 NVDNETNIRMYKTMVTLNEMDKVMYESQRQGRI-SFYMTSSGEEGSHVGSAAALDPEDLVYAQYRETGVLMWRGFSVEQM 109 (353)
Q Consensus 31 ~l~~d~l~~~yr~m~~~R~~d~~~~~l~~~Gk~-g~~h~~~G~Ea~~vg~~~al~~~D~v~~~yR~~g~~la~G~~~~~~ 109 (353)
.+++++++.+||.|+++|.||+++.+++++|++ ||+|++.||||++||++.+|+++|+++++||+||++|++|+++..+
T Consensus 16 ~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~ 95 (341)
T CHL00149 16 NINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVPPKNV 95 (341)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCCCHHHH
Confidence 689999999999999999999999999999998 7999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCCCccccccCCCCccccccccccchhhhhhhhcceeeec-------CCcEEEEEeecchhh-----
Q psy16520 110 IDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKK-------NEKVVIVYFGEGAAI----- 177 (353)
Q Consensus 110 ~~~~~g~~~g~s~G~~~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~~~~-------g~~v~~v~~Gdg~~~----- 177 (353)
++++||+++|+|+||++|||+++++.|+++.++++|.++|.|+|++++.++.+ .+.+++|++|||+++
T Consensus 96 ~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~~~ 175 (341)
T CHL00149 96 MAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQFF 175 (341)
T ss_pred HHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhcHHH
Confidence 99999999999999999999999999999999999999999999999987554 478999999999998
Q ss_pred -----hh------hccccccccccccc------ccCcccCCCcccccccccccccccCCCcc----ChhHhhcCHHHHHH
Q psy16520 178 -----VT------MATPFQPQRRNSME------EMGSRPEGLAWVFQPLELTETTIGHHSTS----DDSTAYRSKSEVQE 236 (353)
Q Consensus 178 -----a~------is~~~~~q~~~~~~------~~~~a~rgp~~~~~~~~~~~~r~~~hs~~----D~~~~yr~~~ea~~ 236 (353)
|+ |+++.||+++.++. ....+.++.+| |+++.. |+.++|.+.+++.+
T Consensus 176 Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~------------G~~~~~Vdg~d~~av~~a~~~A~~ 243 (341)
T CHL00149 176 ECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAF------------GLPGIEVDGMDVLAVREVAKEAVE 243 (341)
T ss_pred HHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhC------------CCCEEEEeCCCHHHHHHHHHHHHH
Confidence 22 67777777543220 13345555566 777765 88899999999999
Q ss_pred HHHcC-CCeehhHHHHhhccCCCHHHHHHhhccCCCCCccccCCHHHHHHHHhcCChHHHHHHHHhhcCCCCHHHHHHHH
Q psy16520 237 YEINN-NPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQLK 315 (353)
Q Consensus 237 ~~r~~-~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~~~~~ddP~~~~~~~l~~~g~~t~~e~~~~~ 315 (353)
++|++ +|+++ |+.|||+.|||++|++ .||+++|++.|.++| |+.+|+++|+++|++|++++++++
T Consensus 244 ~ar~~~gP~lI------------ev~tyR~~gHs~~D~~-~YR~~~e~~~~~~~D-Pi~~~~~~L~~~g~~~~~~~~~i~ 309 (341)
T CHL00149 244 RARQGDGPTLI------------EALTYRFRGHSLADPD-ELRSKQEKEAWVARD-PIKKLKSYIIDNELASQKELNKIQ 309 (341)
T ss_pred HHHhCCCCEEE------------EEEEecCCCcCCCCCc-cCCCHHHHHHHhcCC-HHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99987 99999 9999999999999875 599999999999985 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHhHHhhccccC
Q psy16520 316 KESKQLVLNSIRISEKKLKPSWKEMFEDVYHE 347 (353)
Q Consensus 316 ~e~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~ 347 (353)
++++++|++++++|+++|.|+++++|+|||++
T Consensus 310 ~e~~~~v~~a~~~a~~~p~p~~~~~~~~vy~~ 341 (341)
T CHL00149 310 REVKIEIEQAVQFAISSPEPNISDLKKYLFAD 341 (341)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHhhcccC
Confidence 99999999999999999999999999999974
No 6
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=3e-57 Score=435.72 Aligned_cols=287 Identities=27% Similarity=0.417 Sum_probs=264.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHcCCc-cccccCCCchhHHHHHHhcCCCCCeeEecCcchHHHHHcCCCHHHHHHH
Q psy16520 34 NETNIRMYKTMVTLNEMDKVMYESQRQGRI-SFYMTSSGEEGSHVGSAAALDPEDLVYAQYRETGVLMWRGFSVEQMIDQ 112 (353)
Q Consensus 34 ~d~l~~~yr~m~~~R~~d~~~~~l~~~Gk~-g~~h~~~G~Ea~~vg~~~al~~~D~v~~~yR~~g~~la~G~~~~~~~~~ 112 (353)
+|+++.+||.|+++|.||+++.+++++|++ |++|++.|||++++|++.+|+++||++++||+|+++|++|+++.+++++
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~ 80 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE 80 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHH
Confidence 478999999999999999999999999998 6999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCCccccccCCCCccccccccccchhhhhhhhcceeeecCCcEEEEEeecchhh----------hh---
Q psy16520 113 LYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI----------VT--- 179 (353)
Q Consensus 113 ~~g~~~g~s~G~~~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~----------a~--- 179 (353)
++|+++|+|+||++|+|+..++.|+++.++++|.++|.|+|.+++.++.+.+.+++|++|||++. |+
T Consensus 81 ~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~ 160 (315)
T TIGR03182 81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWK 160 (315)
T ss_pred HcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999998888889999999999997 22
Q ss_pred ---hccccccccccccc------ccCcccCCCcccccccccccccccCCCcc----ChhHhhcCHHHHHHHHHcC-CCee
Q psy16520 180 ---MATPFQPQRRNSME------EMGSRPEGLAWVFQPLELTETTIGHHSTS----DDSTAYRSKSEVQEYEINN-NPIL 245 (353)
Q Consensus 180 ---is~~~~~q~~~~~~------~~~~a~rgp~~~~~~~~~~~~r~~~hs~~----D~~~~yr~~~ea~~~~r~~-~Pv~ 245 (353)
|+++.||+++.++. ....+.++.+| |+++.. |+.++|++.+++.+++|++ +|++
T Consensus 161 lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~------------G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~l 228 (315)
T TIGR03182 161 LPVIFVIENNLYAMGTSVERSSSVTDLYKRGESF------------GIPGERVDGMDVLAVREAAKEAVERARSGKGPIL 228 (315)
T ss_pred cCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhC------------CCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEE
Confidence 67777887775431 13344455555 777755 8889999999999999888 9999
Q ss_pred hhHHHHhhccCCCHHHHHHhhccCCCCCccccCCHHHHHHHHhcCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy16520 246 RFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQLKKESKQLVLNS 325 (353)
Q Consensus 246 ~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~~~~~ddP~~~~~~~l~~~g~~t~~e~~~~~~e~~~~v~~a 325 (353)
+ |+.|||+.|||++|++ .||+++|++.|.++| |+.+|+++|+++|++|++++++++++++++|+++
T Consensus 229 I------------e~~t~R~~gHs~~D~~-~Yr~~~e~~~~~~~d-Pi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a 294 (315)
T TIGR03182 229 L------------EMKTYRFRGHSMSDPA-KYRSKEEVEEWRKRD-PIEKLKARLIEQGIASEEELKEIDKEVRAEVEEA 294 (315)
T ss_pred E------------EEeCCcCCCCCCCCcc-ccCCHHHHHHHHhcC-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9 9999999999999876 599999999999985 9999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCHhHHhhcccc
Q psy16520 326 IRISEKKLKPSWKEMFEDVYH 346 (353)
Q Consensus 326 ~~~a~~~~~p~~~~~~~~v~~ 346 (353)
++.|++.|.|+|+++|+|||+
T Consensus 295 ~~~a~~~p~p~~~~~~~~vy~ 315 (315)
T TIGR03182 295 VEFAENSPEPPVEELYTDVYA 315 (315)
T ss_pred HHHHHhCCCCCHHHHHhhccC
Confidence 999999999999999999996
No 7
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=5.2e-56 Score=440.24 Aligned_cols=293 Identities=20% Similarity=0.339 Sum_probs=268.1
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHHHcCCc-cccccCCCchhHHHHHHhcCCCCCeeEecCcchHHHHHcCCCHHHH
Q psy16520 31 NVDNETNIRMYKTMVTLNEMDKVMYESQRQGRI-SFYMTSSGEEGSHVGSAAALDPEDLVYAQYRETGVLMWRGFSVEQM 109 (353)
Q Consensus 31 ~l~~d~l~~~yr~m~~~R~~d~~~~~l~~~Gk~-g~~h~~~G~Ea~~vg~~~al~~~D~v~~~yR~~g~~la~G~~~~~~ 109 (353)
.+++|+++.+||.|+++|.||+++.+++++||+ |++|++.|||++++|++.+|+++|+++++||+|+++|++|+++.++
T Consensus 82 ~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~~~~~~ 161 (433)
T PLN02374 82 LVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPARAV 161 (433)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCCCHHHH
Confidence 668999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCCCccccccCCCCccccccccccchhhhhhhhcceeeec-------CCcEEEEEeecchhh-----
Q psy16520 110 IDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKK-------NEKVVIVYFGEGAAI----- 177 (353)
Q Consensus 110 ~~~~~g~~~g~s~G~~~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~~~~-------g~~v~~v~~Gdg~~~----- 177 (353)
|+|+||+++|+++|+++|||+..++.|+++.++++|.++|.|+|+|++.++.+ .+.+++|++|||+++
T Consensus 162 mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~ 241 (433)
T PLN02374 162 MSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFF 241 (433)
T ss_pred HHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccChHH
Confidence 99999999999999999999999999999999999999999999999988654 378999999999977
Q ss_pred -----hh------hcccccccccccc------cccCcccCCCcccccccccccccccCCCcc----ChhHhhcCHHHHHH
Q psy16520 178 -----VT------MATPFQPQRRNSM------EEMGSRPEGLAWVFQPLELTETTIGHHSTS----DDSTAYRSKSEVQE 236 (353)
Q Consensus 178 -----a~------is~~~~~q~~~~~------~~~~~a~rgp~~~~~~~~~~~~r~~~hs~~----D~~~~yr~~~ea~~ 236 (353)
|+ |+++.||+++.++ ....++.++.+| |+++.. |+.++|++.+++.+
T Consensus 242 EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~------------G~~~~~VDG~D~~av~~a~~~A~~ 309 (433)
T PLN02374 242 ECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAF------------GMPGVHVDGMDVLKVREVAKEAIE 309 (433)
T ss_pred HHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhc------------CCcEEEECCCCHHHHHHHHHHHHH
Confidence 22 7777788755322 113455566666 777765 99999999999999
Q ss_pred HHHcC-CCeehhHHHHhhccCCCHHHHHHhhccCCCCCccccCCHHHHHHHHhcCChHHHHHHHHhhcCCCCHHHHHHHH
Q psy16520 237 YEINN-NPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQLK 315 (353)
Q Consensus 237 ~~r~~-~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~~~~~ddP~~~~~~~l~~~g~~t~~e~~~~~ 315 (353)
++|++ +|+++ |+.|||+.|||++|++ .||+++|++.|.++| |+.+++++|+++|++|++++++++
T Consensus 310 ~Ar~g~gP~LI------------e~~tyR~~GHs~~D~~-~YR~~~e~~~~~~~D-Pi~~~~~~L~~~gi~te~e~~~i~ 375 (433)
T PLN02374 310 RARRGEGPTLV------------ECETYRFRGHSLADPD-ELRDPAEKAHYAARD-PIAALKKYLIENGLATEAELKAIE 375 (433)
T ss_pred HHHHcCCCEEE------------EEEEEecCCcCCCCcc-ccCCHHHHHHHHcCC-cHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99987 99999 9999999999999876 599999999999985 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHhHHhhccccCCC
Q psy16520 316 KESKQLVLNSIRISEKKLKPSWKEMFEDVYHEMP 349 (353)
Q Consensus 316 ~e~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~~~ 349 (353)
++++++|++++++|+++|+|+++++|++||+++.
T Consensus 376 ~~~~~~v~~a~~~A~~~p~P~~~~~~~~vy~~~~ 409 (433)
T PLN02374 376 KKIDEVVEDAVEFADASPLPPRSQLLENVFADPK 409 (433)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHhccccCCc
Confidence 9999999999999999999999999999999753
No 8
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=4e-55 Score=425.08 Aligned_cols=290 Identities=29% Similarity=0.496 Sum_probs=263.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHcCCccccccCCCchhHHHHHHhcCCCCCeeEecCcchHHHHHcCCCHHHH
Q psy16520 30 SNVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVYAQYRETGVLMWRGFSVEQM 109 (353)
Q Consensus 30 ~~l~~d~l~~~yr~m~~~R~~d~~~~~l~~~Gk~g~~h~~~G~Ea~~vg~~~al~~~D~v~~~yR~~g~~la~G~~~~~~ 109 (353)
+.++++.++.+||.|+++|.||+++.+++++|++||+|++.|||++++|++.+|+++|+++++||+||++|++|+++..+
T Consensus 19 ~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~h~~~l~~G~~~~~~ 98 (341)
T TIGR03181 19 PDLSDEELVELYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGSALALRKDDWVFPSYRDHAAMLARGVPLVEI 98 (341)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecccCCCChHHHHHHHHHHcCCCCEEEcchhhHHHHHHcCCCHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCCCCCccccccCCCCccccccccccchhhhhhhhcceeeecCCcEEEEEeecchhh----------hh
Q psy16520 110 IDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI----------VT 179 (353)
Q Consensus 110 ~~~~~g~~~g~s~G~~~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~----------a~ 179 (353)
+++++|+.+|. . + .++.|+++.++++|.++|.|+|.|+|.++.+.+.+++|++|||+++ |+
T Consensus 99 ~ae~~g~~~g~----~----~-~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~ 169 (341)
T TIGR03181 99 LLYWRGDERGS----W----D-PEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAG 169 (341)
T ss_pred HHHhcCcCcCC----C----C-chhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHh
Confidence 99999987653 1 1 3588999999999999999999999999888899999999999998 11
Q ss_pred ------hccccccccccccc------ccCcccCCCcccccccccccccccCCCcc----ChhHhhcCHHHHHHHHHcC-C
Q psy16520 180 ------MATPFQPQRRNSME------EMGSRPEGLAWVFQPLELTETTIGHHSTS----DDSTAYRSKSEVQEYEINN-N 242 (353)
Q Consensus 180 ------is~~~~~q~~~~~~------~~~~a~rgp~~~~~~~~~~~~r~~~hs~~----D~~~~yr~~~ea~~~~r~~-~ 242 (353)
|+++.||++..++. ....+.++.+| |+++.. |+.++|++.+++.+++|++ +
T Consensus 170 ~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~------------G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~g 237 (341)
T TIGR03181 170 VFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAY------------GIPGVQVDGNDVLAVYAVTKEAVERARSGGG 237 (341)
T ss_pred ccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhC------------CCCEEEECCCCHHHHHHHHHHHHHHHHcCCC
Confidence 67777887764321 12334444555 777654 8889999999999999887 9
Q ss_pred CeehhHHHHhhccCCCHHHHHHhhccCCCCCccccCCHHHHHHHHhcCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q psy16520 243 PILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQLKKESKQLV 322 (353)
Q Consensus 243 Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~~~~~ddP~~~~~~~l~~~g~~t~~e~~~~~~e~~~~v 322 (353)
|+++ |+.+||+.|||++|++..||+++|++.|.++| |+.+|+++|+++|++|++++++++++++++|
T Consensus 238 P~lI------------ev~t~R~~gH~~~D~~~~YR~~~e~~~~~~~D-pi~~~~~~L~~~g~~~~~e~~~i~~~~~~~v 304 (341)
T TIGR03181 238 PTLI------------EAVTYRLGPHTTADDPTRYRTKEEEEEWRKKD-PILRLRKYLERKGLWDEEQEEALEEEAEAEV 304 (341)
T ss_pred CEEE------------EEEeecCCCCCCCCCCccCCCHHHHHHHhcCC-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 9999 99999999999999988999999999999985 9999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCHhHHhhccccCCCCCCC
Q psy16520 323 LNSIRISEKKLKPSWKEMFEDVYHEMPPHIR 353 (353)
Q Consensus 323 ~~a~~~a~~~~~p~~~~~~~~v~~~~~~~~~ 353 (353)
++++++|+++|+|+++++|+|||+++||||+
T Consensus 305 ~~a~~~a~~~p~P~~~~~~~~vy~~~~~~~~ 335 (341)
T TIGR03181 305 AEAVAEALALPPPPVDDIFDHVYAELPPELE 335 (341)
T ss_pred HHHHHHHHhCCCCCHHHHHhhcccCCCHHHH
Confidence 9999999999999999999999999999985
No 9
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=1.6e-52 Score=400.34 Aligned_cols=273 Identities=30% Similarity=0.482 Sum_probs=239.9
Q ss_pred HHHHHHHHhHHHHHHHHHHcCCccccccCCCchhHHHHHHhcCCCCCeeEecCcchHHHHHcCCCHHHHHHHhhcCCCCC
Q psy16520 41 YKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAAALDPEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSS 120 (353)
Q Consensus 41 yr~m~~~R~~d~~~~~l~~~Gk~g~~h~~~G~Ea~~vg~~~al~~~D~v~~~yR~~g~~la~G~~~~~~~~~~~g~~~g~ 120 (353)
||.|++.|..|.++..+.++|+.|++|++.|||++++|++.+|+++|+++++||+|+++|++|+++.+++++++|+..+.
T Consensus 1 y~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~ 80 (300)
T PF00676_consen 1 YRMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKGH 80 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTST
T ss_pred CchHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccCC
Confidence 67788888888888888899999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCCccccccCCCCccccccccccchhhhhhhhcceeeecCCcEEEEEeecchhh----------hh------hcccc
Q psy16520 121 DKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI----------VT------MATPF 184 (353)
Q Consensus 121 s~G~~~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~----------a~------is~~~ 184 (353)
++|++ |+|+..+++|+++.++++|.|.|+++|.|++.|..+.+.|++|++|||+++ |+ |+++.
T Consensus 81 ~g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvve 159 (300)
T PF00676_consen 81 GGGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVE 159 (300)
T ss_dssp TTTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CCCcc-ccccccccceeeeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEe
Confidence 99999 999999889999999999999999999999999999999999999999988 22 66666
Q ss_pred cccccccc------cccCcccCCCcccccccccccccccCCCcc----ChhHhhcCHHHHHHHHHcC-CCeehhHHHHhh
Q psy16520 185 QPQRRNSM------EEMGSRPEGLAWVFQPLELTETTIGHHSTS----DDSTAYRSKSEVQEYEINN-NPILRFKTLLFK 253 (353)
Q Consensus 185 ~~q~~~~~------~~~~~a~rgp~~~~~~~~~~~~r~~~hs~~----D~~~~yr~~~ea~~~~r~~-~Pv~~~~~~l~~ 253 (353)
|||++.++ ....++.++.+| |+++.. |+.+||++.++|.+++|++ +|+++
T Consensus 160 NN~~aist~~~~~~~~~~~~~~a~~~------------gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~li------- 220 (300)
T PF00676_consen 160 NNQYAISTPTEEQTASPDIADRAKGY------------GIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLI------- 220 (300)
T ss_dssp EESEETTEEHHHHCSSSTSGGGGGGT------------TSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEE-------
T ss_pred cCCcccccCccccccccchhhhhhcc------------CCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEE-------
Confidence 66666554 125667788888 888776 9999999999999999998 99999
Q ss_pred ccCCCHHHHHHhhccCCCCCccccCCHHHHHHHHhcCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy16520 254 KKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQLKKESKQLVLNSIRISEKKL 333 (353)
Q Consensus 254 ~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~~~~~ddP~~~~~~~l~~~g~~t~~e~~~~~~e~~~~v~~a~~~a~~~~ 333 (353)
|+.|||+.|||++||++.||+++|++.|.++.||+.+++++|++.|++|++++++|+++++++|++++++|+++|
T Consensus 221 -----e~~tyR~~gHs~~Dd~~~yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~e~~~~v~~a~~~a~~~p 295 (300)
T PF00676_consen 221 -----EAVTYRLRGHSESDDPTFYRSPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIEAEIKAEVEEAVEFAEASP 295 (300)
T ss_dssp -----EEEE--SS-SSTTSCGGGTSHHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred -----EEeeccCCCCCCCCCccccCCHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999998888887766646999999999999999999999999999999999999999999
Q ss_pred CCCHh
Q psy16520 334 KPSWK 338 (353)
Q Consensus 334 ~p~~~ 338 (353)
.|+||
T Consensus 296 ~p~~e 300 (300)
T PF00676_consen 296 EPDPE 300 (300)
T ss_dssp BC-G-
T ss_pred CCCCC
Confidence 99986
No 10
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=3.3e-50 Score=383.73 Aligned_cols=265 Identities=31% Similarity=0.509 Sum_probs=240.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHcCCcc-ccccCCCchhHHHHHHhcCCCCCeeEecCcchHHHHHcCCCHHHHHHHhhcCCC
Q psy16520 40 MYKTMVTLNEMDKVMYESQRQGRIS-FYMTSSGEEGSHVGSAAALDPEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIG 118 (353)
Q Consensus 40 ~yr~m~~~R~~d~~~~~l~~~Gk~g-~~h~~~G~Ea~~vg~~~al~~~D~v~~~yR~~g~~la~G~~~~~~~~~~~g~~~ 118 (353)
+||.|+++|.||+++.+++++||+. |+|++.|||++++|++.+|+++|+++++||+|+++|++|+++.+++++++|+++
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~ 80 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 5999999999999999999999996 599999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccCCCCccccccccccchhhhhhhhcceeeecCCcEEEEEeecchhh----------hh------hcc
Q psy16520 119 SSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI----------VT------MAT 182 (353)
Q Consensus 119 g~s~G~~~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~----------a~------is~ 182 (353)
|+++|+++|+|+..++.|+++.++++|.++|.|+|.|++.++.+.+.+++|++|||++. |+ |++
T Consensus 81 g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~v 160 (293)
T cd02000 81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFV 160 (293)
T ss_pred CCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999999999999999999999888889999999999997 21 677
Q ss_pred ccccccccccc------ccCcccCCCcccccccccccccccCCCcc----ChhHhhcCHHHHHHHHHcC-CCeehhHHHH
Q psy16520 183 PFQPQRRNSME------EMGSRPEGLAWVFQPLELTETTIGHHSTS----DDSTAYRSKSEVQEYEINN-NPILRFKTLL 251 (353)
Q Consensus 183 ~~~~q~~~~~~------~~~~a~rgp~~~~~~~~~~~~r~~~hs~~----D~~~~yr~~~ea~~~~r~~-~Pv~~~~~~l 251 (353)
..||+++.++. ....+.++.+| |+++.. |+.++|++.+++.+++|++ +|+++
T Consensus 161 v~NN~~~i~~~~~~~~~~~~~~~~a~a~------------G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lI----- 223 (293)
T cd02000 161 CENNGYAISTPTSRQTAGTSIADRAAAY------------GIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLI----- 223 (293)
T ss_pred EeeCCeeccCCHHHHhCCccHHHHHHhC------------CCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEE-----
Confidence 77777765321 12233344444 676644 7889999999999999887 99999
Q ss_pred hhccCCCHHHHHHhhccCCCCCccccCCHHHHHHHHhcCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy16520 252 FKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEKQDEQLKKESKQLVLNSIRIS 329 (353)
Q Consensus 252 ~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~~~~~ddP~~~~~~~l~~~g~~t~~e~~~~~~e~~~~v~~a~~~a 329 (353)
|+.++|+.|||++||+..||+++|+++|.++| |+.+|+++|+++|++|++++++++++++++|++++++|
T Consensus 224 -------ev~~~r~~gHs~~dd~~~Yr~~~e~~~~~~~d-pi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a 293 (293)
T cd02000 224 -------EAVTYRLGGHSTSDDPSRYRTKEEVEEWKKRD-PILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA 293 (293)
T ss_pred -------EEEEeccCCCCCCCCcccCCCHHHHHHHhcCC-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999885 99999999999999999999999999999999999865
No 11
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=1.8e-38 Score=337.26 Aligned_cols=280 Identities=11% Similarity=0.079 Sum_probs=237.9
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHHHcCCccccccCCCchhHHHHHHh------cCCCCCeeEe-cCcchHHHHH--
Q psy16520 31 NVDNETNIRMYKTMVTLNEMDKVMYESQRQGRISFYMTSSGEEGSHVGSAA------ALDPEDLVYA-QYRETGVLMW-- 101 (353)
Q Consensus 31 ~l~~d~l~~~yr~m~~~R~~d~~~~~l~~~Gk~g~~h~~~G~Ea~~vg~~~------al~~~D~v~~-~yR~~g~~la-- 101 (353)
.+++++++.+|+.|+.+|.||+++..+|..+|.. ++.|||++++|+.. +++++|++++ +||||+++|+
T Consensus 185 ~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf---~~eG~Ea~i~gl~~li~~a~~lg~~D~vigmaHRgrlnvLa~v 261 (924)
T PRK09404 185 SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRF---SLEGGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNV 261 (924)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc---cccchhhHHHHHHHHHHHHHhCCCCCEEEecCcCchHHHHHHh
Confidence 6688999999999999999999999999877732 68999999999887 6778999999 6999999998
Q ss_pred cCCCHHHHHHHhhcCC-------CCCCC----------CCCCccccccCCCCccccccccccchhhhhhhhcceeeecCC
Q psy16520 102 RGFSVEQMIDQLYGNI-------GSSDK----------GKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNE 164 (353)
Q Consensus 102 ~G~~~~~~~~~~~g~~-------~g~s~----------G~~~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~~~~g~ 164 (353)
+|++++.+|+|++|++ +|.++ |++++||+.... | .++++.+.|+++|.|+|.++.+++
T Consensus 262 ~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~-n----pShleav~Pva~G~A~A~q~~~~~ 336 (924)
T PRK09404 262 LGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAF-N----PSHLEIVNPVVEGSVRARQDRRGD 336 (924)
T ss_pred cCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccC-C----ccccccccCeehhHHHHHHHhcCC
Confidence 5999999999999987 33333 566777776643 2 489999999999999999866666
Q ss_pred ------cEEEEEeecchhh-----------h---------hhccccccccccccc------ccCcccCCCcccccccccc
Q psy16520 165 ------KVVIVYFGEGAAI-----------V---------TMATPFQPQRRNSME------EMGSRPEGLAWVFQPLELT 212 (353)
Q Consensus 165 ------~v~~v~~Gdg~~~-----------a---------~is~~~~~q~~~~~~------~~~~a~rgp~~~~~~~~~~ 212 (353)
.|+++++|||+++ | +|+++.|||++.||. ....+.++.+|
T Consensus 337 ~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s~~~~sd~Ak~~-------- 408 (924)
T PRK09404 337 GQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAKMV-------- 408 (924)
T ss_pred cccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhccchhHHHHHeec--------
Confidence 7999999999973 2 288999999998772 11224455566
Q ss_pred cccccCCCcc----ChhHhhcCHHHHHHHHHcC-CCeehhHHHHhhccCCCHHHHHHhhccCCCCCccccCCHHHHHHHH
Q psy16520 213 ETTIGHHSTS----DDSTAYRSKSEVQEYEINN-NPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYE 287 (353)
Q Consensus 213 ~~r~~~hs~~----D~~~~yr~~~ea~~~~r~~-~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~~~ 287 (353)
++++.. |+.+||++.++|.+++|++ +|+++ |+.|||++|||++|++. ||++++++.|.
T Consensus 409 ----giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlI------------E~~tYR~~GHne~D~p~-yr~p~ey~~~~ 471 (924)
T PRK09404 409 ----QAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVI------------DLVCYRRHGHNEGDEPS-FTQPLMYKKIK 471 (924)
T ss_pred ----CCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEE------------EEEEecCCCCCCCCCCc-CCCHHHHHHHH
Confidence 666654 9999999999999999998 99999 99999999999999886 99999999998
Q ss_pred hcCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHhHHhhcccc
Q psy16520 288 INNNPILRFKTLLFKKKLWSEKQDEQLKKESKQLVLNSIRISEKKLKPSWKEMFEDVYH 346 (353)
Q Consensus 288 ~~ddP~~~~~~~l~~~g~~t~~e~~~~~~e~~~~v~~a~~~a~~~~~p~~~~~~~~v~~ 346 (353)
+++||+.+|+++|+++|++|++++++|+++++++|++++++|++. .+.+.+..+|.
T Consensus 472 ~~~dpi~~~~~~Li~~G~lt~~e~~~i~~~~~~~v~~a~~~A~~~---~~~~~~~~~~~ 527 (924)
T PRK09404 472 KHPTTRELYADKLVAEGVITEEEADEMVNEYRDALDAGFEVVKEW---RPADWLAGDWS 527 (924)
T ss_pred hcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc---Ccccccccccc
Confidence 755699999999999999999999999999999999999999876 24445555553
No 12
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.7e-37 Score=297.99 Aligned_cols=262 Identities=25% Similarity=0.302 Sum_probs=207.1
Q ss_pred cccCCccchhccccc-cccCCCCCCccCC----CCC-H-HHHHHHHHHHHH--HHhHH--HHHHHHH------HcCCccc
Q psy16520 3 IENASGPCFKKERLG-RYSGSNGQSSHLS----NVD-N-ETNIRMYKTMVT--LNEMD--KVMYESQ------RQGRISF 65 (353)
Q Consensus 3 ~e~~~~~~~~~g~~~-~~~~~~Gqea~~~----~l~-~-d~l~~~yr~m~~--~R~~d--~~~~~l~------~~Gk~g~ 65 (353)
+|+++..+||||+|+ |||++.||||.++ +|. . |++++.||++.+ .++++ ..|++++ ++||.++
T Consensus 42 fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~i~~~YR~h~~~l~~G~~~~~~~a~~~G~~~g~~kGr~~~ 121 (358)
T COG1071 42 FDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDWIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGS 121 (358)
T ss_pred HHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCCEeecccCccccceecCCCHHHHHHHHhccccCCCCCCCCc
Confidence 688999999999996 9999999999876 665 5 999999999854 46665 4566665 5689899
Q ss_pred cccC------C-------CchhHHHHHHhcCCCCCeeEecCcchHHHHHcCCCHHHHHHHhhcCCCCCCCC---------
Q psy16520 66 YMTS------S-------GEEGSHVGSAAALDPEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKG--------- 123 (353)
Q Consensus 66 ~h~~------~-------G~Ea~~vg~~~al~~~D~v~~~yR~~g~~la~G~~~~~~~~~~~g~~~g~s~G--------- 123 (353)
||.+ . +|-..++|++.+++ ||+. ...++..|+++|++++|
T Consensus 122 ~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k--------~~~~----------~~~Va~~~~GDGat~qG~FhEalN~A 183 (358)
T COG1071 122 MHYSDKEKGFLGGSGIVGTQIPLAAGAALALK--------YRGT----------KDGVAVAFFGDGATNQGDFHEALNFA 183 (358)
T ss_pred ccccccccccCCCCceecccccHHHHHHHHHH--------HhCC----------CCcEEEEEecCCccccchHHHHHHHH
Confidence 9964 1 35566667776666 4431 11266667778888888
Q ss_pred --CCCccccccCCCCccccccccccchhh---h-hhhhccee--eecCCcEEEEEeecchhhhhhccccccccccccccc
Q psy16520 124 --KQMPVHYGSRQHHFVTISSPLATQLPQ---A-VGSAYAYK--LKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEM 195 (353)
Q Consensus 124 --~~~p~h~~~~e~n~~~~ss~vg~q~~~---a-~G~A~g~~--~~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~ 195 (353)
|++|++|+| +||.|+||+|...|... + +|.+||++ ++||+||.+|+.+...+. ++
T Consensus 184 ~v~klPvvf~i-eNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~----------------e~ 246 (358)
T COG1071 184 AVWKLPVVFVI-ENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAV----------------ER 246 (358)
T ss_pred HHhcCCEEEEE-ecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHHHHHHH----------------HH
Confidence 999999999 99999999998866643 4 89999998 899999999999998887 68
Q ss_pred CcccCCCcccccccccccccccCCCccChhHhhcCHHHHHHHHHcCCCeehhHHHHhhccCCCHHHHHHhhccCCCCCcc
Q psy16520 196 GSRPEGLAWVFQPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDST 275 (353)
Q Consensus 196 ~~a~rgp~~~~~~~~~~~~r~~~hs~~D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~ 275 (353)
+|++.||.+ ||+.|||++.||.+|+...||+++|..+|. ++||+.+||++|+++|+|||++...+.. +
T Consensus 247 AR~g~GPtL----IE~~tYR~~~HS~sDd~~~YRskeE~~~~~-~~DPi~r~~~~L~~~g~~see~~~~i~~-------e 314 (358)
T COG1071 247 ARAGEGPTL----IEAVTYRYGGHSTSDDPSKYRSKEEVEEWK-KRDPIVRLRKYLIEAGILSEEELEAIEA-------E 314 (358)
T ss_pred HHcCCCCEE----EEEEEeecCCCCCCCCccccCCHHHHHHHh-ccChHHHHHHHHHHcCCCCHHHHHHHHH-------H
Confidence 999999999 999999999999998889999999999996 6899999999999999999999999852 2
Q ss_pred ccCCHHH-HHHHHhc--CChHHHHHHHHhhcCCCCHHHH
Q psy16520 276 AYRSKSE-VQEYEIN--NNPILRFKTLLFKKKLWSEKQD 311 (353)
Q Consensus 276 ~yr~~~e-~~~~~~~--ddP~~~~~~~l~~~g~~t~~e~ 311 (353)
.....++ ++..... ++|...|.++|.+.-.-..+|.
T Consensus 315 ~~~~V~ea~e~a~~~p~P~~~~~~~~Vy~~~~~~l~~q~ 353 (358)
T COG1071 315 AKAEVDEAVEFAEASPYPDVSELFEDVYAEGPPHLEEQR 353 (358)
T ss_pred HHHHHHHHHHHHHhCCCCChhHhhhcccccCChhHHHHH
Confidence 1112222 2222222 3688899999987643333333
No 13
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=99.98 E-value=5.9e-32 Score=286.44 Aligned_cols=277 Identities=13% Similarity=0.080 Sum_probs=229.6
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHH-HcCCccccccCCCchhHHHHH------HhcCCCCCeeEec-CcchHHHHH-
Q psy16520 31 NVDNETNIRMYKTMVTLNEMDKVMYESQ-RQGRISFYMTSSGEEGSHVGS------AAALDPEDLVYAQ-YRETGVLMW- 101 (353)
Q Consensus 31 ~l~~d~l~~~yr~m~~~R~~d~~~~~l~-~~Gk~g~~h~~~G~Ea~~vg~------~~al~~~D~v~~~-yR~~g~~la- 101 (353)
.+++++...+++.+..+-.||.++...| .+.| .+.-|.|+...++ +...+..|++++. |||+.+.|+
T Consensus 185 ~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~KR----FslEG~eslip~l~~~i~~~~~~gv~d~v~gmaHRGRlnvL~n 260 (929)
T TIGR00239 185 QFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKR----FSLEGLDALVPMLKEIIRHSVNSGTRDVVLGMAHRGRLNVLVN 260 (929)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCce----eecccHHHHHHHHHHHHHHHHHcCCCeEEeccccCCcHHHHHH
Confidence 6688999999999999999999999887 3333 2445667664332 3456678999997 999999999
Q ss_pred -cCCCHHHHHHHhhcCCCC-CCCCCCCc-ccccc-----------CCCCccccccccccchhhhhhhhcceeeecC----
Q psy16520 102 -RGFSVEQMIDQLYGNIGS-SDKGKQMP-VHYGS-----------RQHHFVTISSPLATQLPQAVGSAYAYKLKKN---- 163 (353)
Q Consensus 102 -~G~~~~~~~~~~~g~~~g-~s~G~~~p-~h~~~-----------~e~n~~~~ss~vg~q~~~a~G~A~g~~~~~g---- 163 (353)
+|.+++.+++++.|+..+ .+.|++.. .|+.. ...++.+++|+++.+.|++.|.|+|.+..++
T Consensus 261 v~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~~npSHLeav~Pva~G~ArA~q~~~~~~~~ 340 (929)
T TIGR00239 261 VLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSPVVIGSTRARLDRLNDSPE 340 (929)
T ss_pred HhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCcceeeecCCCcccccccchhhhHHHHHHHhcCCccc
Confidence 999999999999998765 34576655 88883 3456789999999999999999999985444
Q ss_pred --CcEEEEEeecchh-h----------h---------hhccccccccccccc------ccCcccCCCccccccccccccc
Q psy16520 164 --EKVVIVYFGEGAA-I----------V---------TMATPFQPQRRNSME------EMGSRPEGLAWVFQPLELTETT 215 (353)
Q Consensus 164 --~~v~~v~~Gdg~~-~----------a---------~is~~~~~q~~~~~~------~~~~a~rgp~~~~~~~~~~~~r 215 (353)
+.|++|++|||++ + | +|+++.|||++.||. ....+.++.+|
T Consensus 341 ~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~~sd~Ak~y----------- 409 (929)
T TIGR00239 341 STKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAKMI----------- 409 (929)
T ss_pred ccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccCHHHHheec-----------
Confidence 6799999999996 3 1 288899999998772 12234456666
Q ss_pred ccCCCcc----ChhHhhcCHHHHHHHHHcC-CCeehhHHHHhhccCCCHHHHHHhhccCCCCCccccCCHHHHHHHHhcC
Q psy16520 216 IGHHSTS----DDSTAYRSKSEVQEYEINN-NPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINN 290 (353)
Q Consensus 216 ~~~hs~~----D~~~~yr~~~ea~~~~r~~-~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~~~~~d 290 (353)
++++.. |+.+||++.++|.+++|++ +|+++ |+.|||++|||++|++..||+ ++++.|.+++
T Consensus 410 -giP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlI------------E~~tYR~~GHne~D~p~~yrp-~~~~~i~~~~ 475 (929)
T TIGR00239 410 -QAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFI------------DLVGYRRHGHNEADEPSATQP-LMYQKIKKHP 475 (929)
T ss_pred -CCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEE------------EEEeccCCCCCCCCCCccCCH-HHHHHHHhCC
Confidence 666654 9999999999999999998 99999 999999999999999988998 7778777644
Q ss_pred ChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy16520 291 NPILRFKTLLFKKKLWSEKQDEQLKKESKQLVLNSIRISEKKLKPS 336 (353)
Q Consensus 291 dP~~~~~~~l~~~g~~t~~e~~~~~~e~~~~v~~a~~~a~~~~~p~ 336 (353)
||+.+|+++|+++|++|++++++++++++++|+++++.+...+.|.
T Consensus 476 dPi~~~~~~Li~~Gv~te~e~~~i~~~~~~~v~~a~~~~~~~~~~~ 521 (929)
T TIGR00239 476 TPRKVYADKLVSEGVATEEDVTEMVNLYRDALEAADCVVPSWREMN 521 (929)
T ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhccCCcc
Confidence 6999999999999999999999999999999999999998766544
No 14
>KOG0225|consensus
Probab=99.97 E-value=2.7e-34 Score=267.68 Aligned_cols=255 Identities=21% Similarity=0.271 Sum_probs=200.5
Q ss_pred cccCCccchhcccc-ccccCCCCCCccCC----CCC-HHHHHHHHHHHHH--HHhHH--HHHHHHH------HcCCcccc
Q psy16520 3 IENASGPCFKKERL-GRYSGSNGQSSHLS----NVD-NETNIRMYKTMVT--LNEMD--KVMYESQ------RQGRISFY 66 (353)
Q Consensus 3 ~e~~~~~~~~~g~~-~~~~~~~Gqea~~~----~l~-~d~l~~~yr~m~~--~R~~d--~~~~~l~------~~Gk~g~~ 66 (353)
||..+.++|++++| ||+|+++||||+.+ +++ .|.+++.||+|.. .|++. +.|++|+ ++||+|+|
T Consensus 74 mE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~~~v~aEL~Gr~~Gc~kGKGGSM 153 (394)
T KOG0225|consen 74 MELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSVREVLAELMGRQAGCSKGKGGSM 153 (394)
T ss_pred HHHHHHHHHhhhhhceeeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCccHHHHHHHHhccccccccCCCcce
Confidence 68889999999999 99999999999887 565 5899999999864 35554 6788887 67999999
Q ss_pred ccC----CCchhHHHHHHhcCCCCCeeEecCcchHHHHHcCCCHHHHHHHhhcCCCCCCCC-----------CCCccccc
Q psy16520 67 MTS----SGEEGSHVGSAAALDPEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKG-----------KQMPVHYG 131 (353)
Q Consensus 67 h~~----~G~Ea~~vg~~~al~~~D~v~~~yR~~g~~la~G~~~~~~~~~~~g~~~g~s~G-----------~~~p~h~~ 131 (353)
|++ +|..++ ||+...|+.|-.+...||. ++.+...|-++|..++| |+||++|+
T Consensus 154 Hmy~k~FyGGnGI-VGAQiPLGaGia~A~kY~~-----------~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFv 221 (394)
T KOG0225|consen 154 HMYAKNFYGGNGI-VGAQIPLGAGIAFAQKYNR-----------EDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFV 221 (394)
T ss_pred eeecccccCccce-eccCCCccccHHHHHHhcc-----------CCceEEEEeccccccchhHHHHhhHHHHhCCCEEEE
Confidence 987 566666 6666667655555555664 22344444446777777 99999999
Q ss_pred cCCCCccccccccccchhh----hhhhhccee--eecCCcEEEEEeecchhhhhhcccccccccccccccCcccCCCccc
Q psy16520 132 SRQHHFVTISSPLATQLPQ----AVGSAYAYK--LKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLAWV 205 (353)
Q Consensus 132 ~~e~n~~~~ss~vg~q~~~----a~G~A~g~~--~~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~~a~rgp~~~ 205 (353)
| |||.|++.++..+..+. -+|-. ++ .+||+||+.|...-.-+. ++++.++||.+
T Consensus 222 C-ENN~yGMGTs~~Rasa~teyykRG~y--iPGl~VdGmdvlaVr~a~KfA~----------------~~~~~g~GPil- 281 (394)
T KOG0225|consen 222 C-ENNHYGMGTSAERASASTEYYKRGDY--IPGLKVDGMDVLAVREATKFAK----------------KYALEGKGPIL- 281 (394)
T ss_pred E-ccCCCccCcchhhhhcChHHHhccCC--CCceEECCcchhhHHHHHHHHH----------------HHHhcCCCCEE-
Confidence 9 99999999998876653 36733 55 899999999988765554 48899999999
Q ss_pred ccccccccccccCCCccChhHhhcCHHHHHHHHHcCCCeehhHHHHhhccCCCHHHHHHhhccCCCCCccccCCHHHHHH
Q psy16520 206 FQPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQE 285 (353)
Q Consensus 206 ~~~~~~~~~r~~~hs~~D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~ 285 (353)
+|+.|||+++||.+||...||+.+|+++-+.++|||..|+++|++.++.+|+++..+.. +..+|+++
T Consensus 282 ---mE~~TYRy~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~~late~ELKai~k----------~irkeVde 348 (394)
T KOG0225|consen 282 ---MEMDTYRYHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIELGLATEEELKAIDK----------EIRKEVDE 348 (394)
T ss_pred ---EEEeeeeecccccCCCCcccchHHHHHHHHhccChHHHHHHHHHHhcccCHHHHHHHHH----------HHHHHHHH
Confidence 99999999999999999999999999877434599999999999999999999998841 22334433
Q ss_pred ---HHhcC---ChHHHHHHHHhh
Q psy16520 286 ---YEINN---NPILRFKTLLFK 302 (353)
Q Consensus 286 ---~~~~d---dP~~~~~~~l~~ 302 (353)
.++.+ +|..++.++|.+
T Consensus 349 av~~A~~~p~p~~~eL~~dvy~~ 371 (394)
T KOG0225|consen 349 AVAFATASPEPEPSELFTDVYVK 371 (394)
T ss_pred HHHHhhcCCCCCHHHHHHHhhcc
Confidence 33322 577788888874
No 15
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=99.94 E-value=4.9e-28 Score=225.57 Aligned_cols=202 Identities=15% Similarity=0.160 Sum_probs=167.4
Q ss_pred HHHHHHHHHH-cCCccccccCCCchhHHHHHHhcCCC------CCeeEec-CcchHHHHH--cCCCHHHHHHHhhcCCC-
Q psy16520 50 MDKVMYESQR-QGRISFYMTSSGEEGSHVGSAAALDP------EDLVYAQ-YRETGVLMW--RGFSVEQMIDQLYGNIG- 118 (353)
Q Consensus 50 ~d~~~~~l~~-~Gk~g~~h~~~G~Ea~~vg~~~al~~------~D~v~~~-yR~~g~~la--~G~~~~~~~~~~~g~~~- 118 (353)
||+++...|- +++ + +..|+|++++++...+++ .|++++. |||+.++|+ +|++++++++|++|+.+
T Consensus 1 ~e~f~~~~f~~~kr---f-s~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~ 76 (265)
T cd02016 1 FEQFLATKFPGQKR---F-GLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEF 76 (265)
T ss_pred ChhhHHHhcCCCeE---E-EecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCC
Confidence 3555555552 222 2 489999999999988887 7999998 999999999 99999999999999876
Q ss_pred --CCCCCCCCccccccCC-----------CCccccccccccchhhhhhhhcceeeec-----CCcEEEEEeecchhh---
Q psy16520 119 --SSDKGKQMPVHYGSRQ-----------HHFVTISSPLATQLPQAVGSAYAYKLKK-----NEKVVIVYFGEGAAI--- 177 (353)
Q Consensus 119 --g~s~G~~~p~h~~~~e-----------~n~~~~ss~vg~q~~~a~G~A~g~~~~~-----g~~v~~v~~Gdg~~~--- 177 (353)
+.+.|++++.|+..+. .++.+.+|+++.|.|+++|+|+|.++.+ .+.|+++++|||+++
T Consensus 77 ~~~~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG 156 (265)
T cd02016 77 PEDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQG 156 (265)
T ss_pred CCCCCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCC
Confidence 5567899999998865 4678999999999999999999999766 378999999999953
Q ss_pred --------h---------hhccccccccccccc------ccCcccCCCcccccccccccccccCCCcc----ChhHhhcC
Q psy16520 178 --------V---------TMATPFQPQRRNSME------EMGSRPEGLAWVFQPLELTETTIGHHSTS----DDSTAYRS 230 (353)
Q Consensus 178 --------a---------~is~~~~~q~~~~~~------~~~~a~rgp~~~~~~~~~~~~r~~~hs~~----D~~~~yr~ 230 (353)
| +|+++.|||++.|+. ....+.++.+| ++++.. |+.+||++
T Consensus 157 ~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~------------gip~~~VdG~D~~aV~~a 224 (265)
T cd02016 157 VVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMI------------GAPIFHVNGDDPEAVVRA 224 (265)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeec------------CCCEEEEcCCCHHHHHHH
Confidence 1 278888899888762 12345566666 777755 99999999
Q ss_pred HHHHHHHHHcC-CCeehhHHHHhhccCCCHHHHHHhhccCCCCCccccCCH
Q psy16520 231 KSEVQEYEINN-NPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSK 280 (353)
Q Consensus 231 ~~ea~~~~r~~-~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~ 280 (353)
.++|.+++|++ +|+++ |+.|||++|||++|++. |+++
T Consensus 225 ~~~A~~~~r~g~gp~lI------------e~~tYR~~GHse~D~p~-~t~p 262 (265)
T cd02016 225 TRLALEYRQKFKKDVVI------------DLVCYRRHGHNELDEPS-FTQP 262 (265)
T ss_pred HHHHHHHHHhcCCCEEE------------EEEEecCCCCCCcCCcc-ccCC
Confidence 99999999998 99999 99999999999999876 5543
No 16
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=99.94 E-value=1.5e-29 Score=246.82 Aligned_cols=249 Identities=19% Similarity=0.211 Sum_probs=186.2
Q ss_pred cccCCccchhcccc-ccccCCCCCCccCC----CC-CHHHHHHHHHHHH--HHHhHH--HHHHHHH------HcCCcccc
Q psy16520 3 IENASGPCFKKERL-GRYSGSNGQSSHLS----NV-DNETNIRMYKTMV--TLNEMD--KVMYESQ------RQGRISFY 66 (353)
Q Consensus 3 ~e~~~~~~~~~g~~-~~~~~~~Gqea~~~----~l-~~d~l~~~yr~m~--~~R~~d--~~~~~l~------~~Gk~g~~ 66 (353)
+|+++..+|+||+| |+||++.||||+++ +| +.|++.+.||+|. ++|+++ ..|.+++ +.||+|+|
T Consensus 45 ~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~~~~~~~ae~~g~~~g~~~Grggsm 124 (362)
T PLN02269 45 MEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGGTVLEVFAELMGRKDGCSRGKGGSM 124 (362)
T ss_pred HHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCcc
Confidence 68899999999999 69999999999876 66 5799999999975 567775 5677776 56888999
Q ss_pred ccCC-------------CchhHHHHHHhcCCCCCeeEecCcchHHHHHcCCCHHHHHHHhhcCCCCCCCC----------
Q psy16520 67 MTSS-------------GEEGSHVGSAAALDPEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKG---------- 123 (353)
Q Consensus 67 h~~~-------------G~Ea~~vg~~~al~~~D~v~~~yR~~g~~la~G~~~~~~~~~~~g~~~g~s~G---------- 123 (353)
|.+. +|-++++|++.+++ |++ .+.+..++.+++.+++|
T Consensus 125 H~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k--------~~~-----------~~~v~v~~~GDGa~~eG~~~Ealn~A~ 185 (362)
T PLN02269 125 HFYKKDANFYGGHGIVGAQVPLGAGLAFAQK--------YNK-----------EENVAFALYGDGAANQGQLFEALNIAA 185 (362)
T ss_pred cccchhcCccccCchhhccccHHHHHHHHHH--------HhC-----------CCCeEEEEECCCCcccCHHHHHHHHhh
Confidence 9753 13344455555544 111 12233344445555555
Q ss_pred -CCCccccccCCCCccccccccccchhhh--hhhhcce--eeecCCcEEEEEeecchhhhhhcccccccccccccccCcc
Q psy16520 124 -KQMPVHYGSRQHHFVTISSPLATQLPQA--VGSAYAY--KLKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGSR 198 (353)
Q Consensus 124 -~~~p~h~~~~e~n~~~~ss~vg~q~~~a--~G~A~g~--~~~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~~a 198 (353)
|++|++|+| +||.|+++++...|.+.. ...++++ ..+||+|+..|+.....+. +..+.
T Consensus 186 ~~~lPvvfvv-eNN~~aist~~~~~~~~~~~~~~~~~~p~~~VDG~D~~av~~a~~~A~----------------~~aR~ 248 (362)
T PLN02269 186 LWDLPVIFVC-ENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAK----------------EHALS 248 (362)
T ss_pred ccCcCEEEEE-eCCCEeccCchhhhccchHHHHhhcCCCeEEECCCCHHHHHHHHHHHH----------------HHHHh
Confidence 899999999 999999999988776532 1223445 4899999999998887765 36677
Q ss_pred cCCCcccccccccccccccCCCccChhHhhcCHHHHHHHHHcCCCeehhHHHHhhccCCCHHHHHHhhccCCCCCccccC
Q psy16520 199 PEGLAWVFQPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYR 278 (353)
Q Consensus 199 ~rgp~~~~~~~~~~~~r~~~hs~~D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr 278 (353)
++|.+ |++.|||++.|+.+|+...||+.+|...|..++||+.+|+++|+++|+|++.+...+..- +
T Consensus 249 -~gP~l----Ie~~tyR~~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te~e~~~i~~e--------~- 314 (362)
T PLN02269 249 -NGPIV----LEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKE--------I- 314 (362)
T ss_pred -CCCEE----EEEecCcCCCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHH--------H-
Confidence 89999 999999999999999877899999999996446999999999999999999999888521 1
Q ss_pred CHHHHHH----HHhc--CChHHHHHHHHhh
Q psy16520 279 SKSEVQE----YEIN--NNPILRFKTLLFK 302 (353)
Q Consensus 279 ~~~e~~~----~~~~--ddP~~~~~~~l~~ 302 (353)
.+++++ ..+. ++|...|+++|.+
T Consensus 315 -~~~v~~a~~~A~~~p~P~~~~~~~~vy~~ 343 (362)
T PLN02269 315 -RKEVDDAVAKAKESPMPDPSELFTNVYVK 343 (362)
T ss_pred -HHHHHHHHHHHHhCCCCCHHHHHhhcccC
Confidence 122222 1111 3577788888874
No 17
>KOG1182|consensus
Probab=99.93 E-value=1.5e-27 Score=220.84 Aligned_cols=266 Identities=23% Similarity=0.291 Sum_probs=189.2
Q ss_pred cCCccchhccccccccCCCCCCccCC----CCC-HHHHHHHHHHHHH--HHhH--HHHHHHHH----HcCCccccccCCC
Q psy16520 5 NASGPCFKKERLGRYSGSNGQSSHLS----NVD-NETNIRMYKTMVT--LNEM--DKVMYESQ----RQGRISFYMTSSG 71 (353)
Q Consensus 5 ~~~~~~~~~g~~~~~~~~~Gqea~~~----~l~-~d~l~~~yr~m~~--~R~~--d~~~~~l~----~~Gk~g~~h~~~G 71 (353)
..+-+-+|||||.||....|+|+..+ +|+ .|-+..-||.-.. =|+| ++++..-+ -.||+..|...+|
T Consensus 103 ~IlYesQRQGRiSFYmT~~GEEa~higSAAAL~p~Dli~gQYREaGVLlwRgftle~f~~qCyGn~~d~gkGrQMPvHyG 182 (432)
T KOG1182|consen 103 RILYESQRQGRISFYMTNFGEEAIHIGSAAALEPQDLIYGQYREAGVLLWRGFTLEEFMNQCYGNKSDLGKGRQMPVHYG 182 (432)
T ss_pred HHHHHHhhcceEEEEEeccchhhhhhhhhhhCCcccccccccccCceEEEcCccHHHHHHHhcCCccccccccccccccC
Confidence 34456689999999999999999654 675 5667788988432 2444 55554443 2234333333333
Q ss_pred ---------------chhHHHHHHhcCC--C-CCeeEecCcchHHHHHcCCCHHHHHHHhhcCCCCCCCC----------
Q psy16520 72 ---------------EEGSHVGSAAALD--P-EDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKG---------- 123 (353)
Q Consensus 72 ---------------~Ea~~vg~~~al~--~-~D~v~~~yR~~g~~la~G~~~~~~~~~~~g~~~g~s~G---------- 123 (353)
|-+-++|++.+++ + .+.+ +..|.++|+.|.|
T Consensus 183 s~elnf~tissplatqlpqAvGaaYa~k~~~~nnac---------------------~V~yfGdG~aSEGD~HA~~NfAA 241 (432)
T KOG1182|consen 183 SKELNFVTISSPLATQLPQAVGAAYALKMRKKNNAC---------------------AVTYFGDGAASEGDAHAAFNFAA 241 (432)
T ss_pred ccccceEEecchhhhccchhhhhhhhhhhcccCCeE---------------------EEEEecCCcccccchhhhhhHHH
Confidence 3334567777766 1 2233 3334444555554
Q ss_pred -CCCccccccCCCCccccccccccchhh----hhhhhccee--eecCCcEEEEEeecchhhhhhcccccccccccccccC
Q psy16520 124 -KQMPVHYGSRQHHFVTISSPLATQLPQ----AVGSAYAYK--LKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMG 196 (353)
Q Consensus 124 -~~~p~h~~~~e~n~~~~ss~vg~q~~~----a~G~A~g~~--~~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~ 196 (353)
...|++|+| -||.|+||+|+..|+.. +.|-|||+. ++||||+++||-...++- +.+
T Consensus 242 tle~Pvif~C-RNNG~AISTptseQyr~DGIa~kG~aYGi~sIRVDGnD~lAvYnA~k~AR----------------e~a 304 (432)
T KOG1182|consen 242 TLECPVIFFC-RNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDALAVYNAVKEAR----------------EMA 304 (432)
T ss_pred HhCCCEEEEE-cCCCeeeccccHHHhcCCceEEeccccceEEEEecCcchHHHHHHHHHHH----------------HHH
Confidence 568999999 69999999999999953 479999998 899999999999988886 467
Q ss_pred cccCCCcccccccccccccccCCCccChhHhhcCHHHHHHHHHcCCCeehhHHHHhhccCCCHHHHHHhhccCCCCCccc
Q psy16520 197 SRPEGLAWVFQPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTA 276 (353)
Q Consensus 197 ~a~rgp~~~~~~~~~~~~r~~~hs~~D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~ 276 (353)
+....|.+ ||++|||.|.||.+|+...||+.+|+..|-.+..||-+||+|+..+|+|+|++-..+.... .
T Consensus 305 v~e~rPvl----iEamtYRvGHHSTSDDSt~YRsadEiq~W~~~~~pisrfr~~i~~~GWw~ee~E~~~rk~~------r 374 (432)
T KOG1182|consen 305 VTEQRPVL----IEAMTYRVGHHSTSDDSTAYRSADEIQYWNKSRHPISRFRKYIESNGWWSEEDESELRKNI------R 374 (432)
T ss_pred HhccCchh----hhhhhhhhccccCCCccccccchhhhhhhhcccCcHHHHHHHHHhcCCcChhhHHHHHHHH------H
Confidence 78888999 9999999999999999899999999999975559999999999999999999887765211 1
Q ss_pred cCCHHHHH---HHHhcCChHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q psy16520 277 YRSKSEVQ---EYEINNNPILRFKTLLFKKKLWSEKQDEQLKKESKQLVL 323 (353)
Q Consensus 277 yr~~~e~~---~~~~~ddP~~~~~~~l~~~g~~t~~e~~~~~~e~~~~v~ 323 (353)
.+--++++ .|.+ +++-..|.++|.+. +..+.+.+.++++-|+
T Consensus 375 k~vl~a~~~aEk~~K-~~~~~lF~dVYd~~----P~~L~eq~~~l~~~i~ 419 (432)
T KOG1182|consen 375 KKVLEAIAAAEKKEK-PNLTELFEDVYDEM----PKNLREQELELKEHIE 419 (432)
T ss_pred HHHHHHHHHHhcccC-CCHHHHHHHHhhhh----hHhHHHHHHHHHHHHH
Confidence 11112222 2333 35777999999754 4555555555555443
No 18
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.92 E-value=6.4e-27 Score=227.31 Aligned_cols=231 Identities=18% Similarity=0.187 Sum_probs=172.1
Q ss_pred ccccCCccchhcccc-ccccCCCCCCccCC----CC-CHHHHHHHHHHHH--HHHhHH--HHHHHHH------HcCCccc
Q psy16520 2 WIENASGPCFKKERL-GRYSGSNGQSSHLS----NV-DNETNIRMYKTMV--TLNEMD--KVMYESQ------RQGRISF 65 (353)
Q Consensus 2 ~~e~~~~~~~~~g~~-~~~~~~~Gqea~~~----~l-~~d~l~~~yr~m~--~~R~~d--~~~~~l~------~~Gk~g~ 65 (353)
.+|+++..+|+||+| +++|++.||||+++ +| ..|++.+.||++. ++|+++ +.|++++ ++||.|+
T Consensus 34 ~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~ae~~g~~~g~~~Gr~gs 113 (341)
T CHL00149 34 NFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVPPKNVMAELFGKETGCSRGRGGS 113 (341)
T ss_pred HHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCC
Confidence 368899999999999 79999999999876 66 4789999999975 467776 5677776 5688889
Q ss_pred cccCC------C-------chhHHHHHHhcCC----------CCCeeEecCcchHHHHHcCCCHHHHHHHhhcCCCCCCC
Q psy16520 66 YMTSS------G-------EEGSHVGSAAALD----------PEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDK 122 (353)
Q Consensus 66 ~h~~~------G-------~Ea~~vg~~~al~----------~~D~v~~~yR~~g~~la~G~~~~~~~~~~~g~~~g~s~ 122 (353)
||.+. | +-+.++|++.+.+ ++..+++ +-|.|... -| .+-|.+. +..
T Consensus 114 ~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~-~~GDGa~~-~G-----~~~Ealn----~A~ 182 (341)
T CHL00149 114 MHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTAC-FFGDGTTN-NG-----QFFECLN----MAV 182 (341)
T ss_pred ccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEE-EeCCchhh-hc-----HHHHHHH----HHh
Confidence 99752 1 3344455555531 2222222 22222111 11 1111111 112
Q ss_pred CCCCccccccCCCCccccccccccchhh----hhhhhccee--eecCCcEEEEEeecchhhhhhcccccccccccccccC
Q psy16520 123 GKQMPVHYGSRQHHFVTISSPLATQLPQ----AVGSAYAYK--LKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMG 196 (353)
Q Consensus 123 G~~~p~h~~~~e~n~~~~ss~vg~q~~~----a~G~A~g~~--~~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~ 196 (353)
-+++|++|+| +||.|+++++...+++. .++.+||++ .+|++|+..|+.....+. +.+
T Consensus 183 ~~~LPvifvv-~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~----------------~~a 245 (341)
T CHL00149 183 LWKLPIIFVV-ENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAV----------------ERA 245 (341)
T ss_pred hcCCCEEEEE-EeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHH----------------HHH
Confidence 3789999999 89999999987766542 478888886 789999988886665554 366
Q ss_pred cccCCCcccccccccccccccCCCccChhHhhcCHHHHHHHHHcCCCeehhHHHHhhccCCCHHHHHHhh
Q psy16520 197 SRPEGLAWVFQPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEEQDEQIG 266 (353)
Q Consensus 197 ~a~rgp~~~~~~~~~~~~r~~~hs~~D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~~~~~~~e~~~~R~~ 266 (353)
+.+++|.+ |++.|||++.|+.+|+ ..||+.+|..+|. ++||+.+|+++|+++|+||+++...+.
T Consensus 246 r~~~gP~l----Iev~tyR~~gHs~~D~-~~YR~~~e~~~~~-~~DPi~~~~~~L~~~g~~~~~~~~~i~ 309 (341)
T CHL00149 246 RQGDGPTL----IEALTYRFRGHSLADP-DELRSKQEKEAWV-ARDPIKKLKSYIIDNELASQKELNKIQ 309 (341)
T ss_pred HhCCCCEE----EEEEEecCCCcCCCCC-ccCCCHHHHHHHh-cCCHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 78899999 9999999999999998 4799999999996 679999999999999999999998885
No 19
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=99.91 E-value=2.9e-28 Score=233.17 Aligned_cols=230 Identities=22% Similarity=0.258 Sum_probs=162.1
Q ss_pred CCccchhccccccccCCCCCCccCC----CCC-HHHHHHHHHHHH--HHHhHH--HHHHHHH--HcCCccccc-cC----
Q psy16520 6 ASGPCFKKERLGRYSGSNGQSSHLS----NVD-NETNIRMYKTMV--TLNEMD--KVMYESQ--RQGRISFYM-TS---- 69 (353)
Q Consensus 6 ~~~~~~~~g~~~~~~~~~Gqea~~~----~l~-~d~l~~~yr~m~--~~R~~d--~~~~~l~--~~Gk~g~~h-~~---- 69 (353)
+...+.+||+.++++++.|||+.++ +|. .|++...||++. ++|.++ +.+.+++ .+|++|.+| .+
T Consensus 13 ~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~~g~~~~~~~~~~ 92 (300)
T PF00676_consen 13 RARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKGHGGGRHPLHFSDK 92 (300)
T ss_dssp HHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTSTTTTGCTTEEEBT
T ss_pred HHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccCCCCCccccccccc
Confidence 3444556777799999999999875 453 588999999974 456665 5567776 344556666 22
Q ss_pred ----------CC-chhHHHHHHhcCC--CCCeeEecCcchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccccCCCC
Q psy16520 70 ----------SG-EEGSHVGSAAALD--PEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHH 136 (353)
Q Consensus 70 ----------~G-~Ea~~vg~~~al~--~~D~v~~~yR~~g~~la~G~~~~~~~~~~~g~~~g~s~G~~~p~h~~~~e~n 136 (353)
.| |-++++|++.+++ ..+.|...+-|.|. .. +..+-|.+. .+.-|++|++|+| +||
T Consensus 93 ~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga-~~-----qG~~~EalN----~A~~~~lPvifvv-eNN 161 (300)
T PF00676_consen 93 GLNILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGA-TS-----QGDFHEALN----LAALWKLPVIFVV-ENN 161 (300)
T ss_dssp TTTBEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGG-GG-----SHHHHHHHH----HHHHTTTSEEEEE-EEE
T ss_pred cceeeeccccccccCccccchhHhhhhcCCceeEEEEecCcc-cc-----cCccHHHHH----HHhhccCCeEEEE-ecC
Confidence 12 3356666666654 23333333333222 11 112333332 1112899999999 999
Q ss_pred ccccccccccchhh----hhhhhccee--eecCCcEEEEEeecchhhhhhcccccccccccccccCcccCCCcccccccc
Q psy16520 137 FVTISSPLATQLPQ----AVGSAYAYK--LKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLAWVFQPLE 210 (353)
Q Consensus 137 ~~~~ss~vg~q~~~----a~G~A~g~~--~~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~~a~rgp~~~~~~~~ 210 (353)
.|++|++...|.+. .+|.+||++ .+||+||..|+..-..+. ++.|.++||.+ ||
T Consensus 162 ~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~----------------~~~R~g~gP~l----ie 221 (300)
T PF00676_consen 162 QYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAV----------------EYARAGKGPVL----IE 221 (300)
T ss_dssp SEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHH----------------HHHHTTT--EE----EE
T ss_pred CcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHH----------------HHHhcCCCCEE----EE
Confidence 99999999988864 378889988 899999999999988887 58899999999 99
Q ss_pred cccccccCCCccChhHhhcCHHHHHHHHHcCCCeehhHHHHhhccCCCHHHHHHhh
Q psy16520 211 LTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEEQDEQIG 266 (353)
Q Consensus 211 ~~~~r~~~hs~~D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~~~~~~~e~~~~R~~ 266 (353)
++|||+..|+..|+...||+.+|..+|..++||+.+|+++|+++|+|++++...+.
T Consensus 222 ~~tyR~~gHs~~Dd~~~yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~ 277 (300)
T PF00676_consen 222 AVTYRLRGHSESDDPTFYRSPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIE 277 (300)
T ss_dssp EEE--SS-SSTTSCGGGTSHHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred EeeccCCCCCCCCCccccCCHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999987789998888887754459999999999999999999999885
No 20
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.91 E-value=8.9e-27 Score=224.36 Aligned_cols=231 Identities=20% Similarity=0.265 Sum_probs=171.4
Q ss_pred ccccCCccchhcccc-ccccCCCCCCccCC----CC-CHHHHHHHHHHHH--HHHhHH--HHHHHHH------HcCCccc
Q psy16520 2 WIENASGPCFKKERL-GRYSGSNGQSSHLS----NV-DNETNIRMYKTMV--TLNEMD--KVMYESQ------RQGRISF 65 (353)
Q Consensus 2 ~~e~~~~~~~~~g~~-~~~~~~~Gqea~~~----~l-~~d~l~~~yr~m~--~~R~~d--~~~~~l~------~~Gk~g~ 65 (353)
.+|+++..++|||+| +++|++.||||+++ +| +.|++.+.||++. ++|+++ +.+.+++ ++||.|+
T Consensus 16 ~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~~~g~~~g~~~Gr~g~ 95 (315)
T TIGR03182 16 RFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAELTGRATGCSKGKGGS 95 (315)
T ss_pred HHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCC
Confidence 368899999999999 68899999999875 66 4689999999974 567775 4566665 5678888
Q ss_pred cccCC------------C-chhHHHHHHhcCC---CCCeeEecCcchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccc
Q psy16520 66 YMTSS------------G-EEGSHVGSAAALD---PEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVH 129 (353)
Q Consensus 66 ~h~~~------------G-~Ea~~vg~~~al~---~~D~v~~~yR~~g~~la~G~~~~~~~~~~~g~~~g~s~G~~~p~h 129 (353)
+|.+. | +-+.++|++.+.+ ++..+++.+=+ |.. ..| .+.+.+. +..-+++|++
T Consensus 96 ~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GD-Ga~-~~g-----~~~ealn----~A~~~~lPvi 164 (315)
T TIGR03182 96 MHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGD-GAA-NQG-----QFYESFN----MAALWKLPVI 164 (315)
T ss_pred CCcCchhhCcccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCC-Ccc-ccc-----HHHHHHH----HhhccCcCEE
Confidence 88752 1 3344555555543 23333332222 111 111 1212121 0112689999
Q ss_pred cccCCCCccccccccccchhh----hhhhhccee--eecCCcEEEEEeecchhhhhhcccccccccccccccCcccCCCc
Q psy16520 130 YGSRQHHFVTISSPLATQLPQ----AVGSAYAYK--LKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLA 203 (353)
Q Consensus 130 ~~~~e~n~~~~ss~vg~q~~~----a~G~A~g~~--~~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~~a~rgp~ 203 (353)
|++ .||.|+++++...+.+. .++.+||++ .+|++|+..|+.....+. +..+.+++|.
T Consensus 165 ~vv-~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~----------------~~ar~~~gP~ 227 (315)
T TIGR03182 165 FVI-ENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAV----------------ERARSGKGPI 227 (315)
T ss_pred EEE-EcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHH----------------HHHHccCCCE
Confidence 999 89999999987766642 378888887 789999888887766654 3667889999
Q ss_pred ccccccccccccccCCCccChhHhhcCHHHHHHHHHcCCCeehhHHHHhhccCCCHHHHHHhh
Q psy16520 204 WVFQPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEEQDEQIG 266 (353)
Q Consensus 204 ~~~~~~~~~~~r~~~hs~~D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~~~~~~~e~~~~R~~ 266 (353)
+ |++.|||++.|+.+|+. .||+.++...|. ++||+.+|+++|+++|+|++.+...+.
T Consensus 228 l----Ie~~t~R~~gHs~~D~~-~Yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~~~ 284 (315)
T TIGR03182 228 L----LEMKTYRFRGHSMSDPA-KYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELKEID 284 (315)
T ss_pred E----EEEeCCcCCCCCCCCcc-ccCCHHHHHHHH-hcCHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 9 99999999999999985 799999999996 679999999999999999999999885
No 21
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.91 E-value=2.6e-26 Score=228.23 Aligned_cols=230 Identities=20% Similarity=0.234 Sum_probs=173.0
Q ss_pred ccccCCccchhcccc-ccccCCCCCCccCC----CC-CHHHHHHHHHHHHH--HHhHH--HHHHHHH------HcCCccc
Q psy16520 2 WIENASGPCFKKERL-GRYSGSNGQSSHLS----NV-DNETNIRMYKTMVT--LNEMD--KVMYESQ------RQGRISF 65 (353)
Q Consensus 2 ~~e~~~~~~~~~g~~-~~~~~~~Gqea~~~----~l-~~d~l~~~yr~m~~--~R~~d--~~~~~l~------~~Gk~g~ 65 (353)
.+|+++..+|+||+| +++|++.|||++++ +| +.|++...||++.. +|+++ +.|.+++ +.|++|+
T Consensus 100 ~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~~~~~~mael~Gk~~g~~~Grggs 179 (433)
T PLN02374 100 SFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGS 179 (433)
T ss_pred HHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCCCHHHHHHHHcCCCCCCCCCCCCc
Confidence 378999999999999 89999999999876 56 47889999999754 56654 5677776 4578889
Q ss_pred cccCC------------C-chhHHHHHHhcCCCCCeeEecCcchHHHHHcCCCHHHHHHHhhcCCCCCCCC---------
Q psy16520 66 YMTSS------------G-EEGSHVGSAAALDPEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKG--------- 123 (353)
Q Consensus 66 ~h~~~------------G-~Ea~~vg~~~al~~~D~v~~~yR~~g~~la~G~~~~~~~~~~~g~~~g~s~G--------- 123 (353)
||.+. | +-+.++|++.+.+ |++.- +.. .. .+-+..+|.++|+++.|
T Consensus 180 mH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k--------~~~~~--~~~-~~-~~~vvv~~~GDGa~~eG~f~EaLn~A 247 (433)
T PLN02374 180 MHMFSKEHNLLGGFAFIGEGIPVATGAAFSSK--------YRREV--LKE-ES-CDDVTLAFFGDGTCNNGQFFECLNMA 247 (433)
T ss_pred CccCchhhCCCCCceeccCchhHHHHHHHHHH--------Hhhcc--ccc-cC-CCCEEEEEECCCccccChHHHHHHHH
Confidence 99752 1 2334445554432 11000 000 00 01122344445555544
Q ss_pred --CCCccccccCCCCccccccccccchhh----hhhhhccee--eecCCcEEEEEeecchhhhhhccccccccccccccc
Q psy16520 124 --KQMPVHYGSRQHHFVTISSPLATQLPQ----AVGSAYAYK--LKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEM 195 (353)
Q Consensus 124 --~~~p~h~~~~e~n~~~~ss~vg~q~~~----a~G~A~g~~--~~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~ 195 (353)
+++|++|+| +||.|+++++...|++. ..+.+||++ .+||+|+..|+.....+. +.
T Consensus 248 ~~~~LPvIfVV-~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~----------------~~ 310 (433)
T PLN02374 248 ALWKLPIVFVV-ENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAI----------------ER 310 (433)
T ss_pred HHhCCCEEEEE-eCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHH----------------HH
Confidence 789999999 99999999988877532 367888887 899999998887766655 46
Q ss_pred CcccCCCcccccccccccccccCCCccChhHhhcCHHHHHHHHHcCCCeehhHHHHhhccCCCHHHHHHhh
Q psy16520 196 GSRPEGLAWVFQPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEEQDEQIG 266 (353)
Q Consensus 196 ~~a~rgp~~~~~~~~~~~~r~~~hs~~D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~~~~~~~e~~~~R~~ 266 (353)
.+.+++|.+ |++.|||+.+|+..|+. .||+.+|...|. ++|||.+|+++|+++|+|++.+...+.
T Consensus 311 Ar~g~gP~L----Ie~~tyR~~GHs~~D~~-~YR~~~e~~~~~-~~DPi~~~~~~L~~~gi~te~e~~~i~ 375 (433)
T PLN02374 311 ARRGEGPTL----VECETYRFRGHSLADPD-ELRDPAEKAHYA-ARDPIAALKKYLIENGLATEAELKAIE 375 (433)
T ss_pred HHHcCCCEE----EEEEEEecCCcCCCCcc-ccCCHHHHHHHH-cCCcHHHHHHHHHHcCCCCHHHHHHHH
Confidence 778899999 99999999999999884 699999999986 679999999999999999999998885
No 22
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.88 E-value=3.7e-25 Score=215.25 Aligned_cols=260 Identities=22% Similarity=0.275 Sum_probs=177.9
Q ss_pred ccccCCccchhccccccccCCCCCCccCC----CC-CHHHHHHHHHHHH--HHHhHH--HHHHHHHHcCCccccc---cC
Q psy16520 2 WIENASGPCFKKERLGRYSGSNGQSSHLS----NV-DNETNIRMYKTMV--TLNEMD--KVMYESQRQGRISFYM---TS 69 (353)
Q Consensus 2 ~~e~~~~~~~~~g~~~~~~~~~Gqea~~~----~l-~~d~l~~~yr~m~--~~R~~d--~~~~~l~~~Gk~g~~h---~~ 69 (353)
.+|+++..+|+||+|+|+|++.||||+++ +| +.|++...||++. ++|+++ +.+++++.+..+..+. ..
T Consensus 38 ~~e~~~~~~~~~g~i~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~h~~~l~~G~~~~~~~ae~~g~~~g~~~~~~~~~ 117 (341)
T TIGR03181 38 RFDTKALALQRQGRLGTYAPNLGQEAAQVGSALALRKDDWVFPSYRDHAAMLARGVPLVEILLYWRGDERGSWDPEGVNI 117 (341)
T ss_pred HHHHHHHHHHhCCceecccCCCChHHHHHHHHHHcCCCCEEEcchhhHHHHHHcCCCHHHHHHHhcCcCcCCCCchhcCc
Confidence 36889999999999999999999999775 56 4789999999985 457776 4566664222211111 11
Q ss_pred CC-------chhHHHHHHhcCC---CCCeeEecCcchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccccCCCCccc
Q psy16520 70 SG-------EEGSHVGSAAALD---PEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVT 139 (353)
Q Consensus 70 ~G-------~Ea~~vg~~~al~---~~D~v~~~yR~~g~~la~G~~~~~~~~~~~g~~~g~s~G~~~p~h~~~~e~n~~~ 139 (353)
.| +-+.++|++.+.+ ++..+++.+=+-+. ..| .+.+.+. +..=+++|++|++ .||.|+
T Consensus 118 ~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~--~~g-----~~~EaL~----tA~~~~LPvi~Vv-~NN~~~ 185 (341)
T TIGR03181 118 LPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGT--SEG-----DFYEALN----FAGVFKAPVVFFV-QNNQWA 185 (341)
T ss_pred cCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCcc--ccC-----hHHHHHH----HHhccCCCEEEEE-ECCCCc
Confidence 11 2334445544432 33334433222111 011 1111111 0112689999999 899999
Q ss_pred cccccccchhh----hhhhhccee--eecCCcEEEEEeecchhhhhhcccccccccccccccCcccCCCccccccccccc
Q psy16520 140 ISSPLATQLPQ----AVGSAYAYK--LKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLAWVFQPLELTE 213 (353)
Q Consensus 140 ~ss~vg~q~~~----a~G~A~g~~--~~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~~a~rgp~~~~~~~~~~~ 213 (353)
++++...+.+. .++.+||++ .++++++..|+.....+. +.++.+++|.+ |++.|
T Consensus 186 ~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~----------------~~a~~~~gP~l----Iev~t 245 (341)
T TIGR03181 186 ISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAV----------------ERARSGGGPTL----IEAVT 245 (341)
T ss_pred cccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHH----------------HHHHcCCCCEE----EEEEe
Confidence 99887665432 468888887 789999888887766665 35677889999 99999
Q ss_pred ccccCCCccChhHhhcCHHHHHHHHHcCCCeehhHHHHhhccCCCHHHHHHhhccCCCCCccccCC--HHHHHHHH--hc
Q psy16520 214 TTIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRS--KSEVQEYE--IN 289 (353)
Q Consensus 214 ~r~~~hs~~D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~--~~e~~~~~--~~ 289 (353)
||+.+|+.+|....||+.+|...|. ++||+.+|+++|+++|+|++.+...+.. + ++. .+.++... ..
T Consensus 246 ~R~~gH~~~D~~~~YR~~~e~~~~~-~~Dpi~~~~~~L~~~g~~~~~e~~~i~~-------~-~~~~v~~a~~~a~~~p~ 316 (341)
T TIGR03181 246 YRLGPHTTADDPTRYRTKEEEEEWR-KKDPILRLRKYLERKGLWDEEQEEALEE-------E-AEAEVAEAVAEALALPP 316 (341)
T ss_pred ecCCCCCCCCCCccCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHH-------H-HHHHHHHHHHHHHhCCC
Confidence 9999999998767899999999996 6899999999999999999999988852 1 111 11111111 11
Q ss_pred CChHHHHHHHHhh
Q psy16520 290 NNPILRFKTLLFK 302 (353)
Q Consensus 290 ddP~~~~~~~l~~ 302 (353)
+||-..|+++|.+
T Consensus 317 P~~~~~~~~vy~~ 329 (341)
T TIGR03181 317 PPVDDIFDHVYAE 329 (341)
T ss_pred CCHHHHHhhcccC
Confidence 3688899999975
No 23
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.87 E-value=6.1e-25 Score=209.81 Aligned_cols=232 Identities=23% Similarity=0.327 Sum_probs=166.2
Q ss_pred ccccCCccchhcccccc-ccCCCCCCccCC----CC-CHHHHHHHHHHHH--HHHhHH--HHHHHHH------HcCCccc
Q psy16520 2 WIENASGPCFKKERLGR-YSGSNGQSSHLS----NV-DNETNIRMYKTMV--TLNEMD--KVMYESQ------RQGRISF 65 (353)
Q Consensus 2 ~~e~~~~~~~~~g~~~~-~~~~~Gqea~~~----~l-~~d~l~~~yr~m~--~~R~~d--~~~~~l~------~~Gk~g~ 65 (353)
.+|+++..+||||++++ ++++.|||++++ +| +.|++...||++. ++|+++ ..+.+++ +.||.|+
T Consensus 10 ~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~g~~~G~~g~ 89 (293)
T cd02000 10 RFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKETGPCKGRGGS 89 (293)
T ss_pred HHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCCCCCCCCCCC
Confidence 36889999999999975 999999999876 56 4688999999974 457665 5677776 4677788
Q ss_pred cccCC------------C-chhHHHHHHhcCC---CCCeeEecCcchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccc
Q psy16520 66 YMTSS------------G-EEGSHVGSAAALD---PEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVH 129 (353)
Q Consensus 66 ~h~~~------------G-~Ea~~vg~~~al~---~~D~v~~~yR~~g~~la~G~~~~~~~~~~~g~~~g~s~G~~~p~h 129 (353)
+|.+. | +-+.++|++.+.+ ++..+++.+=+ |.. ..| .+.+.+. +..-+++|++
T Consensus 90 ~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GD-Ga~-~~g-----~~~E~l~----~A~~~~lPvi 158 (293)
T cd02000 90 MHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGD-GAT-NEG-----DFHEALN----FAALWKLPVI 158 (293)
T ss_pred CCCCchhcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCC-Ccc-ccc-----hHHHHHH----HHHhhCCCEE
Confidence 88752 1 3344455555542 23333322221 110 111 1111111 0112579999
Q ss_pred cccCCCCccccccccccchhh----hhhhhccee--eecCCcEEEEEeecchhhhhhcccccccccccccccCcccCCCc
Q psy16520 130 YGSRQHHFVTISSPLATQLPQ----AVGSAYAYK--LKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLA 203 (353)
Q Consensus 130 ~~~~e~n~~~~ss~vg~q~~~----a~G~A~g~~--~~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~~a~rgp~ 203 (353)
|++ .||.|+++++...+.+. .++.+|+++ .+|++|+..++.....+. +..+.+++|.
T Consensus 159 ~vv-~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~----------------~~ar~~~~P~ 221 (293)
T cd02000 159 FVC-ENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAV----------------ERARAGGGPT 221 (293)
T ss_pred EEE-eeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHH----------------HHHHccCCCE
Confidence 999 89999999988766532 367778876 788888766665555443 2456778999
Q ss_pred ccccccccccccccCCCccChhHhhcCHHHHHHHHHcCCCeehhHHHHhhccCCCHHHHHHhh
Q psy16520 204 WVFQPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEEQDEQIG 266 (353)
Q Consensus 204 ~~~~~~~~~~~r~~~hs~~D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~~~~~~~e~~~~R~~ 266 (353)
+ |++.|||.+.|+..|+...||+.++...|. ++||+.+|+++|+++|+||+++...+.
T Consensus 222 l----Iev~~~r~~gHs~~dd~~~Yr~~~e~~~~~-~~dpi~~~~~~L~~~g~~~~~~~~~~~ 279 (293)
T cd02000 222 L----IEAVTYRLGGHSTSDDPSRYRTKEEVEEWK-KRDPILRLRKYLIEAGILTEEELAAIE 279 (293)
T ss_pred E----EEEEEeccCCCCCCCCcccCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 9 999999999999775557899999999885 679999999999999999999998884
No 24
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.68 E-value=5.4e-16 Score=162.39 Aligned_cols=282 Identities=14% Similarity=0.103 Sum_probs=198.6
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHH-HcCCccccccCCCchhHHHHHH------hcCCCCCeeEe-cCcchHHHHH-
Q psy16520 31 NVDNETNIRMYKTMVTLNEMDKVMYESQ-RQGRISFYMTSSGEEGSHVGSA------AALDPEDLVYA-QYRETGVLMW- 101 (353)
Q Consensus 31 ~l~~d~l~~~yr~m~~~R~~d~~~~~l~-~~Gk~g~~h~~~G~Ea~~vg~~------~al~~~D~v~~-~yR~~g~~la- 101 (353)
..+.++-..+.+.+.-+-.||.++...| .|.|. +--|.|....-+- +--+-+.++++ .|||+-+.|+
T Consensus 489 kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqkRF----slEG~Es~iplld~~~~~aa~~~l~evvigm~HRGRLNVLan 564 (1228)
T PRK12270 489 KPTREEQKRILSKLNAAEAFETFLQTKYVGQKRF----SLEGGESLIPLLDAVLDQAAEHGLDEVVIGMAHRGRLNVLAN 564 (1228)
T ss_pred CCCHHHHHHHHHHhhhHHHHHHHHhhhcccceee----eecchhhHHHHHHHHHHHHHhcCCceEEecccccchHHHHHH
Confidence 5567777788888888999998887776 44441 3345565432111 11222355555 7999888775
Q ss_pred -cCCCHHHHHHHhhcCCC-CCCCC-CCCcccccc------CC-----CCccccccccccchhhhhhhhccee-eec----
Q psy16520 102 -RGFSVEQMIDQLYGNIG-SSDKG-KQMPVHYGS------RQ-----HHFVTISSPLATQLPQAVGSAYAYK-LKK---- 162 (353)
Q Consensus 102 -~G~~~~~~~~~~~g~~~-g~s~G-~~~p~h~~~------~e-----~n~~~~ss~vg~q~~~a~G~A~g~~-~~~---- 162 (353)
.|.+..++|.|+-|+-. +...| .+.--|+.. .. ...-+..|++....|+.-|+..+.+ +.+
T Consensus 565 i~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPSHLEavdpVleGivRakQd~l~~g~~ 644 (1228)
T PRK12270 565 IVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDPVLEGIVRAKQDRLDKGEE 644 (1228)
T ss_pred HhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeeccCCCeeEEEEecCchhhhhcchHhhhhhhhhhhhhccccc
Confidence 49999999999999642 22233 123333332 10 1123446677777788889988876 222
Q ss_pred -CCcEEEEEeecchhh--------------------hhhcccccccccccccccCcccCCCcccc---cccccccccccC
Q psy16520 163 -NEKVVIVYFGEGAAI--------------------VTMATPFQPQRRNSMEEMGSRPEGLAWVF---QPLELTETTIGH 218 (353)
Q Consensus 163 -g~~v~~v~~Gdg~~~--------------------a~is~~~~~q~~~~~~~~~~a~rgp~~~~---~~~~~~~~r~~~ 218 (353)
-.-+.++.+||++.. .+|+++.|||+++||. ...+|...|.. +++. -+.+
T Consensus 645 ~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~--p~~~Rss~y~td~ak~~~----~Pif 718 (1228)
T PRK12270 645 GFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTA--PESSRSSEYATDVAKMIQ----APIF 718 (1228)
T ss_pred CCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccC--ccccccchhhHHHHhhcC----CCEE
Confidence 245788999999966 1399999999999872 22233332311 1121 2466
Q ss_pred CCcc-ChhHhhcCHHHHHHHHHcC-CCeehhHHHHhhccCCCHHHHHHhhccCCCCCccccCCHHHHHHHHhcCChHHHH
Q psy16520 219 HSTS-DDSTAYRSKSEVQEYEINN-NPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRF 296 (353)
Q Consensus 219 hs~~-D~~~~yr~~~ea~~~~r~~-~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~~~~~ddP~~~~ 296 (353)
|++. ||.+|++..+.|.+|+++. +||++ +..|||.+||+++|||. +.++..+....+++..-+.|
T Consensus 719 hVNGdDpeAv~~va~lA~~yr~~f~~dVvI------------dlvcYRrrGHNEgDdPS-mtqP~mY~~i~~~~svrk~y 785 (1228)
T PRK12270 719 HVNGDDPEAVVRVARLAFEYRQRFHKDVVI------------DLVCYRRRGHNEGDDPS-MTQPLMYDLIDAKRSVRKLY 785 (1228)
T ss_pred eECCCCHHHHHHHHHHHHHHHHHcCCCeEE------------EEEEEeecCCCCCCCcc-cCCchhhhhhhhcchHHHHH
Confidence 7777 9999999999999999887 99999 99999999999999987 46666666666665344589
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy16520 297 KTLLFKKKLWSEKQDEQLKKESKQLVLNSIRISEKKLKP 335 (353)
Q Consensus 297 ~~~l~~~g~~t~~e~~~~~~e~~~~v~~a~~~a~~~~~p 335 (353)
.+.|+.+|.+|++|.+++.++++++++.++...++....
T Consensus 786 te~Ligrgdit~ee~e~~l~dy~~~Le~~f~e~re~~~~ 824 (1228)
T PRK12270 786 TEALIGRGDITVEEAEQALRDYQGQLERVFNEVREAEKK 824 (1228)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 999999999999999999999999999999988775433
No 25
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=99.66 E-value=1.3e-18 Score=185.89 Aligned_cols=136 Identities=10% Similarity=0.080 Sum_probs=115.6
Q ss_pred HHHHhhcCCCCC-CCC-----------CCCc---cccccCCCCccccccccccchhh----hhhhhccee--eecCCcEE
Q psy16520 109 MIDQLYGNIGSS-DKG-----------KQMP---VHYGSRQHHFVTISSPLATQLPQ----AVGSAYAYK--LKKNEKVV 167 (353)
Q Consensus 109 ~~~~~~g~~~g~-s~G-----------~~~p---~h~~~~e~n~~~~ss~vg~q~~~----a~G~A~g~~--~~~g~~v~ 167 (353)
.+..+|.+|+++ ++| |++| ++|+| +||+|+++|+...+.+. .++.+|+++ .+||+||.
T Consensus 343 ~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvv-eNNq~g~tT~~~~~~s~~~~sd~Ak~~giP~~~VDG~D~~ 421 (924)
T PRK09404 343 VLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIV-INNQIGFTTSPPDDRSTPYCTDVAKMVQAPIFHVNGDDPE 421 (924)
T ss_pred eEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEE-EeCCEEEeeCHHHhccchhHHHHHeecCCcEEEEcCCCHH
Confidence 455666666765 577 7777 99999 99999999998776543 378888887 89999999
Q ss_pred EEEeecchhhhhhcccccccccccccccCcccCCCcccccccccccccccCCCccChhHhhcCHHHHHHHHHcCCCeehh
Q psy16520 168 IVYFGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLAWVFQPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPILRF 247 (353)
Q Consensus 168 ~v~~Gdg~~~a~is~~~~~q~~~~~~~~~~a~rgp~~~~~~~~~~~~r~~~hs~~D~~~~yr~~~ea~~~~r~~~Pv~~~ 247 (353)
+|+.....+. +..+.++||.+ ||+.|||+.+|+..|+. .|+...+...|.+..+|+.++
T Consensus 422 AV~~a~~~A~----------------e~~r~g~gPvl----IE~~tYR~~GHne~D~p-~yr~p~ey~~~~~~~dpi~~~ 480 (924)
T PRK09404 422 AVVFATRLAL----------------EYRQKFKKDVV----IDLVCYRRHGHNEGDEP-SFTQPLMYKKIKKHPTTRELY 480 (924)
T ss_pred HHHHHHHHHH----------------HHHHhcCcCEE----EEEEEecCCCCCCCCCC-cCCCHHHHHHHHhcCCHHHHH
Confidence 9999988776 57889999999 99999999999999875 599999988886334999999
Q ss_pred HHHHhhccCCCHHHHHHhh
Q psy16520 248 KTLLFKKKLWSEEQDEQIG 266 (353)
Q Consensus 248 ~~~l~~~~~~~e~~~~R~~ 266 (353)
+++|+++|++++.+...+.
T Consensus 481 ~~~Li~~G~lt~~e~~~i~ 499 (924)
T PRK09404 481 ADKLVAEGVITEEEADEMV 499 (924)
T ss_pred HHHHHHcCCCCHHHHHHHH
Confidence 9999999999999998885
No 26
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=99.50 E-value=1.1e-12 Score=137.68 Aligned_cols=277 Identities=14% Similarity=0.124 Sum_probs=210.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhHHHHHHHHH-HcCCccccccCCCchhHHHHH------HhcCCCCCeeEe-cCcchHHHH
Q psy16520 29 LSNVDNETNIRMYKTMVTLNEMDKVMYESQ-RQGRISFYMTSSGEEGSHVGS------AAALDPEDLVYA-QYRETGVLM 100 (353)
Q Consensus 29 ~~~l~~d~l~~~yr~m~~~R~~d~~~~~l~-~~Gk~g~~h~~~G~Ea~~vg~------~~al~~~D~v~~-~yR~~g~~l 100 (353)
.+.++.|....+++.+.-+-+||.++...| .+.|. +--|.|+...++ +...+-.++|++ .|||+-+.|
T Consensus 169 ~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KRF----slEG~eslip~l~~~i~~~~~~G~~~vviGMaHRGRLNvL 244 (906)
T COG0567 169 KPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKRF----SLEGGESLIPMLDELIDRAGKQGVKEVVIGMAHRGRLNVL 244 (906)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCccc----cccchhhHHHHHHHHHHHHHhcCcceEEecccccchHHHH
Confidence 346789999999999999999999987776 33331 345666664333 223445678887 799987777
Q ss_pred --HcCCCHHHHHHHhhcCCC------CC--CCC-------CCCccccccCCCCccccccccccchhhhhhhhccee--ee
Q psy16520 101 --WRGFSVEQMIDQLYGNIG------SS--DKG-------KQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYK--LK 161 (353)
Q Consensus 101 --a~G~~~~~~~~~~~g~~~------g~--s~G-------~~~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~--~~ 161 (353)
-.|.+.+.++.|+-|+.. +. +.| -+.++|+.- .+| .|++....|+..|.+.+.+ ..
T Consensus 245 ~nvlgKp~~~if~eF~g~~~~~~~sGDVKYH~G~~~~~~~~~~~v~l~L-a~N----PSHLE~v~PVV~G~vRa~Qd~~~ 319 (906)
T COG0567 245 VNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDRQTDGGKVHLSL-AFN----PSHLEIVNPVVEGSVRAKQDRLG 319 (906)
T ss_pred HHHhCCCHHHHHHHhCCCCCCCCcccccccccccccccccCCCeeEEEe-cCC----cchhhhhchhhhcchHhhhhhhc
Confidence 569999999999998532 11 122 123566665 334 7899999999999999876 23
Q ss_pred cC---CcEEEEEeecchhh--------------------hhhcccccccccccccccCcccCCCcccc---ccccccccc
Q psy16520 162 KN---EKVVIVYFGEGAAI--------------------VTMATPFQPQRRNSMEEMGSRPEGLAWVF---QPLELTETT 215 (353)
Q Consensus 162 ~g---~~v~~v~~Gdg~~~--------------------a~is~~~~~q~~~~~~~~~~a~rgp~~~~---~~~~~~~~r 215 (353)
+. .-+.+..+||.+.. .+|+.-.|||.++||+ .+..|...|.. +++++
T Consensus 320 d~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTs--p~~sRSt~Y~TDvAKm~~a---- 393 (906)
T COG0567 320 DTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTS--PADARSTPYCTDVAKMIEA---- 393 (906)
T ss_pred cCccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCC--cccccCCCCCCChhhccCC----
Confidence 32 36778999999888 1289999999999874 33444444522 44444
Q ss_pred ccCCCcc-ChhHhhcCHHHHHHHHHcC-CCeehhHHHHhhccCCCHHHHHHhhccCCCCCccccCCHHHHHHHHhcCChH
Q psy16520 216 IGHHSTS-DDSTAYRSKSEVQEYEINN-NPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPI 293 (353)
Q Consensus 216 ~~~hs~~-D~~~~yr~~~ea~~~~r~~-~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~~~~~ddP~ 293 (353)
+-.|++. ||.++..+.+.|.+++.+- .++++ +..|||..||+++|+|. ...+..++..++++-+.
T Consensus 394 PifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvI------------DlvcYRr~GHNE~DePs-~TqP~mY~~I~~h~t~r 460 (906)
T COG0567 394 PIFHVNADDPEAVLFAPALALEYRNGFKKDVVI------------DLVCYRRHGHNEGDEPS-VTQPLMYQKIKKHPTVR 460 (906)
T ss_pred ceeecccCCchhhhhhHHHHHHHHhhcCCCeee------------ecccCCCCCCCcccccc-ccCHHHHHHHhcCCChh
Confidence 4566777 8889988999999997554 99999 99999999999999987 57888999999887778
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy16520 294 LRFKTLLFKKKLWSEKQDEQLKKESKQLVLNSIRISEKKL 333 (353)
Q Consensus 294 ~~~~~~l~~~g~~t~~e~~~~~~e~~~~v~~a~~~a~~~~ 333 (353)
..+.+.|+++|++++++++.+.++++..++..+.......
T Consensus 461 ~~ya~~Lv~~gvis~~~~~~~~~~~r~~L~~~~~~~~~~~ 500 (906)
T COG0567 461 KLYADKLIAEGVISEEEADELVNDYRDALDQGFEVVKEYK 500 (906)
T ss_pred hhHHHHHHhhccccHHHHHHHHHHHHHHhhhhhhHHhHHH
Confidence 8999999999999999999999999999998877665443
No 27
>KOG0451|consensus
Probab=99.50 E-value=3.7e-13 Score=133.46 Aligned_cols=271 Identities=17% Similarity=0.196 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH----HcCCccccccCCCchhHH------HHHHhcCCCCCeeEe-cCcchHHHH--
Q psy16520 34 NETNIRMYKTMVTLNEMDKVMYESQ----RQGRISFYMTSSGEEGSH------VGSAAALDPEDLVYA-QYRETGVLM-- 100 (353)
Q Consensus 34 ~d~l~~~yr~m~~~R~~d~~~~~l~----~~Gk~g~~h~~~G~Ea~~------vg~~~al~~~D~v~~-~yR~~g~~l-- 100 (353)
+++...+-..|+.+..||..++..+ |.| +-|.|..- .-.++--+..++|++ .|||+-.+|
T Consensus 156 keEr~~i~~Lmlksq~fD~FlatKFpTvKRYG-------gEGAESM~aFF~eLl~~sa~~~ie~viigmpHRGRlnLlt~ 228 (913)
T KOG0451|consen 156 KEERCEIAELMLKSQAFDNFLATKFPTVKRYG-------GEGAESMLAFFWELLRDSAQANIEHVIIGMPHRGRLNLLTA 228 (913)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhccchhhhhc-------cccHHHHHHHHHHHHHHHHhcCcceEEEeccccCcchHHHH
Confidence 3444555555677777887776655 332 12222221 011112234677777 799977766
Q ss_pred HcCCCHHHHHHHhhcCCCCC---C---------------CCCCCccccccCCCCccccccccccchhhhhhhhccee--e
Q psy16520 101 WRGFSVEQMIDQLYGNIGSS---D---------------KGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYK--L 160 (353)
Q Consensus 101 a~G~~~~~~~~~~~g~~~g~---s---------------~G~~~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~--~ 160 (353)
...+++..++..+-|...-+ + +|.+.++|+.- .+..|++.+..|+|+|.+.+.+ +
T Consensus 229 Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhvtM-----lpNPSHLEAvNPVAmGKtR~rqqsr 303 (913)
T KOG0451|consen 229 LLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHVTM-----LPNPSHLEAVNPVAMGKTRSRQQSR 303 (913)
T ss_pred HhcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhcccCCceEEEe-----cCChhhhhccCchhhcchhHHHHhh
Confidence 55899999999998875432 1 23344444433 5567889999999999888764 1
Q ss_pred ec------------CCcEEEEEeecchhh--------------------hhhcccccccccccccccCcccCCCcccccc
Q psy16520 161 KK------------NEKVVIVYFGEGAAI--------------------VTMATPFQPQRRNSMEEMGSRPEGLAWVFQP 208 (353)
Q Consensus 161 ~~------------g~~v~~v~~Gdg~~~--------------------a~is~~~~~q~~~~~~~~~~a~rgp~~~~~~ 208 (353)
.+ ..-+.+..+||++.. ++++...|||.++|+ ..-.||..+|
T Consensus 304 ~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTt--p~~rGRSs~y---- 377 (913)
T KOG0451|consen 304 GEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTT--PGDRGRSSAY---- 377 (913)
T ss_pred cCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccC--cccccccchh----
Confidence 11 123667789999887 126778899999876 4445666666
Q ss_pred cccccc---cccCCCcc-ChhHhhcCHHHHHHHHHcC-CCeehhHHHHhhccCCCHHHHHHhhccCCCCCccccCCHHHH
Q psy16520 209 LELTET---TIGHHSTS-DDSTAYRSKSEVQEYEINN-NPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEV 283 (353)
Q Consensus 209 ~~~~~~---r~~~hs~~-D~~~~yr~~~ea~~~~r~~-~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~ 283 (353)
+..+.- -+-+|++. ||.++-|+..-|.++.|+- +.|++ +..|+|-+||++-|||+ |.++-.+
T Consensus 378 csDiaK~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfI------------dL~CfRrwgHnelddp~-ftspvmy 444 (913)
T KOG0451|consen 378 CSDIAKSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFI------------DLNCFRRWGHNELDDPT-FTSPVMY 444 (913)
T ss_pred hhHHHHHhCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhhee------------ehHHHHHhccccccCcc-ccChhHH
Confidence 222211 13567777 8888999999999998876 99999 99999999999999987 8999999
Q ss_pred HHHHhcCChHH-HHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy16520 284 QEYEINNNPIL-RFKTLLFKKKLWSEKQDEQLKKESKQLVLNSIRISEKKLKPS 336 (353)
Q Consensus 284 ~~~~~~ddP~~-~~~~~l~~~g~~t~~e~~~~~~e~~~~v~~a~~~a~~~~~p~ 336 (353)
++...+. .++ .|.+.|+++|++|+++.++++.+.-+++.+..+.+.....|+
T Consensus 445 k~v~aRe-SvPdlya~~L~~eg~~tee~vkE~~~~y~~~Ln~eL~~~~~y~Pp~ 497 (913)
T KOG0451|consen 445 KEVEARE-SVPDLYAQQLAKEGVLTEEKVKEMRDEYMKYLNEELALAPAYQPPP 497 (913)
T ss_pred HHHHhhh-cccHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCccCCCc
Confidence 9888886 555 789999999999999999999999999999998887765443
No 28
>KOG0450|consensus
Probab=99.48 E-value=6.3e-13 Score=134.56 Aligned_cols=279 Identities=13% Similarity=0.118 Sum_probs=207.3
Q ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHHHc-CCccccccCCCchhHHHHHH------hcCCCCCeeEe-cCcchHHHHHc
Q psy16520 31 NVDNETNIRMYKTMVTLNEMDKVMYESQRQ-GRISFYMTSSGEEGSHVGSA------AALDPEDLVYA-QYRETGVLMWR 102 (353)
Q Consensus 31 ~l~~d~l~~~yr~m~~~R~~d~~~~~l~~~-Gk~g~~h~~~G~Ea~~vg~~------~al~~~D~v~~-~yR~~g~~la~ 102 (353)
.++.|+...++..+..+-.||+.++..+.. .|. .--|.|...-|+. .-++.+++|++ .|||+-+.|+-
T Consensus 245 q~s~e~k~~il~RL~~st~FE~FLa~Kw~seKRF----GLEGcE~lIP~mK~iiDrS~elGVe~iviGMpHRGRLNvL~N 320 (1017)
T KOG0450|consen 245 QYSHEQKRVILDRLTRSTRFEEFLATKWPSEKRF----GLEGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNVLAN 320 (1017)
T ss_pred ccCHHHHHHHHHHHHHhhHHHHHHhhhCCccccc----cccchhhhhhHHHHHhhhhhhcCchheEecCCccchhHHHHH
Confidence 567888888888888888999998887632 221 2345566544443 33556788888 79998777744
Q ss_pred --CCCHHHHHHHhhcCCCCCCCCC-CCcccccc---CCC---------Cccccccccccchhhhhhhhccee-----eec
Q psy16520 103 --GFSVEQMIDQLYGNIGSSDKGK-QMPVHYGS---RQH---------HFVTISSPLATQLPQAVGSAYAYK-----LKK 162 (353)
Q Consensus 103 --G~~~~~~~~~~~g~~~g~s~G~-~~p~h~~~---~e~---------n~~~~ss~vg~q~~~a~G~A~g~~-----~~~ 162 (353)
..+++.++.++-|-+ ....|. +.--|+.. +.| ...+..|+++++-|+..|.-.|.+ ..+
T Consensus 321 VvRKpl~qIfseF~g~~-~~DeGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~GKtrA~q~y~~D~~~ 399 (1017)
T KOG0450|consen 321 VVRKPLEQIFSEFSGLE-AADEGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMGKTRAEQFYTGDEEG 399 (1017)
T ss_pred HHhhHHHHHHHhccCCC-CCcCCCCceeeeeccccccccccCCceeEEEEecCchhhcccCceeechHHHHHHhcccccc
Confidence 567889999988832 222231 12222211 011 136678899999999999888776 234
Q ss_pred CCcEEEEEeecchhh--------------------hhhcccccccccccccccCcccCCCcccccccccccc---cccCC
Q psy16520 163 NEKVVIVYFGEGAAI--------------------VTMATPFQPQRRNSMEEMGSRPEGLAWVFQPLELTET---TIGHH 219 (353)
Q Consensus 163 g~~v~~v~~Gdg~~~--------------------a~is~~~~~q~~~~~~~~~~a~rgp~~~~~~~~~~~~---r~~~h 219 (353)
.+...+..+||++.. ++|++..|||.++|| ..|.+|...| +....- -+=.|
T Consensus 400 ~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTT--DPR~aRSspY----cTDvar~v~aPIFH 473 (1017)
T KOG0450|consen 400 KKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTT--DPRFARSSPY----CTDVARVVNAPIFH 473 (1017)
T ss_pred ceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEcccccccc--CcccccCCCC----chhHHHHhCCCeEe
Confidence 467889999999998 229999999999987 6666676666 222111 12345
Q ss_pred Ccc-ChhHhhcCHHHHHHHHHcC-CCeehhHHHHhhccCCCHHHHHHhhccCCCCCccccCCHHHHHHHHhcCChHHHHH
Q psy16520 220 STS-DDSTAYRSKSEVQEYEINN-NPILRFKTLLFKKKLWSEEQDEQIGHHSTSDDSTAYRSKSEVQEYEINNNPILRFK 297 (353)
Q Consensus 220 s~~-D~~~~yr~~~ea~~~~r~~-~Pv~~~~~~l~~~~~~~e~~~~R~~~Hs~~Dd~~~yr~~~e~~~~~~~ddP~~~~~ 297 (353)
++. |+.+|.-..+-|.+|+... ..+++ +..|||-.||++.|.|. +..+-.++..++....+..+.
T Consensus 474 VNaDD~EAV~~vc~vAAeWR~tFh~DvVV------------DlVcyRR~GHNE~DeP~-FTQPlMYk~I~k~~~~l~~Y~ 540 (1017)
T KOG0450|consen 474 VNADDPEAVMHVCKVAAEWRKTFHKDVVV------------DLVCYRRHGHNEIDEPM-FTQPLMYKQIRKHKPVLQKYA 540 (1017)
T ss_pred ecCCChHHHHHHHHHHHHHHHHhccCeEE------------EEEEEeecCCCcccCcc-ccchHHHHHHHcCCcHHHHHH
Confidence 666 8889999999999997555 88999 99999999999999875 788999999998875667999
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy16520 298 TLLFKKKLWSEKQDEQLKKESKQLVLNSIRISEKKL 333 (353)
Q Consensus 298 ~~l~~~g~~t~~e~~~~~~e~~~~v~~a~~~a~~~~ 333 (353)
+.|+.+|..|.+++++.++.+....++|++.++...
T Consensus 541 ekLl~egtvs~~evd~~~~k~~~I~eeafe~sKd~~ 576 (1017)
T KOG0450|consen 541 EKLLSEGTVSQQEVDEEIKKYDNILEEAFERSKDYK 576 (1017)
T ss_pred HHHHhcCcccHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999988653
No 29
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.36 E-value=6.5e-13 Score=137.97 Aligned_cols=170 Identities=15% Similarity=0.081 Sum_probs=127.9
Q ss_pred CCc-cccccCCCchhHHHHHHhcCC---CCCeeE--ecCcchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccccCC
Q psy16520 61 GRI-SFYMTSSGEEGSHVGSAAALD---PEDLVY--AQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQ 134 (353)
Q Consensus 61 Gk~-g~~h~~~G~Ea~~vg~~~al~---~~D~v~--~~yR~~g~~la~G~~~~~~~~~~~g~~~g~s~G~~~p~h~~~~e 134 (353)
++. |+.|++.|+ +.++++.++. |.|+++ ++||++++.|++|.++..++++.+|+.+|+++++..+.++
T Consensus 36 ~~~~Gh~~~~lg~--vel~~al~~~f~~~~D~ii~d~ghr~~~~~l~~G~~~~~~~~~~~g~~~G~~~~~~s~~~~---- 109 (581)
T PRK12315 36 SAHGGHVGPNLGV--VELTIALHYVFNSPKDKIVWDVSHQSYPHKMLTGRKEAFLDPDHYDDVTGYTNPEESEHDF---- 109 (581)
T ss_pred HhcCCCcCcchhH--HHHHHHHHhhcCCCCCcEEEecCCchHHHHHHcCCccchhhHHHcCCCCCCCCCCCCCCCC----
Confidence 444 699999998 6677777887 899999 9999999999999999999999999999999887743322
Q ss_pred CCccccccccccchhhhhhhhcceeeecCCcEEEEEeecchhh----------hh------hcccccccccccccccC--
Q psy16520 135 HHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI----------VT------MATPFQPQRRNSMEEMG-- 196 (353)
Q Consensus 135 ~n~~~~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~----------a~------is~~~~~q~~~~~~~~~-- 196 (353)
..+++++++++.|+|.|+|.++.+.+.+++|++|||+.+ |+ |.+..+|++...++...
T Consensus 110 ----~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~Ii~dN~~si~~~~~~~~ 185 (581)
T PRK12315 110 ----FTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIVNDNQMSIAENHGGLY 185 (581)
T ss_pred ----cCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHhhCCCEEEEEECCCCcCCCCCchhh
Confidence 245678889999999999999888889999999999999 22 56666666654221000
Q ss_pred ------c-------ccCCCcccccccccccccccCCCcc-----ChhHhhcCHHHHHHHHHcC-CCeehhHHHHhhccCC
Q psy16520 197 ------S-------RPEGLAWVFQPLELTETTIGHHSTS-----DDSTAYRSKSEVQEYEINN-NPILRFKTLLFKKKLW 257 (353)
Q Consensus 197 ------~-------a~rgp~~~~~~~~~~~~r~~~hs~~-----D~~~~yr~~~ea~~~~r~~-~Pv~~~~~~l~~~~~~ 257 (353)
+ ..+..+| |+++.. |+.+++++.+++ |++ +|+++
T Consensus 186 ~~l~~~~~~~~~~~~~~~~a~------------G~~~~~v~DG~D~~~l~~a~~~a----~~~~gP~~i----------- 238 (581)
T PRK12315 186 KNLKELRDTNGQSENNLFKAM------------GLDYRYVEDGNDIESLIEAFKEV----KDIDHPIVL----------- 238 (581)
T ss_pred hhhhhhhhcccccHHHHHHhc------------CCeEEEeeCCCCHHHHHHHHHHH----HhCCCCEEE-----------
Confidence 0 0111222 555432 887888777664 344 99999
Q ss_pred CHHHHHHhhcc
Q psy16520 258 SEEQDEQIGHH 268 (353)
Q Consensus 258 ~e~~~~R~~~H 268 (353)
++.|+|-.|.
T Consensus 239 -~~~T~kG~G~ 248 (581)
T PRK12315 239 -HIHTLKGKGY 248 (581)
T ss_pred -EEEeecCCCC
Confidence 9999988763
No 30
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=99.35 E-value=5.6e-14 Score=150.16 Aligned_cols=137 Identities=12% Similarity=0.095 Sum_probs=113.3
Q ss_pred HHHHHhhcCCCCC-CCC-----------CCCcc---ccccCCCCccccccccccchhh----hhhhhccee--eecCCcE
Q psy16520 108 QMIDQLYGNIGSS-DKG-----------KQMPV---HYGSRQHHFVTISSPLATQLPQ----AVGSAYAYK--LKKNEKV 166 (353)
Q Consensus 108 ~~~~~~~g~~~g~-s~G-----------~~~p~---h~~~~e~n~~~~ss~vg~q~~~----a~G~A~g~~--~~~g~~v 166 (353)
+.+..+|.+|+++ ++| |++|+ +|+| +||+|+++|+...+.+. .+|.+|+++ .+||+|+
T Consensus 343 ~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvv-eNNqyg~tT~~~~~~s~~~~sd~Ak~ygiP~~~VDG~D~ 421 (929)
T TIGR00239 343 KVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHII-INNQIGFTTNPLDARSTPYCSDLAKMIQAPIFHVNADDP 421 (929)
T ss_pred ceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEE-EeCCEEEEEcHHHhcCccCHHHHheecCCCEEEECCCCH
Confidence 3455666667774 577 89997 9999 99999999986655532 378888887 8999999
Q ss_pred EEEEeecchhhhhhcccccccccccccccCcccCCCcccccccccccccccCCCccChhHhhcCHHHHHHHHHcCCCeeh
Q psy16520 167 VIVYFGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLAWVFQPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPILR 246 (353)
Q Consensus 167 ~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~~a~rgp~~~~~~~~~~~~r~~~hs~~D~~~~yr~~~ea~~~~r~~~Pv~~ 246 (353)
.+|+.....+. +..+.++||.+ ||+.|||+.+|+.+|+...|++ .+...+.+..+|+.+
T Consensus 422 ~AV~~a~~~Av----------------e~~r~g~gPvl----IE~~tYR~~GHne~D~p~~yrp-~~~~~i~~~~dPi~~ 480 (929)
T TIGR00239 422 EAVAFATRLAV----------------EYRNTFKRDVF----IDLVGYRRHGHNEADEPSATQP-LMYQKIKKHPTPRKV 480 (929)
T ss_pred HHHHHHHHHHH----------------HHHHhcCCCEE----EEEEeccCCCCCCCCCCccCCH-HHHHHHHhCCCHHHH
Confidence 99999988776 57889999999 9999999999999988777998 454555433499999
Q ss_pred hHHHHhhccCCCHHHHHHhh
Q psy16520 247 FKTLLFKKKLWSEEQDEQIG 266 (353)
Q Consensus 247 ~~~~l~~~~~~~e~~~~R~~ 266 (353)
|+++|+++|+|++++...+.
T Consensus 481 ~~~~Li~~Gv~te~e~~~i~ 500 (929)
T TIGR00239 481 YADKLVSEGVATEEDVTEMV 500 (929)
T ss_pred HHHHHHHcCCCCHHHHHHHH
Confidence 99999999999999998885
No 31
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=99.00 E-value=1.5e-12 Score=121.86 Aligned_cols=97 Identities=9% Similarity=0.010 Sum_probs=80.4
Q ss_pred HHHHhhcCCCCC-CCC-----------CCCc---cccccCCCCccccccccccchhh----hhhhhccee--eecCCcEE
Q psy16520 109 MIDQLYGNIGSS-DKG-----------KQMP---VHYGSRQHHFVTISSPLATQLPQ----AVGSAYAYK--LKKNEKVV 167 (353)
Q Consensus 109 ~~~~~~g~~~g~-s~G-----------~~~p---~h~~~~e~n~~~~ss~vg~q~~~----a~G~A~g~~--~~~g~~v~ 167 (353)
.+..+|.+|+++ ++| +++| ++|+| +||.|+++++...+.+. .++.+|+++ .+||+|+.
T Consensus 141 ~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvv-eNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~ 219 (265)
T cd02016 141 VLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIV-VNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPE 219 (265)
T ss_pred eEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEE-EeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHH
Confidence 455556556664 466 7777 99999 99999999999888753 378888887 89999999
Q ss_pred EEEeecchhhhhhcccccccccccccccCcccCCCcccccccccccccccCCCccChhH
Q psy16520 168 IVYFGEGAAIVTMATPFQPQRRNSMEEMGSRPEGLAWVFQPLELTETTIGHHSTSDDST 226 (353)
Q Consensus 168 ~v~~Gdg~~~a~is~~~~~q~~~~~~~~~~a~rgp~~~~~~~~~~~~r~~~hs~~D~~~ 226 (353)
.|+.....+. +..+.+++|.+ ||+.|||+..|+..|+..
T Consensus 220 aV~~a~~~A~----------------~~~r~g~gp~l----Ie~~tYR~~GHse~D~p~ 258 (265)
T cd02016 220 AVVRATRLAL----------------EYRQKFKKDVV----IDLVCYRRHGHNELDEPS 258 (265)
T ss_pred HHHHHHHHHH----------------HHHHhcCCCEE----EEEEEecCCCCCCcCCcc
Confidence 9999987776 57889999999 999999999999998743
No 32
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.56 E-value=1.2e-07 Score=90.58 Aligned_cols=83 Identities=17% Similarity=0.185 Sum_probs=70.1
Q ss_pred CcchHHHHHcCCCHH-HHHHHhhcCCC------CCCCCCCCccccccCCCCccccccccccchhhhhhhhcceeeecCCc
Q psy16520 93 YRETGVLMWRGFSVE-QMIDQLYGNIG------SSDKGKQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEK 165 (353)
Q Consensus 93 yR~~g~~la~G~~~~-~~~~~~~g~~~------g~s~G~~~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~~~~g~~ 165 (353)
||||+++...|.++. .++.+++|+++ ||+.+..+++++.. .|...+.++.|.+.++|.|++++++..+.++
T Consensus 15 ~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~--~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~~ 92 (300)
T PRK11864 15 YPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSP--LTVPVLHTAFAATAAVASGIEEALKARGEKG 92 (300)
T ss_pred cCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCccc--ccccceeehhhChHHHHHHHHHHHHhhCCCC
Confidence 899999999998887 88889988765 88888878777666 3788899999999999999999988665555
Q ss_pred EEEE-Eeecchhh
Q psy16520 166 VVIV-YFGEGAAI 177 (353)
Q Consensus 166 v~~v-~~Gdg~~~ 177 (353)
+.+| +.|||++.
T Consensus 93 ~~Vva~~GDG~~~ 105 (300)
T PRK11864 93 VIVVGWAGDGGTA 105 (300)
T ss_pred cEEEEEEccCccc
Confidence 6555 99999998
No 33
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=98.55 E-value=1.7e-07 Score=85.98 Aligned_cols=140 Identities=18% Similarity=0.266 Sum_probs=98.7
Q ss_pred CCchhHHHHHHhcCCC-CCeeEecCcchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccccCCCCccccccccccch
Q psy16520 70 SGEEGSHVGSAAALDP-EDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLATQL 148 (353)
Q Consensus 70 ~G~Ea~~vg~~~al~~-~D~v~~~yR~~g~~la~G~~~~~~~~~~~g~~~g~s~G~~~p~h~~~~e~n~~~~ss~vg~q~ 148 (353)
.||++.++.+...|.. .|.+++.|+.+.. | +++.+.++ + ...| +|+|......++...++++|.++
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~----g--l~~lf~qf-s----~~gg--~psH~~~~tpGi~~~~G~LG~gL 68 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDEE----G--MRKLFKQF-S----FPGG--IPSHAAPETPGSIHEGGELGYSL 68 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccHH----H--HHHHHHhc-C----CCCC--CCCCCcccCCCeeecccchhhHH
Confidence 5899998888888887 4999999997541 2 24556664 1 2334 89998876678889999999999
Q ss_pred hhhhhhhcceeeecCCcEEEEEeecchhh----hh--------------------------hcccccccccccccccCcc
Q psy16520 149 PQAVGSAYAYKLKKNEKVVIVYFGEGAAI----VT--------------------------MATPFQPQRRNSMEEMGSR 198 (353)
Q Consensus 149 ~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~----a~--------------------------is~~~~~q~~~~~~~~~~a 198 (353)
++|+|.++ .+.+.+++|++|||++. |+ |++|+...... ...+.
T Consensus 69 s~A~G~a~----d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~---~e~l~ 141 (227)
T cd02011 69 SHAYGAVF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARIS---HEELE 141 (227)
T ss_pred HHHHHhhh----cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccC---chhHH
Confidence 99999875 34567999999999988 22 33333322110 12344
Q ss_pred cCCCcccccccccccccccCCCcc----ChhHhhcCHHHHHHHHHcC
Q psy16520 199 PEGLAWVFQPLELTETTIGHHSTS----DDSTAYRSKSEVQEYEINN 241 (353)
Q Consensus 199 ~rgp~~~~~~~~~~~~r~~~hs~~----D~~~~yr~~~ea~~~~r~~ 241 (353)
.+..+| |.+... |+.++|+.+.++.+++|..
T Consensus 142 ~~~~~y------------G~~~~~VDG~D~~av~~~~a~a~~~~~~~ 176 (227)
T cd02011 142 ALFRGY------------GYEPYFVEGDDPETMHQAMAATLDWAIEE 176 (227)
T ss_pred HHHHhC------------CCceEEECCCCHHHHHHHHHHHHHHHHHH
Confidence 454555 555543 8999999999999998654
No 34
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=97.49 E-value=2.2e-05 Score=84.00 Aligned_cols=115 Identities=12% Similarity=-0.000 Sum_probs=89.1
Q ss_pred CCCc---cccccCCCCccccccccccch----hhhhhhhccee--eecCCcEEEEEeecchhhhhhcccccccccccccc
Q psy16520 124 KQMP---VHYGSRQHHFVTISSPLATQL----PQAVGSAYAYK--LKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEE 194 (353)
Q Consensus 124 ~~~p---~h~~~~e~n~~~~ss~vg~q~----~~a~G~A~g~~--~~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~ 194 (353)
|+.+ .+++| .||.++++|.....- ..-++.++.++ .+||+|+.+|...-.-+. +
T Consensus 675 ~~y~tGGtIhvi-vNNqiGftT~p~~~Rss~y~td~ak~~~~PifhVNGdDpeAv~~va~lA~----------------~ 737 (1228)
T PRK12270 675 RGYRTGGTIHIV-VNNQVGFTTAPESSRSSEYATDVAKMIQAPIFHVNGDDPEAVVRVARLAF----------------E 737 (1228)
T ss_pred cCCCCCCeEEEE-EecCcccccCccccccchhhHHHHhhcCCCEEeECCCCHHHHHHHHHHHH----------------H
Confidence 5554 56666 699999999876332 22356666666 789999998887765554 4
Q ss_pred cCcccCCCcccccccccccccccCC------CccChhHhhcCHHHHHHHHHcCCCeehhHHHHhhccCCCHHHHHHhh
Q psy16520 195 MGSRPEGLAWVFQPLELTETTIGHH------STSDDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEEQDEQIG 266 (353)
Q Consensus 195 ~~~a~rgp~~~~~~~~~~~~r~~~h------s~~D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~~~~~~~e~~~~R~~ 266 (353)
.....+++.+ |++.|||..+| |.+||. .|+..++....+ + ++++.|+.+|.+|+++..+.-
T Consensus 738 yr~~f~~dVv----IdlvcYRrrGHNEgDdPSmtqP~-mY~~i~~~~svr-k-----~yte~Ligrgdit~ee~e~~l 804 (1228)
T PRK12270 738 YRQRFHKDVV----IDLVCYRRRGHNEGDDPSMTQPL-MYDLIDAKRSVR-K-----LYTEALIGRGDITVEEAEQAL 804 (1228)
T ss_pred HHHHcCCCeE----EEEEEEeecCCCCCCCcccCCch-hhhhhhhcchHH-H-----HHHHHHhhcCCCCHHHHHHHH
Confidence 6678899999 99999999999 777884 899888876653 3 899999999999999887763
No 35
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=97.31 E-value=0.00047 Score=73.13 Aligned_cols=104 Identities=17% Similarity=0.146 Sum_probs=69.3
Q ss_pred CCccccccccccchhhhhhhhcceeeec----------CCcEEEEEeecchhh----------hh---------------
Q psy16520 135 HHFVTISSPLATQLPQAVGSAYAYKLKK----------NEKVVIVYFGEGAAI----------VT--------------- 179 (353)
Q Consensus 135 ~n~~~~ss~vg~q~~~a~G~A~g~~~~~----------g~~v~~v~~Gdg~~~----------a~--------------- 179 (353)
.++...++++|.+++.|+|.|++.++.+ .+..++|+.|||+.. |+
T Consensus 103 ~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~ 182 (653)
T TIGR00232 103 AGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNR 182 (653)
T ss_pred CCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 3566678999999999999999988431 367899999999998 21
Q ss_pred --hcccccccccccccccCcccCCCcccccccccccccccCCCcc-----ChhHhhcCHHHHHHHHHcCCCeehhHHHHh
Q psy16520 180 --MATPFQPQRRNSMEEMGSRPEGLAWVFQPLELTETTIGHHSTS-----DDSTAYRSKSEVQEYEINNNPILRFKTLLF 252 (353)
Q Consensus 180 --is~~~~~q~~~~~~~~~~a~rgp~~~~~~~~~~~~r~~~hs~~-----D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~ 252 (353)
|+++.+.++ . ..++.+..+| |.++.. |+.+++++.+++.. .+++|+++
T Consensus 183 ~~i~~~~~~~~-~----~~~~~~~~a~------------Gw~~~~v~DG~D~~ai~~A~~~a~~--~~~~P~~I------ 237 (653)
T TIGR00232 183 ISIDGAVDGSF-T----EDVAKRFEAY------------GWEVLEVEDGHDLAAIDAAIEEAKA--SKDKPTLI------ 237 (653)
T ss_pred eeecccccccc-C----ccHHHHHHhc------------CCcEEEeCCCCCHHHHHHHHHHHHh--CCCCCEEE------
Confidence 334433332 1 2344444555 555432 77777765554421 11379999
Q ss_pred hccCCCHHHHHHhhccC
Q psy16520 253 KKKLWSEEQDEQIGHHS 269 (353)
Q Consensus 253 ~~~~~~e~~~~R~~~Hs 269 (353)
++.|++-.|.+
T Consensus 238 ------~~~T~~g~G~~ 248 (653)
T TIGR00232 238 ------EVTTTIGFGSP 248 (653)
T ss_pred ------EEEeeecccCc
Confidence 99998877764
No 36
>PRK12754 transketolase; Reviewed
Probab=96.96 E-value=0.002 Score=68.30 Aligned_cols=103 Identities=18% Similarity=0.188 Sum_probs=71.0
Q ss_pred Cccccccccccchhhhhhhhcceeeec----------CCcEEEEEeecchhh----------hh----------------
Q psy16520 136 HFVTISSPLATQLPQAVGSAYAYKLKK----------NEKVVIVYFGEGAAI----------VT---------------- 179 (353)
Q Consensus 136 n~~~~ss~vg~q~~~a~G~A~g~~~~~----------g~~v~~v~~Gdg~~~----------a~---------------- 179 (353)
..-..++++|.+++.|+|.|++.++.+ -+..++|+.|||+.. |+
T Consensus 108 gve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~ 187 (663)
T PRK12754 108 GVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGI 187 (663)
T ss_pred CccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCC
Confidence 455678899999999999999988543 267899999999998 21
Q ss_pred -hcccccccccccccccCcccCCCcccccccccccccccCCCcc-----ChhHhhcCHHHHHHHHHcCCCeehhHHHHhh
Q psy16520 180 -MATPFQPQRRNSMEEMGSRPEGLAWVFQPLELTETTIGHHSTS-----DDSTAYRSKSEVQEYEINNNPILRFKTLLFK 253 (353)
Q Consensus 180 -is~~~~~q~~~~~~~~~~a~rgp~~~~~~~~~~~~r~~~hs~~-----D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~~ 253 (353)
|+++++.++. ..+..|..+| |.++.. |+.+++++.+++.. +.++|+++
T Consensus 188 ~idg~~~~~~~-----~~~~~r~~a~------------Gw~vi~vvDG~D~~ai~~A~~~a~~--~~~~Pt~I------- 241 (663)
T PRK12754 188 SIDGHVEGWFT-----DDTAMRFEAY------------GWHVIRGIDGHDADSIKRAVEEARA--VTDKPSLL------- 241 (663)
T ss_pred ccCcchhhccC-----ccHHHHHHhc------------CCeEEeeECCCCHHHHHHHHHHHHh--cCCCCEEE-------
Confidence 3444443321 3445555555 665543 77777665555432 13489999
Q ss_pred ccCCCHHHHHHhhccC
Q psy16520 254 KKLWSEEQDEQIGHHS 269 (353)
Q Consensus 254 ~~~~~e~~~~R~~~Hs 269 (353)
++.|++-.|.+
T Consensus 242 -----~~~T~~g~G~~ 252 (663)
T PRK12754 242 -----MCKTIIGFGSP 252 (663)
T ss_pred -----EEEeeeccCcc
Confidence 99998877765
No 37
>PTZ00089 transketolase; Provisional
Probab=96.92 E-value=0.003 Score=67.19 Aligned_cols=125 Identities=17% Similarity=0.119 Sum_probs=80.6
Q ss_pred cccccccccchhhhhhhhcceeeecC----------CcEEEEEeecchhh----------hh-------hcccccccccc
Q psy16520 138 VTISSPLATQLPQAVGSAYAYKLKKN----------EKVVIVYFGEGAAI----------VT-------MATPFQPQRRN 190 (353)
Q Consensus 138 ~~~ss~vg~q~~~a~G~A~g~~~~~g----------~~v~~v~~Gdg~~~----------a~-------is~~~~~q~~~ 190 (353)
-..++++|.+++.|+|.|+|.++.+. +..++|+.|||+.. |+ |.+..+|++..
T Consensus 112 ~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i 191 (661)
T PTZ00089 112 EVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKITI 191 (661)
T ss_pred ccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCccc
Confidence 34588999999999999999986432 67899999999998 11 23333333332
Q ss_pred ccc-----ccCcccCCCcccccccccccccccCCCc-----c-ChhHhhcCHHHHHHHHHcCCCeehhHHHHhhccCCCH
Q psy16520 191 SME-----EMGSRPEGLAWVFQPLELTETTIGHHST-----S-DDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSE 259 (353)
Q Consensus 191 ~~~-----~~~~a~rgp~~~~~~~~~~~~r~~~hs~-----~-D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~~~~~~~e 259 (353)
.++ ......+..+| |.++. . |..+++++.+++.+. .++|+++ +
T Consensus 192 ~~~~~~~~~~~~~~~f~a~------------G~~~i~v~dG~~D~~~l~~a~~~a~~~--~~~P~~I------------~ 245 (661)
T PTZ00089 192 DGNTDLSFTEDVEKKYEAY------------GWHVIEVDNGNTDFDGLRKAIEEAKKS--KGKPKLI------------I 245 (661)
T ss_pred ccCcccccCccHHHHHHhc------------CCcEEEeCCCCCCHHHHHHHHHHHHhc--CCCcEEE------------E
Confidence 110 01122222233 33332 2 777888877776532 2589999 9
Q ss_pred HHHHHhhccCCCCCcc---ccCCHHHHHHHHh
Q psy16520 260 EQDEQIGHHSTSDDST---AYRSKSEVQEYEI 288 (353)
Q Consensus 260 ~~~~R~~~Hs~~Dd~~---~yr~~~e~~~~~~ 288 (353)
+.|.+-.||...+... .+.+.++++.+.+
T Consensus 246 ~~T~kG~G~~~e~~~~~H~~~~~~~~~~~~~~ 277 (661)
T PTZ00089 246 VKTTIGYGSSKAGTEKVHGAPLGDEDIAQVKE 277 (661)
T ss_pred EEeeecCCCCcCCCCCccCCCCCHHHHHHHHH
Confidence 9999999976655432 3667788877654
No 38
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=96.61 E-value=5.8e-05 Score=78.93 Aligned_cols=165 Identities=10% Similarity=-0.046 Sum_probs=94.8
Q ss_pred CCccchhccccc-cccCCCCCCccCC------CCCHHHHH--HHHHHHHH--HHhHHH--HHHHHHHcCCc-cc------
Q psy16520 6 ASGPCFKKERLG-RYSGSNGQSSHLS------NVDNETNI--RMYKTMVT--LNEMDK--VMYESQRQGRI-SF------ 65 (353)
Q Consensus 6 ~~~~~~~~g~~~-~~~~~~Gqea~~~------~l~~d~l~--~~yr~m~~--~R~~d~--~~~~l~~~Gk~-g~------ 65 (353)
|.--++.+++++ .++++.|+-...+ ..+.|.++ ..||.+.. +++.+. .+.+++ |+. |+
T Consensus 28 r~~~~~~~~~~~Gh~~~~lg~vel~~al~~~f~~~~D~ii~d~ghr~~~~~l~~G~~~~~~~~~~~--g~~~G~~~~~~s 105 (581)
T PRK12315 28 RTALLEKDSAHGGHVGPNLGVVELTIALHYVFNSPKDKIVWDVSHQSYPHKMLTGRKEAFLDPDHY--DDVTGYTNPEES 105 (581)
T ss_pred HHHHHHHHHhcCCCcCcchhHHHHHHHHHhhcCCCCCcEEEecCCchHHHHHHcCCccchhhHHHc--CCCCCCCCCCCC
Confidence 334456678884 8889999822111 22478888 88998753 344443 344433 221 22
Q ss_pred cccC--CC----chhHHHHHHhcCC--CCCeeEecCcchHHHHHcCCCHHHHHHHhhcCCCCCCCC-----------CCC
Q psy16520 66 YMTS--SG----EEGSHVGSAAALD--PEDLVYAQYRETGVLMWRGFSVEQMIDQLYGNIGSSDKG-----------KQM 126 (353)
Q Consensus 66 ~h~~--~G----~Ea~~vg~~~al~--~~D~v~~~yR~~g~~la~G~~~~~~~~~~~g~~~g~s~G-----------~~~ 126 (353)
.|.. .| +-++++|++.+.+ ..+. ...++.+||..+.| ++.
T Consensus 106 ~~~~~~~g~~~~~ls~A~G~A~A~k~~~~~~---------------------~vv~~iGDG~~~eG~~~EAln~A~~~k~ 164 (581)
T PRK12315 106 EHDFFTVGHTSTSIALATGLAKARDLKGEKG---------------------NIIAVIGDGSLSGGLALEGLNNAAELKS 164 (581)
T ss_pred CCCCcCCCcHHHHHHHHHHHHHHHHhcCCCC---------------------eEEEEECchhhhcchHHHHHHHHHhhCC
Confidence 2211 12 2333445444432 1111 12222334444444 668
Q ss_pred ccccccCCCCccccccccccch---------h----hhhhhhccee--ee-cCCcEEEEEeecchhhhhhcccccccccc
Q psy16520 127 PVHYGSRQHHFVTISSPLATQL---------P----QAVGSAYAYK--LK-KNEKVVIVYFGEGAAIVTMATPFQPQRRN 190 (353)
Q Consensus 127 p~h~~~~e~n~~~~ss~vg~q~---------~----~a~G~A~g~~--~~-~g~~v~~v~~Gdg~~~a~is~~~~~q~~~ 190 (353)
|++|++ +||.|+++++++... + .....+||++ .+ ||+|+..++..-.
T Consensus 165 ~li~Ii-~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~---------------- 227 (581)
T PRK12315 165 NLIIIV-NDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFK---------------- 227 (581)
T ss_pred CEEEEE-ECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHH----------------
Confidence 999999 899999999987432 1 1245777776 34 8888777664432
Q ss_pred cccccCcccCCCcccccccccccccccC
Q psy16520 191 SMEEMGSRPEGLAWVFQPLELTETTIGH 218 (353)
Q Consensus 191 ~~~~~~~a~rgp~~~~~~~~~~~~r~~~ 218 (353)
..+.+++|.+ |++.|+|-.+
T Consensus 228 ----~a~~~~gP~~----i~~~T~kG~G 247 (581)
T PRK12315 228 ----EVKDIDHPIV----LHIHTLKGKG 247 (581)
T ss_pred ----HHHhCCCCEE----EEEEeecCCC
Confidence 2345678999 9999998644
No 39
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=96.33 E-value=0.0017 Score=58.52 Aligned_cols=40 Identities=30% Similarity=0.365 Sum_probs=35.8
Q ss_pred cccccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 138 VTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 138 ~~~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
...++++|.++|.|+|.|++.+..+.+..++|++|||+..
T Consensus 71 ~~~~G~lG~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~ 110 (195)
T cd02007 71 AFGTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALT 110 (195)
T ss_pred eECCCchhhhHHHHHHHHHHHHHhCCCCeEEEEEcccccc
Confidence 3468899999999999999999877788999999999986
No 40
>PRK12753 transketolase; Reviewed
Probab=96.26 E-value=0.0024 Score=67.81 Aligned_cols=109 Identities=18% Similarity=0.125 Sum_probs=72.4
Q ss_pred Cccccccccccchhhhhhhhcceeeec----------CCcEEEEEeecchhh----------hh-------hcccccccc
Q psy16520 136 HFVTISSPLATQLPQAVGSAYAYKLKK----------NEKVVIVYFGEGAAI----------VT-------MATPFQPQR 188 (353)
Q Consensus 136 n~~~~ss~vg~q~~~a~G~A~g~~~~~----------g~~v~~v~~Gdg~~~----------a~-------is~~~~~q~ 188 (353)
++...++++|.+++.|+|.|+|.++.+ .+..++|+.|||+.. |+ |.+..+|++
T Consensus 108 gve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~ 187 (663)
T PRK12753 108 GVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGI 187 (663)
T ss_pred CcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCC
Confidence 556688999999999999999988543 157999999999998 11 223333333
Q ss_pred ccccc-----ccCcccCCCcccccccccccccccCCCcc-----ChhHhhcCHHHHHHHHHcCCCeehhHHHHhhccCCC
Q psy16520 189 RNSME-----EMGSRPEGLAWVFQPLELTETTIGHHSTS-----DDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWS 258 (353)
Q Consensus 189 ~~~~~-----~~~~a~rgp~~~~~~~~~~~~r~~~hs~~-----D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~~~~~~~ 258 (353)
...+. ......+..+| |.++.. |+.+++++.+++.. .+++|+++
T Consensus 188 ~i~~~~~~~~~~~~~~~f~a~------------Gw~~~~~vDGhD~~~i~~a~~~a~~--~~~~P~~I------------ 241 (663)
T PRK12753 188 SIDGETEGWFTDDTAKRFEAY------------HWHVIHEIDGHDPQAIKEAILEAQS--VKDKPSLI------------ 241 (663)
T ss_pred cCCCChhhhcChhHHHHHHHc------------CCeEEceeCCCCHHHHHHHHHHHHH--CCCCeEEE------------
Confidence 22110 02233344444 565542 88888888877654 23589999
Q ss_pred HHHHHHhhccCC
Q psy16520 259 EEQDEQIGHHST 270 (353)
Q Consensus 259 e~~~~R~~~Hs~ 270 (353)
++.|..-.|++.
T Consensus 242 ~~~T~kG~G~~~ 253 (663)
T PRK12753 242 ICRTIIGFGSPN 253 (663)
T ss_pred EEEEeecCCCCc
Confidence 888887777763
No 41
>PRK05899 transketolase; Reviewed
Probab=96.08 E-value=0.0036 Score=66.17 Aligned_cols=124 Identities=17% Similarity=0.148 Sum_probs=77.7
Q ss_pred CccccccccccchhhhhhhhcceeeecC----------CcEEEEEeecchhh----------hh-------hcccccccc
Q psy16520 136 HFVTISSPLATQLPQAVGSAYAYKLKKN----------EKVVIVYFGEGAAI----------VT-------MATPFQPQR 188 (353)
Q Consensus 136 n~~~~ss~vg~q~~~a~G~A~g~~~~~g----------~~v~~v~~Gdg~~~----------a~-------is~~~~~q~ 188 (353)
.....++++|.++|.|+|.|++.++.+. +..++|+.|||+.. |+ |.+..+|.+
T Consensus 112 ~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~ 191 (624)
T PRK05899 112 GVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRI 191 (624)
T ss_pred CeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCC
Confidence 3445688999999999999999875544 78999999999987 11 333334444
Q ss_pred ccccc-----ccCcccCCCcccccccccccccccCCCcc----ChhHhhcCHHHHHHHHHcCCCeehhHHHHhhccCCCH
Q psy16520 189 RNSME-----EMGSRPEGLAWVFQPLELTETTIGHHSTS----DDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSE 259 (353)
Q Consensus 189 ~~~~~-----~~~~a~rgp~~~~~~~~~~~~r~~~hs~~----D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~~~~~~~e 259 (353)
..... ....+.+..+| |.++.. |+.+++++.+++.+ .++|+++ +
T Consensus 192 ~~~~~~~~~~~~~~~~~~~a~------------G~~~~~VdG~d~~~l~~al~~a~~---~~~P~vI------------~ 244 (624)
T PRK05899 192 SIDGPTEGWFTEDVKKRFEAY------------GWHVIEVDGHDVEAIDAAIEEAKA---STKPTLI------------I 244 (624)
T ss_pred cccccccccccccHHHHhccC------------CCeEEEECCCCHHHHHHHHHHHHh---cCCCEEE------------E
Confidence 32100 01112222222 444433 66667766666542 2489999 9
Q ss_pred HHHHHhhccCCCCCccccCC----HHHHHHH
Q psy16520 260 EQDEQIGHHSTSDDSTAYRS----KSEVQEY 286 (353)
Q Consensus 260 ~~~~R~~~Hs~~Dd~~~yr~----~~e~~~~ 286 (353)
+.|.+-.||+...+...|.. +++++.+
T Consensus 245 v~t~kg~g~~~~e~~~~~H~~~~~~~~~~~~ 275 (624)
T PRK05899 245 AKTIIGKGAPNKEGTHKVHGAPLGAEEIAAA 275 (624)
T ss_pred EEeEeccCCccccCCCcccCCCCCHHHHHHH
Confidence 99999999986544434543 4555544
No 42
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=95.51 E-value=0.0036 Score=58.66 Aligned_cols=109 Identities=18% Similarity=0.094 Sum_probs=70.1
Q ss_pred CccccccccccchhhhhhhhcceeeecCCcEEEEEeecchhh----------hh-------hccccccccccccc-----
Q psy16520 136 HFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI----------VT-------MATPFQPQRRNSME----- 193 (353)
Q Consensus 136 n~~~~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~----------a~-------is~~~~~q~~~~~~----- 193 (353)
+....++++|.++|.|+|.|++.+..+.+..++|..|||+.. |+ +.+..+|.+.....
T Consensus 99 g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~ 178 (255)
T cd02012 99 GVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDIL 178 (255)
T ss_pred CeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhcc
Confidence 445567889999999999999998777788999999999998 11 33333443332100
Q ss_pred -ccCcccCCCcccccccccccccccCCCcc----ChhHhhcCHHHHHHHHHcCCCeehhHHHHhhccCCCHHHHHHhhcc
Q psy16520 194 -EMGSRPEGLAWVFQPLELTETTIGHHSTS----DDSTAYRSKSEVQEYEINNNPILRFKTLLFKKKLWSEEQDEQIGHH 268 (353)
Q Consensus 194 -~~~~a~rgp~~~~~~~~~~~~r~~~hs~~----D~~~~yr~~~ea~~~~r~~~Pv~~~~~~l~~~~~~~e~~~~R~~~H 268 (353)
....+.+..++ |.++.. |..+.+.+.+++.+. .++|+++ ++.|.+-.||
T Consensus 179 ~~~~~~~~~~a~------------G~~~~~v~G~d~~~l~~al~~a~~~--~~~P~~I------------~~~t~kg~g~ 232 (255)
T cd02012 179 FTEDLAKKFEAF------------GWNVIEVDGHDVEEILAALEEAKKS--KGKPTLI------------IAKTIKGKGV 232 (255)
T ss_pred CchhHHHHHHHc------------CCeEEEECCCCHHHHHHHHHHHHHc--CCCCEEE------------EEEeeccccc
Confidence 01111222222 333332 666777777666532 2589999 9999888888
Q ss_pred CC
Q psy16520 269 ST 270 (353)
Q Consensus 269 s~ 270 (353)
+.
T Consensus 233 ~~ 234 (255)
T cd02012 233 PF 234 (255)
T ss_pred Cc
Confidence 74
No 43
>PLN02790 transketolase
Probab=95.41 E-value=0.0047 Score=65.58 Aligned_cols=42 Identities=24% Similarity=0.387 Sum_probs=36.0
Q ss_pred Cccccccccccchhhhhhhhcceeee----cC------CcEEEEEeecchhh
Q psy16520 136 HFVTISSPLATQLPQAVGSAYAYKLK----KN------EKVVIVYFGEGAAI 177 (353)
Q Consensus 136 n~~~~ss~vg~q~~~a~G~A~g~~~~----~g------~~v~~v~~Gdg~~~ 177 (353)
++...++++|.+++.|+|.|+|.++. ++ +..++|++|||+..
T Consensus 99 gi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~ 150 (654)
T PLN02790 99 GIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQM 150 (654)
T ss_pred CccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCccc
Confidence 56778899999999999999999842 22 57899999999999
No 44
>PRK05261 putative phosphoketolase; Provisional
Probab=94.28 E-value=0.033 Score=59.90 Aligned_cols=49 Identities=22% Similarity=0.352 Sum_probs=38.9
Q ss_pred CCccccccCCCCccccccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 125 QMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 125 ~~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
++|.|....--+....++++|.++++|+|.|+.. .+.+++|+.|||++.
T Consensus 125 g~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~~----~d~iv~~~vGDGE~E 173 (785)
T PRK05261 125 GIPSHAAPETPGSIHEGGELGYSLSHAYGAAFDN----PDLIVACVVGDGEAE 173 (785)
T ss_pred CcCCCCCCCCCCeeeCCCchhhHHHHHHHHHHcC----CCCEEEEEECcCchh
Confidence 5788876544577778888998888888888643 456999999999988
No 45
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=92.87 E-value=1.1 Score=41.14 Aligned_cols=71 Identities=27% Similarity=0.374 Sum_probs=49.1
Q ss_pred HcCCCHHHHHHHhhcCCCCCCCCCCCccccccCCC-CccccccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 101 WRGFSVEQMIDQLYGNIGSSDKGKQMPVHYGSRQH-HFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 101 a~G~~~~~~~~~~~g~~~g~s~G~~~p~h~~~~e~-n~~~~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
.+|.=+++-+. .|++. |-.||.|=..... ..-..++++|..+++|+|.|+|.|..+.+.-+.|..|||+..
T Consensus 83 e~G~~p~eeL~-~~~~~-----~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~ 154 (243)
T COG3959 83 EKGYFPEEELE-TFRRI-----GSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELD 154 (243)
T ss_pred HcCCCCHHHHH-HhccC-----CCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccc
Confidence 44654444333 55543 4556766333111 223346688888899999999999999999999999999998
No 46
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=91.02 E-value=0.27 Score=53.24 Aligned_cols=136 Identities=11% Similarity=0.060 Sum_probs=86.6
Q ss_pred HHHHHHhhcCCCCCCCCCCCccccccCCCCccccccccc--cchhh--hhhhhccee--eecCCcEEEEEeecchhhhhh
Q psy16520 107 EQMIDQLYGNIGSSDKGKQMPVHYGSRQHHFVTISSPLA--TQLPQ--AVGSAYAYK--LKKNEKVVIVYFGEGAAIVTM 180 (353)
Q Consensus 107 ~~~~~~~~g~~~g~s~G~~~p~h~~~~e~n~~~~ss~vg--~q~~~--a~G~A~g~~--~~~g~~v~~v~~Gdg~~~a~i 180 (353)
..++.|.|+......-.-++.+|++. ||+.|-+|... +..+. -++...+.+ .++++|+-+|.+.-.-+.
T Consensus 340 QGVV~Etlnls~~~gysvgGtiHivi--NNQiGFTTsp~~sRSt~Y~TDvAKm~~aPifHVN~DDPEAv~~a~~~A~--- 414 (906)
T COG0567 340 QGVVAETLNLSRLDGYSVGGTWHIVI--NNQIGFTTSPADARSTPYCTDVAKMIEAPIFHVNADDPEAVLFAPALAL--- 414 (906)
T ss_pred ccHHHHHHHhhCCCCcccCCeEEEEE--ecCCCCCCCcccccCCCCCCChhhccCCceeecccCCchhhhhhHHHHH---
Confidence 55788888643322122357889999 57666666511 22222 244444444 899999999977655443
Q ss_pred cccccccccccccccCcccCCCcccccccccccccccCCCccChhHhhcCHHHHHHHHHcC-CCeehhHHHHhhccCCCH
Q psy16520 181 ATPFQPQRRNSMEEMGSRPEGLAWVFQPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINN-NPILRFKTLLFKKKLWSE 259 (353)
Q Consensus 181 s~~~~~q~~~~~~~~~~a~rgp~~~~~~~~~~~~r~~~hs~~D~~~~yr~~~ea~~~~r~~-~Pv~~~~~~l~~~~~~~e 259 (353)
+....-+.+.+ |...+||..+|...|...+- ... +-...+++ .+.-++.+.|+++|.+++
T Consensus 415 -------------e~R~~F~kDvv----IDlvcYRr~GHNE~DePs~T-qP~-mY~~I~~h~t~r~~ya~~Lv~~gvis~ 475 (906)
T COG0567 415 -------------EYRNGFKKDVV----IDLVCYRRHGHNEGDEPSVT-QPL-MYQKIKKHPTVRKLYADKLIAEGVISE 475 (906)
T ss_pred -------------HHHhhcCCCee----eecccCCCCCCCcccccccc-CHH-HHHHHhcCCChhhhHHHHHHhhccccH
Confidence 11112233556 88999999999999654433 222 22333455 788889999999999999
Q ss_pred HHHHHhh
Q psy16520 260 EQDEQIG 266 (353)
Q Consensus 260 ~~~~R~~ 266 (353)
.+..++.
T Consensus 476 ~~~~~~~ 482 (906)
T COG0567 476 EEADELV 482 (906)
T ss_pred HHHHHHH
Confidence 9887764
No 47
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=88.60 E-value=0.1 Score=54.80 Aligned_cols=41 Identities=27% Similarity=0.314 Sum_probs=35.0
Q ss_pred ccccccccccchhhhhhhhcceeee-cCCcEEEEEeecchhh
Q psy16520 137 FVTISSPLATQLPQAVGSAYAYKLK-KNEKVVIVYFGEGAAI 177 (353)
Q Consensus 137 ~~~~ss~vg~q~~~a~G~A~g~~~~-~g~~v~~v~~Gdg~~~ 177 (353)
.-..++++|.++|.|+|.|++.++. +.+..++|+.|||+..
T Consensus 112 ~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~ 153 (580)
T PRK05444 112 DTFGAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALT 153 (580)
T ss_pred eeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccc
Confidence 3456789999999999999999866 4678899999999985
No 48
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=88.13 E-value=0.15 Score=49.79 Aligned_cols=40 Identities=30% Similarity=0.327 Sum_probs=28.9
Q ss_pred cccccccccchhhhhhhhcceeee----------cCCcEEEEEeecchhh
Q psy16520 138 VTISSPLATQLPQAVGSAYAYKLK----------KNEKVVIVYFGEGAAI 177 (353)
Q Consensus 138 ~~~ss~vg~q~~~a~G~A~g~~~~----------~g~~v~~v~~Gdg~~~ 177 (353)
-..++++|..++.|+|.|+|.+.. .-+.-+.|..|||+..
T Consensus 107 e~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~ 156 (332)
T PF00456_consen 107 EASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQ 156 (332)
T ss_dssp SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHH
T ss_pred EeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCcccc
Confidence 345778898889999999998632 1245789999999998
No 49
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=87.78 E-value=0.26 Score=52.18 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=35.0
Q ss_pred cccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 140 ISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 140 ~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
.+++.|.+++.|+|.|+|.++.+.+.+++|+.|||+.+
T Consensus 109 ~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~ 146 (617)
T TIGR00204 109 SAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAIT 146 (617)
T ss_pred CCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccc
Confidence 46778889999999999999888999999999999998
No 50
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=87.49 E-value=0.13 Score=54.88 Aligned_cols=81 Identities=10% Similarity=0.065 Sum_probs=54.2
Q ss_pred hhcCCCCCCCC-----------CCCcc-ccccCCCCccccccccccchhh---hhhhhccee--ee-cCCcEEEEEeecc
Q psy16520 113 LYGNIGSSDKG-----------KQMPV-HYGSRQHHFVTISSPLATQLPQ---AVGSAYAYK--LK-KNEKVVIVYFGEG 174 (353)
Q Consensus 113 ~~g~~~g~s~G-----------~~~p~-h~~~~e~n~~~~ss~vg~q~~~---a~G~A~g~~--~~-~g~~v~~v~~Gdg 174 (353)
++.++|..++| ++||. ++++ ++|.|.+++++..+... ....++|.. .+ ||+|+..+..+..
T Consensus 147 ~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~iv-d~N~~~i~~~~~~~~~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~ 225 (653)
T TIGR00232 147 VFVGDGCLQEGISYEVASLAGHLKLGKLIVLY-DSNRISIDGAVDGSFTEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIE 225 (653)
T ss_pred EEEccccccccHHHHHHHHHHHhCCCcEEEEE-eCCCeeeccccccccCccHHHHHHhcCCcEEEeCCCCCHHHHHHHHH
Confidence 33445556666 78994 4456 89999999999887532 366777765 56 8888776643321
Q ss_pred hhhhhhcccccccccccccccCcccC-CCcccccccccccccccC
Q psy16520 175 AAIVTMATPFQPQRRNSMEEMGSRPE-GLAWVFQPLELTETTIGH 218 (353)
Q Consensus 175 ~~~a~is~~~~~q~~~~~~~~~~a~r-gp~~~~~~~~~~~~r~~~ 218 (353)
..+.++ +|.+ |++.|+|-.+
T Consensus 226 --------------------~a~~~~~~P~~----I~~~T~~g~G 246 (653)
T TIGR00232 226 --------------------EAKASKDKPTL----IEVTTTIGFG 246 (653)
T ss_pred --------------------HHHhCCCCCEE----EEEEeeeccc
Confidence 223343 7999 9999998533
No 51
>PTZ00089 transketolase; Provisional
Probab=85.20 E-value=0.2 Score=53.39 Aligned_cols=91 Identities=10% Similarity=-0.024 Sum_probs=57.5
Q ss_pred CCCc-cccccCCCCccccccccccchhh---hhhhhccee--ee-cCC-cEEEEEeecchhhhhhccccccccccccccc
Q psy16520 124 KQMP-VHYGSRQHHFVTISSPLATQLPQ---AVGSAYAYK--LK-KNE-KVVIVYFGEGAAIVTMATPFQPQRRNSMEEM 195 (353)
Q Consensus 124 ~~~p-~h~~~~e~n~~~~ss~vg~q~~~---a~G~A~g~~--~~-~g~-~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~ 195 (353)
++|| +++++ ++|.+++++++..+... ....++|.. .+ ||+ |+..++..-..+.
T Consensus 175 ~~L~nLi~i~-d~N~~~i~~~~~~~~~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~------------------ 235 (661)
T PTZ00089 175 LGLEKLIVLY-DDNKITIDGNTDLSFTEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAK------------------ 235 (661)
T ss_pred hCCCCEEEEE-ECCCcccccCcccccCccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHH------------------
Confidence 6787 56777 89999999999865432 356667665 34 787 7766554433221
Q ss_pred CcccCCCcccccccccccccccCCCccChh---HhhcCHHHHHHHH
Q psy16520 196 GSRPEGLAWVFQPLELTETTIGHHSTSDDS---TAYRSKSEVQEYE 238 (353)
Q Consensus 196 ~~a~rgp~~~~~~~~~~~~r~~~hs~~D~~---~~yr~~~ea~~~~ 238 (353)
.. ..+|.+ |+++|++-.++...|.. ..+.+.++.....
T Consensus 236 ~~-~~~P~~----I~~~T~kG~G~~~e~~~~~H~~~~~~~~~~~~~ 276 (661)
T PTZ00089 236 KS-KGKPKL----IIVKTTIGYGSSKAGTEKVHGAPLGDEDIAQVK 276 (661)
T ss_pred hc-CCCcEE----EEEEeeecCCCCcCCCCCccCCCCCHHHHHHHH
Confidence 11 257999 99999987666544332 2344555655554
No 52
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=84.01 E-value=0.19 Score=45.28 Aligned_cols=67 Identities=9% Similarity=-0.048 Sum_probs=41.8
Q ss_pred CCCccccccCCCCccccccccccchhhhhhhhccee-eecCCcEEEEEeecchhhhhhcccccccccccccccCcccCCC
Q psy16520 124 KQMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYK-LKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGSRPEGL 202 (353)
Q Consensus 124 ~~~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~-~~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~~a~rgp 202 (353)
+..|+++++ +||.++++++++.......+.++... .+|++|+..+..... ..+..++|
T Consensus 124 ~~~~li~vv-dnN~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~a~~--------------------~a~~~~~P 182 (195)
T cd02007 124 LKSNMIVIL-NDNEMSISPNVGTPGNLFEELGFRYIGPVDGHNIEALIKVLK--------------------EVKDLKGP 182 (195)
T ss_pred hCCCEEEEE-ECCCcccCCCCCCHHHHHHhcCCCccceECCCCHHHHHHHHH--------------------HHHhCCCC
Confidence 467999988 89999999988743333333334333 256666554432221 23346789
Q ss_pred ccccccccccccc
Q psy16520 203 AWVFQPLELTETT 215 (353)
Q Consensus 203 ~~~~~~~~~~~~r 215 (353)
.+ |++.|..
T Consensus 183 ~~----I~~~T~k 191 (195)
T cd02007 183 VL----LHVVTKK 191 (195)
T ss_pred EE----EEEEEec
Confidence 99 8888764
No 53
>PLN02790 transketolase
Probab=82.20 E-value=0.26 Score=52.50 Aligned_cols=68 Identities=9% Similarity=0.003 Sum_probs=44.2
Q ss_pred CCCc-cccccCCCCccccccccccchhh---hhhhhccee--eecC--CcEEEEEeecchhhhhhccccccccccccccc
Q psy16520 124 KQMP-VHYGSRQHHFVTISSPLATQLPQ---AVGSAYAYK--LKKN--EKVVIVYFGEGAAIVTMATPFQPQRRNSMEEM 195 (353)
Q Consensus 124 ~~~p-~h~~~~e~n~~~~ss~vg~q~~~---a~G~A~g~~--~~~g--~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~ 195 (353)
+++| +++++ ++|.++++++++.+... ....+||.. .+++ +|+..+...-. .
T Consensus 164 ~~L~nli~i~-d~N~~~i~~~~~~~~~~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~--------------------~ 222 (654)
T PLN02790 164 WGLGKLIVLY-DDNHISIDGDTEIAFTEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIK--------------------E 222 (654)
T ss_pred hCCCCEEEEE-ecCCccccCCcccccchhHHHHHHHcCCeEEEECCCCCCHHHHHHHHH--------------------H
Confidence 7888 56677 89999999999976532 356777765 3444 35533322211 2
Q ss_pred Ccc-cCCCcccccccccccccc
Q psy16520 196 GSR-PEGLAWVFQPLELTETTI 216 (353)
Q Consensus 196 ~~a-~rgp~~~~~~~~~~~~r~ 216 (353)
.+. .++|.+ |+++|++-
T Consensus 223 a~~~~~~P~l----I~~~T~kG 240 (654)
T PLN02790 223 AKAVTDKPTL----IKVTTTIG 240 (654)
T ss_pred HHhcCCCeEE----EEEEEeec
Confidence 222 578999 99999974
No 54
>PRK12754 transketolase; Reviewed
Probab=81.32 E-value=0.73 Score=49.20 Aligned_cols=71 Identities=7% Similarity=-0.100 Sum_probs=48.5
Q ss_pred CCCcc-ccccCCCCccccccccccchhh---hhhhhccee--e-ecCCcEEEEEeecchhhhhhcccccccccccccccC
Q psy16520 124 KQMPV-HYGSRQHHFVTISSPLATQLPQ---AVGSAYAYK--L-KKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMG 196 (353)
Q Consensus 124 ~~~p~-h~~~~e~n~~~~ss~vg~q~~~---a~G~A~g~~--~-~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~ 196 (353)
++||. ++++ ++|.+.+++++..+..- .+..|||.. . +||+|+..+...-..+ .
T Consensus 173 ~kL~nLi~iv-D~N~~~idg~~~~~~~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a------------------~- 232 (663)
T PRK12754 173 LKLGKLIAFY-DDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEA------------------R- 232 (663)
T ss_pred hCCCCEEEEE-EcCCCccCcchhhccCccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHH------------------H-
Confidence 78995 5777 89999999999877632 367777765 4 6888876654222111 1
Q ss_pred cccCCCcccccccccccccccC
Q psy16520 197 SRPEGLAWVFQPLELTETTIGH 218 (353)
Q Consensus 197 ~a~rgp~~~~~~~~~~~~r~~~ 218 (353)
..+.+|.+ |+++|++-.+
T Consensus 233 ~~~~~Pt~----I~~~T~~g~G 250 (663)
T PRK12754 233 AVTDKPSL----LMCKTIIGFG 250 (663)
T ss_pred hcCCCCEE----EEEEeeeccC
Confidence 12467999 9999997533
No 55
>PRK12753 transketolase; Reviewed
Probab=76.00 E-value=1.1 Score=47.97 Aligned_cols=72 Identities=8% Similarity=-0.123 Sum_probs=47.8
Q ss_pred CCCc-cccccCCCCccccccccccchhh---hhhhhccee--e-ecCCcEEEEEeecchhhhhhcccccccccccccccC
Q psy16520 124 KQMP-VHYGSRQHHFVTISSPLATQLPQ---AVGSAYAYK--L-KKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMG 196 (353)
Q Consensus 124 ~~~p-~h~~~~e~n~~~~ss~vg~q~~~---a~G~A~g~~--~-~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~ 196 (353)
+++| +++++ ++|.++++++++.+... ....+||.. . +||+|+..++..-..+.
T Consensus 173 ~kL~nLi~iv-d~N~~~i~~~~~~~~~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~------------------- 232 (663)
T PRK12753 173 LGLGKLIGFY-DHNGISIDGETEGWFTDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQ------------------- 232 (663)
T ss_pred HCCCCEEEEE-ECCCCcCCCChhhhcChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHH-------------------
Confidence 6887 45566 89999999999876632 356677765 2 68888765554432221
Q ss_pred cccCCCcccccccccccccccCC
Q psy16520 197 SRPEGLAWVFQPLELTETTIGHH 219 (353)
Q Consensus 197 ~a~rgp~~~~~~~~~~~~r~~~h 219 (353)
..+.+|.+ |+++|++-.+.
T Consensus 233 ~~~~~P~~----I~~~T~kG~G~ 251 (663)
T PRK12753 233 SVKDKPSL----IICRTIIGFGS 251 (663)
T ss_pred HCCCCeEE----EEEEEeecCCC
Confidence 12467999 99999875333
No 56
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=74.66 E-value=0.52 Score=42.26 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=24.6
Q ss_pred cccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 142 SPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 142 s~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
+.+|-.+|.|.|++++. .+..++|+.|||+..
T Consensus 53 g~mG~~lpaaiGa~la~----p~r~vv~i~GDG~f~ 84 (196)
T cd02013 53 GNCGYALPAIIGAKAAA----PDRPVVAIAGDGAWG 84 (196)
T ss_pred cccccHHHHHHHHHHhC----CCCcEEEEEcchHHh
Confidence 45577777788887764 356789999999998
No 57
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=70.75 E-value=2 Score=45.95 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=35.7
Q ss_pred cccccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 138 VTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 138 ~~~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
.-.++++|.+++.|+|.|+|.++.+.+..++|.+|||+..
T Consensus 140 ~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~ 179 (677)
T PLN02582 140 CFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMT 179 (677)
T ss_pred eeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccc
Confidence 3456788899999999999998888889999999999999
No 58
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=64.03 E-value=3.6 Score=35.12 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=29.0
Q ss_pred ccccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 139 TISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 139 ~~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
...+++|...|.|.|++++.+ +..++++.|||+..
T Consensus 43 ~~~g~~G~~~~~a~Gaa~a~~----~~~vv~~~GDG~~~ 77 (168)
T cd00568 43 TGFGAMGYGLPAAIGAALAAP----DRPVVCIAGDGGFM 77 (168)
T ss_pred CCchhhhhhHHHHHHHHHhCC----CCcEEEEEcCcHHh
Confidence 345788999999999998865 56889999999986
No 59
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=61.59 E-value=5 Score=35.40 Aligned_cols=32 Identities=25% Similarity=0.328 Sum_probs=27.7
Q ss_pred ccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 141 SSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 141 ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
.+++|...|.|+|.+++.+ ..++|+.|||+..
T Consensus 41 ~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~ 72 (179)
T cd03372 41 LGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLL 72 (179)
T ss_pred ccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHH
Confidence 6778888899999999865 6789999999995
No 60
>KOG0523|consensus
Probab=60.16 E-value=4.9 Score=41.92 Aligned_cols=37 Identities=32% Similarity=0.475 Sum_probs=32.2
Q ss_pred ccccccchhhhhhhhcceeeecC-CcEEEEEeecchhh
Q psy16520 141 SSPLATQLPQAVGSAYAYKLKKN-EKVVIVYFGEGAAI 177 (353)
Q Consensus 141 ss~vg~q~~~a~G~A~g~~~~~g-~~v~~v~~Gdg~~~ 177 (353)
++|+|..++.|+|.|++.++.+. ++=++|.+|||...
T Consensus 117 TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~ 154 (632)
T KOG0523|consen 117 TGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLT 154 (632)
T ss_pred cCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhc
Confidence 46788888889999999997776 88899999999998
No 61
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=57.01 E-value=2 Score=45.09 Aligned_cols=23 Identities=9% Similarity=-0.031 Sum_probs=18.6
Q ss_pred CCCccccccCCCCccccccccccc
Q psy16520 124 KQMPVHYGSRQHHFVTISSPLATQ 147 (353)
Q Consensus 124 ~~~p~h~~~~e~n~~~~ss~vg~q 147 (353)
.+.|+++++ +||.|+++++++.+
T Consensus 167 ~~~nli~Iv-dnN~~~i~~~~~~~ 189 (580)
T PRK05444 167 LKSDLIVIL-NDNEMSISPNVGAL 189 (580)
T ss_pred hCCCEEEEE-ECCCCcCCCcchhh
Confidence 458888888 89999999988755
No 62
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=55.23 E-value=8.7 Score=33.39 Aligned_cols=32 Identities=34% Similarity=0.566 Sum_probs=27.3
Q ss_pred cccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 142 SPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 142 s~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
+.+|..+|.+.|++++.+ +..++|+.|||+..
T Consensus 49 g~mG~~lp~aiGaala~~----~~~vv~i~GDG~f~ 80 (178)
T cd02002 49 GGLGWGLPAAVGAALANP----DRKVVAIIGDGSFM 80 (178)
T ss_pred ccccchHHHHHHHHhcCC----CCeEEEEEcCchhh
Confidence 788999999999998864 56889999999986
No 63
>KOG0451|consensus
Probab=52.95 E-value=2.8 Score=43.30 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=66.2
Q ss_pred CCCccccccCCCCcccccccc--ccchhh--hhhhhcc--eeeecCCcEEEEEeecchhhhhhcccccccccccccccCc
Q psy16520 124 KQMPVHYGSRQHHFVTISSPL--ATQLPQ--AVGSAYA--YKLKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGS 197 (353)
Q Consensus 124 ~~~p~h~~~~e~n~~~~ss~v--g~q~~~--a~G~A~g--~~~~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~~ 197 (353)
-++++|++. ||+.+..+|- |+.... ..|.++. +-.++|+++-.|.....-+- . .-+
T Consensus 351 vGGsvHLiv--NNQvgfTtp~~rGRSs~ycsDiaK~~~~pviHVNGD~PEevvraTrLAf-------~---------Yqr 412 (913)
T KOG0451|consen 351 VGGSVHLIV--NNQVGFTTPGDRGRSSAYCSDIAKSIQAPVIHVNGDDPEEVVRATRLAF-------R---------YQR 412 (913)
T ss_pred ecceEEEEe--cccccccCcccccccchhhhHHHHHhCCCEEEeCCCCHHHHHHHHHHHH-------H---------HHH
Confidence 568999998 6877777764 444333 2444443 33667766544332221111 1 112
Q ss_pred ccCCCcccccccccccccccCCCcc-ChhHhhcCH---HHHHHHHHcCCCeehhHHHHhhccCCCHHHHHHhh
Q psy16520 198 RPEGLAWVFQPLELTETTIGHHSTS-DDSTAYRSK---SEVQEYEINNNPILRFKTLLFKKKLWSEEQDEQIG 266 (353)
Q Consensus 198 a~rgp~~~~~~~~~~~~r~~~hs~~-D~~~~yr~~---~ea~~~~r~~~Pv~~~~~~l~~~~~~~e~~~~R~~ 266 (353)
.=|.-.| |.+.+||-=+|-.- || .|.+. +++. +|+--|=+ +-++|.+.|+++|+....+.
T Consensus 413 ~FRKDvf----IdL~CfRrwgHnelddp--~ftspvmyk~v~--aReSvPdl-ya~~L~~eg~~tee~vkE~~ 476 (913)
T KOG0451|consen 413 EFRKDVF----IDLNCFRRWGHNELDDP--TFTSPVMYKEVE--ARESVPDL-YAQQLAKEGVLTEEKVKEMR 476 (913)
T ss_pred Hhhhhhe----eehHHHHHhccccccCc--cccChhHHHHHH--hhhcccHH-HHHHHHhcccccHHHHHHHH
Confidence 2234567 99999987666554 33 23222 2222 23334433 67899999999999887664
No 64
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=51.42 E-value=30 Score=21.43 Aligned_cols=27 Identities=30% Similarity=0.224 Sum_probs=20.5
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy16520 292 PILRFKTLLFKKKLWSEKQDEQLKKESK 319 (353)
Q Consensus 292 P~~~~~~~l~~~g~~t~~e~~~~~~e~~ 319 (353)
++..++..+ +.|.+|++|.++.++++.
T Consensus 4 ~L~~L~~l~-~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 4 RLEKLKELY-DKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHH-HcCCCCHHHHHHHHHHHh
Confidence 555665555 689999999999888763
No 65
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=51.15 E-value=11 Score=36.25 Aligned_cols=43 Identities=19% Similarity=0.139 Sum_probs=33.4
Q ss_pred CCccccccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 135 HHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 135 ~n~~~~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
.+...+.+..|.+.+.|.|.+.+++..+.+..++++.|||.+.
T Consensus 62 ~~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~ 104 (299)
T PRK11865 62 WNVPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTA 104 (299)
T ss_pred cccccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHh
Confidence 3455567778888888999888876544456899999999887
No 66
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=48.88 E-value=12 Score=32.34 Aligned_cols=33 Identities=30% Similarity=0.305 Sum_probs=25.7
Q ss_pred ccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 141 SSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 141 ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
.+.+|..+|.|.|.+++.+ +..++|+.|||+..
T Consensus 47 ~g~mG~~lp~AiGa~la~~----~~~vv~i~GDG~f~ 79 (172)
T cd02004 47 FGTLGVGLGYAIAAALARP----DKRVVLVEGDGAFG 79 (172)
T ss_pred CCcccchHHHHHHHHHhCC----CCeEEEEEcchhhc
Confidence 3567888888888887753 56889999999886
No 67
>KOG0450|consensus
Probab=48.70 E-value=5 Score=42.63 Aligned_cols=118 Identities=11% Similarity=0.065 Sum_probs=71.7
Q ss_pred CCCccccccCCCCccccccc----cccchhhhhhhhccee--eecCCcEEEEEeecchhhhhhcccccccccccccccCc
Q psy16520 124 KQMPVHYGSRQHHFVTISSP----LATQLPQAVGSAYAYK--LKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGS 197 (353)
Q Consensus 124 ~~~p~h~~~~e~n~~~~ss~----vg~q~~~a~G~A~g~~--~~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~~ 197 (353)
-++.+|.++ ||+.+..+- -.++++..++.+...+ .++++|+-+|.+.=.-++ +...
T Consensus 433 T~GTvHvVv--NNQIgFTTDPR~aRSspYcTDvar~v~aPIFHVNaDD~EAV~~vc~vAA----------------eWR~ 494 (1017)
T KOG0450|consen 433 TGGTVHVVV--NNQIGFTTDPRFARSSPYCTDVARVVNAPIFHVNADDPEAVMHVCKVAA----------------EWRK 494 (1017)
T ss_pred cCCeEEEEE--ccccccccCcccccCCCCchhHHHHhCCCeEeecCCChHHHHHHHHHHH----------------HHHH
Confidence 457788888 688777663 2233444566666655 688888766655422221 1111
Q ss_pred ccCCCcccccccccccccccCCCccChhHhhcCHHHHHHHHHcCCCee-hhHHHHhhccCCCHHHHHHh
Q psy16520 198 RPEGLAWVFQPLELTETTIGHHSTSDDSTAYRSKSEVQEYEINNNPIL-RFKTLLFKKKLWSEEQDEQI 265 (353)
Q Consensus 198 a~rgp~~~~~~~~~~~~r~~~hs~~D~~~~yr~~~ea~~~~r~~~Pv~-~~~~~l~~~~~~~e~~~~R~ 265 (353)
.=+.-.. +.+.+||..+|-.-|-. .+.-. ..-...|+..|++ ++.+.|+.+|..++.++.+.
T Consensus 495 tFh~DvV----VDlVcyRR~GHNE~DeP-~FTQP-lMYk~I~k~~~~l~~Y~ekLl~egtvs~~evd~~ 557 (1017)
T KOG0450|consen 495 TFHKDVV----VDLVCYRRHGHNEIDEP-MFTQP-LMYKQIRKHKPVLQKYAEKLLSEGTVSQQEVDEE 557 (1017)
T ss_pred HhccCeE----EEEEEEeecCCCcccCc-cccch-HHHHHHHcCCcHHHHHHHHHHhcCcccHHHHHHH
Confidence 1122345 77889999999887532 22211 2223344566655 58999999999999988765
No 68
>PRK11032 hypothetical protein; Provisional
Probab=46.74 E-value=79 Score=27.62 Aligned_cols=42 Identities=5% Similarity=-0.008 Sum_probs=36.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy16520 293 ILRFKTLLFKKKLWSEKQDEQLKKESKQLVLNSIRISEKKLK 334 (353)
Q Consensus 293 ~~~~~~~l~~~g~~t~~e~~~~~~e~~~~v~~a~~~a~~~~~ 334 (353)
+...++++.+.+-+|.+|++.+.+-++..+.+..+.......
T Consensus 30 ve~a~~~~~~~~elT~dEl~lv~~ylkRDL~ef~~~~~~~~~ 71 (160)
T PRK11032 30 VESARKRVDAAGELTRDEVDLITRAVRRDLEEFARSYEESKE 71 (160)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 667888899999999999999999999999998887665544
No 69
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=46.27 E-value=21 Score=37.81 Aligned_cols=41 Identities=29% Similarity=0.401 Sum_probs=30.7
Q ss_pred ccccccccccchhhhhhhhcceee------ecCC----cEEEEEeecchhh
Q psy16520 137 FVTISSPLATQLPQAVGSAYAYKL------KKNE----KVVIVYFGEGAAI 177 (353)
Q Consensus 137 ~~~~ss~vg~q~~~a~G~A~g~~~------~~g~----~v~~v~~Gdg~~~ 177 (353)
.=..++|+|..++.|+|.|++-+. .+|. --+.|+.|||...
T Consensus 111 Ve~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclm 161 (663)
T COG0021 111 VEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLM 161 (663)
T ss_pred eEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHh
Confidence 344567999999999999988762 2333 3678999999877
No 70
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=44.25 E-value=3.8 Score=43.01 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=22.3
Q ss_pred cccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 142 SPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 142 s~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
+..|-.+|.++|.+++. .+..++++.|||+..
T Consensus 435 g~mG~glp~aiGa~la~----p~r~vv~i~GDG~f~ 466 (588)
T PRK07525 435 GNCGYAFPAIIGAKIAC----PDRPVVGFAGDGAWG 466 (588)
T ss_pred cccccHHHHHHHHHHhC----CCCcEEEEEcCchHh
Confidence 44555556666666653 346789999999888
No 71
>PRK07524 hypothetical protein; Provisional
Probab=43.88 E-value=10 Score=39.31 Aligned_cols=32 Identities=31% Similarity=0.531 Sum_probs=24.1
Q ss_pred cccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 142 SPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 142 s~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
+..|-.+|.++|++++. .+..++++.|||+..
T Consensus 407 g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~ 438 (535)
T PRK07524 407 GTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQ 438 (535)
T ss_pred ccccchHHHHHHHHHhC----CCCcEEEEEcchHHh
Confidence 45566666677777763 457899999999988
No 72
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=40.85 E-value=1.2e+02 Score=30.29 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=32.1
Q ss_pred ccccccccccchhhhhhhhcceee-------ecCCcEEEEEeecchhh
Q psy16520 137 FVTISSPLATQLPQAVGSAYAYKL-------KKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 137 ~~~~ss~vg~q~~~a~G~A~g~~~-------~~g~~v~~v~~Gdg~~~ 177 (353)
+-..++++|..++.|+|.|++.+. .+.+.=++|..|||+..
T Consensus 113 ve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~ 160 (386)
T cd02017 113 WEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMD 160 (386)
T ss_pred eeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccc
Confidence 344577888888889999999874 33456688999999998
No 73
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=39.15 E-value=1.3 Score=40.82 Aligned_cols=44 Identities=16% Similarity=0.199 Sum_probs=31.0
Q ss_pred CCCccccccccccc-hh---h-hhhhhccee--eecCCcEEEEEeecchhh
Q psy16520 134 QHHFVTISSPLATQ-LP---Q-AVGSAYAYK--LKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 134 e~n~~~~ss~vg~q-~~---~-a~G~A~g~~--~~~g~~v~~v~~Gdg~~~ 177 (353)
.+|.|.+++++... .+ + ....+||.. .+||+|+..++....++.
T Consensus 120 d~Ng~~i~~pt~~~~~~~e~l~~~~~~yG~~~~~VDG~D~~av~~~~a~a~ 170 (227)
T cd02011 120 HLNGYKISNPTILARISHEELEALFRGYGYEPYFVEGDDPETMHQAMAATL 170 (227)
T ss_pred EcCCCcccCCccccccCchhHHHHHHhCCCceEEECCCCHHHHHHHHHHHH
Confidence 48999999999854 32 2 466777765 679988877666655444
No 74
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=35.54 E-value=18 Score=38.67 Aligned_cols=40 Identities=25% Similarity=0.283 Sum_probs=34.3
Q ss_pred cccccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 138 VTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 138 ~~~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
...+++.|..++.|+|.|+|.+..+.+.-++|..|||+..
T Consensus 173 ~~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~ 212 (641)
T PLN02234 173 SFGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMT 212 (641)
T ss_pred EECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhh
Confidence 3446677888888999999998888888889999999999
No 75
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=35.41 E-value=1.2e+02 Score=21.78 Aligned_cols=30 Identities=13% Similarity=0.087 Sum_probs=25.0
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy16520 296 FKTLLFKKKLWSEKQDEQLKKESKQLVLNS 325 (353)
Q Consensus 296 ~~~~l~~~g~~t~~e~~~~~~e~~~~v~~a 325 (353)
+-+.+.+.|.+|.++-+.|++.+++..+..
T Consensus 23 ~idk~Ve~G~iTqeqAd~ik~~id~~~~~~ 52 (59)
T PF10925_consen 23 IIDKYVEAGVITQEQADAIKKHIDQRQEYM 52 (59)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 455667899999999999999998887655
No 76
>PRK05899 transketolase; Reviewed
Probab=34.79 E-value=6.1 Score=41.94 Aligned_cols=74 Identities=7% Similarity=-0.022 Sum_probs=45.3
Q ss_pred CCCc-cccccCCCCccccccccccchhh---hhhhhccee--eecCCcEEEEEeecchhhhhhcccccccccccccccCc
Q psy16520 124 KQMP-VHYGSRQHHFVTISSPLATQLPQ---AVGSAYAYK--LKKNEKVVIVYFGEGAAIVTMATPFQPQRRNSMEEMGS 197 (353)
Q Consensus 124 ~~~p-~h~~~~e~n~~~~ss~vg~q~~~---a~G~A~g~~--~~~g~~v~~v~~Gdg~~~a~is~~~~~q~~~~~~~~~~ 197 (353)
.++| +++++ +||.|+++.++....+. ....++|.+ .++|+++..+...-. ..+
T Consensus 177 ~~L~~li~v~-dnN~~~~~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~--------------------~a~ 235 (624)
T PRK05899 177 LKLGNLIVIY-DDNRISIDGPTEGWFTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIE--------------------EAK 235 (624)
T ss_pred hCCCCEEEEE-ECCCCcccccccccccccHHHHhccCCCeEEEECCCCHHHHHHHHH--------------------HHH
Confidence 5787 45555 89999999887754321 355666654 456555433322211 122
Q ss_pred ccCCCcccccccccccccccCCCcc
Q psy16520 198 RPEGLAWVFQPLELTETTIGHHSTS 222 (353)
Q Consensus 198 a~rgp~~~~~~~~~~~~r~~~hs~~ 222 (353)
..++|.+ |++.|.+-.+++..
T Consensus 236 ~~~~P~v----I~v~t~kg~g~~~~ 256 (624)
T PRK05899 236 ASTKPTL----IIAKTIIGKGAPNK 256 (624)
T ss_pred hcCCCEE----EEEEeEeccCCccc
Confidence 3357999 99999998777643
No 77
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=33.64 E-value=23 Score=30.88 Aligned_cols=32 Identities=28% Similarity=0.548 Sum_probs=24.1
Q ss_pred cccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 142 SPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 142 s~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
+.+|.+.|.+.|++++. .+..++++.|||+..
T Consensus 51 g~mG~~~~~aiGa~~a~----~~~~vv~i~GDG~f~ 82 (178)
T cd02014 51 ATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFA 82 (178)
T ss_pred chhhhHHHHHHHHHHhC----CCCcEEEEEcchHHH
Confidence 45666777777877763 356889999999997
No 78
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=33.27 E-value=4.2 Score=37.93 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=22.1
Q ss_pred CCCc-cccccCCCCccccccccccchhh----hhhhhccee
Q psy16520 124 KQMP-VHYGSRQHHFVTISSPLATQLPQ----AVGSAYAYK 159 (353)
Q Consensus 124 ~~~p-~h~~~~e~n~~~~ss~vg~q~~~----a~G~A~g~~ 159 (353)
.++| ++++. +||.|++++++....+. ....++|.+
T Consensus 154 ~~l~~li~vv-dnN~~~~~~~~~~~~~~~~~~~~~~a~G~~ 193 (255)
T cd02012 154 YKLDNLIAIV-DSNRIQIDGPTDDILFTEDLAKKFEAFGWN 193 (255)
T ss_pred cCCCcEEEEE-ECCCccccCcHhhccCchhHHHHHHHcCCe
Confidence 4676 45555 89999988877554432 355666654
No 79
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=32.94 E-value=27 Score=29.97 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=25.4
Q ss_pred ccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 141 SSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 141 ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
.+..|-..|.|.|.+++.+ ..++|+.|||+..
T Consensus 41 ~gsmG~~lp~AiGa~~a~~-----~~Vv~i~GDG~f~ 72 (157)
T cd02001 41 LGSMGLAGSIGLGLALGLS-----RKVIVVDGDGSLL 72 (157)
T ss_pred ecchhhHHHHHHHHHhcCC-----CcEEEEECchHHH
Confidence 5667777888888888752 5778999999996
No 80
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=32.76 E-value=8.2 Score=40.99 Aligned_cols=25 Identities=8% Similarity=-0.063 Sum_probs=21.7
Q ss_pred CCCccccccCCCCccccccccccchh
Q psy16520 124 KQMPVHYGSRQHHFVTISSPLATQLP 149 (353)
Q Consensus 124 ~~~p~h~~~~e~n~~~~ss~vg~q~~ 149 (353)
+++|+++++ ++|.++++++++.+.+
T Consensus 160 ~~l~~i~ii-~~N~~~i~~~~~~~~~ 184 (617)
T TIGR00204 160 LKTDMIVIL-NDNEMSISENVGALSN 184 (617)
T ss_pred cCCCEEEEE-ECCCcccCCCchHHHH
Confidence 789998888 8999999999987753
No 81
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=31.35 E-value=34 Score=28.89 Aligned_cols=34 Identities=26% Similarity=0.498 Sum_probs=25.8
Q ss_pred cccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 140 ISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 140 ~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
..+.+|...|.|.|++.+ ..+..++++.|||+..
T Consensus 26 ~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~ 59 (153)
T PF02775_consen 26 GFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFL 59 (153)
T ss_dssp TTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHH
T ss_pred CccccCCHHHhhhHHHhh----cCcceeEEecCCccee
Confidence 355677777778888776 3367899999999997
No 82
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=31.21 E-value=78 Score=25.84 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=24.7
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy16520 302 KKKLWSEKQDEQLKKESKQLVLNSIRISE 330 (353)
Q Consensus 302 ~~g~~t~~e~~~~~~e~~~~v~~a~~~a~ 330 (353)
++|.++++|.++.+.|++..+.+..+...
T Consensus 53 ~~G~l~~~e~~~~~~El~rrLL~d~~~~~ 81 (117)
T TIGR03142 53 AEGLLDEAEAEAARAELQRRLLADIPAAE 81 (117)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHCccccc
Confidence 57899999999999999999888766543
No 83
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=30.62 E-value=33 Score=30.09 Aligned_cols=32 Identities=31% Similarity=0.462 Sum_probs=24.2
Q ss_pred cccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 142 SPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 142 s~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
+.+|-..|.|.|++++. .+..++++.|||+..
T Consensus 50 g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~ 81 (186)
T cd02015 50 GTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQ 81 (186)
T ss_pred cchhchHHHHHHHHHhC----CCCeEEEEEcccHHh
Confidence 45677777778877764 346788999999987
No 84
>PF02979 NHase_alpha: Nitrile hydratase, alpha chain; InterPro: IPR004232 Nitrile hydratases (4.2.1.84 from EC) are bacterial enzymes that catalyse the hydration of nitrile compounds to the corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and are normally active as a tetramer, alpha(2)beta(2). Nitrile hydratases contain either a non-haem iron or a non-corrinoid cobalt centre, both types sharing a highly conserved peptide sequence in the alpha subunit (CXLCSC) that provides all the residues involved in coordinating the metal ion. Each type of nitrile hydratase specifically incorporated its metal with the help of activator proteins encoded by flanking regions of the nitrile hydratase genes that are necessary for metal insertion. The Fe-containing enzyme is photo-regulated: in the dark the enzyme is inactivated due to the association of nitric oxide (NO) to the iron, while in the light the enzyme is active by photo-dissociation of NO. The NO is held in place by a claw setting formed through specific oxygen atoms in two modified cysteines and a serine residue in the active site [, ]. The cobalt-containing enzyme is unaffected by NO, but was shown to undergo a similar effect with carbon monoxide [, ]. Fe- and cobalt-containing enzymes also display different inhibition patterns with nitrophenols. Thiocyanate hydrolase (SCNase) is a cobalt-containing metalloenzyme with a cysteine-sulphinic acid ligand that hydrolyses thiocyanate to carbonyl sulphide and ammonia []. The two enzymes, nitrile hydratase and SCNase, are homologous over regions corresponding to almost the entire coding regions of the genes: the beta and alpha subunits of thiocyanate hydrolase were homologous to the amino- and carboxyl-terminal halves of the beta subunit of nitrile hydratase, and the gamma subunit of thiocyanate hydrolase was homologous to the alpha subunit of nitrile hydratase []. This entry represents the structural domain of the alpha subunit of both iron- and cobalt-containing nitrile hydratases; the alpha subunit is a duplication of two structural repeats, each consisting of 4 layers, alpha/beta/beta/alpha []. This structure is also found in the related protein, the gamma subunit of thiocyanate hydrolase (SCNase).; GO: 0003824 catalytic activity, 0046914 transition metal ion binding, 0006807 nitrogen compound metabolic process; PDB: 2DPP_A 3HHT_A 1V29_A 2ZZD_I 2DXC_F 2DXB_F 2DD5_C 2DD4_C 2ZPH_A 2CYZ_A ....
Probab=30.52 E-value=1e+02 Score=27.52 Aligned_cols=40 Identities=10% Similarity=0.123 Sum_probs=28.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHH-----HHHHHHHHHhC
Q psy16520 293 ILRFKTLLFKKKLWSEKQDEQLKKESKQL-----VLNSIRISEKK 332 (353)
Q Consensus 293 ~~~~~~~l~~~g~~t~~e~~~~~~e~~~~-----v~~a~~~a~~~ 332 (353)
+..++..|+++|+++.++++.+.+..+.. -.+.+++|...
T Consensus 9 ~~al~~ll~ekg~~~~~~~~~~~~~~~~~~~P~~GarvVArAW~D 53 (188)
T PF02979_consen 9 VRALESLLIEKGLITPAEVDRIIETYESRVGPRNGARVVARAWTD 53 (188)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHHHHHHTSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhccCccccceeehhhhCC
Confidence 45688999999999999999988888766 34445555544
No 85
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=29.48 E-value=56 Score=28.49 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=23.9
Q ss_pred ccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 141 SSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 141 ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
.+..|...|.|.|.+++.+ +.-++++.|||+..
T Consensus 50 ~g~mG~gl~~AiGa~la~p----~~~Vv~i~GDG~f~ 82 (178)
T cd02008 50 CTCMGASIGVAIGMAKASE----DKKVVAVIGDSTFF 82 (178)
T ss_pred cccCccHHHHHhhHHhhCC----CCCEEEEecChHHh
Confidence 4566666677777777754 45678899999985
No 86
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=27.98 E-value=39 Score=30.00 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=24.9
Q ss_pred cccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 142 SPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 142 s~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
+..|-.+|.|.|++++.+ +..++|+.|||+..
T Consensus 48 g~mG~~lpaAiGaala~p----~~~Vv~i~GDG~f~ 79 (188)
T cd03371 48 GSMGHASQIALGIALARP----DRKVVCIDGDGAAL 79 (188)
T ss_pred CccccHHHHHHHHHHhCC----CCcEEEEeCCcHHH
Confidence 667777777888887753 45678999999985
No 87
>TIGR01323 nitrile_alph nitrile hydratase, alpha subunit. This model describes both iron- and cobalt-containing nitrile hydratase alpha chains. It excludes the thiocyanate hydrolase gamma subunit of Thiobacillus thioparus, a sequence that appears to have evolved from within the family of nitrile hydratase alpha subunits but which differs by several indels and a more rapid accumulation of point mutations.
Probab=27.54 E-value=1.1e+02 Score=27.12 Aligned_cols=29 Identities=21% Similarity=0.122 Sum_probs=25.3
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q psy16520 293 ILRFKTLLFKKKLWSEKQDEQLKKESKQL 321 (353)
Q Consensus 293 ~~~~~~~l~~~g~~t~~e~~~~~~e~~~~ 321 (353)
+..++..|+++|+++.++++.+.+.++.+
T Consensus 3 ~~Ale~ll~eKGli~~~~id~~i~~~~~~ 31 (185)
T TIGR01323 3 AKALEQVLKSKGLIPEGAVDQLTSLYENE 31 (185)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 45688999999999999999998888876
No 88
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=27.06 E-value=34 Score=30.09 Aligned_cols=32 Identities=28% Similarity=0.532 Sum_probs=24.3
Q ss_pred cccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 142 SPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 142 s~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
+.+|-..|.+.|++++.+ +..++++.|||+..
T Consensus 50 g~mG~~l~~aiGaala~~----~~~vv~i~GDG~f~ 81 (183)
T cd02005 50 GSIGYSVPAALGAALAAP----DRRVILLVGDGSFQ 81 (183)
T ss_pred hhHhhhHHHHHHHHHhCC----CCeEEEEECCchhh
Confidence 556666777788777643 46889999999987
No 89
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=27.00 E-value=33 Score=36.60 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=28.3
Q ss_pred ccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 145 ATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 145 g~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
+.+++.++|.|+|.+..+.+..++|..|||+..
T Consensus 122 ~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~ 154 (641)
T PRK12571 122 STSISAALGFAKARALGQPDGDVVAVIGDGSLT 154 (641)
T ss_pred cChHHHHHHHHHHHHHhCCCCeEEEEEeCchhh
Confidence 455678899999998777788999999999996
No 90
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=26.79 E-value=70 Score=22.60 Aligned_cols=20 Identities=15% Similarity=0.420 Sum_probs=15.5
Q ss_pred HHHHHHhhcCCCCHHHHHHH
Q psy16520 295 RFKTLLFKKKLWSEKQDEQL 314 (353)
Q Consensus 295 ~~~~~l~~~g~~t~~e~~~~ 314 (353)
-.++...+.|++|++|++++
T Consensus 27 svre~v~~~g~lt~ee~d~l 46 (55)
T PF10415_consen 27 SVREVVLEEGLLTEEELDEL 46 (55)
T ss_dssp -HHHHHHHTTSS-HHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHH
Confidence 36778889999999999876
No 91
>PF10642 Tom5: Mitochondrial import receptor subunit or translocase; InterPro: IPR019603 This entry represents a short family of yeast proteins. Tom5 is one of three very small translocases of the mitochondrial outer membrane. Tom5 links mitochondrial preprotein receptors to the general import pore []. Although Tom5 has allegedly been identified in vertebrates this could not be confirmed.
Probab=26.51 E-value=1.5e+02 Score=20.61 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy16520 304 KLWSEKQDEQLKKESKQLVLNSIRIS 329 (353)
Q Consensus 304 g~~t~~e~~~~~~e~~~~v~~a~~~a 329 (353)
+..+++|++..+++....|..++..|
T Consensus 7 ~qpS~eE~k~~e~~A~~Tvk~a~~~a 32 (49)
T PF10642_consen 7 PQPSEEEIKAAEAQANFTVKNAAAAA 32 (49)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999987655
No 92
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=26.22 E-value=44 Score=29.82 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=23.3
Q ss_pred cccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 142 SPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 142 s~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
+..|-.+|.+.|++++. .+..++|+.|||+..
T Consensus 57 GsmG~~lpaaiGa~la~----p~~~vv~i~GDG~f~ 88 (202)
T cd02006 57 GPLGWTVPAALGVAAAD----PDRQVVALSGDYDFQ 88 (202)
T ss_pred cchhhhhHHHHhHHhhC----CCCeEEEEEeChHhh
Confidence 44565666677777764 356789999999996
No 93
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=25.68 E-value=51 Score=29.07 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=24.2
Q ss_pred ccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 141 SSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 141 ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
.+..|-..|.|.|++++. +..++|+.|||+..
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~ 72 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLL 72 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHH
Confidence 455666667777877763 56788999999998
No 94
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=25.33 E-value=1.4e+02 Score=25.63 Aligned_cols=40 Identities=13% Similarity=0.022 Sum_probs=34.8
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16520 292 PILRFKTLLFKKKLWSEKQDEQLKKESKQLVLNSIRISEK 331 (353)
Q Consensus 292 P~~~~~~~l~~~g~~t~~e~~~~~~e~~~~v~~a~~~a~~ 331 (353)
-+...+.++.+.+-+|.+|++.+.+.++..+.+..+....
T Consensus 19 ~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~~ 58 (146)
T PF07295_consen 19 ALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYEE 58 (146)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666888888999999999999999999999998887666
No 95
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=25.05 E-value=52 Score=34.44 Aligned_cols=31 Identities=32% Similarity=0.497 Sum_probs=20.8
Q ss_pred ccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 143 PLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 143 ~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
.+|-.+|.+.|.+++ ..+..++|+.|||+..
T Consensus 431 smG~~lp~aiGa~la----~p~~~vv~i~GDG~f~ 461 (569)
T PRK08327 431 GLGWALGAALGAKLA----TPDRLVIATVGDGSFI 461 (569)
T ss_pred CCCcchHHHHHHhhc----CCCCeEEEEecCccee
Confidence 444444555555544 3467899999999986
No 96
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=23.75 E-value=1.4e+02 Score=22.89 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=28.5
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy16520 292 PILRFKTLLFKKKLWSEKQDEQLKKESKQLVLNSIRISE 330 (353)
Q Consensus 292 P~~~~~~~l~~~g~~t~~e~~~~~~e~~~~v~~a~~~a~ 330 (353)
-+.-+-+.|.+.+++|++|.+.++++-....+.|-...+
T Consensus 17 ~i~~llD~Ll~~~Vl~~~E~e~i~~~~~t~~dkar~Lid 55 (83)
T cd08325 17 VINGLLDDLLEKNVLNEEEMEKIKEENNTIMDKARVLVD 55 (83)
T ss_pred hHHHHHHHHHHcCCCCHHHHHHHHhccCCHHHHHHHHHH
Confidence 456677778888999999999999975445555544443
No 97
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=23.52 E-value=48 Score=31.77 Aligned_cols=34 Identities=29% Similarity=0.284 Sum_probs=25.2
Q ss_pred ccccccccchhhhhhhhcceeeecCCcEEEEEeecchh
Q psy16520 139 TISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAA 176 (353)
Q Consensus 139 ~~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~ 176 (353)
+..+..|..+|.|.|+.++.+ +..++++.|||+.
T Consensus 50 ~~~t~mG~alPaAiGaklA~P----d~~VVai~GDG~f 83 (287)
T TIGR02177 50 GFHGLHGRALPVATGIKLANP----HLKVIVVGGDGDL 83 (287)
T ss_pred CcccccccHHHHHHHHHHHCC----CCcEEEEeCchHH
Confidence 334555778888888877743 4678999999995
No 98
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=23.48 E-value=33 Score=33.08 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=24.9
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy16520 292 PILRFKTLLFKKKLWSEKQDEQLKKESKQLVLNSIRISE 330 (353)
Q Consensus 292 P~~~~~~~l~~~g~~t~~e~~~~~~e~~~~v~~a~~~a~ 330 (353)
|+..|-+.--.-..+.+++++++++++++..+.-.+.++
T Consensus 259 pv~~~l~~q~Rf~~L~~~~~~~~q~~vd~~~~~~~~~~~ 297 (300)
T PRK11864 259 PVEEYLKLQGRFKHLTEEEIKGLQEEIDEMWEEIKKLAK 297 (300)
T ss_pred CHHHHHhhccchhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554443332233356788999999988888777655443
No 99
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=22.62 E-value=65 Score=28.83 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=22.5
Q ss_pred cccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 142 SPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 142 s~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
+.+|-..|.|.|++++. .+..++++.|||+..
T Consensus 48 gsmG~~lpaAiGa~la~----p~~~vv~i~GDGsf~ 79 (205)
T cd02003 48 SCMGYEIAAGLGAKLAK----PDREVYVLVGDGSYL 79 (205)
T ss_pred chhhhHHHHHHHHHHhC----CCCeEEEEEccchhh
Confidence 44565666667776663 356788999999987
No 100
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=22.23 E-value=42 Score=31.78 Aligned_cols=36 Identities=31% Similarity=0.459 Sum_probs=25.6
Q ss_pred cccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 142 SPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 142 s~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
++-+...+.|.|.|.|....+.+.-+++.+|||+..
T Consensus 111 GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt 146 (270)
T PF13292_consen 111 GHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALT 146 (270)
T ss_dssp SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGG
T ss_pred CccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchh
Confidence 445555666788888887777888888999999998
No 101
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=22.21 E-value=63 Score=33.38 Aligned_cols=33 Identities=42% Similarity=0.554 Sum_probs=26.3
Q ss_pred ccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 141 SSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 141 ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
++.+|.+.|.++|++++.+ +..++|+.|||+..
T Consensus 406 ~g~mG~~lp~aiGa~la~p----~~~vv~i~GDG~f~ 438 (530)
T PRK07092 406 SGGLGYGLPAAVGVALAQP----GRRVIGLIGDGSAM 438 (530)
T ss_pred CCcccchHHHHHHHHHhCC----CCeEEEEEeCchHh
Confidence 4667888888888888753 46889999999997
No 102
>TIGR01323 nitrile_alph nitrile hydratase, alpha subunit. This model describes both iron- and cobalt-containing nitrile hydratase alpha chains. It excludes the thiocyanate hydrolase gamma subunit of Thiobacillus thioparus, a sequence that appears to have evolved from within the family of nitrile hydratase alpha subunits but which differs by several indels and a more rapid accumulation of point mutations.
Probab=22.09 E-value=88 Score=27.76 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=19.6
Q ss_pred hHHHHhhccCCCHHHHHHhhccCC
Q psy16520 247 FKTLLFKKKLWSEEQDEQIGHHST 270 (353)
Q Consensus 247 ~~~~l~~~~~~~e~~~~R~~~Hs~ 270 (353)
+++.|.+||+++...+.++-.+.+
T Consensus 6 le~ll~eKGli~~~~id~~i~~~~ 29 (185)
T TIGR01323 6 LEQVLKSKGLIPEGAVDQLTSLYE 29 (185)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHH
Confidence 678999999999999888765443
No 103
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=21.73 E-value=52 Score=31.45 Aligned_cols=36 Identities=25% Similarity=0.258 Sum_probs=26.6
Q ss_pred CccccccccccchhhhhhhhcceeeecCCcEEEEEeecch
Q psy16520 136 HFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGA 175 (353)
Q Consensus 136 n~~~~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~ 175 (353)
|.++..+..|..+|.|.|++++.+ +..++++.|||+
T Consensus 63 ~~~~~~g~mG~alpaAiGaklA~P----d~~VV~i~GDG~ 98 (286)
T PRK11867 63 NTYGFHTIHGRALAIATGLKLANP----DLTVIVVTGDGD 98 (286)
T ss_pred cccchhhhhhcHHHHHHHHHHhCC----CCcEEEEeCccH
Confidence 334454667888888888888743 467889999996
No 104
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=21.66 E-value=59 Score=32.23 Aligned_cols=49 Identities=20% Similarity=0.282 Sum_probs=25.9
Q ss_pred CCccccccCCCCccccccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 125 QMPVHYGSRQHHFVTISSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 125 ~~p~h~~~~e~n~~~~ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
++|.|..- + .+.|.+-|..+..+...|+|....+-+-|++|..|||++.
T Consensus 123 GipSH~~p-~---tPGsIhEGGELGYaLshA~GA~~DnPdliv~~vvGDGEaE 171 (379)
T PF09364_consen 123 GIPSHVSP-E---TPGSIHEGGELGYALSHAFGAVFDNPDLIVACVVGDGEAE 171 (379)
T ss_dssp SB-SSS-T-T---STT-S---SSTS-HHHHHHHHHTT-TT-EEEEEEETTGGG
T ss_pred CCccccCc-C---CCCccCcCcchhhHHHHHhhcccCCCCeEEEEEecCCccc
Confidence 36666544 2 2344444444444555555555566778999999999998
No 105
>PRK06163 hypothetical protein; Provisional
Probab=20.78 E-value=60 Score=29.28 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=25.3
Q ss_pred ccccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 141 SSPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 141 ss~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
.+.+|-.+|.|.|++++.+ +.-++|+.|||+..
T Consensus 56 ~GsMG~glpaAiGaalA~p----~r~Vv~i~GDG~f~ 88 (202)
T PRK06163 56 LGSMGLAFPIALGVALAQP----KRRVIALEGDGSLL 88 (202)
T ss_pred ecccccHHHHHHHHHHhCC----CCeEEEEEcchHHH
Confidence 4567777788888887743 45689999999986
No 106
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=20.69 E-value=75 Score=33.30 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=24.4
Q ss_pred cccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 142 SPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 142 s~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
+.+|-.+|.|+|++++. .+..++++.|||+..
T Consensus 422 gsmG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~ 453 (570)
T PRK06725 422 GTMGFGFPAAIGAQLAK----EEELVICIAGDASFQ 453 (570)
T ss_pred ccccchhhHHHhhHhhc----CCCeEEEEEecchhh
Confidence 55666777777777763 356789999999997
No 107
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=20.40 E-value=1.1e+02 Score=24.22 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=22.5
Q ss_pred hHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy16520 292 PILRFKTLLFKKKLWSEKQDEQLKKES 318 (353)
Q Consensus 292 P~~~~~~~l~~~g~~t~~e~~~~~~e~ 318 (353)
+...+..+|.++|++|+++.+.|+++-
T Consensus 22 ~~~~v~~~L~~~gIlT~~~~e~I~a~~ 48 (94)
T cd08327 22 VDGLVIQYLYQEGILTESHVEEIESQT 48 (94)
T ss_pred chHHHHHHHHhCCCCCHHHHHHHHccC
Confidence 445578889999999999999998754
No 108
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=20.29 E-value=55 Score=28.60 Aligned_cols=32 Identities=25% Similarity=0.601 Sum_probs=23.9
Q ss_pred cccccchhhhhhhhcceeeecCCcEEEEEeecchhh
Q psy16520 142 SPLATQLPQAVGSAYAYKLKKNEKVVIVYFGEGAAI 177 (353)
Q Consensus 142 s~vg~q~~~a~G~A~g~~~~~g~~v~~v~~Gdg~~~ 177 (353)
+..|-.+|.+.|++++. .+..++++.|||+..
T Consensus 48 g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~ 79 (177)
T cd02010 48 ATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFM 79 (177)
T ss_pred hhhhhHHHHHHHHHHhC----CCCcEEEEEcchHHH
Confidence 45566667777777763 356888999999986
Done!